Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id
SCNN1D	6339	broad.mit.edu	37	1	1225343	1225343	+	Intron	SNP	G	A	A			2011-2255:2012-373-T	g.chr1:1225343G>A	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
NBPF1	55672	broad.mit.edu	37	1	16918543	16918543	+	5'UTR	SNP	A	G	G			2011-2255:2012-373-T	g.chr1:16918543A>G	uc009vos.1	-	7					NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
HIVEP3	59269	broad.mit.edu	37	1	42010522	42010522	+	Intron	SNP	A	T	T			2011-2255:2012-373-T	g.chr1:42010522A>T	uc001cgz.3	-						HIVEP3_uc001cha.3_Intron|HIVEP3_uc001cgy.2_Intron	NM_024503	NP_078779
HIVEP3	59269	broad.mit.edu	37	1	42010524	42010524	+	Intron	SNP	C	T	T			2011-2255:2012-373-T	g.chr1:42010524C>T	uc001cgz.3	-						HIVEP3_uc001cha.3_Intron|HIVEP3_uc001cgy.2_Intron	NM_024503	NP_078779
SMYD3	64754	broad.mit.edu	37	1	246140283	246140283	+	Intron	SNP	C	T	T			2011-2255:2012-373-T	g.chr1:246140283C>T	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
CCDC6	8030	broad.mit.edu	37	10	61642188	61642188	+	Intron	SNP	G	C	C			2011-2255:2012-373-T	g.chr10:61642188G>C	uc001jks.3	-							NM_005436	NP_005427
MTA2	9219	broad.mit.edu	37	11	62365665	62365665	+	Intron	SNP	G	A	A	rs2849031	by1000genomes	2011-2255:2012-373-T	g.chr11:62365665G>A	uc001ntq.1	-						MTA2_uc010rlx.1_Intron	NM_004739	NP_004730
B4GALNT3	283358	broad.mit.edu	37	12	621317	621317	+	Intron	SNP	G	A	A	rs148130103	by1000genomes	2011-2255:2012-373-T	g.chr12:621317G>A	uc001qii.1	+							NM_173593	NP_775864
SLC7A1	6541	broad.mit.edu	37	13	30133456	30133456	+	Intron	SNP	A	T	T			2011-2255:2012-373-T	g.chr13:30133456A>T	uc001uso.2	-							NM_003045	NP_003036
COL4A2	1284	broad.mit.edu	37	13	111038374	111038374	+	Intron	SNP	T	C	C	rs80281875	by1000genomes	2011-2255:2012-373-T	g.chr13:111038374T>C	uc001vqx.2	+							NM_001846	NP_001837
F7	2155	broad.mit.edu	37	13	113762033	113762033	+	Intron	SNP	G	A	A			2011-2255:2012-373-T	g.chr13:113762033G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113762077	113762077	+	Intron	SNP	C	G	G			2011-2255:2012-373-T	g.chr13:113762077C>G	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
SERPINA12	145264	broad.mit.edu	37	14	94986049	94986049	+	5'Flank	SNP	A	G	G			2011-2255:2012-373-T	g.chr14:94986049A>G	uc001ydj.2	-							NM_173850	NP_776249
LMF1	64788	broad.mit.edu	37	16	998761	998761	+	Intron	SNP	C	T	T			2011-2255:2012-373-T	g.chr16:998761C>T	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
RPH3AL	9501	broad.mit.edu	37	17	164491	164491	+	Intron	SNP	G	T	T			2011-2255:2012-373-T	g.chr17:164491G>T	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
P2RX5	5026	broad.mit.edu	37	17	3583693	3583693	+	Intron	SNP	A	G	G	rs145451602	by1000genomes	2011-2255:2012-373-T	g.chr17:3583693A>G	uc002fwi.2	-						P2RX5_uc002fwd.2_Intron|P2RX5_uc002fwh.1_Intron|P2RX5_uc010vrx.1_Intron|P2RX5_uc002fwj.2_Intron|P2RX5_uc002fwk.2_Intron|P2RX5_uc002fwl.2_Intron	NM_002561	NP_002552
GAS7	8522	broad.mit.edu	37	17	9940524	9940524	+	Intron	SNP	G	A	A			2011-2255:2012-373-T	g.chr17:9940524G>A	uc002gmg.1	-						GAS7_uc002gmj.1_5'Flank|GAS7_uc010coh.1_Intron	NM_201433	NP_958839
TBC1D3	729873	broad.mit.edu	37	17	36349314	36349314	+	Intron	SNP	G	A	A	rs62072924		2011-2255:2012-373-T	g.chr17:36349314G>A	uc002hpr.2	-						TBC1D3_uc010wdl.1_5'Flank|TBC1D3_uc002hox.2_5'Flank|TBC1D3_uc010wdm.1_5'Flank|TBC1D3_uc002hpq.2_5'Flank|TBC1D3_uc010cvj.1_5'Flank|TBC1D3_uc010cvk.2_Intron|TBC1D3_uc002hpp.2_5'Flank|TBC1D3_uc010wdn.1_Intron	NM_001123391	NP_001116863
ERBB2	2064	broad.mit.edu	37	17	37844488	37844488	+	5'UTR	SNP	G	T	T			2011-2255:2012-373-T	g.chr17:37844488G>T	uc010cwa.2	+	1					ERBB2_uc002hsm.2_5'UTR|PGAP3_uc002hsj.2_5'Flank|PGAP3_uc010wej.1_5'Flank|PGAP3_uc002hsk.2_5'Flank|PGAP3_uc010cvz.2_5'Flank|ERBB2_uc002hsl.2_5'UTR	NM_001005862	NP_001005862
RMND5A	64795	broad.mit.edu	37	2	87641795	87641795	+	Intron	SNP	C	G	G			2011-2255:2012-373-T	g.chr2:87641795C>G	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179415741	179415741	+	Missense_Mutation	SNP	C	A	A			2011-2255:2012-373-T	g.chr2:179415741C>A	uc010zfg.1	-	285	84037	c.83813G>T	c.(83812-83814)AGC>ATC	p.S27938I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S21633I|TTN_uc010zfi.1_Missense_Mutation_p.S21566I|TTN_uc010zfj.1_Missense_Mutation_p.S21441I	NM_133378	NP_596869
TRPM2	7226	broad.mit.edu	37	21	45815817	45815817	+	Intron	SNP	A	G	G			2011-2255:2012-373-T	g.chr21:45815817A>G	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron	NM_003307	NP_003298
CHCHD6	84303	broad.mit.edu	37	3	126581313	126581313	+	Intron	SNP	C	T	T			2011-2255:2012-373-T	g.chr3:126581313C>T	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
GAK	2580	broad.mit.edu	37	4	907766	907766	+	Intron	SNP	A	C	C			2011-2255:2012-373-T	g.chr4:907766A>C	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_Intron|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246
RASGEF1C	255426	broad.mit.edu	37	5	179540685	179540685	+	Intron	SNP	T	C	C			2011-2255:2012-373-T	g.chr5:179540685T>C	uc003mlq.2	-						RASGEF1C_uc003mlr.2_Intron|RASGEF1C_uc003mlp.3_Intron	NM_175062	NP_778232
RASGEF1C	255426	broad.mit.edu	37	5	179540715	179540715	+	Intron	SNP	T	C	C			2011-2255:2012-373-T	g.chr5:179540715T>C	uc003mlq.2	-						RASGEF1C_uc003mlr.2_Intron|RASGEF1C_uc003mlp.3_Intron	NM_175062	NP_778232
VARS	7407	broad.mit.edu	37	6	31748777	31748777	+	Intron	SNP	G	A	A			2011-2255:2012-373-T	g.chr6:31748777G>A	uc003nxe.2	-						VARS_uc003nxf.1_5'Flank	NM_006295	NP_006286
MTHFD1L	25902	broad.mit.edu	37	6	151412082	151412082	+	Intron	SNP	T	C	C			2011-2255:2012-373-T	g.chr6:151412082T>C	uc003qob.2	+						MTHFD1L_uc011een.1_Intron|MTHFD1L_uc011eeo.1_Intron|MTHFD1L_uc003qoc.2_Intron	NM_015440	NP_056255
PARK2	5071	broad.mit.edu	37	6	162067396	162067396	+	Intron	SNP	G	A	A			2011-2255:2012-373-T	g.chr6:162067396G>A	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron|PARK2_uc011egf.1_Intron	NM_004562	NP_004553
PARK2	5071	broad.mit.edu	37	6	162622248	162622248	+	Missense_Mutation	SNP	C	A	A			2011-2255:2012-373-T	g.chr6:162622248C>A	uc003qtx.3	-	4	583	c.449G>T	c.(448-450)TGC>TTC	p.C150F	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_5'UTR|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Missense_Mutation_p.C150F|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Missense_Mutation_p.C150F	NM_004562	NP_004553
PKD1L1	168507	broad.mit.edu	37	7	47906091	47906091	+	Missense_Mutation	SNP	C	A	A			2011-2255:2012-373-T	g.chr7:47906091C>A	uc003tny.1	-	25	4018	c.4018G>T	c.(4018-4020)GCC>TCC	p.A1340S		NM_138295	NP_612152
PTPRN2	5799	broad.mit.edu	37	7	157941064	157941064	+	Intron	SNP	C	T	T	rs113304374		2011-2255:2012-373-T	g.chr7:157941064C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1781549	1781549	+	Intron	SNP	T	G	G			2011-2255:2012-373-T	g.chr8:1781549T>G	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
ZFHX4	79776	broad.mit.edu	37	8	77763761	77763761	+	Missense_Mutation	SNP	T	A	A			2011-2255:2012-373-T	g.chr8:77763761T>A	uc003yav.2	+	10	4856	c.4469T>A	c.(4468-4470)CTT>CAT	p.L1490H	ZFHX4_uc003yau.1_Missense_Mutation_p.L1535H|ZFHX4_uc003yaw.1_Missense_Mutation_p.L1490H	NM_024721	NP_078997
HEATR7A	727957	broad.mit.edu	37	8	145288338	145288338	+	Intron	SNP	T	C	C	rs11784356		2011-2255:2012-373-T	g.chr8:145288338T>C	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
NOTCH1	4851	broad.mit.edu	37	9	139396851	139396851	+	Missense_Mutation	SNP	C	T	T			2011-2255:2012-373-T	g.chr9:139396851C>T	uc004chz.2	-	28	5257	c.5257G>A	c.(5257-5259)GGG>AGG	p.G1753R		NM_017617	NP_060087
KIF1B	23095	broad.mit.edu	37	1	10386241	10386241	+	Silent	SNP	C	T	T			2011-2257:2012-329-T	g.chr1:10386241C>T	uc001aqx.3	+	27	2950	c.2748C>T	c.(2746-2748)GCC>GCT	p.A916A	KIF1B_uc001aqw.3_Silent_p.A870A|KIF1B_uc001aqy.2_Silent_p.A890A|KIF1B_uc001aqz.2_Silent_p.A916A|KIF1B_uc001ara.2_Silent_p.A876A|KIF1B_uc001arb.2_Silent_p.A902A	NM_015074	NP_055889
MDM4	4194	broad.mit.edu	37	1	204515863	204515863	+	Intron	SNP	C	T	T	rs2290855	by1000genomes	2011-2257:2012-329-T	g.chr1:204515863C>T	uc001hba.2	+						MDM4_uc001hbd.1_Intron|MDM4_uc010pqw.1_Intron|MDM4_uc010pqx.1_Intron|MDM4_uc001hay.1_Intron|MDM4_uc001hbb.2_Intron|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_Intron|MDM4_uc009xbe.1_Intron	NM_002393	NP_002384
USH2A	7399	broad.mit.edu	37	1	215990414	215990414	+	Missense_Mutation	SNP	A	C	C	rs41305094	byFrequency	2011-2257:2012-329-T	g.chr1:215990414A>C	uc001hku.1	-	48	9882	c.9495T>G	c.(9493-9495)GAT>GAG	p.D3165E		NM_206933	NP_996816
RB1	5925	broad.mit.edu	37	13	48936983	48936983	+	Nonsense_Mutation	SNP	C	T	T			2011-2257:2012-329-T	g.chr13:48936983C>T	uc001vcb.2	+	8	917	c.751C>T	c.(751-753)CGA>TGA	p.R251*	RB1_uc010acs.1_RNA|RB1_uc010act.1_Intron	NM_000321	NP_000312
LMF1	64788	broad.mit.edu	37	16	907692	907692	+	Intron	SNP	T	A	A			2011-2257:2012-329-T	g.chr16:907692T>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
DSEL	92126	broad.mit.edu	37	18	65181965	65181965	+	Translation_Start_Site	SNP	G	C	C			2011-2257:2012-329-T	g.chr18:65181965G>C	uc002lke.1	-	2	1135	c.-89C>G	c.(-91--87)ATCAG>ATGAG			NM_032160	NP_115536
RMND5A	64795	broad.mit.edu	37	2	87625846	87625846	+	Intron	SNP	T	C	C	rs142224802	by1000genomes	2011-2257:2012-329-T	g.chr2:87625846T>C	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87634098	87634098	+	Intron	SNP	G	A	A	rs141310637		2011-2257:2012-329-T	g.chr2:87634098G>A	uc002srs.3	+								
HDAC4	9759	broad.mit.edu	37	2	240154344	240154344	+	Intron	SNP	T	C	C			2011-2257:2012-329-T	g.chr2:240154344T>C	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
COL18A1	80781	broad.mit.edu	37	21	46862828	46862828	+	Intron	SNP	G	C	C			2011-2257:2012-329-T	g.chr21:46862828G>C	uc002zhg.2	+							NM_130445	NP_569712
GRAMD4	23151	broad.mit.edu	37	22	47071101	47071101	+	Intron	SNP	C	G	G			2011-2257:2012-329-T	g.chr22:47071101C>G	uc003bhx.2	+						GRAMD4_uc010had.2_Intron|GRAMD4_uc003bhy.2_Intron	NM_015124	NP_055939
MUC4	4585	broad.mit.edu	37	3	195497918	195497918	+	Intron	SNP	G	C	C			2011-2257:2012-329-T	g.chr3:195497918G>C	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
CRIPAK	285464	broad.mit.edu	37	4	1388820	1388820	+	Missense_Mutation	SNP	G	A	A			2011-2257:2012-329-T	g.chr4:1388820G>A	uc003gdf.2	+	1	3481	c.521G>A	c.(520-522)TGT>TAT	p.C174Y		NM_175918	NP_787114
RUFY1	80230	broad.mit.edu	37	5	179016623	179016623	+	Missense_Mutation	SNP	G	A	A			2011-2257:2012-329-T	g.chr5:179016623G>A	uc003mka.1	+	9	1103	c.1103G>A	c.(1102-1104)CGA>CAA	p.R368Q	RUFY1_uc003mkb.1_Missense_Mutation_p.R260Q|RUFY1_uc003mkc.1_Missense_Mutation_p.R260Q|RUFY1_uc003mkd.1_5'Flank	NM_025158	NP_079434
PKHD1	5314	broad.mit.edu	37	6	51890550	51890550	+	Missense_Mutation	SNP	G	C	C			2011-2257:2012-329-T	g.chr6:51890550G>C	uc003pah.1	-	32	4334	c.4058C>G	c.(4057-4059)TCC>TGC	p.S1353C	PKHD1_uc003pai.2_Missense_Mutation_p.S1353C	NM_138694	NP_619639
RNGTT	8732	broad.mit.edu	37	6	89559588	89559588	+	Intron	SNP	C	A	A			2011-2257:2012-329-T	g.chr6:89559588C>A	uc003pmr.2	-						RNGTT_uc003pms.2_Intron|RNGTT_uc011dzu.1_Intron|RNGTT_uc003pmt.2_Intron	NM_003800	NP_003791
SCML4	256380	broad.mit.edu	37	6	108104926	108104926	+	Intron	SNP	C	T	T			2011-2257:2012-329-T	g.chr6:108104926C>T	uc010kdf.2	-						SCML4_uc003prz.3_Intron|SCML4_uc011eam.1_Intron	NM_198081	NP_932347
WBSCR17	64409	broad.mit.edu	37	7	70800776	70800776	+	Intron	SNP	C	T	T			2011-2257:2012-329-T	g.chr7:70800776C>T	uc003tvy.2	+						WBSCR17_uc003tvz.2_Intron	NM_022479	NP_071924
SLC26A3	1811	broad.mit.edu	37	7	107434897	107434897	+	Missense_Mutation	SNP	C	A	A			2011-2257:2012-329-T	g.chr7:107434897C>A	uc003ver.2	-	2	269	c.58G>T	c.(58-60)GCT>TCT	p.A20S	SLC26A3_uc003ves.2_Missense_Mutation_p.M1I	NM_000111	NP_000102
MLL3	58508	broad.mit.edu	37	7	151904483	151904483	+	Nonsense_Mutation	SNP	G	C	C			2011-2257:2012-329-T	g.chr7:151904483G>C	uc003wla.2	-	24	3962	c.3743C>G	c.(3742-3744)TCA>TGA	p.S1248*	MLL3_uc003wkz.2_Nonsense_Mutation_p.S309*	NM_170606	NP_733751
MLLT3	4300	broad.mit.edu	37	9	20414373	20414373	+	Silent	SNP	G	A	A			2011-2257:2012-329-T	g.chr9:20414373G>A	uc003zoe.2	-	5	730	c.471C>T	c.(469-471)AGC>AGT	p.S157S	MLLT3_uc011lne.1_Silent_p.S125S|MLLT3_uc011lnf.1_Silent_p.S154S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Intron	NM_004529	NP_004520
CLCN4	1183	broad.mit.edu	37	X	10162966	10162966	+	Missense_Mutation	SNP	T	G	G			2011-2257:2012-329-T	g.chrX:10162966T>G	uc004csy.3	+	5	690	c.260T>G	c.(259-261)GTC>GGC	p.V87G	CLCN4_uc011mid.1_5'UTR	NM_001830	NP_001821
TPM3	7170	broad.mit.edu	37	1	154165082	154165082	+	5'Flank	SNP	C	A	A			2011-2259:2012-1326-T	g.chr1:154165082C>A	uc001fec.1	-							NM_152263	NP_689476
ADARB2	105	broad.mit.edu	37	10	1502955	1502955	+	Intron	SNP	A	T	T	rs113092512		2011-2259:2012-1326-T	g.chr10:1502955A>T	uc009xhq.2	-							NM_018702	NP_061172
SYNE2	23224	broad.mit.edu	37	14	64674981	64674981	+	Intron	SNP	T	C	C	rs1152595	by1000genomes	2011-2259:2012-1326-T	g.chr14:64674981T>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_5'Flank	NM_015180	NP_055995
ACTN1	87	broad.mit.edu	37	14	69395845	69395845	+	Intron	SNP	G	A	A			2011-2259:2012-1326-T	g.chr14:69395845G>A	uc001xkl.2	-						ACTN1_uc010ttb.1_Intron|ACTN1_uc001xkm.2_Intron|ACTN1_uc001xkn.2_Intron|ACTN1_uc001xko.1_Intron|ACTN1_uc010ttd.1_Intron	NM_001102	NP_001093
DNAH3	55567	broad.mit.edu	37	16	21030982	21030982	+	Missense_Mutation	SNP	C	A	A			2011-2259:2012-1326-T	g.chr16:21030982C>A	uc010vbe.1	-	41	5986	c.5986G>T	c.(5986-5988)GTC>TTC	p.V1996F		NM_017539	NP_060009
DYSF	8291	broad.mit.edu	37	2	71845701	71845701	+	Intron	SNP	T	G	G			2011-2259:2012-1326-T	g.chr2:71845701T>G	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
TTN	7273	broad.mit.edu	37	2	179560896	179560896	+	Missense_Mutation	SNP	C	G	G			2011-2259:2012-1326-T	g.chr2:179560896C>G	uc010zfg.1	-	111	27395	c.27171G>C	c.(27169-27171)GAG>GAC	p.E9057D	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5718D|TTN_uc010fre.1_Missense_Mutation_p.E168D	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179642173	179642173	+	Nonsense_Mutation	SNP	G	C	C			2011-2259:2012-1326-T	g.chr2:179642173G>C	uc010zfg.1	-	26	4843	c.4619C>G	c.(4618-4620)TCA>TGA	p.S1540*	TTN_uc010zfh.1_Nonsense_Mutation_p.S1494*|TTN_uc010zfi.1_Nonsense_Mutation_p.S1494*|TTN_uc010zfj.1_Nonsense_Mutation_p.S1494*|TTN_uc002unb.2_Nonsense_Mutation_p.S1540*|uc002unc.1_RNA	NM_133378	NP_596869
PPP2R2C	5522	broad.mit.edu	37	4	6513591	6513591	+	Intron	SNP	A	G	G			2011-2259:2012-1326-T	g.chr4:6513591A>G	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
HLA-B	3106	broad.mit.edu	37	6	31325056	31325056	+	5'Flank	SNP	C	T	T	rs140833037		2011-2259:2012-1326-T	g.chr6:31325056C>T	uc003nth.2	-						HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_5'Flank|HLA-B_uc003ntg.1_5'Flank|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_5'Flank|HLA-B_uc010jso.2_5'Flank	NM_005514	NP_005505
ROS1	6098	broad.mit.edu	37	6	117725644	117725644	+	Intron	SNP	G	C	C			2011-2259:2012-1326-T	g.chr6:117725644G>C	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
SYNE1	23345	broad.mit.edu	37	6	152772190	152772190	+	Missense_Mutation	SNP	C	G	G			2011-2259:2012-1326-T	g.chr6:152772190C>G	uc010kiw.2	-	26	3780	c.3178G>C	c.(3178-3180)GAG>CAG	p.E1060Q	SYNE1_uc003qot.3_Missense_Mutation_p.E1067Q|SYNE1_uc003qou.3_Missense_Mutation_p.E1060Q|SYNE1_uc010kjb.1_Missense_Mutation_p.E1043Q|SYNE1_uc003qow.2_Missense_Mutation_p.E355Q|SYNE1_uc003qox.1_Missense_Mutation_p.E576Q	NM_182961	NP_892006
C7orf50	84310	broad.mit.edu	37	7	1041160	1041160	+	Intron	SNP	A	G	G			2011-2259:2012-1326-T	g.chr7:1041160A>G	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
SBDS	51119	broad.mit.edu	37	7	66456156	66456156	+	Missense_Mutation	SNP	C	G	G			2011-2259:2012-1326-T	g.chr7:66456156C>G	uc003tvm.1	-	4	776	c.592G>C	c.(592-594)GAA>CAA	p.E198Q		NM_016038	NP_057122
BRAF	673	broad.mit.edu	37	7	140625054	140625054	+	5'Flank	SNP	G	C	C			2011-2259:2012-1326-T	g.chr7:140625054G>C	uc003vwc.3	-							NM_004333	NP_004324
NOTCH1	4851	broad.mit.edu	37	9	139396408	139396408	+	Intron	SNP	A	G	G	rs3124594	by1000genomes	2011-2259:2012-1326-T	g.chr9:139396408A>G	uc004chz.2	-							NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139397707	139397707	+	Silent	SNP	G	A	A	rs10521	by1000genomes	2011-2259:2012-1326-T	g.chr9:139397707G>A	uc004chz.2	-	27	5094	c.5094C>T	c.(5092-5094)GAC>GAT	p.D1698D	NOTCH1_uc004cia.1_Silent_p.D928D	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139400406	139400406	+	Intron	SNP	C	T	T	rs11145764	by1000genomes	2011-2259:2012-1326-T	g.chr9:139400406C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
USP26	83844	broad.mit.edu	37	X	132160107	132160107	+	Missense_Mutation	SNP	G	C	C			2011-2259:2012-1326-T	g.chrX:132160107G>C	uc010nrm.1	-	6	2612	c.2142C>G	c.(2140-2142)ATC>ATG	p.I714M	USP26_uc011mvf.1_Missense_Mutation_p.I714M	NM_031907	NP_114113
EPHA2	1969	broad.mit.edu	37	1	16475483	16475483	+	Silent	SNP	G	A	A			2011-2260:2012-1319-T	g.chr1:16475483G>A	uc001aya.1	-	3	350	c.213C>T	c.(211-213)AAC>AAT	p.N71N	EPHA2_uc010oca.1_Silent_p.N71N	NM_004431	NP_004422
PDE4DIP	9659	broad.mit.edu	37	1	144854454	144854454	+	Intron	SNP	A	C	C	rs2274129		2011-2260:2012-1319-T	g.chr1:144854454A>C	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001elv.3_Intron	NM_014644	NP_055459
SPTA1	6708	broad.mit.edu	37	1	158613035	158613035	+	Intron	SNP	C	T	T			2011-2260:2012-1319-T	g.chr1:158613035C>T	uc001fst.1	-							NM_003126	NP_003117
CDH23	64072	broad.mit.edu	37	10	73448898	73448898	+	Intron	SNP	G	C	C			2011-2260:2012-1319-T	g.chr10:73448898G>C	uc001jrx.3	+						CDH23_uc001jry.2_Intron|CDH23_uc001jrz.2_Intron	NM_022124	NP_071407
DOCK1	1793	broad.mit.edu	37	10	129226764	129226764	+	Intron	SNP	T	C	C	rs12355357		2011-2260:2012-1319-T	g.chr10:129226764T>C	uc001ljt.2	+						DOCK1_uc010qun.1_Intron|DOCK1_uc009yaq.2_Intron	NM_001380	NP_001371
DOCK1	1793	broad.mit.edu	37	10	129226766	129226766	+	Intron	SNP	G	A	A	rs12359258		2011-2260:2012-1319-T	g.chr10:129226766G>A	uc001ljt.2	+						DOCK1_uc010qun.1_Intron|DOCK1_uc009yaq.2_Intron	NM_001380	NP_001371
AHNAK	79026	broad.mit.edu	37	11	62286091	62286091	+	Missense_Mutation	SNP	C	G	G			2011-2260:2012-1319-T	g.chr11:62286091C>G	uc001ntl.2	-	5	16098	c.15798G>C	c.(15796-15798)TTG>TTC	p.L5266F	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
AHNAK	79026	broad.mit.edu	37	11	62289665	62289665	+	Missense_Mutation	SNP	C	G	G			2011-2260:2012-1319-T	g.chr11:62289665C>G	uc001ntl.2	-	5	12524	c.12224G>C	c.(12223-12225)GGA>GCA	p.G4075A	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
LRTOMT	220074	broad.mit.edu	37	11	71792071	71792071	+	Intron	SNP	A	G	G	rs3018301	by1000genomes	2011-2260:2012-1319-T	g.chr11:71792071A>G	uc001orr.2	+						NUMA1_uc001ork.1_5'Flank|NUMA1_uc001orl.1_5'Flank|NUMA1_uc001orm.1_5'Flank|NUMA1_uc001oro.1_5'Flank|NUMA1_uc001orq.2_5'Flank|LRTOMT_uc009ysz.2_Intron|LRTOMT_uc010rqt.1_Intron|LRTOMT_uc010rqu.1_Intron|LRTOMT_uc009yta.2_Intron|LRTOMT_uc010rqv.1_Intron|LRTOMT_uc010rqw.1_Intron|LRTOMT_uc001ors.3_Intron|LRTOMT_uc010rqs.1_Intron	NM_145309	NP_660352
RIMBP2	23504	broad.mit.edu	37	12	131130838	131130838	+	Intron	SNP	G	C	C	rs143780499	by1000genomes	2011-2260:2012-1319-T	g.chr12:131130838G>C	uc001uim.2	-								
FLT3	2322	broad.mit.edu	37	13	28597434	28597434	+	Intron	SNP	C	T	T			2011-2260:2012-1319-T	g.chr13:28597434C>T	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
RB1	5925	broad.mit.edu	37	13	48937055	48937055	+	Nonsense_Mutation	SNP	G	T	T			2011-2260:2012-1319-T	g.chr13:48937055G>T	uc001vcb.2	+	8	989	c.823G>T	c.(823-825)GAA>TAA	p.E275*	RB1_uc010acs.1_RNA|RB1_uc010act.1_Intron	NM_000321	NP_000312
RB1	5925	broad.mit.edu	37	13	48938971	48938971	+	Intron	SNP	C	G	G			2011-2260:2012-1319-T	g.chr13:48938971C>G	uc001vcb.2	+						RB1_uc010act.1_Intron	NM_000321	NP_000312
ERCC5	2073	broad.mit.edu	37	13	103506157	103506157	+	Silent	SNP	G	A	A			2011-2260:2012-1319-T	g.chr13:103506157G>A	uc001vpw.2	+	3	758	c.315G>A	c.(313-315)ACG>ACA	p.T105T	ERCC5_uc001vpu.1_Silent_p.T559T|ERCC5_uc010tjb.1_Silent_p.T105T|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Intron	NM_000123	NP_000114
AKT1	207	broad.mit.edu	37	14	105259734	105259734	+	5'UTR	SNP	C	A	A	rs1130214	byFrequency;by1000genomes	2011-2260:2012-1319-T	g.chr14:105259734C>A	uc001ypk.2	-	1					INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_5'UTR|AKT1_uc010axa.2_Intron|AKT1_uc001ypm.2_Intron|AKT1_uc001ypn.2_Intron	NM_005163	NP_005154
SOLH	6650	broad.mit.edu	37	16	601048	601048	+	Intron	SNP	G	A	A			2011-2260:2012-1319-T	g.chr16:601048G>A	uc002chi.2	+						SOLH_uc002chj.2_5'Flank	NM_005632	NP_005623
TBC1D24	57465	broad.mit.edu	37	16	2537762	2537762	+	Intron	SNP	C	A	A			2011-2260:2012-1319-T	g.chr16:2537762C>A	uc002cql.2	+						TBC1D24_uc002cqk.2_Intron	NM_020705	NP_065756
DNAH3	55567	broad.mit.edu	37	16	21086771	21086771	+	Silent	SNP	G	A	A			2011-2260:2012-1319-T	g.chr16:21086771G>A	uc010vbe.1	-	21	3081	c.3081C>T	c.(3079-3081)GAC>GAT	p.D1027D		NM_017539	NP_060009
KLHDC4	54758	broad.mit.edu	37	16	87772742	87772742	+	Intron	SNP	T	C	C	rs138774934		2011-2260:2012-1319-T	g.chr16:87772742T>C	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
KLHDC4	54758	broad.mit.edu	37	16	87772784	87772784	+	Intron	SNP	C	T	T			2011-2260:2012-1319-T	g.chr16:87772784C>T	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
ZFPM1	161882	broad.mit.edu	37	16	88559851	88559851	+	Intron	SNP	A	G	G	rs74035506	by1000genomes	2011-2260:2012-1319-T	g.chr16:88559851A>G	uc002fkv.2	+							NM_153813	NP_722520
RAP1GAP2	23108	broad.mit.edu	37	17	2741776	2741776	+	Intron	SNP	G	C	C	rs9915696	by1000genomes	2011-2260:2012-1319-T	g.chr17:2741776G>C	uc010ckd.2	+						RAP1GAP2_uc010cke.2_Intron	NM_015085	NP_055900
BRIP1	83990	broad.mit.edu	37	17	59871114	59871114	+	Intron	SNP	G	T	T			2011-2260:2012-1319-T	g.chr17:59871114G>T	uc002izk.1	-							NM_032043	NP_114432
ABCA6	23460	broad.mit.edu	37	17	67077172	67077172	+	Intron	SNP	C	T	T			2011-2260:2012-1319-T	g.chr17:67077172C>T	uc002jhw.1	-							NM_080284	NP_525023
C18orf1	753	broad.mit.edu	37	18	13262428	13262428	+	Intron	SNP	C	T	T	rs76963834		2011-2260:2012-1319-T	g.chr18:13262428C>T	uc002ksa.2	+						C18orf1_uc002ksb.2_Intron	NM_181481	NP_852146
C18orf1	753	broad.mit.edu	37	18	13262494	13262494	+	Intron	SNP	C	T	T			2011-2260:2012-1319-T	g.chr18:13262494C>T	uc002ksa.2	+						C18orf1_uc002ksb.2_Intron	NM_181481	NP_852146
CDH2	1000	broad.mit.edu	37	18	25736672	25736672	+	Intron	SNP	C	A	A	rs4991538		2011-2260:2012-1319-T	g.chr18:25736672C>A	uc002kwg.2	-							NM_001792	NP_001783
ZNF443	10224	broad.mit.edu	37	19	12541447	12541447	+	Silent	SNP	G	A	A			2011-2260:2012-1319-T	g.chr19:12541447G>A	uc002mtu.2	-	4	1737	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F		NM_005815	NP_005806
NOTCH3	4854	broad.mit.edu	37	19	15281386	15281386	+	Intron	SNP	C	A	A	rs2074620	by1000genomes	2011-2260:2012-1319-T	g.chr19:15281386C>A	uc002nan.2	-							NM_000435	NP_000426
NLRP4	147945	broad.mit.edu	37	19	56362638	56362638	+	Intron	SNP	A	T	T			2011-2260:2012-1319-T	g.chr19:56362638A>T	uc002qmd.3	+							NM_134444	NP_604393
TSSC1	7260	broad.mit.edu	37	2	3289637	3289637	+	Intron	SNP	C	T	T			2011-2260:2012-1319-T	g.chr2:3289637C>T	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
APOB	338	broad.mit.edu	37	2	21267210	21267210	+	5'Flank	SNP	A	G	G	rs1800481	byFrequency;by1000genomes	2011-2260:2012-1319-T	g.chr2:21267210A>G	uc002red.2	-							NM_000384	NP_000375
RMND5A	64795	broad.mit.edu	37	2	87656158	87656158	+	Intron	SNP	C	A	A			2011-2260:2012-1319-T	g.chr2:87656158C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87656193	87656193	+	Intron	SNP	C	A	A			2011-2260:2012-1319-T	g.chr2:87656193C>A	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179419351	179419351	+	Missense_Mutation	SNP	C	G	G			2011-2260:2012-1319-T	g.chr2:179419351C>G	uc010zfg.1	-	281	81243	c.81019G>C	c.(81019-81021)GAG>CAG	p.E27007Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E20702Q|TTN_uc010zfi.1_Missense_Mutation_p.E20635Q|TTN_uc010zfj.1_Missense_Mutation_p.E20510Q	NM_133378	NP_596869
ASXL1	171023	broad.mit.edu	37	20	30956834	30956834	+	Missense_Mutation	SNP	G	A	A			2011-2260:2012-1319-T	g.chr20:30956834G>A	uc002wxs.2	+	3	586	c.160G>A	c.(160-162)GCA>ACA	p.A54T	ASXL1_uc002wxr.1_RNA|ASXL1_uc002wxt.2_RNA|ASXL1_uc010geb.2_5'UTR	NM_015338	NP_056153
TPTE	7179	broad.mit.edu	37	21	10996134	10996134	+	RNA	SNP	C	A	A			2011-2260:2012-1319-T	g.chr21:10996134C>A	uc002yis.1	-	12		c.2052G>T					
EP300	2033	broad.mit.edu	37	22	41566491	41566491	+	Missense_Mutation	SNP	G	C	C			2011-2260:2012-1319-T	g.chr22:41566491G>C	uc003azl.3	+	27	4763	c.4368G>C	c.(4366-4368)AAG>AAC	p.K1456N		NM_001429	NP_001420
GMPS	8833	broad.mit.edu	37	3	155628896	155628896	+	Intron	SNP	C	A	A			2011-2260:2012-1319-T	g.chr3:155628896C>A	uc003faq.2	+						GMPS_uc011bom.1_Intron	NM_003875	NP_003866
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	C	C	rs104886003		2011-2260:2012-1319-T	g.chr3:178936091G>C	uc003fjk.2	+	10	1790	c.1633G>C	c.(1633-1635)GAG>CAG	p.E545Q		NM_006218	NP_006209
FGFR3	2261	broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	G	G	rs121913483		2011-2260:2012-1319-T	g.chr4:1803568C>G	uc003gdr.3	+	7	1002	c.746C>G	c.(745-747)TCC>TGC	p.S249C	FGFR3_uc003gdu.2_Missense_Mutation_p.S249C|FGFR3_uc003gds.3_Missense_Mutation_p.S249C|FGFR3_uc003gdq.3_Missense_Mutation_p.S249C|FGFR3_uc010icb.1_Missense_Mutation_p.S91C|FGFR3_uc003gdt.1_Missense_Mutation_p.S91C	NM_000142	NP_000133
FBXW7	55294	broad.mit.edu	37	4	153249384	153249384	+	Missense_Mutation	SNP	C	G	G			2011-2260:2012-1319-T	g.chr4:153249384C>G	uc003ims.2	-	9	1543	c.1394G>C	c.(1393-1395)CGT>CCT	p.R465P	FBXW7_uc011cii.1_Missense_Mutation_p.R465P|FBXW7_uc003imt.2_Missense_Mutation_p.R465P|FBXW7_uc011cih.1_Missense_Mutation_p.R289P|FBXW7_uc003imq.2_Missense_Mutation_p.R385P|FBXW7_uc003imr.2_Missense_Mutation_p.R347P	NM_033632	NP_361014
SLC6A3	6531	broad.mit.edu	37	5	1422679	1422679	+	Intron	SNP	A	G	G			2011-2260:2012-1319-T	g.chr5:1422679A>G	uc003jck.2	-							NM_001044	NP_001035
CTNND2	1501	broad.mit.edu	37	5	11346506	11346506	+	Missense_Mutation	SNP	C	T	T			2011-2260:2012-1319-T	g.chr5:11346506C>T	uc003jfa.1	-	9	1751	c.1606G>A	c.(1606-1608)GAT>AAT	p.D536N	CTNND2_uc010itt.2_Missense_Mutation_p.D445N|CTNND2_uc011cmy.1_Missense_Mutation_p.D199N|CTNND2_uc011cmz.1_Missense_Mutation_p.D103N|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.D103N	NM_001332	NP_001323
FAM134B	54463	broad.mit.edu	37	5	16535853	16535853	+	Intron	SNP	A	G	G	rs70938059		2011-2260:2012-1319-T	g.chr5:16535853A>G	uc003jfs.2	-							NM_001034850	NP_001030022
HLA-A	3105	broad.mit.edu	37	6	29912614	29912614	+	Intron	SNP	C	A	A	rs41545117		2011-2260:2012-1319-T	g.chr6:29912614C>A	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
HLA-A	3105	broad.mit.edu	37	6	29913386	29913386	+	3'UTR	SNP	C	G	G	rs116392944	by1000genomes	2011-2260:2012-1319-T	g.chr6:29913386C>G	uc003nol.2	+	8					HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003non.2_3'UTR|HLA-A_uc003noo.2_3'UTR|HLA-A_uc010jrr.2_3'UTR|HLA-A_uc003nom.2_3'UTR|HLA-A_uc011dmc.1_3'UTR|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
HLA-A	3105	broad.mit.edu	37	6	29913430	29913430	+	3'UTR	SNP	C	T	T	rs115913151	by1000genomes	2011-2260:2012-1319-T	g.chr6:29913430C>T	uc003nol.2	+	8					HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003non.2_3'UTR|HLA-A_uc003noo.2_3'UTR|HLA-A_uc010jrr.2_3'UTR|HLA-A_uc003nom.2_3'UTR|HLA-A_uc011dmc.1_3'UTR|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
ME1	4199	broad.mit.edu	37	6	84141253	84141253	+	5'Flank	SNP	T	G	G	rs3812144	by1000genomes	2011-2260:2012-1319-T	g.chr6:84141253T>G	uc003pjy.2	-						ME1_uc011dzb.1_5'Flank|ME1_uc011dzc.1_5'Flank	NM_002395	NP_002386
ME1	4199	broad.mit.edu	37	6	84141282	84141282	+	5'Flank	SNP	G	C	C	rs3812143	by1000genomes	2011-2260:2012-1319-T	g.chr6:84141282G>C	uc003pjy.2	-						ME1_uc011dzb.1_5'Flank|ME1_uc011dzc.1_5'Flank	NM_002395	NP_002386
ME1	4199	broad.mit.edu	37	6	84141393	84141393	+	5'Flank	SNP	T	C	C	rs3812142	by1000genomes	2011-2260:2012-1319-T	g.chr6:84141393T>C	uc003pjy.2	-						ME1_uc011dzb.1_5'Flank|ME1_uc011dzc.1_5'Flank	NM_002395	NP_002386
SLC26A3	1811	broad.mit.edu	37	7	107431712	107431712	+	Intron	SNP	T	C	C	rs41280242	by1000genomes	2011-2260:2012-1319-T	g.chr7:107431712T>C	uc003ver.2	-						SLC26A3_uc003ves.2_Intron	NM_000111	NP_000102
MLL3	58508	broad.mit.edu	37	7	151859569	151859569	+	Missense_Mutation	SNP	G	A	A	rs138747124		2011-2260:2012-1319-T	g.chr7:151859569G>A	uc003wla.2	-	43	11312	c.11093C>T	c.(11092-11094)ACG>ATG	p.T3698M	MLL3_uc003wkz.2_Missense_Mutation_p.T2759M|MLL3_uc003wky.2_Missense_Mutation_p.T1207M	NM_170606	NP_733751
TOP1MT	116447	broad.mit.edu	37	8	144404100	144404100	+	Intron	SNP	C	T	T			2011-2260:2012-1319-T	g.chr8:144404100C>T	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144404214	144404214	+	Intron	SNP	T	A	A			2011-2260:2012-1319-T	g.chr8:144404214T>A	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
FANCC	2176	broad.mit.edu	37	9	97873995	97873995	+	Intron	SNP	G	A	A	rs45465991	by1000genomes	2011-2260:2012-1319-T	g.chr9:97873995G>A	uc004avh.2	-						FANCC_uc004avi.3_Intron	NM_000136	NP_000127
ERAS	3266	broad.mit.edu	37	X	48687687	48687687	+	Missense_Mutation	SNP	G	A	A			2011-2260:2012-1319-T	g.chrX:48687687G>A	uc004dky.1	+	1	405	c.154G>A	c.(154-156)GTG>ATG	p.V52M		NM_181532	NP_853510
HUWE1	10075	broad.mit.edu	37	X	53561096	53561096	+	Missense_Mutation	SNP	C	A	A			2011-2260:2012-1319-T	g.chrX:53561096C>A	uc004dsp.2	-	83	13296	c.12894G>T	c.(12892-12894)CAG>CAT	p.Q4298H	HUWE1_uc004dsn.2_Missense_Mutation_p.Q3106H	NM_031407	NP_113584
HUWE1	10075	broad.mit.edu	37	X	53630196	53630196	+	Intron	SNP	C	T	T			2011-2260:2012-1319-T	g.chrX:53630196C>T	uc004dsp.2	-							NM_031407	NP_113584
NONO	4841	broad.mit.edu	37	X	70517238	70517238	+	Missense_Mutation	SNP	C	T	T			2011-2260:2012-1319-T	g.chrX:70517238C>T	uc004dzo.2	+	9	1665	c.955C>T	c.(955-957)CGC>TGC	p.R319C	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.2_Missense_Mutation_p.R319C|NONO_uc004dzp.2_Missense_Mutation_p.R319C|NONO_uc011mpv.1_Missense_Mutation_p.R230C|NONO_uc004dzq.2_Missense_Mutation_p.R188C	NM_001145408	NP_001138880
MDM4	4194	broad.mit.edu	37	1	204516025	204516025	+	Intron	SNP	A	G	G	rs2290854	by1000genomes	2011-2262:2012-374-T	g.chr1:204516025A>G	uc001hba.2	+						MDM4_uc001hbd.1_Intron|MDM4_uc010pqw.1_Intron|MDM4_uc010pqx.1_Intron|MDM4_uc001hay.1_Intron|MDM4_uc001hbb.2_Intron|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_Intron|MDM4_uc009xbe.1_Intron	NM_002393	NP_002384
PDE3A	5139	broad.mit.edu	37	12	20783100	20783100	+	Intron	SNP	C	T	T	rs11045348	by1000genomes	2011-2262:2012-374-T	g.chr12:20783100C>T	uc001reh.1	+							NM_000921	NP_000912
F7	2155	broad.mit.edu	37	13	113762657	113762657	+	Intron	SNP	G	A	A			2011-2262:2012-374-T	g.chr13:113762657G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
TRAF3	7187	broad.mit.edu	37	14	103276855	103276855	+	Intron	SNP	A	G	G	rs8006649	by1000genomes	2011-2262:2012-374-T	g.chr14:103276855A>G	uc001ymc.1	+						TRAF3_uc001yme.1_Intron|TRAF3_uc001ymd.1_Intron|TRAF3_uc010txy.1_Intron	NM_145725	NP_663777
BAIAP3	8938	broad.mit.edu	37	16	1389827	1389827	+	Intron	SNP	C	T	T			2011-2262:2012-374-T	g.chr16:1389827C>T	uc002clk.1	+						BAIAP3_uc002clj.2_Intron|BAIAP3_uc010uuz.1_Intron|BAIAP3_uc010uva.1_Intron|BAIAP3_uc010uvb.1_Intron|BAIAP3_uc010uvc.1_Intron	NM_003933	NP_003924
MYH13	8735	broad.mit.edu	37	17	10248715	10248715	+	Intron	SNP	T	A	A			2011-2262:2012-374-T	g.chr17:10248715T>A	uc002gmk.1	-						MYH13_uc010vvf.1_Intron	NM_003802	NP_003793
CCDC57	284001	broad.mit.edu	37	17	80108804	80108804	+	Intron	SNP	C	T	T			2011-2262:2012-374-T	g.chr17:80108804C>T	uc002kdx.1	-						CCDC57_uc002kdy.2_Intron	NM_198082	NP_932348
LRP1B	53353	broad.mit.edu	37	2	140997197	140997197	+	Intron	SNP	T	G	G	rs3748864	byFrequency;by1000genomes	2011-2262:2012-374-T	g.chr2:140997197T>G	uc002tvj.1	-							NM_018557	NP_061027
MICAL3	57553	broad.mit.edu	37	22	18359590	18359590	+	Intron	SNP	G	A	A	rs143884492		2011-2262:2012-374-T	g.chr22:18359590G>A	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
CHCHD6	84303	broad.mit.edu	37	3	126581089	126581089	+	Intron	SNP	T	A	A			2011-2262:2012-374-T	g.chr3:126581089T>A	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
CLSTN2	64084	broad.mit.edu	37	3	140282021	140282021	+	Missense_Mutation	SNP	C	T	T	rs148840334		2011-2262:2012-374-T	g.chr3:140282021C>T	uc003etn.2	+	15	2648	c.2458C>T	c.(2458-2460)CGG>TGG	p.R820W		NM_022131	NP_071414
ETV5	2119	broad.mit.edu	37	3	185766711	185766711	+	Intron	SNP	G	A	A	rs79060173	by1000genomes	2011-2262:2012-374-T	g.chr3:185766711G>A	uc003fpz.2	-						ETV5_uc003fpy.2_Intron	NM_004454	NP_004445
FAM53A	152877	broad.mit.edu	37	4	1651569	1651569	+	Intron	SNP	T	C	C	rs62287689	by1000genomes	2011-2262:2012-374-T	g.chr4:1651569T>C	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
FAM53A	152877	broad.mit.edu	37	4	1651582	1651582	+	Intron	SNP	A	T	T	rs36205275		2011-2262:2012-374-T	g.chr4:1651582A>T	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
PPP2R2C	5522	broad.mit.edu	37	4	6513603	6513603	+	Intron	SNP	G	A	A			2011-2262:2012-374-T	g.chr4:6513603G>A	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
PPP2R2C	5522	broad.mit.edu	37	4	6514023	6514023	+	Intron	SNP	G	A	A			2011-2262:2012-374-T	g.chr4:6514023G>A	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
FAT4	79633	broad.mit.edu	37	4	126411034	126411034	+	Intron	SNP	T	A	A			2011-2262:2012-374-T	g.chr4:126411034T>A	uc003ifj.3	+						FAT4_uc011cgp.1_Intron|FAT4_uc003ifi.1_Intron	NM_024582	NP_078858
SORBS2	8470	broad.mit.edu	37	4	186717994	186717994	+	Intron	SNP	G	A	A			2011-2262:2012-374-T	g.chr4:186717994G>A	uc003iyl.2	-						SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Intron|SORBS2_uc011cky.1_Intron|SORBS2_uc003iyp.2_Intron	NM_021069	NP_066547
SYNE1	23345	broad.mit.edu	37	6	152782933	152782933	+	Intron	SNP	G	A	A	rs579464	by1000genomes	2011-2262:2012-374-T	g.chr6:152782933G>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152809773	152809773	+	Intron	SNP	T	C	C	rs9371254	by1000genomes	2011-2262:2012-374-T	g.chr6:152809773T>C	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron	NM_182961	NP_892006
UBXN2B	137886	broad.mit.edu	37	8	59339291	59339291	+	Intron	SNP	G	C	C			2011-2262:2012-374-T	g.chr8:59339291G>C	uc003xtl.2	+							NM_001077619	NP_001071087
MMP16	4325	broad.mit.edu	37	8	89179837	89179837	+	Intron	SNP	C	A	A			2011-2262:2012-374-T	g.chr8:89179837C>A	uc003yeb.3	-						MMP16_uc003yec.2_Intron	NM_005941	NP_005932
ZFP41	286128	broad.mit.edu	37	8	144342275	144342275	+	3'UTR	SNP	C	T	T			2011-2262:2012-374-T	g.chr8:144342275C>T	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
PARP10	84875	broad.mit.edu	37	8	145055603	145055603	+	Intron	SNP	A	G	G	rs13254242		2011-2262:2012-374-T	g.chr8:145055603A>G	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
FANCC	2176	broad.mit.edu	37	9	97873339	97873339	+	Intron	SNP	G	A	A	rs879492	by1000genomes	2011-2262:2012-374-T	g.chr9:97873339G>A	uc004avh.2	-						FANCC_uc004avi.3_3'UTR	NM_000136	NP_000127
EXD3	54932	broad.mit.edu	37	9	140223485	140223485	+	Intron	SNP	G	A	A			2011-2262:2012-374-T	g.chr9:140223485G>A	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
PLCXD1	55344	broad.mit.edu	37	X	197002	197002	+	5'Flank	SNP	G	A	A			2011-2262:2012-374-T	g.chrX:197002G>A	uc004cpc.2	+						PLCXD1_uc011mgx.1_Intron	NM_018390	NP_060860
C1orf159	54991	broad.mit.edu	37	1	1043836	1043836	+	Intron	SNP	T	C	C			2011-2263:2012-1327-T	g.chr1:1043836T>C	uc001act.2	-						C1orf159_uc001acu.2_Intron|C1orf159_uc001acr.2_Intron|C1orf159_uc001acs.2_Intron|C1orf159_uc001acp.2_5'Flank	NM_017891	NP_060361
C1orf159	54991	broad.mit.edu	37	1	1043984	1043984	+	Intron	SNP	C	T	T	rs138360598	by1000genomes	2011-2263:2012-1327-T	g.chr1:1043984C>T	uc001act.2	-						C1orf159_uc001acu.2_Intron|C1orf159_uc001acr.2_Intron|C1orf159_uc001acs.2_Intron|C1orf159_uc001acp.2_5'Flank	NM_017891	NP_060361
PTCHD2	57540	broad.mit.edu	37	1	11582916	11582916	+	Intron	SNP	G	A	A			2011-2263:2012-1327-T	g.chr1:11582916G>A	uc001ash.3	+						PTCHD2_uc001asi.1_Intron	NM_020780	NP_065831
PDPN	10630	broad.mit.edu	37	1	13928522	13928522	+	Intron	SNP	T	G	G			2011-2263:2012-1327-T	g.chr1:13928522T>G	uc001avd.2	+						PDPN_uc001avc.2_Intron|PDPN_uc009vob.2_Intron|PDPN_uc009voc.2_Intron|PDPN_uc001ave.2_Intron|PDPN_uc001avf.2_Intron	NM_006474	NP_006465
NBPF1	55672	broad.mit.edu	37	1	16893619	16893619	+	Intron	SNP	G	C	C	rs142300312	by1000genomes	2011-2263:2012-1327-T	g.chr1:16893619G>C	uc009vos.1	-						NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron	NM_017940	NP_060410
NBPF1	55672	broad.mit.edu	37	1	16903026	16903026	+	Intron	SNP	C	A	A	rs3897291		2011-2263:2012-1327-T	g.chr1:16903026C>A	uc009vos.1	-						NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
SERINC2	347735	broad.mit.edu	37	1	31904885	31904885	+	Intron	SNP	A	T	T			2011-2263:2012-1327-T	g.chr1:31904885A>T	uc010ogh.1	+						SERINC2_uc010ogg.1_Intron|SERINC2_uc001bst.2_Intron|SERINC2_uc001bsu.2_Intron|SERINC2_uc001bsv.2_Intron	NM_178865	NP_849196
RBM15	64783	broad.mit.edu	37	1	110883681	110883681	+	Missense_Mutation	SNP	G	A	A			2011-2263:2012-1327-T	g.chr1:110883681G>A	uc001dzl.1	+	1	1737	c.1654G>A	c.(1654-1656)GCT>ACT	p.A552T	RBM15_uc001dzm.1_Missense_Mutation_p.A552T|uc001dzj.2_5'Flank	NM_022768	NP_073605
NOTCH2	4853	broad.mit.edu	37	1	120596817	120596817	+	Intron	SNP	T	C	C	rs3911326	by1000genomes	2011-2263:2012-1327-T	g.chr1:120596817T>C	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
SPTA1	6708	broad.mit.edu	37	1	158590210	158590210	+	Missense_Mutation	SNP	T	C	C			2011-2263:2012-1327-T	g.chr1:158590210T>C	uc001fst.1	-	44	6366	c.6167A>G	c.(6166-6168)AAC>AGC	p.N2056S		NM_003126	NP_003117
DDR2	4921	broad.mit.edu	37	1	162743367	162743367	+	Missense_Mutation	SNP	G	A	A			2011-2263:2012-1327-T	g.chr1:162743367G>A	uc001gcf.2	+	15	2302	c.1837G>A	c.(1837-1839)GAT>AAT	p.D613N	DDR2_uc001gcg.2_Missense_Mutation_p.D613N	NM_001014796	NP_001014796
USH2A	7399	broad.mit.edu	37	1	216465792	216465792	+	Intron	SNP	C	A	A			2011-2263:2012-1327-T	g.chr1:216465792C>A	uc001hku.1	-						USH2A_uc001hkv.2_Intron	NM_206933	NP_996816
NRAP	4892	broad.mit.edu	37	10	115423094	115423094	+	Intron	SNP	G	C	C	rs12770981	by1000genomes	2011-2263:2012-1327-T	g.chr10:115423094G>C	uc001laj.2	-						NRAP_uc001lak.2_Intron|NRAP_uc001lal.3_Intron	NM_198060	NP_932326
LRTOMT	220074	broad.mit.edu	37	11	71792011	71792011	+	Intron	SNP	C	A	A			2011-2263:2012-1327-T	g.chr11:71792011C>A	uc001orr.2	+						NUMA1_uc001ork.1_5'Flank|NUMA1_uc001orl.1_5'Flank|NUMA1_uc001orm.1_5'Flank|NUMA1_uc001oro.1_5'Flank|NUMA1_uc001orq.2_5'Flank|LRTOMT_uc009ysz.2_Intron|LRTOMT_uc010rqt.1_Intron|LRTOMT_uc010rqu.1_Intron|LRTOMT_uc009yta.2_Intron|LRTOMT_uc010rqv.1_Intron|LRTOMT_uc010rqw.1_Intron|LRTOMT_uc001ors.3_Intron|LRTOMT_uc010rqs.1_Intron	NM_145309	NP_660352
CBL	867	broad.mit.edu	37	11	119148988	119148988	+	Missense_Mutation	SNP	C	G	G			2011-2263:2012-1327-T	g.chr11:119148988C>G	uc001pwe.2	+	8	1346	c.1208C>G	c.(1207-1209)TCC>TGC	p.S403C		NM_005188	NP_005179
TSPAN9	10867	broad.mit.edu	37	12	3377607	3377607	+	Intron	SNP	C	T	T			2011-2263:2012-1327-T	g.chr12:3377607C>T	uc001qlp.2	+							NM_006675	NP_006666
PIK3C2G	5288	broad.mit.edu	37	12	18762450	18762450	+	Intron	SNP	A	C	C	rs2277328	by1000genomes	2011-2263:2012-1327-T	g.chr12:18762450A>C	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron|PIK3C2G_uc010sib.1_Intron|PIK3C2G_uc010sic.1_Intron	NM_004570	NP_004561
MLL2	8085	broad.mit.edu	37	12	49416368	49416368	+	Intron	SNP	C	T	T			2011-2263:2012-1327-T	g.chr12:49416368C>T	uc001rta.3	-							NM_003482	NP_003473
MLL2	8085	broad.mit.edu	37	12	49420277	49420277	+	Nonsense_Mutation	SNP	C	A	A			2011-2263:2012-1327-T	g.chr12:49420277C>A	uc001rta.3	-	48	15472	c.15472G>T	c.(15472-15474)GAG>TAG	p.E5158*		NM_003482	NP_003473
NAV3	89795	broad.mit.edu	37	12	78225110	78225110	+	5'UTR	SNP	T	C	C	rs12227066	by1000genomes	2011-2263:2012-1327-T	g.chr12:78225110T>C	uc001syp.2	+	1					NAV3_uc001syo.2_5'UTR	NM_014903	NP_055718
NAV3	89795	broad.mit.edu	37	12	78579430	78579430	+	Silent	SNP	C	A	A			2011-2263:2012-1327-T	g.chr12:78579430C>A	uc001syp.2	+	31	5915	c.5742C>A	c.(5740-5742)CGC>CGA	p.R1914R	NAV3_uc001syo.2_Silent_p.R1892R|NAV3_uc010sub.1_Silent_p.R1371R|NAV3_uc009zsf.2_Silent_p.R723R	NM_014903	NP_055718
RIMBP2	23504	broad.mit.edu	37	12	131002867	131002867	+	5'Flank	SNP	A	G	G	rs7134446	byFrequency;by1000genomes	2011-2263:2012-1327-T	g.chr12:131002867A>G	uc001uil.2	-						RIMBP2_uc001uim.2_Intron	NM_015347	NP_056162
RIMBP2	23504	broad.mit.edu	37	12	131002880	131002880	+	5'Flank	SNP	A	T	T	rs7134458	by1000genomes	2011-2263:2012-1327-T	g.chr12:131002880A>T	uc001uil.2	-						RIMBP2_uc001uim.2_Intron	NM_015347	NP_056162
RIMBP2	23504	broad.mit.edu	37	12	131130910	131130910	+	Intron	SNP	C	G	G			2011-2263:2012-1327-T	g.chr12:131130910C>G	uc001uim.2	-								
TDRD3	81550	broad.mit.edu	37	13	61068576	61068576	+	Missense_Mutation	SNP	C	A	A			2011-2263:2012-1327-T	g.chr13:61068576C>A	uc001via.2	+	8	1234	c.446C>A	c.(445-447)ACA>AAA	p.T149K	TDRD3_uc010aef.2_5'UTR|TDRD3_uc001vhz.3_Missense_Mutation_p.T149K|TDRD3_uc010aeg.2_Missense_Mutation_p.T242K|TDRD3_uc001vib.3_Missense_Mutation_p.T148K	NM_030794	NP_110421
GPC5	2262	broad.mit.edu	37	13	92408505	92408505	+	Intron	SNP	T	G	G	rs3783054	by1000genomes	2011-2263:2012-1327-T	g.chr13:92408505T>G	uc010tif.1	+							NM_004466	NP_004457
SYNE2	23224	broad.mit.edu	37	14	64457294	64457294	+	Intron	SNP	C	A	A			2011-2263:2012-1327-T	g.chr14:64457294C>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64574140	64574140	+	Intron	SNP	C	A	A	rs10135310	by1000genomes	2011-2263:2012-1327-T	g.chr14:64574140C>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
LMF1	64788	broad.mit.edu	37	16	908739	908739	+	Intron	SNP	T	A	A			2011-2263:2012-1327-T	g.chr16:908739T>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
KLHDC4	54758	broad.mit.edu	37	16	87772867	87772867	+	Intron	SNP	G	C	C			2011-2263:2012-1327-T	g.chr16:87772867G>C	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
TP53	7157	broad.mit.edu	37	17	7574035	7574035	+	Splice_Site	SNP	T	C	C			2011-2263:2012-1327-T	g.chr17:7574035T>C	uc002gim.2	-	10	1188	c.994_splice	c.e10-1	p.I332_splice	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_Splice_Site|TP53_uc010cng.1_Splice_Site|TP53_uc002gii.1_Splice_Site_p.I200_splice|TP53_uc010cnh.1_Splice_Site|TP53_uc010cni.1_Splice_Site|TP53_uc002gij.2_Splice_Site_p.I332_splice	NM_001126112	NP_001119584
RHBDL3	162494	broad.mit.edu	37	17	30603747	30603747	+	Intron	SNP	G	A	A	rs113197244		2011-2263:2012-1327-T	g.chr17:30603747G>A	uc002hhe.1	+						RHBDL3_uc010csw.1_Intron|RHBDL3_uc010csx.1_Intron|RHBDL3_uc010csy.1_Intron|RHBDL3_uc002hhf.1_Intron	NM_138328	NP_612201
PRKCA	5578	broad.mit.edu	37	17	64794765	64794765	+	Intron	SNP	G	A	A			2011-2263:2012-1327-T	g.chr17:64794765G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795452	64795452	+	Intron	SNP	A	G	G			2011-2263:2012-1327-T	g.chr17:64795452A>G	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795458	64795458	+	Intron	SNP	G	A	A			2011-2263:2012-1327-T	g.chr17:64795458G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795539	64795539	+	Intron	SNP	G	A	A			2011-2263:2012-1327-T	g.chr17:64795539G>A	uc002jfp.1	+							NM_002737	NP_002728
SEC14L1	6397	broad.mit.edu	37	17	75212270	75212270	+	3'UTR	SNP	A	C	C			2011-2263:2012-1327-T	g.chr17:75212270A>C	uc002jto.2	+	17					SEC14L1_uc010dhc.2_Intron|SEC14L1_uc010wth.1_3'UTR|SEC14L1_uc002jtm.2_3'UTR|SEC14L1_uc010wti.1_3'UTR	NM_003003	NP_002994
TBCD	6904	broad.mit.edu	37	17	80808088	80808088	+	Intron	SNP	G	C	C	rs150127399		2011-2263:2012-1327-T	g.chr17:80808088G>C	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TYMS	7298	broad.mit.edu	37	18	667173	667173	+	Intron	SNP	T	A	A			2011-2263:2012-1327-T	g.chr18:667173T>A	uc010dka.1	+						TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062
TYMS	7298	broad.mit.edu	37	18	667245	667245	+	Intron	SNP	T	A	A			2011-2263:2012-1327-T	g.chr18:667245T>A	uc010dka.1	+						TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062
TYMS	7298	broad.mit.edu	37	18	667583	667583	+	Intron	SNP	T	A	A			2011-2263:2012-1327-T	g.chr18:667583T>A	uc010dka.1	+						TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062
ZNF699	374879	broad.mit.edu	37	19	9407202	9407202	+	Missense_Mutation	SNP	G	A	A			2011-2263:2012-1327-T	g.chr19:9407202G>A	uc002mlc.1	-	5	878	c.878C>T	c.(877-879)TCG>TTG	p.S293L		NM_198535	NP_940937
TPRX1	284355	broad.mit.edu	37	19	48305974	48305974	+	Silent	SNP	C	T	T			2011-2263:2012-1327-T	g.chr19:48305974C>T	uc002php.1	-	2	365	c.294G>A	c.(292-294)CCG>CCA	p.P98P		NM_198479	NP_940881
PXDN	7837	broad.mit.edu	37	2	1714778	1714778	+	Intron	SNP	C	T	T			2011-2263:2012-1327-T	g.chr2:1714778C>T	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
LTBP1	4052	broad.mit.edu	37	2	33359565	33359565	+	Intron	SNP	G	A	A	rs116713089	by1000genomes	2011-2263:2012-1327-T	g.chr2:33359565G>A	uc002ros.2	+						LTBP1_uc002rot.2_5'Flank|LTBP1_uc002rou.2_5'Flank|LTBP1_uc002rov.2_5'Flank|LTBP1_uc010ymz.1_5'Flank|LTBP1_uc010yna.1_5'Flank	NM_206943	NP_996826
RMND5A	64795	broad.mit.edu	37	2	87623792	87623792	+	Intron	SNP	C	A	A			2011-2263:2012-1327-T	g.chr2:87623792C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87623804	87623804	+	Intron	SNP	A	G	G			2011-2263:2012-1327-T	g.chr2:87623804A>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641998	87641998	+	Intron	SNP	C	T	T			2011-2263:2012-1327-T	g.chr2:87641998C>T	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179399838	179399838	+	Missense_Mutation	SNP	C	T	T			2011-2263:2012-1327-T	g.chr2:179399838C>T	uc010zfg.1	-	307	94024	c.93800G>A	c.(93799-93801)CGT>CAT	p.R31267H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R24962H|TTN_uc010zfi.1_Missense_Mutation_p.R24895H|TTN_uc010zfj.1_Missense_Mutation_p.R24770H	NM_133378	NP_596869
ATIC	471	broad.mit.edu	37	2	216184482	216184482	+	Intron	SNP	A	G	G	rs16853782	by1000genomes	2011-2263:2012-1327-T	g.chr2:216184482A>G	uc002vex.3	+						ATIC_uc010zjo.1_Intron|ATIC_uc002vey.3_Intron	NM_004044	NP_004035
RUNX1	861	broad.mit.edu	37	21	36421908	36421908	+	Intron	SNP	G	T	T			2011-2263:2012-1327-T	g.chr21:36421908G>T	uc002yut.1	-						RUNX1_uc010gmu.2_5'Flank|RUNX1_uc010gmv.2_5'Flank|RUNX1_uc002yuj.3_5'Flank|RUNX1_uc002yuk.3_5'Flank|RUNX1_uc002yum.1_5'Flank|RUNX1_uc010gmw.1_5'Flank		
CIDEC	63924	broad.mit.edu	37	3	10035899	10035899	+	Intron	SNP	A	C	C	rs77213366	by1000genomes	2011-2263:2012-1327-T	g.chr3:10035899A>C	uc003bto.2	-						uc003bup.1_Intron|uc003buq.1_Intron		
PIK3CB	5291	broad.mit.edu	37	3	138474657	138474657	+	Silent	SNP	C	A	A			2011-2263:2012-1327-T	g.chr3:138474657C>A	uc011bmq.1	-	2	336	c.336G>T	c.(334-336)GTG>GTT	p.V112V		NM_006219	NP_006210
PIK3CA	5290	broad.mit.edu	37	3	178938871	178938871	+	Missense_Mutation	SNP	C	A	A			2011-2263:2012-1327-T	g.chr3:178938871C>A	uc003fjk.2	+	14	2270	c.2113C>A	c.(2113-2115)CAA>AAA	p.Q705K		NM_006218	NP_006209
PIK3CA	5290	broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G	rs121913279		2011-2263:2012-1327-T	g.chr3:178952085A>G	uc003fjk.2	+	21	3297	c.3140A>G	c.(3139-3141)CAT>CGT	p.H1047R		NM_006218	NP_006209
MUC4	4585	broad.mit.edu	37	3	195504440	195504440	+	Intron	SNP	C	G	G			2011-2263:2012-1327-T	g.chr3:195504440C>G	uc011bto.1	-						MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
SENP5	205564	broad.mit.edu	37	3	196625766	196625766	+	Intron	SNP	T	A	A			2011-2263:2012-1327-T	g.chr3:196625766T>A	uc003fwz.3	+						SENP5_uc011bty.1_Intron	NM_152699	NP_689912
SORCS2	57537	broad.mit.edu	37	4	7708052	7708052	+	Intron	SNP	T	C	C			2011-2263:2012-1327-T	g.chr4:7708052T>C	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
AFAP1	60312	broad.mit.edu	37	4	7865735	7865735	+	Intron	SNP	T	C	C			2011-2263:2012-1327-T	g.chr4:7865735T>C	uc003gkg.1	-						AFAP1_uc011bwk.1_Intron	NM_198595	NP_940997
AFAP1	60312	broad.mit.edu	37	4	7865856	7865856	+	Intron	SNP	T	G	G			2011-2263:2012-1327-T	g.chr4:7865856T>G	uc003gkg.1	-						AFAP1_uc011bwk.1_Intron	NM_198595	NP_940997
YTHDC1	91746	broad.mit.edu	37	4	69203620	69203620	+	Splice_Site	SNP	T	G	G			2011-2263:2012-1327-T	g.chr4:69203620T>G	uc003hdx.2	-	3	484	c.131_splice	c.e3-1	p.G44_splice	YTHDC1_uc003hdy.2_Splice_Site_p.G44_splice	NM_001031732	NP_001026902
CEP72	55722	broad.mit.edu	37	5	648681	648681	+	Intron	SNP	A	G	G			2011-2263:2012-1327-T	g.chr5:648681A>G	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	648695	648695	+	Intron	SNP	C	A	A			2011-2263:2012-1327-T	g.chr5:648695C>A	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649670	649670	+	Intron	SNP	T	G	G			2011-2263:2012-1327-T	g.chr5:649670T>G	uc003jbf.2	+							NM_018140	NP_060610
SLCO4C1	353189	broad.mit.edu	37	5	101627027	101627027	+	Intron	SNP	T	C	C	rs841929	by1000genomes	2011-2263:2012-1327-T	g.chr5:101627027T>C	uc003knm.2	-							NM_180991	NP_851322
PCDHA8	56140	broad.mit.edu	37	5	140221205	140221205	+	Missense_Mutation	SNP	C	T	T			2011-2263:2012-1327-T	g.chr5:140221205C>T	uc003lhs.2	+	1	299	c.299C>T	c.(298-300)GCG>GTG	p.A100V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.A100V	NM_018911	NP_061734
DST	667	broad.mit.edu	37	6	56505175	56505175	+	Silent	SNP	T	A	A	rs113432929	byFrequency;by1000genomes	2011-2263:2012-1327-T	g.chr6:56505175T>A	uc003pdf.2	-	17	2185	c.2157A>T	c.(2155-2157)TCA>TCT	p.S719S	DST_uc003pcz.3_Silent_p.S541S|DST_uc011dxj.1_Silent_p.S570S|DST_uc011dxk.1_Silent_p.S581S|DST_uc011dxl.1_Silent_p.S570S|DST_uc003pcy.3_Silent_p.S215S|DST_uc003pdb.2_Silent_p.S215S|DST_uc003pdc.3_Silent_p.S215S|DST_uc003pdd.3_Silent_p.S215S|DST_uc003pde.2_Silent_p.S657S	NM_001144769	NP_001138241
SCML4	256380	broad.mit.edu	37	6	108103869	108103869	+	Intron	SNP	C	G	G			2011-2263:2012-1327-T	g.chr6:108103869C>G	uc010kdf.2	-						SCML4_uc003prz.3_Intron|SCML4_uc011eam.1_Intron	NM_198081	NP_932347
SMOC2	64094	broad.mit.edu	37	6	169015237	169015237	+	Intron	SNP	C	T	T			2011-2263:2012-1327-T	g.chr6:169015237C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169015245	169015245	+	Intron	SNP	A	G	G			2011-2263:2012-1327-T	g.chr6:169015245A>G	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169015305	169015305	+	Intron	SNP	A	G	G			2011-2263:2012-1327-T	g.chr6:169015305A>G	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
PCLO	27445	broad.mit.edu	37	7	82538241	82538241	+	Silent	SNP	C	A	A			2011-2263:2012-1327-T	g.chr7:82538241C>A	uc003uhx.2	-	8	13678	c.13389G>T	c.(13387-13389)CTG>CTT	p.L4463L	PCLO_uc003uhv.2_Silent_p.L4463L	NM_033026	NP_149015
PCLO	27445	broad.mit.edu	37	7	82584781	82584781	+	Missense_Mutation	SNP	G	C	C			2011-2263:2012-1327-T	g.chr7:82584781G>C	uc003uhx.2	-	5	5777	c.5488C>G	c.(5488-5490)CTC>GTC	p.L1830V	PCLO_uc003uhv.2_Missense_Mutation_p.L1830V	NM_033026	NP_149015
PIK3CG	5294	broad.mit.edu	37	7	106508692	106508692	+	Missense_Mutation	SNP	C	A	A			2011-2263:2012-1327-T	g.chr7:106508692C>A	uc003vdv.3	+	2	771	c.686C>A	c.(685-687)ACC>AAC	p.T229N	PIK3CG_uc003vdu.2_Missense_Mutation_p.T229N|PIK3CG_uc003vdw.2_Missense_Mutation_p.T229N	NM_002649	NP_002640
SLC26A3	1811	broad.mit.edu	37	7	107434897	107434897	+	Missense_Mutation	SNP	C	A	A			2011-2263:2012-1327-T	g.chr7:107434897C>A	uc003ver.2	-	2	269	c.58G>T	c.(58-60)GCT>TCT	p.A20S	SLC26A3_uc003ves.2_Missense_Mutation_p.M1I	NM_000111	NP_000102
BRAF	673	broad.mit.edu	37	7	140449071	140449071	+	Intron	SNP	C	G	G	rs3789806	by1000genomes	2011-2263:2012-1327-T	g.chr7:140449071C>G	uc003vwc.3	-							NM_004333	NP_004324
PTPRN2	5799	broad.mit.edu	37	7	158144667	158144667	+	Intron	SNP	C	T	T			2011-2263:2012-1327-T	g.chr7:158144667C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158200046	158200046	+	Intron	SNP	G	T	T			2011-2263:2012-1327-T	g.chr7:158200046G>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158234463	158234463	+	Intron	SNP	C	T	T			2011-2263:2012-1327-T	g.chr7:158234463C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ZFHX4	79776	broad.mit.edu	37	8	77766208	77766208	+	Missense_Mutation	SNP	G	C	C			2011-2263:2012-1327-T	g.chr8:77766208G>C	uc003yav.2	+	10	7303	c.6916G>C	c.(6916-6918)GAC>CAC	p.D2306H	ZFHX4_uc003yau.1_Missense_Mutation_p.D2351H|ZFHX4_uc003yaw.1_Missense_Mutation_p.D2306H	NM_024721	NP_078997
UBR5	51366	broad.mit.edu	37	8	103289330	103289330	+	Missense_Mutation	SNP	C	A	A	rs141886654	byFrequency	2011-2263:2012-1327-T	g.chr8:103289330C>A	uc003ykr.1	-	45	6412	c.6379G>T	c.(6379-6381)GTG>TTG	p.V2127L	UBR5_uc003yks.1_Missense_Mutation_p.V2127L	NM_015902	NP_056986
ZNF16	7564	broad.mit.edu	37	8	146172189	146172189	+	Intron	SNP	C	T	T			2011-2263:2012-1327-T	g.chr8:146172189C>T	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
MELK	9833	broad.mit.edu	37	9	36643131	36643131	+	Intron	SNP	A	G	G	rs9298970	by1000genomes	2011-2263:2012-1327-T	g.chr9:36643131A>G	uc003zzn.2	+						MELK_uc011lpm.1_Intron|MELK_uc011lpn.1_Intron|MELK_uc011lpo.1_Intron|MELK_uc010mll.2_Intron|MELK_uc011lpp.1_Intron|MELK_uc010mlm.2_Intron|MELK_uc011lpq.1_Intron|MELK_uc011lpr.1_Intron|MELK_uc011lps.1_Intron	NM_014791	NP_055606
PBX3	5090	broad.mit.edu	37	9	128728459	128728459	+	3'UTR	SNP	A	G	G	rs11792585	by1000genomes	2011-2263:2012-1327-T	g.chr9:128728459A>G	uc004bqb.2	+	9					PBX3_uc004bqc.2_3'UTR|PBX3_uc004bqd.2_3'UTR|PBX3_uc011lzw.1_3'UTR|PBX3_uc011lzx.1_3'UTR|PBX3_uc004bqe.2_3'UTR	NM_006195	NP_006186
PRDM16	63976	broad.mit.edu	37	1	3082438	3082438	+	Intron	SNP	A	T	T	rs78749930	by1000genomes	2011-2264:2012-371-T	g.chr1:3082438A>T	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
KCNAB2	8514	broad.mit.edu	37	1	6081702	6081702	+	Intron	SNP	G	C	C			2011-2264:2012-371-T	g.chr1:6081702G>C	uc009vlv.1	+							NM_003636	NP_003627
AFAP1L2	84632	broad.mit.edu	37	10	116065402	116065402	+	Intron	SNP	A	G	G	rs116574255	by1000genomes	2011-2264:2012-371-T	g.chr10:116065402A>G	uc001lbn.2	-						AFAP1L2_uc001lbo.2_Intron|AFAP1L2_uc010qse.1_Intron|AFAP1L2_uc001lbp.2_Intron|AFAP1L2_uc001lbr.1_Intron|AFAP1L2_uc010qsd.1_5'Flank	NM_001001936	NP_001001936
JAKMIP3	282973	broad.mit.edu	37	10	133973896	133973896	+	Intron	SNP	T	C	C			2011-2264:2012-371-T	g.chr10:133973896T>C	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
JAKMIP3	282973	broad.mit.edu	37	10	133973899	133973899	+	Intron	SNP	A	G	G			2011-2264:2012-371-T	g.chr10:133973899A>G	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
CCND2	894	broad.mit.edu	37	12	4383118	4383118	+	5'UTR	SNP	G	C	C			2011-2264:2012-371-T	g.chr12:4383118G>C	uc001qmo.2	+	1						NM_001759	NP_001750
NRXN3	9369	broad.mit.edu	37	14	79175597	79175597	+	Missense_Mutation	SNP	C	G	G			2011-2264:2012-371-T	g.chr14:79175597C>G	uc001xun.2	+	4	631	c.140C>G	c.(139-141)TCT>TGT	p.S47C	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.S181C	NM_004796	NP_004787
BAIAP3	8938	broad.mit.edu	37	16	1389947	1389947	+	Intron	SNP	C	T	T			2011-2264:2012-371-T	g.chr16:1389947C>T	uc002clk.1	+						BAIAP3_uc002clj.2_Intron|BAIAP3_uc010uuz.1_Intron|BAIAP3_uc010uva.1_Intron|BAIAP3_uc010uvb.1_Intron|BAIAP3_uc010uvc.1_Intron	NM_003933	NP_003924
CORO7	79585	broad.mit.edu	37	16	4394330	4394330	+	Intron	SNP	C	T	T			2011-2264:2012-371-T	g.chr16:4394330C>T	uc002cwf.2	-						CORO7_uc002cwe.2_Intron|TIMM16_uc002cwd.2_Intron	NM_024535	NP_078811
ANKRD11	29123	broad.mit.edu	37	16	89366288	89366288	+	Intron	SNP	C	T	T			2011-2264:2012-371-T	g.chr16:89366288C>T	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_3'UTR|ANKRD11_uc002fnf.1_3'UTR	NM_013275	NP_037407
TCF25	22980	broad.mit.edu	37	16	89951520	89951520	+	Intron	SNP	C	G	G			2011-2264:2012-371-T	g.chr16:89951520C>G	uc002fpb.2	+						TCF25_uc002fpc.2_Intron	NM_014972	NP_055787
LRRC37B	114659	broad.mit.edu	37	17	30380292	30380292	+	Nonsense_Mutation	SNP	C	G	G			2011-2264:2012-371-T	g.chr17:30380292C>G	uc002hgu.2	+	12	2800	c.2789C>G	c.(2788-2790)TCA>TGA	p.S930*	LRRC37B_uc010wbx.1_Nonsense_Mutation_p.S848*|LRRC37B_uc010csu.2_Nonsense_Mutation_p.S879*	NM_052888	NP_443120
PRKCA	5578	broad.mit.edu	37	17	64794963	64794963	+	Intron	SNP	G	A	A			2011-2264:2012-371-T	g.chr17:64794963G>A	uc002jfp.1	+							NM_002737	NP_002728
RMND5A	64795	broad.mit.edu	37	2	87634306	87634306	+	Intron	SNP	G	A	A			2011-2264:2012-371-T	g.chr2:87634306G>A	uc002srs.3	+								
CASP8	841	broad.mit.edu	37	2	202126615	202126615	+	Intron	SNP	A	G	G	rs1861270	by1000genomes	2011-2264:2012-371-T	g.chr2:202126615A>G	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxs.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc010ftd.1_Intron|CASP8_uc002uxv.1_Intron|CASP8_uc002uxw.1_Intron	NM_033355	NP_203519
EPHA4	2043	broad.mit.edu	37	2	222347021	222347021	+	Intron	SNP	C	A	A			2011-2264:2012-371-T	g.chr2:222347021C>A	uc002vmq.2	-						EPHA4_uc002vmr.2_Intron|EPHA4_uc010zlm.1_Intron|EPHA4_uc010zln.1_Intron	NM_004438	NP_004429
GPR35	2859	broad.mit.edu	37	2	241562822	241562822	+	Intron	SNP	C	T	T	rs62187256		2011-2264:2012-371-T	g.chr2:241562822C>T	uc010fzh.1	+						GPR35_uc010fzi.1_Intron	NM_005301	NP_005292
BMP7	655	broad.mit.edu	37	20	55794003	55794003	+	Intron	SNP	A	C	C	rs36125547	by1000genomes	2011-2264:2012-371-T	g.chr20:55794003A>C	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
MYT1	4661	broad.mit.edu	37	20	62867432	62867432	+	Intron	SNP	G	C	C	rs35828584		2011-2264:2012-371-T	g.chr20:62867432G>C	uc002yii.2	+						MYT1_uc002yij.2_Intron	NM_004535	NP_004526
DSCAM	1826	broad.mit.edu	37	21	41447203	41447203	+	Intron	SNP	G	A	A			2011-2264:2012-371-T	g.chr21:41447203G>A	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
TRPM2	7226	broad.mit.edu	37	21	45815824	45815824	+	Intron	SNP	G	A	A	rs117963804	by1000genomes	2011-2264:2012-371-T	g.chr21:45815824G>A	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron	NM_003307	NP_003298
BBX	56987	broad.mit.edu	37	3	107491532	107491532	+	Missense_Mutation	SNP	G	C	C			2011-2264:2012-371-T	g.chr3:107491532G>C	uc010hpr.2	+	11	1291	c.964G>C	c.(964-966)GAA>CAA	p.E322Q	BBX_uc003dwk.3_Missense_Mutation_p.E322Q|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Missense_Mutation_p.E343Q|BBX_uc003dwm.3_Missense_Mutation_p.E322Q|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040
BBX	56987	broad.mit.edu	37	3	107492402	107492402	+	Missense_Mutation	SNP	G	A	A			2011-2264:2012-371-T	g.chr3:107492402G>A	uc010hpr.2	+	11	2161	c.1834G>A	c.(1834-1836)GAG>AAG	p.E612K	BBX_uc003dwk.3_Missense_Mutation_p.E612K|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Missense_Mutation_p.E633K|BBX_uc003dwm.3_Missense_Mutation_p.E612K|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040
CHCHD6	84303	broad.mit.edu	37	3	126581313	126581313	+	Intron	SNP	C	T	T			2011-2264:2012-371-T	g.chr3:126581313C>T	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
PPP2R2C	5522	broad.mit.edu	37	4	6513597	6513597	+	Intron	SNP	G	A	A			2011-2264:2012-371-T	g.chr4:6513597G>A	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
INPP4B	8821	broad.mit.edu	37	4	143395159	143395159	+	Intron	SNP	C	T	T			2011-2264:2012-371-T	g.chr4:143395159C>T	uc003iix.3	-						INPP4B_uc003iiw.3_Intron|INPP4B_uc011cho.1_Intron|INPP4B_uc003iiz.2_Intron	NM_003866	NP_003857
BPHL	670	broad.mit.edu	37	6	3146166	3146166	+	Intron	SNP	T	G	G			2011-2264:2012-371-T	g.chr6:3146166T>G	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
HLA-G	3135	broad.mit.edu	37	6	29795809	29795809	+	Intron	SNP	C	T	T	rs113309697		2011-2264:2012-371-T	g.chr6:29795809C>T	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-B	3106	broad.mit.edu	37	6	31322688	31322688	+	Intron	SNP	T	C	C	rs2596498	byFrequency;by1000genomes	2011-2264:2012-371-T	g.chr6:31322688T>C	uc003nth.2	-						HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Intron|HLA-B_uc003nti.1_Intron	NM_005514	NP_005505
COQ3	51805	broad.mit.edu	37	6	99842451	99842451	+	5'Flank	SNP	A	C	C	rs9389319	by1000genomes	2011-2264:2012-371-T	g.chr6:99842451A>C	uc003ppk.2	-							NM_017421	NP_059117
SYNE1	23345	broad.mit.edu	37	6	152546740	152546740	+	Intron	SNP	G	A	A	rs1998620	by1000genomes	2011-2264:2012-371-T	g.chr6:152546740G>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152782933	152782933	+	Intron	SNP	G	A	A	rs579464	by1000genomes	2011-2264:2012-371-T	g.chr6:152782933G>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
DLGAP2	9228	broad.mit.edu	37	8	1591683	1591683	+	Intron	SNP	C	G	G			2011-2264:2012-371-T	g.chr8:1591683C>G	uc003wpl.2	+						DLGAP2_uc003wpm.2_Intron	NM_004745	NP_004736
TEX15	56154	broad.mit.edu	37	8	30707054	30707054	+	5'Flank	SNP	T	C	C	rs74899836	by1000genomes	2011-2264:2012-371-T	g.chr8:30707054T>C	uc003xil.2	-						TEX15_uc011lbc.1_Intron	NM_031271	NP_112561
HOOK3	84376	broad.mit.edu	37	8	42805433	42805433	+	Intron	SNP	C	A	A			2011-2264:2012-371-T	g.chr8:42805433C>A	uc003xpr.2	+						HOOK3_uc010lxq.1_Intron	NM_032410	NP_115786
PARP10	84875	broad.mit.edu	37	8	145055720	145055720	+	Intron	SNP	A	G	G			2011-2264:2012-371-T	g.chr8:145055720A>G	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
HEATR7A	727957	broad.mit.edu	37	8	145288295	145288295	+	Intron	SNP	C	A	A	rs11779369		2011-2264:2012-371-T	g.chr8:145288295C>A	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
NOTCH2	4853	broad.mit.edu	37	1	120497487	120497487	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr1:120497487G>A	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
KIF21B	23046	broad.mit.edu	37	1	200976351	200976351	+	Intron	SNP	C	G	G			2011-2265:2012-367-T	g.chr1:200976351C>G	uc001gvs.1	-						KIF21B_uc001gvr.1_Intron|KIF21B_uc009wzl.1_Intron|KIF21B_uc010ppn.1_Intron|KIF21B_uc001gvt.1_5'Flank	NM_017596	NP_060066
PCDH15	65217	broad.mit.edu	37	10	56424053	56424053	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr10:56424053G>A	uc001jju.1	-						PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Intron|PCDH15_uc010qhw.1_Intron|PCDH15_uc010qhx.1_Intron|PCDH15_uc010qhy.1_Intron|PCDH15_uc010qhz.1_Intron|PCDH15_uc010qia.1_Intron|PCDH15_uc010qib.1_Intron|PCDH15_uc001jjw.2_Intron	NM_033056	NP_149045
FGFR2	2263	broad.mit.edu	37	10	123239254	123239254	+	3'UTR	SNP	A	C	C			2011-2265:2012-367-T	g.chr10:123239254A>C	uc010qtk.1	-	19					FGFR2_uc010qtg.1_3'UTR|FGFR2_uc010qth.1_3'UTR|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_3'UTR|FGFR2_uc010qtl.1_3'UTR|FGFR2_uc010qtm.1_3'UTR|FGFR2_uc001lfg.3_3'UTR	NM_000141	NP_000132
GPR123	84435	broad.mit.edu	37	10	134892467	134892467	+	Intron	SNP	C	T	T			2011-2265:2012-367-T	g.chr10:134892467C>T	uc001llw.2	+								
BRSK2	9024	broad.mit.edu	37	11	1415531	1415531	+	Intron	SNP	C	T	T			2011-2265:2012-367-T	g.chr11:1415531C>T	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
EPS8	2059	broad.mit.edu	37	12	15823836	15823836	+	Missense_Mutation	SNP	C	T	T			2011-2265:2012-367-T	g.chr12:15823836C>T	uc009zif.2	-	4	252	c.158G>A	c.(157-159)CGG>CAG	p.R53Q	EPS8_uc001rdb.2_Missense_Mutation_p.R53Q|EPS8_uc009zig.2_5'UTR	NM_004447	NP_004438
GLI1	2735	broad.mit.edu	37	12	57865613	57865613	+	Silent	SNP	A	G	G			2011-2265:2012-367-T	g.chr12:57865613A>G	uc001snx.2	+	12	3168	c.3090A>G	c.(3088-3090)GAA>GAG	p.E1030E	GLI1_uc009zpq.2_Silent_p.E902E	NM_005269	NP_005260
C12orf51	283450	broad.mit.edu	37	12	112734920	112734920	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr12:112734920G>A	uc009zwc.2	-							NM_001109662	NP_001103132
RIMBP2	23504	broad.mit.edu	37	12	131068906	131068906	+	Intron	SNP	T	C	C			2011-2265:2012-367-T	g.chr12:131068906T>C	uc001uim.2	-								
COL4A2	1284	broad.mit.edu	37	13	111134145	111134145	+	Intron	SNP	C	T	T	rs137896261		2011-2265:2012-367-T	g.chr13:111134145C>T	uc001vqx.2	+							NM_001846	NP_001837
COL4A2	1284	broad.mit.edu	37	13	111134149	111134149	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr13:111134149G>A	uc001vqx.2	+							NM_001846	NP_001837
COL4A2	1284	broad.mit.edu	37	13	111134167	111134167	+	Intron	SNP	C	T	T	rs112843286	by1000genomes	2011-2265:2012-367-T	g.chr13:111134167C>T	uc001vqx.2	+							NM_001846	NP_001837
F7	2155	broad.mit.edu	37	13	113763278	113763278	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr13:113763278G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
TFDP1	7027	broad.mit.edu	37	13	114280126	114280126	+	Intron	SNP	T	C	C			2011-2265:2012-367-T	g.chr13:114280126T>C	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
NIN	51199	broad.mit.edu	37	14	51192544	51192544	+	Intron	SNP	C	A	A			2011-2265:2012-367-T	g.chr14:51192544C>A	uc001wyi.2	-						NIN_uc001wyj.2_Intron	NM_020921	NP_065972
NIN	51199	broad.mit.edu	37	14	51223188	51223188	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr14:51223188G>A	uc001wym.2	-						NIN_uc001wyi.2_Intron|NIN_uc001wyj.2_Intron|NIN_uc001wyk.2_Intron|NIN_uc010tqp.1_Intron|NIN_uc001wyo.2_Intron	NM_182946	NP_891991
SYNE2	23224	broad.mit.edu	37	14	64580300	64580300	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr14:64580300G>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
PPP4R4	57718	broad.mit.edu	37	14	94700920	94700920	+	Silent	SNP	T	A	A			2011-2265:2012-367-T	g.chr14:94700920T>A	uc001ycs.1	+	7	799	c.645T>A	c.(643-645)CCT>CCA	p.P215P		NM_058237	NP_478144
HERC2	8924	broad.mit.edu	37	15	28362088	28362088	+	Intron	SNP	T	A	A			2011-2265:2012-367-T	g.chr15:28362088T>A	uc001zbj.2	-						HERC2_uc001zbi.2_Intron	NM_004667	NP_004658
BLM	641	broad.mit.edu	37	15	91304132	91304132	+	Missense_Mutation	SNP	G	A	A			2011-2265:2012-367-T	g.chr15:91304132G>A	uc002bpr.2	+	7	1626	c.1529G>A	c.(1528-1530)AGA>AAA	p.R510K	BLM_uc010uqh.1_Missense_Mutation_p.R510K|BLM_uc010uqi.1_Missense_Mutation_p.R135K|BLM_uc010bnx.2_Missense_Mutation_p.R510K|BLM_uc002bps.1_Missense_Mutation_p.R72K	NM_000057	NP_000048
DNAH3	55567	broad.mit.edu	37	16	21030982	21030982	+	Missense_Mutation	SNP	C	A	A			2011-2265:2012-367-T	g.chr16:21030982C>A	uc010vbe.1	-	41	5986	c.5986G>T	c.(5986-5988)GTC>TTC	p.V1996F		NM_017539	NP_060009
TP53	7157	broad.mit.edu	37	17	7577525	7577525	+	Silent	SNP	G	C	C			2011-2265:2012-367-T	g.chr17:7577525G>C	uc002gim.2	-	7	950	c.756C>G	c.(754-756)CTC>CTG	p.L252L	TP53_uc002gig.1_Silent_p.L252L|TP53_uc002gih.2_Silent_p.L252L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Silent_p.L120L|TP53_uc010cng.1_Silent_p.L120L|TP53_uc002gii.1_Silent_p.L120L|TP53_uc010cnh.1_Silent_p.L252L|TP53_uc010cni.1_Silent_p.L252L|TP53_uc002gij.2_Silent_p.L252L|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Silent_p.L159L|TP53_uc002gio.2_Silent_p.L120L	NM_001126112	NP_001119584
WRAP53	55135	broad.mit.edu	37	17	7590693	7590693	+	Intron	SNP	A	C	C			2011-2265:2012-367-T	g.chr17:7590693A>C	uc010vuh.1	+						WRAP53_uc010vui.1_5'Flank|WRAP53_uc002gip.2_5'Flank|WRAP53_uc002gir.2_5'Flank|WRAP53_uc002giq.2_5'Flank|WRAP53_uc010cnl.2_5'Flank|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gim.2_Intron|TP53_uc002gij.2_Intron|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Intron|TP53_uc010cnk.1_Intron	NM_001143990	NP_001137462
BRIP1	83990	broad.mit.edu	37	17	59761356	59761356	+	Silent	SNP	C	T	T			2011-2265:2012-367-T	g.chr17:59761356C>T	uc002izk.1	-	20	3192	c.3051G>A	c.(3049-3051)CCG>CCA	p.P1017P		NM_032043	NP_114432
PRKCA	5578	broad.mit.edu	37	17	64795350	64795350	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr17:64795350G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795473	64795473	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr17:64795473G>A	uc002jfp.1	+							NM_002737	NP_002728
PRCD	768206	broad.mit.edu	37	17	74522966	74522966	+	5'Flank	SNP	C	G	G			2011-2265:2012-367-T	g.chr17:74522966C>G	uc002jrw.1	+								
TBCD	6904	broad.mit.edu	37	17	80806808	80806808	+	Intron	SNP	C	T	T			2011-2265:2012-367-T	g.chr17:80806808C>T	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
SLC14A2	8170	broad.mit.edu	37	18	42897919	42897919	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr18:42897919G>A	uc010dnj.2	+						SLC14A2_uc002lbb.2_Intron	NM_007163	NP_009094
AP3D1	8943	broad.mit.edu	37	19	2104055	2104055	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr19:2104055G>A	uc002luz.2	-						AP3D1_uc010dsv.2_Intron|AP3D1_uc002luy.2_Intron|AP3D1_uc002lva.2_Intron	NM_003938	NP_003929
TPRX1	284355	broad.mit.edu	37	19	48305974	48305974	+	Silent	SNP	C	T	T			2011-2265:2012-367-T	g.chr19:48305974C>T	uc002php.1	-	2	365	c.294G>A	c.(292-294)CCG>CCA	p.P98P		NM_198479	NP_940881
BCL11A	53335	broad.mit.edu	37	2	60694306	60694306	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr2:60694306G>A	uc002sae.1	-						BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Intron|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044
BCL11A	53335	broad.mit.edu	37	2	60694317	60694317	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr2:60694317G>A	uc002sae.1	-						BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Intron|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044
BCL11A	53335	broad.mit.edu	37	2	60694324	60694324	+	Intron	SNP	A	G	G			2011-2265:2012-367-T	g.chr2:60694324A>G	uc002sae.1	-						BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Intron|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044
MICAL3	57553	broad.mit.edu	37	22	18359674	18359674	+	Intron	SNP	T	G	G	rs141877893		2011-2265:2012-367-T	g.chr22:18359674T>G	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
CHCHD6	84303	broad.mit.edu	37	3	126581313	126581313	+	Intron	SNP	C	T	T			2011-2265:2012-367-T	g.chr3:126581313C>T	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
MECOM	2122	broad.mit.edu	37	3	168865289	168865289	+	5'Flank	SNP	A	C	C			2011-2265:2012-367-T	g.chr3:168865289A>C	uc003ffi.3	-						MECOM_uc003ffj.3_5'Flank|MECOM_uc011bpi.1_5'Flank|MECOM_uc003ffn.3_5'Flank|MECOM_uc003ffk.2_Translation_Start_Site|MECOM_uc003ffl.2_Intron|MECOM_uc011bpj.1_Intron|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Intron|MECOM_uc003ffm.1_5'Flank|MECOM_uc003ffo.1_5'Flank	NM_005241	NP_005232
MUC4	4585	broad.mit.edu	37	3	195502339	195502339	+	Intron	SNP	A	G	G			2011-2265:2012-367-T	g.chr3:195502339A>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
SORCS2	57537	broad.mit.edu	37	4	7708025	7708025	+	Intron	SNP	T	C	C			2011-2265:2012-367-T	g.chr4:7708025T>C	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
KDR	3791	broad.mit.edu	37	4	55984793	55984793	+	Silent	SNP	C	T	T			2011-2265:2012-367-T	g.chr4:55984793C>T	uc003has.2	-	3	638	c.336G>A	c.(334-336)TCG>TCA	p.S112S	KDR_uc003hat.1_Silent_p.S112S|KDR_uc011bzx.1_Silent_p.S112S	NM_002253	NP_002244
INPP4B	8821	broad.mit.edu	37	4	143305119	143305119	+	Intron	SNP	G	A	A			2011-2265:2012-367-T	g.chr4:143305119G>A	uc003iix.3	-						INPP4B_uc003iiw.3_Intron|INPP4B_uc011chm.1_Intron|INPP4B_uc011cho.1_Intron	NM_003866	NP_003857
FBXW7	55294	broad.mit.edu	37	4	153251907	153251907	+	Nonsense_Mutation	SNP	G	A	A			2011-2265:2012-367-T	g.chr4:153251907G>A	uc003ims.2	-	7	1248	c.1099C>T	c.(1099-1101)CGA>TGA	p.R367*	FBXW7_uc011cii.1_Nonsense_Mutation_p.R367*|FBXW7_uc003imt.2_Nonsense_Mutation_p.R367*|FBXW7_uc011cih.1_Nonsense_Mutation_p.R191*|FBXW7_uc003imq.2_Nonsense_Mutation_p.R287*|FBXW7_uc003imr.2_Nonsense_Mutation_p.R249*	NM_033632	NP_361014
CDH12	1010	broad.mit.edu	37	5	21751890	21751890	+	Missense_Mutation	SNP	T	A	A			2011-2265:2012-367-T	g.chr5:21751890T>A	uc010iuc.2	-	12	2799	c.2341A>T	c.(2341-2343)ATG>TTG	p.M781L	CDH12_uc011cno.1_Missense_Mutation_p.M741L|CDH12_uc003jgk.2_Missense_Mutation_p.M781L|uc003jgj.2_Intron	NM_004061	NP_004052
SYNE1	23345	broad.mit.edu	37	6	152614802	152614802	+	Missense_Mutation	SNP	T	A	A			2011-2265:2012-367-T	g.chr6:152614802T>A	uc010kiw.2	-	95	18535	c.17933A>T	c.(17932-17934)AAG>ATG	p.K5978M	SYNE1_uc010kiv.2_Missense_Mutation_p.K502M|SYNE1_uc003qos.3_Missense_Mutation_p.K502M|SYNE1_uc003qot.3_Missense_Mutation_p.K5907M|SYNE1_uc003qou.3_Missense_Mutation_p.K5978M|SYNE1_uc010kiy.1_Missense_Mutation_p.K153M	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152748654	152748654	+	Intron	SNP	C	T	T			2011-2265:2012-367-T	g.chr6:152748654C>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152804488	152804488	+	Intron	SNP	G	T	T			2011-2265:2012-367-T	g.chr6:152804488G>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qox.1_5'Flank	NM_182961	NP_892006
CARD11	84433	broad.mit.edu	37	7	2985391	2985391	+	Intron	SNP	C	G	G			2011-2265:2012-367-T	g.chr7:2985391C>G	uc003smv.2	-							NM_032415	NP_115791
COL1A2	1278	broad.mit.edu	37	7	94023567	94023567	+	5'Flank	SNP	C	A	A			2011-2265:2012-367-T	g.chr7:94023567C>A	uc003ung.1	+						COL1A2_uc011kib.1_5'Flank	NM_000089	NP_000080
TRRAP	8295	broad.mit.edu	37	7	98479661	98479661	+	Intron	SNP	A	G	G			2011-2265:2012-367-T	g.chr7:98479661A>G	uc003upp.2	+						TRRAP_uc011kis.1_Intron	NM_003496	NP_003487
GRM8	2918	broad.mit.edu	37	7	126892334	126892334	+	5'UTR	SNP	C	T	T			2011-2265:2012-367-T	g.chr7:126892334C>T	uc003vlt.2	-	1					GRM8_uc010lkz.1_Intron	NM_001127323	NP_001120795
GRM8	2918	broad.mit.edu	37	7	126892799	126892799	+	Intron	SNP	C	T	T			2011-2265:2012-367-T	g.chr7:126892799C>T	uc010lkz.1	-						GRM8_uc003vlt.2_5'Flank	NM_001127323	
WDR86	349136	broad.mit.edu	37	7	151094746	151094746	+	Intron	SNP	C	T	T			2011-2265:2012-367-T	g.chr7:151094746C>T	uc003wkb.2	-						WDR86_uc003wka.2_Intron|WDR86_uc011kvk.1_Intron|WDR86_uc003wkc.2_Intron	NM_198285	NP_938026
MLL3	58508	broad.mit.edu	37	7	151874003	151874003	+	Missense_Mutation	SNP	A	T	T			2011-2265:2012-367-T	g.chr7:151874003A>T	uc003wla.2	-	38	8754	c.8535T>A	c.(8533-8535)AAT>AAA	p.N2845K	MLL3_uc003wkz.2_Missense_Mutation_p.N1906K|MLL3_uc003wky.2_Missense_Mutation_p.N354K	NM_170606	NP_733751
PKHD1L1	93035	broad.mit.edu	37	8	110491814	110491814	+	Nonsense_Mutation	SNP	C	T	T			2011-2265:2012-367-T	g.chr8:110491814C>T	uc003yne.2	+	54	9228	c.9124C>T	c.(9124-9126)CGA>TGA	p.R3042*		NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113326781	113326781	+	Missense_Mutation	SNP	C	G	G			2011-2265:2012-367-T	g.chr8:113326781C>G	uc003ynu.2	-	48	7585	c.7426G>C	c.(7426-7428)GAC>CAC	p.D2476H	CSMD3_uc003yns.2_Missense_Mutation_p.D1678H|CSMD3_uc003ynt.2_Missense_Mutation_p.D2436H|CSMD3_uc011lhx.1_Missense_Mutation_p.D2372H|CSMD3_uc003ynw.1_Missense_Mutation_p.D187H	NM_198123	NP_937756
PLEC	5339	broad.mit.edu	37	8	144995072	144995072	+	Missense_Mutation	SNP	A	T	T			2011-2265:2012-367-T	g.chr8:144995072A>T	uc003zaf.1	-	32	9498	c.9328T>A	c.(9328-9330)TGC>AGC	p.C3110S	PLEC_uc003zab.1_Missense_Mutation_p.C2973S|PLEC_uc003zac.1_Missense_Mutation_p.C2977S|PLEC_uc003zad.2_Missense_Mutation_p.C2973S|PLEC_uc003zae.1_Missense_Mutation_p.C2941S|PLEC_uc003zag.1_Missense_Mutation_p.C2951S|PLEC_uc003zah.2_Missense_Mutation_p.C2959S|PLEC_uc003zaj.2_Missense_Mutation_p.C3000S	NM_201380	NP_958782
ABL1	25	broad.mit.edu	37	9	133750375	133750375	+	Silent	SNP	C	A	A			2011-2265:2012-367-T	g.chr9:133750375C>A	uc004bzw.2	+	7	1209	c.1206C>A	c.(1204-1206)CCC>CCA	p.P402P	ABL1_uc004bzv.2_Silent_p.P421P	NM_005157	NP_005148
ODZ1	10178	broad.mit.edu	37	X	124030109	124030109	+	Intron	SNP	C	G	G			2011-2265:2012-367-T	g.chrX:124030109C>G	uc004euj.2	-						ODZ1_uc011muj.1_Intron|ODZ1_uc010nqy.2_Intron	NM_014253	NP_055068
TPM3	7170	broad.mit.edu	37	1	154165082	154165082	+	5'Flank	SNP	C	A	A			2011-2266:2012-3270-T	g.chr1:154165082C>A	uc001fec.1	-							NM_152263	NP_689476
ABL2	27	broad.mit.edu	37	1	179084072	179084072	+	Missense_Mutation	SNP	C	A	A			2011-2266:2012-3270-T	g.chr1:179084072C>A	uc001gmj.3	-	9	1789	c.1502G>T	c.(1501-1503)GGA>GTA	p.G501V	ABL2_uc010pnf.1_Missense_Mutation_p.G501V|ABL2_uc010png.1_Missense_Mutation_p.G480V|ABL2_uc010pnh.1_Missense_Mutation_p.G480V|ABL2_uc009wxe.2_Missense_Mutation_p.G480V|ABL2_uc001gmg.3_Missense_Mutation_p.G486V|ABL2_uc001gmi.3_Missense_Mutation_p.G486V|ABL2_uc001gmh.3_Missense_Mutation_p.G465V|ABL2_uc010pne.1_Missense_Mutation_p.G465V	NM_007314	NP_009298
SMYD3	64754	broad.mit.edu	37	1	246139539	246139539	+	Intron	SNP	C	T	T			2011-2266:2012-3270-T	g.chr1:246139539C>T	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
SMYD3	64754	broad.mit.edu	37	1	246139683	246139683	+	Intron	SNP	C	T	T			2011-2266:2012-3270-T	g.chr1:246139683C>T	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
C10orf11	83938	broad.mit.edu	37	10	77732782	77732782	+	Intron	SNP	G	A	A	rs71651051		2011-2266:2012-3270-T	g.chr10:77732782G>A	uc001jxi.2	+							NM_032024	NP_114413
OR5L2	26338	broad.mit.edu	37	11	55595015	55595015	+	Silent	SNP	T	C	C			2011-2266:2012-3270-T	g.chr11:55595015T>C	uc001nhy.1	+	1	321	c.321T>C	c.(319-321)TGT>TGC	p.C107C		NM_001004739	NP_001004739
LRTOMT	220074	broad.mit.edu	37	11	71792011	71792011	+	Intron	SNP	C	A	A			2011-2266:2012-3270-T	g.chr11:71792011C>A	uc001orr.2	+						NUMA1_uc001ork.1_5'Flank|NUMA1_uc001orl.1_5'Flank|NUMA1_uc001orm.1_5'Flank|NUMA1_uc001oro.1_5'Flank|NUMA1_uc001orq.2_5'Flank|LRTOMT_uc009ysz.2_Intron|LRTOMT_uc010rqt.1_Intron|LRTOMT_uc010rqu.1_Intron|LRTOMT_uc009yta.2_Intron|LRTOMT_uc010rqv.1_Intron|LRTOMT_uc010rqw.1_Intron|LRTOMT_uc001ors.3_Intron|LRTOMT_uc010rqs.1_Intron	NM_145309	NP_660352
GPR133	283383	broad.mit.edu	37	12	131530879	131530879	+	Intron	SNP	G	A	A	rs147962069	by1000genomes	2011-2266:2012-3270-T	g.chr12:131530879G>A	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
GPC5	2262	broad.mit.edu	37	13	93518480	93518480	+	Intron	SNP	C	T	T			2011-2266:2012-3270-T	g.chr13:93518480C>T	uc010tif.1	+							NM_004466	NP_004457
F7	2155	broad.mit.edu	37	13	113761605	113761605	+	Intron	SNP	A	G	G			2011-2266:2012-3270-T	g.chr13:113761605A>G	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113761639	113761639	+	Intron	SNP	A	G	G			2011-2266:2012-3270-T	g.chr13:113761639A>G	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
NTRK3	4916	broad.mit.edu	37	15	88472544	88472544	+	Missense_Mutation	SNP	C	T	T			2011-2266:2012-3270-T	g.chr15:88472544C>T	uc002bme.1	-	16	2173	c.2011G>A	c.(2011-2013)GCC>ACC	p.A671T	NTRK3_uc002bmh.2_Missense_Mutation_p.A663T|NTRK3_uc002bmf.1_Missense_Mutation_p.A671T|NTRK3_uc010upl.1_Missense_Mutation_p.A573T|NTRK3_uc010bnh.1_Missense_Mutation_p.A663T	NM_001012338	NP_001012338
TP53	7157	broad.mit.edu	37	17	7578351	7578351	+	Intron	SNP	C	G	G			2011-2266:2012-3270-T	g.chr17:7578351C>G	uc002gim.2	-						TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Intron|TP53_uc010cng.1_Intron|TP53_uc002gii.1_Intron|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gij.2_Intron|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Intron	NM_001126112	NP_001119584
CABLES1	91768	broad.mit.edu	37	18	20798312	20798312	+	Intron	SNP	C	G	G			2011-2266:2012-3270-T	g.chr18:20798312C>G	uc002kuc.2	+						C18orf45_uc010xaq.1_Intron|CABLES1_uc002kub.2_Intron|CABLES1_uc002kud.2_Intron	NM_001100619	NP_001094089
MED16	10025	broad.mit.edu	37	19	879647	879647	+	Intron	SNP	A	G	G			2011-2266:2012-3270-T	g.chr19:879647A>G	uc002lqd.1	-						MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Intron|MED16_uc002lqf.2_Intron|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Intron|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472
PXDN	7837	broad.mit.edu	37	2	1714938	1714938	+	Intron	SNP	C	T	T	rs113013882		2011-2266:2012-3270-T	g.chr2:1714938C>T	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87623376	87623376	+	Intron	SNP	G	A	A			2011-2266:2012-3270-T	g.chr2:87623376G>A	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141026694	141026694	+	Intron	SNP	G	T	T			2011-2266:2012-3270-T	g.chr2:141026694G>T	uc002tvj.1	-							NM_018557	NP_061027
FARP2	9855	broad.mit.edu	37	2	242407681	242407681	+	Missense_Mutation	SNP	C	G	G			2011-2266:2012-3270-T	g.chr2:242407681C>G	uc002wbi.1	+	18	2137	c.2020C>G	c.(2020-2022)CTC>GTC	p.L674V		NM_014808	NP_055623
SNPH	9751	broad.mit.edu	37	20	1258287	1258287	+	Intron	SNP	C	A	A			2011-2266:2012-3270-T	g.chr20:1258287C>A	uc002wes.2	+						SNPH_uc002wet.2_Intron	NM_014723	NP_055538
PTK6	5753	broad.mit.edu	37	20	62161536	62161536	+	Missense_Mutation	SNP	C	A	A			2011-2266:2012-3270-T	g.chr20:62161536C>A	uc002yfg.2	-	7	1103	c.1063G>T	c.(1063-1065)GCC>TCC	p.A355S	PTK6_uc011aay.1_Missense_Mutation_p.A254S|PTK6_uc011aaz.1_Missense_Mutation_p.A117S	NM_005975	NP_005966
TRPM2	7226	broad.mit.edu	37	21	45815798	45815798	+	Intron	SNP	G	A	A			2011-2266:2012-3270-T	g.chr21:45815798G>A	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron	NM_003307	NP_003298
MPPED1	758	broad.mit.edu	37	22	43891592	43891592	+	Intron	SNP	G	A	A			2011-2266:2012-3270-T	g.chr22:43891592G>A	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
MUC4	4585	broad.mit.edu	37	3	195502836	195502836	+	Intron	SNP	C	T	T			2011-2266:2012-3270-T	g.chr3:195502836C>T	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
PPP2R2C	5522	broad.mit.edu	37	4	6513573	6513573	+	Intron	SNP	G	A	A			2011-2266:2012-3270-T	g.chr4:6513573G>A	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
PCDHB11	56125	broad.mit.edu	37	5	140580483	140580483	+	Missense_Mutation	SNP	G	A	A			2011-2266:2012-3270-T	g.chr5:140580483G>A	uc003liy.2	+	1	1136	c.1136G>A	c.(1135-1137)GGA>GAA	p.G379E	PCDHB11_uc011daj.1_Missense_Mutation_p.G14E	NM_018931	NP_061754
SLIT3	6586	broad.mit.edu	37	5	168173708	168173708	+	Intron	SNP	T	C	C			2011-2266:2012-3270-T	g.chr5:168173708T>C	uc003mab.2	-						SLIT3_uc010jjg.2_Intron	NM_003062	NP_003053
HBS1L	10767	broad.mit.edu	37	6	135360746	135360746	+	Missense_Mutation	SNP	T	A	A			2011-2266:2012-3270-T	g.chr6:135360746T>A	uc003qez.2	-	4	602	c.395A>T	c.(394-396)AAT>ATT	p.N132I	HBS1L_uc011ecy.1_Intron|HBS1L_uc011ecz.1_Intron|HBS1L_uc011eda.1_Missense_Mutation_p.N90I|HBS1L_uc003qfa.2_Missense_Mutation_p.N132I	NM_006620	NP_006611
SYNE1	23345	broad.mit.edu	37	6	152605127	152605127	+	Missense_Mutation	SNP	G	A	A			2011-2266:2012-3270-T	g.chr6:152605127G>A	uc010kiw.2	-	96	18795	c.18193C>T	c.(18193-18195)CGG>TGG	p.R6065W	SYNE1_uc010kiv.2_Missense_Mutation_p.R589W|SYNE1_uc003qos.3_Missense_Mutation_p.R589W|SYNE1_uc003qot.3_Missense_Mutation_p.R5994W|SYNE1_uc003qou.3_Missense_Mutation_p.R6065W|SYNE1_uc010kiy.1_Missense_Mutation_p.R244W	NM_182961	NP_892006
MLL3	58508	broad.mit.edu	37	7	151945201	151945201	+	Missense_Mutation	SNP	G	A	A			2011-2266:2012-3270-T	g.chr7:151945201G>A	uc003wla.2	-	14	2537	c.2318C>T	c.(2317-2319)TCA>TTA	p.S773L		NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	158178969	158178969	+	Intron	SNP	C	T	T			2011-2266:2012-3270-T	g.chr7:158178969C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
RB1CC1	9821	broad.mit.edu	37	8	53596018	53596018	+	Intron	SNP	T	G	G			2011-2266:2012-3270-T	g.chr8:53596018T>G	uc003xre.3	-						RB1CC1_uc003xrf.3_Intron	NM_014781	NP_055596
NOTCH1	4851	broad.mit.edu	37	9	139400860	139400860	+	Intron	SNP	T	G	G			2011-2266:2012-3270-T	g.chr9:139400860T>G	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NKAP	79576	broad.mit.edu	37	X	119059334	119059334	+	Missense_Mutation	SNP	C	T	T			2011-2266:2012-3270-T	g.chrX:119059334C>T	uc004esh.2	-	9	1264	c.1097G>A	c.(1096-1098)CGA>CAA	p.R366Q	NKAP_uc004esg.2_Missense_Mutation_p.R253Q	NM_024528	NP_078804
PRDM16	63976	broad.mit.edu	37	1	3187037	3187037	+	Intron	SNP	A	T	T			2011-2267:2012-369-T	g.chr1:3187037A>T	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
NOTCH2	4853	broad.mit.edu	37	1	120501870	120501870	+	Intron	SNP	T	G	G			2011-2267:2012-369-T	g.chr1:120501870T>G	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
ADARB2	105	broad.mit.edu	37	10	1281952	1281952	+	Intron	SNP	T	C	C			2011-2267:2012-369-T	g.chr10:1281952T>C	uc009xhq.2	-							NM_018702	NP_061172
CUBN	8029	broad.mit.edu	37	10	16979590	16979590	+	Splice_Site	SNP	C	A	A			2011-2267:2012-369-T	g.chr10:16979590C>A	uc001ioo.2	-	39	5978	c.5926_splice	c.e39+1	p.G1976_splice		NM_001081	NP_001072
WT1	7490	broad.mit.edu	37	11	32414276	32414276	+	Missense_Mutation	SNP	G	C	C			2011-2267:2012-369-T	g.chr11:32414276G>C	uc001mtn.1	-	8	1471	c.1275C>G	c.(1273-1275)TTC>TTG	p.F425L	WT1_uc001mtl.1_Missense_Mutation_p.F213L|WT1_uc001mtm.1_Missense_Mutation_p.F196L|WT1_uc001mto.1_Missense_Mutation_p.F425L|WT1_uc001mtp.1_Missense_Mutation_p.F408L|WT1_uc001mtq.1_Missense_Mutation_p.F408L|WT1_uc009yjs.1_RNA	NM_024426	NP_077744
ABCD2	225	broad.mit.edu	37	12	40013336	40013336	+	Missense_Mutation	SNP	C	A	A			2011-2267:2012-369-T	g.chr12:40013336C>A	uc001rmb.2	-	1	508	c.82G>T	c.(82-84)GCT>TCT	p.A28S		NM_005164	NP_005155
COL4A2	1284	broad.mit.edu	37	13	111133728	111133728	+	Intron	SNP	C	T	T			2011-2267:2012-369-T	g.chr13:111133728C>T	uc001vqx.2	+							NM_001846	NP_001837
LMF1	64788	broad.mit.edu	37	16	908300	908300	+	Intron	SNP	A	G	G	rs146777801		2011-2267:2012-369-T	g.chr16:908300A>G	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
BAIAP3	8938	broad.mit.edu	37	16	1389867	1389867	+	Intron	SNP	C	T	T			2011-2267:2012-369-T	g.chr16:1389867C>T	uc002clk.1	+						BAIAP3_uc002clj.2_Intron|BAIAP3_uc010uuz.1_Intron|BAIAP3_uc010uva.1_Intron|BAIAP3_uc010uvb.1_Intron|BAIAP3_uc010uvc.1_Intron	NM_003933	NP_003924
CORO7	79585	broad.mit.edu	37	16	4394828	4394828	+	Intron	SNP	A	G	G			2011-2267:2012-369-T	g.chr16:4394828A>G	uc002cwf.2	-						CORO7_uc002cwe.2_Intron|TIMM16_uc002cwd.2_Intron	NM_024535	NP_078811
PALB2	79728	broad.mit.edu	37	16	23637869	23637869	+	Intron	SNP	T	A	A			2011-2267:2012-369-T	g.chr16:23637869T>A	uc002dlx.1	-							NM_024675	NP_078951
HYDIN	54768	broad.mit.edu	37	16	70843895	70843895	+	Missense_Mutation	SNP	C	T	T			2011-2267:2012-369-T	g.chr16:70843895C>T	uc002ezr.2	-	85	14799	c.14671G>A	c.(14671-14673)GAA>AAA	p.E4891K	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210
HYDIN	54768	broad.mit.edu	37	16	70926318	70926318	+	Missense_Mutation	SNP	G	C	C			2011-2267:2012-369-T	g.chr16:70926318G>C	uc002ezr.2	-	56	9488	c.9360C>G	c.(9358-9360)TTC>TTG	p.F3120L		NM_032821	NP_116210
BRCA1	672	broad.mit.edu	37	17	41243190	41243190	+	Intron	SNP	T	G	G	rs799916	by1000genomes	2011-2267:2012-369-T	g.chr17:41243190T>G	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_3'UTR	NM_007294	NP_009225
RTTN	25914	broad.mit.edu	37	18	67679220	67679220	+	Intron	SNP	G	C	C			2011-2267:2012-369-T	g.chr18:67679220G>C	uc002lkp.2	-						RTTN_uc002lko.2_Intron|RTTN_uc010xfb.1_Intron|RTTN_uc002lkn.2_Intron|RTTN_uc010dqp.2_Intron	NM_173630	NP_775901
NOTCH3	4854	broad.mit.edu	37	19	15299700	15299700	+	Intron	SNP	C	G	G			2011-2267:2012-369-T	g.chr19:15299700C>G	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
NLRP12	91662	broad.mit.edu	37	19	54311027	54311027	+	Intron	SNP	G	A	A			2011-2267:2012-369-T	g.chr19:54311027G>A	uc002qch.3	-						NLRP12_uc010eqw.2_5'UTR|NLRP12_uc002qci.3_Intron|NLRP12_uc002qcj.3_Intron|NLRP12_uc002qck.3_Intron|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288
CUL3	8452	broad.mit.edu	37	2	225370592	225370592	+	Intron	SNP	C	T	T			2011-2267:2012-369-T	g.chr2:225370592C>T	uc002vny.2	-						CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Intron	NM_003590	NP_003581
KCNQ2	3785	broad.mit.edu	37	20	62093446	62093446	+	Intron	SNP	A	G	G			2011-2267:2012-369-T	g.chr20:62093446A>G	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron|KCNQ2_uc002yfc.1_Intron	NM_172107	NP_742105
TPTE	7179	broad.mit.edu	37	21	10996134	10996134	+	RNA	SNP	C	A	A			2011-2267:2012-369-T	g.chr21:10996134C>A	uc002yis.1	-	12		c.2052G>T					
BAGE2	85319	broad.mit.edu	37	21	11040737	11040737	+	Intron	SNP	G	A	A			2011-2267:2012-369-T	g.chr21:11040737G>A	uc002yit.1	-						TPTE_uc002yis.1_5'Flank	NM_182482	NP_872288
ANKRD17	26057	broad.mit.edu	37	4	74013139	74013139	+	Silent	SNP	G	T	T			2011-2267:2012-369-T	g.chr4:74013139G>T	uc003hgp.2	-	9	1695	c.1578C>A	c.(1576-1578)ATC>ATA	p.I526I	ANKRD17_uc003hgo.2_Silent_p.I413I|ANKRD17_uc003hgq.2_Silent_p.I526I|ANKRD17_uc003hgr.2_Silent_p.I526I|ANKRD17_uc011cbd.1_Intron	NM_032217	NP_115593
MEF2C	4208	broad.mit.edu	37	5	88024978	88024978	+	Intron	SNP	C	G	G			2011-2267:2012-369-T	g.chr5:88024978C>G	uc003kjj.2	-						MEF2C_uc003kji.2_Intron|MEF2C_uc003kjk.2_Intron|MEF2C_uc003kjm.2_Intron|MEF2C_uc003kjl.2_Intron	NM_002397	NP_002388
RUFY1	80230	broad.mit.edu	37	5	178986999	178986999	+	Intron	SNP	G	A	A			2011-2267:2012-369-T	g.chr5:178986999G>A	uc003mka.1	+						RUFY1_uc003mkb.1_Intron|RUFY1_uc003mkc.1_5'UTR	NM_025158	NP_079434
BPHL	670	broad.mit.edu	37	6	3146447	3146447	+	Intron	SNP	G	T	T	rs71547247		2011-2267:2012-369-T	g.chr6:3146447G>T	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
TAP2	6891	broad.mit.edu	37	6	32806576	32806576	+	5'Flank	SNP	C	T	T	rs4148869	by1000genomes	2011-2267:2012-369-T	g.chr6:32806576C>T	uc003occ.2	-						TAP2_uc011dqf.1_5'Flank|TAP2_uc003ocb.1_5'Flank|TAP2_uc003ocd.2_5'Flank	NM_018833	NP_061313
TAP2	6891	broad.mit.edu	37	6	32806584	32806584	+	5'Flank	SNP	G	A	A	rs111265318		2011-2267:2012-369-T	g.chr6:32806584G>A	uc003occ.2	-						TAP2_uc011dqf.1_5'Flank|TAP2_uc003ocb.1_5'Flank|TAP2_uc003ocd.2_5'Flank	NM_018833	NP_061313
EPHA7	2045	broad.mit.edu	37	6	93969049	93969049	+	Intron	SNP	C	T	T			2011-2267:2012-369-T	g.chr6:93969049C>T	uc003poe.2	-						EPHA7_uc003pof.2_Intron|EPHA7_uc011eac.1_Intron	NM_004440	NP_004431
SYNE1	23345	broad.mit.edu	37	6	152644743	152644743	+	Nonsense_Mutation	SNP	G	A	A			2011-2267:2012-369-T	g.chr6:152644743G>A	uc010kiw.2	-	82	16389	c.15787C>T	c.(15787-15789)CAG>TAG	p.Q5263*	SYNE1_uc003qot.3_Nonsense_Mutation_p.Q5192*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Q5263*|SYNE1_uc010kiz.2_Nonsense_Mutation_p.Q1018*	NM_182961	NP_892006
C7orf50	84310	broad.mit.edu	37	7	1055717	1055717	+	Intron	SNP	A	G	G	rs71020556		2011-2267:2012-369-T	g.chr7:1055717A>G	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
KIAA1549	57670	broad.mit.edu	37	7	138583641	138583641	+	Intron	SNP	C	T	T			2011-2267:2012-369-T	g.chr7:138583641C>T	uc011kql.1	-						KIAA1549_uc011kqi.1_Intron|KIAA1549_uc003vuk.3_Intron|KIAA1549_uc011kqj.1_Intron|KIAA1549_uc011kqk.1_Intron	NM_020910	NP_065961
ARHGEF10	9639	broad.mit.edu	37	8	1787445	1787445	+	Intron	SNP	G	A	A	rs111709184		2011-2267:2012-369-T	g.chr8:1787445G>A	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
PKHD1L1	93035	broad.mit.edu	37	8	110457938	110457938	+	Intron	SNP	T	C	C			2011-2267:2012-369-T	g.chr8:110457938T>C	uc003yne.2	+							NM_177531	NP_803875
HUWE1	10075	broad.mit.edu	37	X	53564649	53564649	+	Missense_Mutation	SNP	C	T	T			2011-2267:2012-369-T	g.chrX:53564649C>T	uc004dsp.2	-	78	12407	c.12005G>A	c.(12004-12006)CGC>CAC	p.R4002H	HUWE1_uc004dsn.2_Missense_Mutation_p.R2810H|HUWE1_uc004dsq.1_Missense_Mutation_p.R302H	NM_031407	NP_113584
HUWE1	10075	broad.mit.edu	37	X	53565687	53565687	+	Intron	SNP	T	A	A			2011-2267:2012-369-T	g.chrX:53565687T>A	uc004dsp.2	-						HUWE1_uc004dsn.2_Intron|HUWE1_uc004dsq.1_Intron	NM_031407	NP_113584
NBPF1	55672	broad.mit.edu	37	1	16914385	16914385	+	Intron	SNP	A	G	G			2011-2268:2012-368-T	g.chr1:16914385A>G	uc009vos.1	-						NBPF1_uc009vot.1_5'Flank|NBPF1_uc001ayz.1_5'Flank|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
MACF1	23499	broad.mit.edu	37	1	39898718	39898718	+	Splice_Site	SNP	A	G	G			2011-2268:2012-368-T	g.chr1:39898718A>G	uc010oiu.1	+	32	12909	c.12778_splice	c.e32-2	p.A4260_splice	MACF1_uc010ois.1_Splice_Site_p.A3758_splice|MACF1_uc001cda.1_Splice_Site_p.A3645_splice|MACF1_uc001cdc.1_Splice_Site_p.A2715_splice	NM_033044	NP_149033
CDKN2C	1031	broad.mit.edu	37	1	51435364	51435364	+	5'UTR	SNP	G	A	A			2011-2268:2012-368-T	g.chr1:51435364G>A	uc001csf.2	+	1					CDKN2C_uc001csg.2_5'Flank	NM_001262	NP_001253
FLG	2312	broad.mit.edu	37	1	152276776	152276776	+	Missense_Mutation	SNP	G	A	A			2011-2268:2012-368-T	g.chr1:152276776G>A	uc001ezu.1	-	3	10622	c.10586C>T	c.(10585-10587)CCC>CTC	p.P3529L		NM_002016	NP_002007
ASH1L	55870	broad.mit.edu	37	1	155308222	155308222	+	Intron	SNP	G	T	T			2011-2268:2012-368-T	g.chr1:155308222G>T	uc009wqq.2	-						RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Intron	NM_018489	NP_060959
CUBN	8029	broad.mit.edu	37	10	16878328	16878328	+	Silent	SNP	T	A	A			2011-2268:2012-368-T	g.chr10:16878328T>A	uc001ioo.2	-	63	10138	c.10086A>T	c.(10084-10086)CCA>CCT	p.P3362P		NM_001081	NP_001072
CCND1	595	broad.mit.edu	37	11	69455951	69455951	+	5'UTR	SNP	G	T	T			2011-2268:2012-368-T	g.chr11:69455951G>T	uc001opa.2	+	1						NM_053056	NP_444284
TPP2	7174	broad.mit.edu	37	13	103287811	103287811	+	Intron	SNP	T	A	A			2011-2268:2012-368-T	g.chr13:103287811T>A	uc001vpi.3	+							NM_003291	NP_003282
RASA3	22821	broad.mit.edu	37	13	114794276	114794276	+	Intron	SNP	G	A	A			2011-2268:2012-368-T	g.chr13:114794276G>A	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron|RASA3_uc010aha.1_Intron	NM_007368	NP_031394
SYNE2	23224	broad.mit.edu	37	14	64678697	64678697	+	Missense_Mutation	SNP	G	A	A			2011-2268:2012-368-T	g.chr14:64678697G>A	uc001xgm.2	+	104	18972	c.18742G>A	c.(18742-18744)GAA>AAA	p.E6248K	SYNE2_uc001xgl.2_Missense_Mutation_p.E6248K|SYNE2_uc010apy.2_Missense_Mutation_p.E2633K|SYNE2_uc001xgn.2_Missense_Mutation_p.E1210K|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.E218K|SYNE2_uc001xgq.2_Missense_Mutation_p.E613K|SYNE2_uc001xgr.2_Missense_Mutation_p.E31K|SYNE2_uc010tsi.1_5'Flank|SYNE2_uc001xgs.2_5'Flank	NM_015180	NP_055995
DICER1	23405	broad.mit.edu	37	14	95560626	95560626	+	Intron	SNP	T	C	C			2011-2268:2012-368-T	g.chr14:95560626T>C	uc001ydw.2	-						DICER1_uc010avh.1_Intron|DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron	NM_030621	NP_085124
RHCG	51458	broad.mit.edu	37	15	90018051	90018051	+	Intron	SNP	G	T	T			2011-2268:2012-368-T	g.chr15:90018051G>T	uc002bnz.2	-						RHCG_uc002bny.2_Intron|RHCG_uc002boa.2_Intron	NM_016321	NP_057405
BLM	641	broad.mit.edu	37	15	91358461	91358461	+	Silent	SNP	G	T	T			2011-2268:2012-368-T	g.chr15:91358461G>T	uc002bpr.2	+	22	4303	c.4206G>T	c.(4204-4206)CCG>CCT	p.P1402P	BLM_uc010uqh.1_Silent_p.P1402P|BLM_uc010uqi.1_Silent_p.P1027P|BLM_uc010bnx.2_Silent_p.P1271P|BLM_uc002bpt.2_Silent_p.P377P	NM_000057	NP_000048
DNAH3	55567	broad.mit.edu	37	16	21157271	21157271	+	Intron	SNP	C	G	G			2011-2268:2012-368-T	g.chr16:21157271C>G	uc010vbe.1	-						DNAH3_uc002die.2_Intron	NM_017539	NP_060009
TP53	7157	broad.mit.edu	37	17	7577107	7577107	+	Nonsense_Mutation	SNP	A	T	T			2011-2268:2012-368-T	g.chr17:7577107A>T	uc002gim.2	-	8	1025	c.831T>A	c.(829-831)TGT>TGA	p.C277*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.C277*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.C145*|TP53_uc010cng.1_Nonsense_Mutation_p.C145*|TP53_uc002gii.1_Nonsense_Mutation_p.C145*|TP53_uc010cnh.1_Nonsense_Mutation_p.C277*|TP53_uc010cni.1_Nonsense_Mutation_p.C277*|TP53_uc002gij.2_Nonsense_Mutation_p.C277*	NM_001126112	NP_001119584
PRKCA	5578	broad.mit.edu	37	17	64795388	64795388	+	Intron	SNP	G	T	T			2011-2268:2012-368-T	g.chr17:64795388G>T	uc002jfp.1	+							NM_002737	NP_002728
ZNF521	25925	broad.mit.edu	37	18	22805157	22805157	+	Missense_Mutation	SNP	G	T	T			2011-2268:2012-368-T	g.chr18:22805157G>T	uc002kvk.2	-	4	2972	c.2725C>A	c.(2725-2727)CAC>AAC	p.H909N	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.H909N|ZNF521_uc002kvl.2_Missense_Mutation_p.H689N	NM_015461	NP_056276
PLIN5	440503	broad.mit.edu	37	19	4525833	4525833	+	Missense_Mutation	SNP	C	T	T			2011-2268:2012-368-T	g.chr19:4525833C>T	uc002mas.2	-	6	585	c.532G>A	c.(532-534)GCT>ACT	p.A178T		NM_001013706	NP_001013728
GREB1	9687	broad.mit.edu	37	2	11777208	11777208	+	Intron	SNP	G	A	A			2011-2268:2012-368-T	g.chr2:11777208G>A	uc002rbk.1	+						GREB1_uc002rbp.1_Intron	NM_014668	NP_055483
RMND5A	64795	broad.mit.edu	37	2	87656752	87656752	+	Intron	SNP	C	T	T			2011-2268:2012-368-T	g.chr2:87656752C>T	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141055348	141055348	+	Intron	SNP	G	A	A			2011-2268:2012-368-T	g.chr2:141055348G>A	uc002tvj.1	-							NM_018557	NP_061027
PRDM15	63977	broad.mit.edu	37	21	43226494	43226494	+	Intron	SNP	T	C	C			2011-2268:2012-368-T	g.chr21:43226494T>C	uc002yzq.1	-						PRDM15_uc002yzo.2_Intron|PRDM15_uc002yzp.2_Intron|PRDM15_uc002yzr.1_Intron	NM_022115	NP_071398
C21orf56	84221	broad.mit.edu	37	21	47590621	47590621	+	Intron	SNP	G	A	A			2011-2268:2012-368-T	g.chr21:47590621G>A	uc011afu.1	-						C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
EFCAB6	64800	broad.mit.edu	37	22	44004465	44004465	+	Missense_Mutation	SNP	C	T	T	rs55698170	byFrequency	2011-2268:2012-368-T	g.chr22:44004465C>T	uc003bdy.1	-	22	2793	c.2578G>A	c.(2578-2580)GAT>AAT	p.D860N	EFCAB6_uc003bdz.1_Missense_Mutation_p.D708N|EFCAB6_uc010gzi.1_Missense_Mutation_p.D708N|EFCAB6_uc010gzj.1_Intron	NM_022785	NP_073622
SETD2	29072	broad.mit.edu	37	3	47087979	47087979	+	Missense_Mutation	SNP	G	A	A			2011-2268:2012-368-T	g.chr3:47087979G>A	uc003cqs.2	-	16	7149	c.7096C>T	c.(7096-7098)CCA>TCA	p.P2366S	SETD2_uc003cqv.2_Missense_Mutation_p.P2433S|SETD2_uc003cqr.2_5'UTR	NM_014159	NP_054878
PBRM1	55193	broad.mit.edu	37	3	52637597	52637597	+	Nonsense_Mutation	SNP	T	A	A			2011-2268:2012-368-T	g.chr3:52637597T>A	uc003des.2	-	17	2731	c.2719A>T	c.(2719-2721)AAG>TAG	p.K907*	PBRM1_uc003dex.2_Intron|PBRM1_uc003deq.2_Nonsense_Mutation_p.K907*|PBRM1_uc003der.2_Nonsense_Mutation_p.K875*|PBRM1_uc003det.2_Nonsense_Mutation_p.K922*|PBRM1_uc003deu.2_Nonsense_Mutation_p.K922*|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Nonsense_Mutation_p.K907*|PBRM1_uc010hmk.1_Nonsense_Mutation_p.K907*|PBRM1_uc003dey.2_Nonsense_Mutation_p.K907*|PBRM1_uc003dez.1_Nonsense_Mutation_p.K907*|PBRM1_uc003dfb.1_Nonsense_Mutation_p.K820*|PBRM1_uc003dfa.1_Nonsense_Mutation_p.K253*	NM_181042	NP_060635
GABRA4	2557	broad.mit.edu	37	4	46995571	46995571	+	5'UTR	SNP	C	G	G			2011-2268:2012-368-T	g.chr4:46995571C>G	uc003gxg.2	-	1						NM_000809	NP_000800
TRIO	7204	broad.mit.edu	37	5	14304706	14304706	+	Intron	SNP	G	A	A			2011-2268:2012-368-T	g.chr5:14304706G>A	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc011cna.1_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
CDH9	1007	broad.mit.edu	37	5	26886149	26886149	+	Missense_Mutation	SNP	C	T	T			2011-2268:2012-368-T	g.chr5:26886149C>T	uc003jgs.1	-	10	1725	c.1556G>A	c.(1555-1557)CGA>CAA	p.R519Q	CDH9_uc011cnv.1_Missense_Mutation_p.R112Q	NM_016279	NP_057363
MEF2C	4208	broad.mit.edu	37	5	88119612	88119612	+	5'UTR	SNP	C	T	T			2011-2268:2012-368-T	g.chr5:88119612C>T	uc003kjj.2	-	2					MEF2C_uc003kji.2_5'UTR|MEF2C_uc003kjk.2_5'UTR|MEF2C_uc003kjm.2_5'UTR|MEF2C_uc003kjl.2_5'UTR	NM_002397	NP_002388
ROS1	6098	broad.mit.edu	37	6	117678010	117678010	+	Missense_Mutation	SNP	G	T	T			2011-2268:2012-368-T	g.chr6:117678010G>T	uc003pxp.1	-	25	4122	c.3923C>A	c.(3922-3924)ACC>AAC	p.T1308N	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
UBR5	51366	broad.mit.edu	37	8	103289330	103289330	+	Missense_Mutation	SNP	C	A	A	rs141886654	byFrequency	2011-2268:2012-368-T	g.chr8:103289330C>A	uc003ykr.1	-	45	6412	c.6379G>T	c.(6379-6381)GTG>TTG	p.V2127L	UBR5_uc003yks.1_Missense_Mutation_p.V2127L	NM_015902	NP_056986
UBR5	51366	broad.mit.edu	37	8	103358590	103358590	+	Missense_Mutation	SNP	C	A	A			2011-2268:2012-368-T	g.chr8:103358590C>A	uc003ykr.1	-	7	643	c.610G>T	c.(610-612)GTC>TTC	p.V204F	UBR5_uc003yks.1_Missense_Mutation_p.V204F	NM_015902	NP_056986
CSMD3	114788	broad.mit.edu	37	8	113529446	113529446	+	Missense_Mutation	SNP	C	A	A			2011-2268:2012-368-T	g.chr8:113529446C>A	uc003ynu.2	-	28	4732	c.4573G>T	c.(4573-4575)GCC>TCC	p.A1525S	CSMD3_uc003yns.2_Missense_Mutation_p.A797S|CSMD3_uc003ynt.2_Missense_Mutation_p.A1485S|CSMD3_uc011lhx.1_Missense_Mutation_p.A1421S	NM_198123	NP_937756
TSC1	7248	broad.mit.edu	37	9	135786685	135786685	+	Intron	SNP	C	T	T			2011-2268:2012-368-T	g.chr9:135786685C>T	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron|TSC1_uc011mcs.1_Intron|TSC1_uc004ccc.1_Intron|TSC1_uc004ccd.2_3'UTR|TSC1_uc004cce.1_3'UTR	NM_000368	NP_000359
EHMT1	79813	broad.mit.edu	37	9	140610954	140610954	+	Intron	SNP	T	G	G			2011-2268:2012-368-T	g.chr9:140610954T>G	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
NRK	203447	broad.mit.edu	37	X	105178187	105178187	+	Intron	SNP	G	T	T			2011-2268:2012-368-T	g.chrX:105178187G>T	uc004emd.2	+						NRK_uc010npc.1_Intron	NM_198465	NP_940867
NOTCH2	4853	broad.mit.edu	37	1	120506032	120506032	+	Intron	SNP	G	A	A	rs17024577	by1000genomes	2011-2269:2012-1328-T	g.chr1:120506032G>A	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
ATM	472	broad.mit.edu	37	11	108143414	108143414	+	Intron	SNP	C	G	G			2011-2269:2012-1328-T	g.chr11:108143414C>G	uc001pkb.1	+						ATM_uc009yxr.1_Intron	NM_000051	NP_000042
FLT3	2322	broad.mit.edu	37	13	28589267	28589267	+	Intron	SNP	C	T	T	rs4073630	by1000genomes	2011-2269:2012-1328-T	g.chr13:28589267C>T	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
BRCA2	675	broad.mit.edu	37	13	32890572	32890572	+	5'UTR	SNP	G	A	A	rs1799943	byFrequency;by1000genomes	2011-2269:2012-1328-T	g.chr13:32890572G>A	uc001uub.1	+	2					BRCA2_uc001uua.1_5'UTR	NM_000059	NP_000050
MCF2L	23263	broad.mit.edu	37	13	113665841	113665841	+	Intron	SNP	T	G	G			2011-2269:2012-1328-T	g.chr13:113665841T>G	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron	NM_001112732	NP_001106203
F7	2155	broad.mit.edu	37	13	113763208	113763208	+	Intron	SNP	G	T	T			2011-2269:2012-1328-T	g.chr13:113763208G>T	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
SYNE2	23224	broad.mit.edu	37	14	64340746	64340746	+	Intron	SNP	A	T	T			2011-2269:2012-1328-T	g.chr14:64340746A>T	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64408309	64408309	+	Intron	SNP	C	T	T			2011-2269:2012-1328-T	g.chr14:64408309C>T	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64498136	64498136	+	Intron	SNP	C	G	G			2011-2269:2012-1328-T	g.chr14:64498136C>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
CREBBP	1387	broad.mit.edu	37	16	3807936	3807936	+	Silent	SNP	G	A	A			2011-2269:2012-1328-T	g.chr16:3807936G>A	uc002cvv.2	-	18	3687	c.3483C>T	c.(3481-3483)TTC>TTT	p.F1161F	CREBBP_uc002cvw.2_Silent_p.F1123F	NM_004380	NP_004371
TP53	7157	broad.mit.edu	37	17	7577105	7577105	+	Missense_Mutation	SNP	G	A	A			2011-2269:2012-1328-T	g.chr17:7577105G>A	uc002gim.2	-	8	1027	c.833C>T	c.(832-834)CCT>CTT	p.P278L	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.P278L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P146L|TP53_uc010cng.1_Missense_Mutation_p.P146L|TP53_uc002gii.1_Missense_Mutation_p.P146L|TP53_uc010cnh.1_Missense_Mutation_p.P278L|TP53_uc010cni.1_Missense_Mutation_p.P278L|TP53_uc002gij.2_Missense_Mutation_p.P278L	NM_001126112	NP_001119584
MYH13	8735	broad.mit.edu	37	17	10219211	10219211	+	Intron	SNP	C	G	G			2011-2269:2012-1328-T	g.chr17:10219211C>G	uc002gmk.1	-							NM_003802	NP_003793
NF1	4763	broad.mit.edu	37	17	29653293	29653293	+	Intron	SNP	T	C	C	rs9894648	by1000genomes	2011-2269:2012-1328-T	g.chr17:29653293T>C	uc002hgg.2	+						NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron|NF1_uc010cso.2_Intron	NM_001042492	NP_001035957
PHLPP1	23239	broad.mit.edu	37	18	60645152	60645152	+	Intron	SNP	G	C	C			2011-2269:2012-1328-T	g.chr18:60645152G>C	uc002lis.2	+							NM_194449	NP_919431
LILRB1	10859	broad.mit.edu	37	19	55144048	55144048	+	Missense_Mutation	SNP	C	A	A			2011-2269:2012-1328-T	g.chr19:55144048C>A	uc002qgj.2	+	7	1135	c.795C>A	c.(793-795)TTC>TTA	p.F265L	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.F265L|LILRB1_uc002qgk.2_Missense_Mutation_p.F265L|LILRB1_uc002qgm.2_Missense_Mutation_p.F265L|LILRB1_uc010erq.2_Missense_Mutation_p.F265L|LILRB1_uc010err.2_RNA	NM_006669	NP_006660
MSH6	2956	broad.mit.edu	37	2	48028320	48028320	+	Intron	SNP	C	G	G			2011-2269:2012-1328-T	g.chr2:48028320C>G	uc002rwd.3	+						MSH6_uc002rwc.2_Silent_p.L1066L|MSH6_uc010fbj.2_Intron|MSH6_uc010yoi.1_Intron|MSH6_uc010yoj.1_Intron	NM_000179	NP_000170
LRP1B	53353	broad.mit.edu	37	2	141533573	141533573	+	Intron	SNP	A	G	G	rs13009144	by1000genomes	2011-2269:2012-1328-T	g.chr2:141533573A>G	uc002tvj.1	-							NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179440286	179440286	+	Missense_Mutation	SNP	C	G	G			2011-2269:2012-1328-T	g.chr2:179440286C>G	uc010zfg.1	-	275	63093	c.62869G>C	c.(62869-62871)GAG>CAG	p.E20957Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E14652Q|TTN_uc010zfi.1_Missense_Mutation_p.E14585Q|TTN_uc010zfj.1_Missense_Mutation_p.E14460Q	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179575562	179575562	+	Missense_Mutation	SNP	G	A	A			2011-2269:2012-1328-T	g.chr2:179575562G>A	uc010zfg.1	-	95	24754	c.24530C>T	c.(24529-24531)ACG>ATG	p.T8177M	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.T4838M	NM_133378	NP_596869
CASP8	841	broad.mit.edu	37	2	202151163	202151163	+	Intron	SNP	A	G	G	rs3769818	by1000genomes	2011-2269:2012-1328-T	g.chr2:202151163A>G	uc002uxr.1	+						CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc002uxw.1_Intron|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Intron	NM_033355	NP_203519
PAK7	57144	broad.mit.edu	37	20	9546560	9546560	+	Nonsense_Mutation	SNP	G	A	A			2011-2269:2012-1328-T	g.chr20:9546560G>A	uc002wnl.2	-	6	2007	c.1462C>T	c.(1462-1464)CGA>TGA	p.R488*	PAK7_uc002wnk.2_Nonsense_Mutation_p.R488*|PAK7_uc002wnj.2_Nonsense_Mutation_p.R488*|PAK7_uc010gby.1_Nonsense_Mutation_p.R488*	NM_020341	NP_065074
CHRNA4	1137	broad.mit.edu	37	20	61985754	61985754	+	Intron	SNP	G	A	A			2011-2269:2012-1328-T	g.chr20:61985754G>A	uc002yes.2	-						CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_Intron|CHRNA4_uc010gke.1_Intron|CHRNA4_uc002yev.1_Intron|CHRNA4_uc010gkf.1_Intron	NM_000744	NP_000735
COL18A1	80781	broad.mit.edu	37	21	46863013	46863013	+	Intron	SNP	C	T	T	rs144191567	by1000genomes	2011-2269:2012-1328-T	g.chr21:46863013C>T	uc002zhg.2	+							NM_130445	NP_569712
KDR	3791	broad.mit.edu	37	4	55981484	55981484	+	Silent	SNP	G	T	T			2011-2269:2012-1328-T	g.chr4:55981484G>T	uc003has.2	-	4	755	c.453C>A	c.(451-453)CTC>CTA	p.L151L	KDR_uc003hat.1_Silent_p.L151L|KDR_uc011bzx.1_Silent_p.L151L	NM_002253	NP_002244
FAT1	2195	broad.mit.edu	37	4	187534542	187534542	+	Intron	SNP	T	C	C	rs2249926	by1000genomes	2011-2269:2012-1328-T	g.chr4:187534542T>C	uc003izf.2	-							NM_005245	NP_005236
TRIO	7204	broad.mit.edu	37	5	14270951	14270951	+	Missense_Mutation	SNP	G	C	C			2011-2269:2012-1328-T	g.chr5:14270951G>C	uc003jff.2	+	2	181	c.175G>C	c.(175-177)GAA>CAA	p.E59Q	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.E10Q	NM_007118	NP_009049
RASA1	5921	broad.mit.edu	37	5	86564995	86564995	+	Intron	SNP	T	A	A	rs3734000	by1000genomes	2011-2269:2012-1328-T	g.chr5:86564995T>A	uc003kiw.2	+						RASA1_uc010jav.2_Intron|RASA1_uc003kix.2_Intron|RASA1_uc011ctv.1_5'UTR|RASA1_uc011ctw.1_Intron|RASA1_uc010jaw.2_Intron|RASA1_uc011ctu.1_Intron	NM_002890	NP_002881
SLCO4C1	353189	broad.mit.edu	37	5	101627027	101627027	+	Intron	SNP	T	C	C	rs841929	by1000genomes	2011-2269:2012-1328-T	g.chr5:101627027T>C	uc003knm.2	-							NM_180991	NP_851322
FAT2	2196	broad.mit.edu	37	5	150946648	150946648	+	Silent	SNP	G	A	A			2011-2269:2012-1328-T	g.chr5:150946648G>A	uc003lue.3	-	1	1858	c.1845C>T	c.(1843-1845)TTC>TTT	p.F615F	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Silent_p.F615F	NM_001447	NP_001438
EPHA7	2045	broad.mit.edu	37	6	94120461	94120461	+	Missense_Mutation	SNP	G	A	A			2011-2269:2012-1328-T	g.chr6:94120461G>A	uc003poe.2	-	3	831	c.590C>T	c.(589-591)TCT>TTT	p.S197F	EPHA7_uc003pof.2_Missense_Mutation_p.S197F|EPHA7_uc011eac.1_Missense_Mutation_p.S197F|EPHA7_uc003pog.3_Missense_Mutation_p.S197F	NM_004440	NP_004431
SYNE1	23345	broad.mit.edu	37	6	152454298	152454298	+	Intron	SNP	G	A	A			2011-2269:2012-1328-T	g.chr6:152454298G>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SLC26A3	1811	broad.mit.edu	37	7	107443871	107443871	+	5'Flank	SNP	G	A	A	rs2301989	by1000genomes	2011-2269:2012-1328-T	g.chr7:107443871G>A	uc003ver.2	-						SLC26A3_uc003ves.2_5'Flank	NM_000111	NP_000102
CSMD3	114788	broad.mit.edu	37	8	113812435	113812435	+	Missense_Mutation	SNP	G	A	A			2011-2269:2012-1328-T	g.chr8:113812435G>A	uc003ynu.2	-	13	2087	c.1928C>T	c.(1927-1929)ACG>ATG	p.T643M	CSMD3_uc003ynt.2_Missense_Mutation_p.T603M|CSMD3_uc011lhx.1_Missense_Mutation_p.T539M	NM_198123	NP_937756
JAK2	3717	broad.mit.edu	37	9	5050910	5050910	+	Intron	SNP	C	T	T	rs7872649	by1000genomes	2011-2269:2012-1328-T	g.chr9:5050910C>T	uc010mhm.2	+						JAK2_uc003ziw.2_Intron	NM_004972	NP_004963
CDKN2A	1029	broad.mit.edu	37	9	21971108	21971108	+	Missense_Mutation	SNP	C	A	A	rs11552822		2011-2269:2012-1328-T	g.chr9:21971108C>A	uc003zpk.2	-	2	462	c.250G>T	c.(250-252)GAC>TAC	p.D84Y	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.R139L	NM_000077	NP_000068
NOTCH1	4851	broad.mit.edu	37	9	139403554	139403554	+	Intron	SNP	T	C	C	rs3124598	by1000genomes	2011-2269:2012-1328-T	g.chr9:139403554T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
CLCN4	1183	broad.mit.edu	37	X	10124520	10124520	+	5'Flank	SNP	C	G	G			2011-2269:2012-1328-T	g.chrX:10124520C>G	uc004csy.3	+						CLCN4_uc011mid.1_5'Flank	NM_001830	NP_001821
PRDM16	63976	broad.mit.edu	37	1	3187185	3187185	+	Intron	SNP	T	G	G	rs3002687	by1000genomes	2011-2270:2012-310-T	g.chr1:3187185T>G	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
ADARB2	105	broad.mit.edu	37	10	1493772	1493772	+	Intron	SNP	C	A	A			2011-2270:2012-310-T	g.chr10:1493772C>A	uc009xhq.2	-							NM_018702	NP_061172
H3F3C	440093	broad.mit.edu	37	12	31944855	31944855	+	Silent	SNP	C	G	G			2011-2270:2012-310-T	g.chr12:31944855C>G	uc001rkr.2	-	1	321	c.246G>C	c.(244-246)CTG>CTC	p.L82L		NM_001013699	NP_001013721
HYDIN	54768	broad.mit.edu	37	16	70867052	70867052	+	Intron	SNP	G	T	T			2011-2270:2012-310-T	g.chr16:70867052G>T	uc002ezr.2	-						HYDIN_uc010cfy.2_Intron	NM_032821	NP_116210
EP300	2033	broad.mit.edu	37	22	41565529	41565529	+	Missense_Mutation	SNP	G	A	A			2011-2270:2012-310-T	g.chr22:41565529G>A	uc003azl.3	+	26	4590	c.4195G>A	c.(4195-4197)GAT>AAT	p.D1399N		NM_001429	NP_001420
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2011-2270:2012-310-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
CDH9	1007	broad.mit.edu	37	5	26988176	26988176	+	Intron	SNP	C	T	T			2011-2270:2012-310-T	g.chr5:26988176C>T	uc003jgs.1	-						CDH9_uc010iug.2_Intron	NM_016279	NP_057363
GCM2	9247	broad.mit.edu	37	6	10875238	10875238	+	Intron	SNP	T	A	A	rs2076257	by1000genomes	2011-2270:2012-310-T	g.chr6:10875238T>A	uc003mzn.3	-						SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743
CNTNAP2	26047	broad.mit.edu	37	7	146805356	146805356	+	Missense_Mutation	SNP	G	T	T			2011-2270:2012-310-T	g.chr7:146805356G>T	uc003weu.1	+	5	1184	c.668G>T	c.(667-669)GGA>GTA	p.G223V		NM_014141	NP_054860
HOOK3	84376	broad.mit.edu	37	8	42828378	42828378	+	Intron	SNP	G	T	T			2011-2270:2012-310-T	g.chr8:42828378G>T	uc003xpr.2	+						HOOK3_uc010lxq.1_Intron	NM_032410	NP_115786
HEPH	9843	broad.mit.edu	37	X	65415174	65415174	+	Intron	SNP	T	G	G	rs2206203	by1000genomes	2011-2270:2012-310-T	g.chrX:65415174T>G	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
RGAG1	57529	broad.mit.edu	37	X	109698331	109698331	+	Intron	SNP	A	G	G			2011-2270:2012-310-T	g.chrX:109698331A>G	uc004eor.1	+							NM_020769	NP_065820
KIF1B	23095	broad.mit.edu	37	1	10435170	10435170	+	Intron	SNP	T	C	C	rs11121551	by1000genomes	2011-2271:2012-328-T	g.chr1:10435170T>C	uc001aqx.3	+						KIF1B_uc001aqw.3_Intron|KIF1B_uc001aqy.2_Intron|KIF1B_uc001aqz.2_Intron|KIF1B_uc001ara.2_Intron|KIF1B_uc001arb.2_Intron	NM_015074	NP_055889
C1orf173	127254	broad.mit.edu	37	1	75086665	75086665	+	Intron	SNP	T	C	C	rs10493546	byFrequency;by1000genomes	2011-2271:2012-328-T	g.chr1:75086665T>C	uc001dgg.2	-						uc001dgh.2_Intron|C1orf173_uc001dgi.3_Intron	NM_001002912	NP_001002912
COL11A1	1301	broad.mit.edu	37	1	103548319	103548319	+	Intron	SNP	C	G	G	rs11164662	by1000genomes	2011-2271:2012-328-T	g.chr1:103548319C>G	uc001dul.2	-						COL11A1_uc001dum.2_Intron|COL11A1_uc001dun.2_Intron|COL11A1_uc009weh.2_Intron	NM_001854	NP_001845
USH2A	7399	broad.mit.edu	37	1	216595346	216595346	+	Silent	SNP	T	C	C			2011-2271:2012-328-T	g.chr1:216595346T>C	uc001hku.1	-	2	720	c.333A>G	c.(331-333)CCA>CCG	p.P111P	USH2A_uc001hkv.2_Silent_p.P111P	NM_206933	NP_996816
LRRC56	115399	broad.mit.edu	37	11	542117	542117	+	Intron	SNP	A	G	G			2011-2271:2012-328-T	g.chr11:542117A>G	uc010qvz.1	+							NM_198075	NP_932341
TPCN2	219931	broad.mit.edu	37	11	68843990	68843990	+	Intron	SNP	G	A	A	rs35306535	by1000genomes	2011-2271:2012-328-T	g.chr11:68843990G>A	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_Intron	NM_139075	NP_620714
PIK3C2G	5288	broad.mit.edu	37	12	18499848	18499848	+	Intron	SNP	A	G	G			2011-2271:2012-328-T	g.chr12:18499848A>G	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron|PIK3C2G_uc010sib.1_Intron|PIK3C2G_uc010sic.1_Intron	NM_004570	NP_004561
MLL2	8085	broad.mit.edu	37	12	49446160	49446160	+	Nonsense_Mutation	SNP	C	A	A			2011-2271:2012-328-T	g.chr12:49446160C>A	uc001rta.3	-	10	1306	c.1306G>T	c.(1306-1308)GAG>TAG	p.E436*		NM_003482	NP_003473
TMEM132D	121256	broad.mit.edu	37	12	130343300	130343300	+	Intron	SNP	G	A	A	rs112941271		2011-2271:2012-328-T	g.chr12:130343300G>A	uc009zyl.1	-							NM_133448	NP_597705
ERCC5	2073	broad.mit.edu	37	13	103498545	103498545	+	5'UTR	SNP	C	T	T	rs2296148	by1000genomes	2011-2271:2012-328-T	g.chr13:103498545C>T	uc001vpw.2	+	1					ERCC5_uc001vpu.1_Intron|ERCC5_uc010tjb.1_5'UTR	NM_000123	NP_000114
SYNE2	23224	broad.mit.edu	37	14	64676932	64676932	+	Intron	SNP	G	T	T			2011-2271:2012-328-T	g.chr14:64676932G>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_Intron	NM_015180	NP_055995
NRXN3	9369	broad.mit.edu	37	14	80312067	80312067	+	Intron	SNP	G	C	C			2011-2271:2012-328-T	g.chr14:80312067G>C	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_Intron|NRXN3_uc001xuq.2_Intron|NRXN3_uc010asw.2_Intron|NRXN3_uc001xur.3_Intron	NM_004796	NP_004787
TP53	7157	broad.mit.edu	37	17	7577058	7577058	+	Nonsense_Mutation	SNP	C	A	A			2011-2271:2012-328-T	g.chr17:7577058C>A	uc002gim.2	-	8	1074	c.880G>T	c.(880-882)GAG>TAG	p.E294*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.E294*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.E162*|TP53_uc010cng.1_Nonsense_Mutation_p.E162*|TP53_uc002gii.1_Nonsense_Mutation_p.E162*|TP53_uc010cnh.1_Nonsense_Mutation_p.E294*|TP53_uc010cni.1_Nonsense_Mutation_p.E294*|TP53_uc002gij.2_Nonsense_Mutation_p.E294*	NM_001126112	NP_001119584
SMC6	79677	broad.mit.edu	37	2	17888457	17888457	+	Intron	SNP	G	A	A	rs6734462	by1000genomes	2011-2271:2012-328-T	g.chr2:17888457G>A	uc002rco.2	-						SMC6_uc010exo.2_Intron|SMC6_uc002rcn.2_Intron|SMC6_uc002rcp.1_Intron|SMC6_uc002rcq.2_Intron	NM_001142286	NP_001135758
TTN	7273	broad.mit.edu	37	2	179403593	179403593	+	Intron	SNP	G	A	A	rs2303539	by1000genomes	2011-2271:2012-328-T	g.chr2:179403593G>A	uc010zfg.1	-						uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179635919	179635919	+	Intron	SNP	C	T	T	rs13011633	by1000genomes	2011-2271:2012-328-T	g.chr2:179635919C>T	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002unb.2_Intron	NM_133378	NP_596869
CUL3	8452	broad.mit.edu	37	2	225368370	225368370	+	Missense_Mutation	SNP	T	A	A			2011-2271:2012-328-T	g.chr2:225368370T>A	uc002vny.2	-	9	1760	c.1376A>T	c.(1375-1377)AAG>ATG	p.K459M	CUL3_uc010zls.1_Missense_Mutation_p.K393M|CUL3_uc010fwy.1_Missense_Mutation_p.K465M	NM_003590	NP_003581
TPTE	7179	broad.mit.edu	37	21	10996134	10996134	+	RNA	SNP	C	A	A			2011-2271:2012-328-T	g.chr21:10996134C>A	uc002yis.1	-	12		c.2052G>T					
CLTCL1	8218	broad.mit.edu	37	22	19279619	19279619	+	5'Flank	SNP	C	T	T	rs114958160	by1000genomes	2011-2271:2012-328-T	g.chr22:19279619C>T	uc002zpb.2	-						CLTCL1_uc011agv.1_5'Flank|CLTCL1_uc011agw.1_5'Flank	NM_007098	NP_009029
MPPED1	758	broad.mit.edu	37	22	43892178	43892178	+	Intron	SNP	G	A	A			2011-2271:2012-328-T	g.chr22:43892178G>A	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
DSPP	1834	broad.mit.edu	37	4	88537378	88537378	+	Silent	SNP	T	C	C	rs138309721	by1000genomes	2011-2271:2012-328-T	g.chr4:88537378T>C	uc003hqu.2	+	5	3684	c.3564T>C	c.(3562-3564)GAT>GAC	p.D1188D		NM_014208	NP_055023
CDH12	1010	broad.mit.edu	37	5	21752395	21752395	+	Intron	SNP	T	G	G			2011-2271:2012-328-T	g.chr5:21752395T>G	uc010iuc.2	-						CDH12_uc011cno.1_Intron|CDH12_uc003jgk.2_Intron|uc003jgj.2_Intron	NM_004061	NP_004052
PCDHB11	56125	broad.mit.edu	37	5	140578910	140578910	+	5'Flank	SNP	G	T	T			2011-2271:2012-328-T	g.chr5:140578910G>T	uc003liy.2	+						PCDHB11_uc011daj.1_5'Flank	NM_018931	NP_061754
HLA-C	3107	broad.mit.edu	37	6	31239681	31239681	+	Intron	SNP	A	T	T	rs111542254		2011-2271:2012-328-T	g.chr6:31239681A>T	uc003nsy.2	-						HLA-C_uc011dnj.1_5'UTR|HLA-C_uc003nsx.2_5'UTR|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Intron|HLA-B_uc003ntf.2_Intron	NM_002117	NP_002108
PHIP	55023	broad.mit.edu	37	6	79695029	79695029	+	Intron	SNP	C	T	T	rs1890229	by1000genomes	2011-2271:2012-328-T	g.chr6:79695029C>T	uc003pir.2	-						PHIP_uc003piq.2_5'Flank|PHIP_uc011dyp.1_Intron	NM_017934	NP_060404
ZNF804B	219578	broad.mit.edu	37	7	88847586	88847586	+	Missense_Mutation	SNP	T	A	A			2011-2271:2012-328-T	g.chr7:88847586T>A	uc011khi.1	+	2	764	c.226T>A	c.(226-228)TCT>ACT	p.S76T		NM_181646	NP_857597
PIK3CG	5294	broad.mit.edu	37	7	106505478	106505478	+	5'Flank	SNP	G	A	A	rs4727666	by1000genomes	2011-2271:2012-328-T	g.chr7:106505478G>A	uc003vdv.3	+						PIK3CG_uc003vdu.2_5'Flank|PIK3CG_uc003vdw.2_5'Flank	NM_002649	NP_002640
RB1CC1	9821	broad.mit.edu	37	8	53573155	53573155	+	Splice_Site	SNP	C	T	T			2011-2271:2012-328-T	g.chr8:53573155C>T	uc003xre.3	-	12	2247	c.1689_splice	c.e12+1	p.C563_splice	RB1CC1_uc003xrf.3_Splice_Site_p.C563_splice	NM_014781	NP_055596
ZFHX4	79776	broad.mit.edu	37	8	77690337	77690337	+	Intron	SNP	G	A	A	rs11782906	by1000genomes	2011-2271:2012-328-T	g.chr8:77690337G>A	uc003yav.2	+						ZFHX4_uc003yau.1_Intron|ZFHX4_uc003yaw.1_Intron	NM_024721	NP_078997
NECAB1	64168	broad.mit.edu	37	8	91884780	91884780	+	Intron	SNP	C	T	T			2011-2271:2012-328-T	g.chr8:91884780C>T	uc011lgg.1	+							NM_022351	NP_071746
CSMD3	114788	broad.mit.edu	37	8	113960032	113960032	+	Missense_Mutation	SNP	C	T	T			2011-2271:2012-328-T	g.chr8:113960032C>T	uc003ynu.2	-	9	1654	c.1495G>A	c.(1495-1497)GGA>AGA	p.G499R	CSMD3_uc003ynt.2_Missense_Mutation_p.G459R|CSMD3_uc011lhx.1_Missense_Mutation_p.G395R	NM_198123	NP_937756
HEPH	9843	broad.mit.edu	37	X	65382685	65382685	+	5'UTR	SNP	T	C	C	rs5919015	by1000genomes	2011-2271:2012-328-T	g.chrX:65382685T>C	uc011moz.1	+	1					HEPH_uc004dwn.2_5'Flank|HEPH_uc004dwo.2_5'Flank|HEPH_uc010nkr.2_5'Flank	NM_138737	NP_620074
ODZ1	10178	broad.mit.edu	37	X	124097958	124097958	+	5'Flank	SNP	C	A	A			2011-2271:2012-328-T	g.chrX:124097958C>A	uc004euj.2	-						ODZ1_uc011muj.1_5'Flank|ODZ1_uc010nqy.2_5'Flank	NM_014253	NP_055068
NOTCH2	4853	broad.mit.edu	37	1	120596746	120596746	+	Intron	SNP	C	G	G			2011-2273:2012-370-T	g.chr1:120596746C>G	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
KIF26B	55083	broad.mit.edu	37	1	245607249	245607249	+	Intron	SNP	C	T	T			2011-2273:2012-370-T	g.chr1:245607249C>T	uc001ibf.1	+						KIF26B_uc010pyq.1_Intron	NM_018012	NP_060482
ADARB2	105	broad.mit.edu	37	10	1282029	1282029	+	Intron	SNP	C	A	A			2011-2273:2012-370-T	g.chr10:1282029C>A	uc009xhq.2	-							NM_018702	NP_061172
GPR123	84435	broad.mit.edu	37	10	134924835	134924835	+	Intron	SNP	C	A	A			2011-2273:2012-370-T	g.chr10:134924835C>A	uc001llx.3	+						GPR123_uc001llw.2_Intron	NM_001083909	NP_001077378
GPR123	84435	broad.mit.edu	37	10	134925339	134925339	+	Intron	SNP	C	A	A	rs28506134	by1000genomes	2011-2273:2012-370-T	g.chr10:134925339C>A	uc001llx.3	+						GPR123_uc001llw.2_Intron	NM_001083909	NP_001077378
AHNAK	79026	broad.mit.edu	37	11	62287137	62287137	+	Missense_Mutation	SNP	C	A	A			2011-2273:2012-370-T	g.chr11:62287137C>A	uc001ntl.2	-	5	15052	c.14752G>T	c.(14752-14754)GCT>TCT	p.A4918S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
LRTOMT	220074	broad.mit.edu	37	11	71792011	71792011	+	Intron	SNP	C	A	A			2011-2273:2012-370-T	g.chr11:71792011C>A	uc001orr.2	+						NUMA1_uc001ork.1_5'Flank|NUMA1_uc001orl.1_5'Flank|NUMA1_uc001orm.1_5'Flank|NUMA1_uc001oro.1_5'Flank|NUMA1_uc001orq.2_5'Flank|LRTOMT_uc009ysz.2_Intron|LRTOMT_uc010rqt.1_Intron|LRTOMT_uc010rqu.1_Intron|LRTOMT_uc009yta.2_Intron|LRTOMT_uc010rqv.1_Intron|LRTOMT_uc010rqw.1_Intron|LRTOMT_uc001ors.3_Intron|LRTOMT_uc010rqs.1_Intron	NM_145309	NP_660352
ABHD13	84945	broad.mit.edu	37	13	108881578	108881578	+	Silent	SNP	C	A	A			2011-2273:2012-370-T	g.chr13:108881578C>A	uc001vqq.2	+	2	277	c.12C>A	c.(10-12)TCC>TCA	p.S4S		NM_032859	NP_116248
ATP11A	23250	broad.mit.edu	37	13	113527295	113527295	+	Intron	SNP	G	C	C	rs79516245		2011-2273:2012-370-T	g.chr13:113527295G>C	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc010ago.2_Intron	NM_015205	NP_056020
LMF1	64788	broad.mit.edu	37	16	908795	908795	+	Intron	SNP	G	T	T			2011-2273:2012-370-T	g.chr16:908795G>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
RPH3AL	9501	broad.mit.edu	37	17	138572	138572	+	Intron	SNP	G	A	A			2011-2273:2012-370-T	g.chr17:138572G>A	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
MYH2	4620	broad.mit.edu	37	17	10447016	10447016	+	Intron	SNP	C	A	A			2011-2273:2012-370-T	g.chr17:10447016C>A	uc010coi.2	-						uc002gml.1_Intron|MYH2_uc002gmp.3_Intron|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582
PRKCA	5578	broad.mit.edu	37	17	64795560	64795560	+	Intron	SNP	G	A	A			2011-2273:2012-370-T	g.chr17:64795560G>A	uc002jfp.1	+							NM_002737	NP_002728
CACNG7	59284	broad.mit.edu	37	19	54427233	54427233	+	Intron	SNP	G	T	T			2011-2273:2012-370-T	g.chr19:54427233G>T	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
SNTG2	54221	broad.mit.edu	37	2	1104612	1104612	+	Intron	SNP	G	T	T			2011-2273:2012-370-T	g.chr2:1104612G>T	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
PXDN	7837	broad.mit.edu	37	2	1708121	1708121	+	Intron	SNP	A	G	G			2011-2273:2012-370-T	g.chr2:1708121A>G	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87633489	87633489	+	Intron	SNP	G	A	A			2011-2273:2012-370-T	g.chr2:87633489G>A	uc002srs.3	+								
MYT1	4661	broad.mit.edu	37	20	62809920	62809920	+	Intron	SNP	G	A	A	rs1763009		2011-2273:2012-370-T	g.chr20:62809920G>A	uc002yii.2	+						MYT1_uc002yih.2_Intron	NM_004535	NP_004526
MPPED1	758	broad.mit.edu	37	22	43892313	43892313	+	Intron	SNP	G	A	A			2011-2273:2012-370-T	g.chr22:43892313G>A	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
MPPED1	758	broad.mit.edu	37	22	43892319	43892319	+	Intron	SNP	G	A	A			2011-2273:2012-370-T	g.chr22:43892319G>A	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
MUC4	4585	broad.mit.edu	37	3	195502311	195502311	+	Intron	SNP	C	T	T			2011-2273:2012-370-T	g.chr3:195502311C>T	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
MUC4	4585	broad.mit.edu	37	3	195502436	195502436	+	Intron	SNP	C	A	A			2011-2273:2012-370-T	g.chr3:195502436C>A	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
SLC10A7	84068	broad.mit.edu	37	4	147207501	147207501	+	Intron	SNP	T	G	G			2011-2273:2012-370-T	g.chr4:147207501T>G	uc010ioz.2	-						SLC10A7_uc003ikr.2_Intron|SLC10A7_uc010ipa.2_Intron|SLC10A7_uc003iks.2_Intron	NM_001029998	NP_001025169
ADAMTS2	9509	broad.mit.edu	37	5	178562151	178562151	+	Intron	SNP	C	T	T			2011-2273:2012-370-T	g.chr5:178562151C>T	uc003mjw.2	-							NM_014244	NP_055059
PTPRN2	5799	broad.mit.edu	37	7	157355895	157355895	+	Intron	SNP	A	G	G			2011-2273:2012-370-T	g.chr7:157355895A>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|PTPRN2_uc003wnn.2_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158066168	158066168	+	Intron	SNP	G	A	A			2011-2273:2012-370-T	g.chr7:158066168G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158144777	158144777	+	Intron	SNP	C	G	G			2011-2273:2012-370-T	g.chr7:158144777C>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
UBR5	51366	broad.mit.edu	37	8	103358590	103358590	+	Missense_Mutation	SNP	C	A	A			2011-2273:2012-370-T	g.chr8:103358590C>A	uc003ykr.1	-	7	643	c.610G>T	c.(610-612)GTC>TTC	p.V204F	UBR5_uc003yks.1_Missense_Mutation_p.V204F	NM_015902	NP_056986
ZFP41	286128	broad.mit.edu	37	8	144342202	144342202	+	3'UTR	SNP	G	C	C			2011-2273:2012-370-T	g.chr8:144342202G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
ZFP41	286128	broad.mit.edu	37	8	144342275	144342275	+	3'UTR	SNP	C	T	T			2011-2273:2012-370-T	g.chr8:144342275C>T	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
ZFP41	286128	broad.mit.edu	37	8	144342309	144342309	+	3'UTR	SNP	C	T	T			2011-2273:2012-370-T	g.chr8:144342309C>T	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
KIF1B	23095	broad.mit.edu	37	1	10399979	10399979	+	Intron	SNP	C	A	A			2011-2275:2012-365-T	g.chr1:10399979C>A	uc001aqx.3	+						KIF1B_uc001aqw.3_Intron|KIF1B_uc001aqy.2_Intron|KIF1B_uc001aqz.2_Intron|KIF1B_uc001ara.2_Intron|KIF1B_uc001arb.2_Intron	NM_015074	NP_055889
CDH23	64072	broad.mit.edu	37	10	73448813	73448813	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr10:73448813G>A	uc001jrx.3	+						CDH23_uc001jry.2_Intron|CDH23_uc001jrz.2_Intron	NM_022124	NP_071407
FGFR2	2263	broad.mit.edu	37	10	123279795	123279795	+	Intron	SNP	C	T	T	rs2071616	by1000genomes	2011-2275:2012-365-T	g.chr10:123279795C>T	uc010qtk.1	-						FGFR2_uc010qtg.1_Intron|FGFR2_uc010qth.1_Intron|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Intron|FGFR2_uc010qtl.1_Intron|FGFR2_uc010qtm.1_Intron|FGFR2_uc001lfl.3_Intron|FGFR2_uc001lfm.2_Intron|FGFR2_uc001lfn.3_Intron|FGFR2_uc010qtn.1_Intron|FGFR2_uc010qto.1_Intron|FGFR2_uc001lfo.1_Intron|FGFR2_uc010qtp.1_Intron|FGFR2_uc001lfg.3_5'Flank	NM_000141	NP_000132
ODF3	113746	broad.mit.edu	37	11	196091	196091	+	5'Flank	SNP	G	C	C			2011-2275:2012-365-T	g.chr11:196091G>C	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
SART1	9092	broad.mit.edu	37	11	65738955	65738956	+	Intron	DNP	TG	GA	GA	rs71455797		2011-2275:2012-365-T	g.chr11:65738955_65738956TG>GA	uc001ogl.2	+							NM_005146	NP_005137
NELL2	4753	broad.mit.edu	37	12	45000936	45000936	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr12:45000936G>A	uc001rog.2	-						NELL2_uc001rof.3_Intron|NELL2_uc001roh.2_Intron|NELL2_uc009zkd.2_Intron|NELL2_uc010skz.1_Intron|NELL2_uc010sla.1_Intron|NELL2_uc001roi.1_Intron|NELL2_uc010slb.1_Intron	NM_001145108	NP_001138580
TMEM120B	144404	broad.mit.edu	37	12	122185451	122185451	+	Intron	SNP	C	T	T			2011-2275:2012-365-T	g.chr12:122185451C>T	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
MYH6	4624	broad.mit.edu	37	14	23863500	23863500	+	Missense_Mutation	SNP	C	A	A			2011-2275:2012-365-T	g.chr14:23863500C>A	uc001wjv.2	-	21	2529	c.2462G>T	c.(2461-2463)CGG>CTG	p.R821L		NM_002471	NP_002462
SYNE2	23224	broad.mit.edu	37	14	64457294	64457294	+	Intron	SNP	C	A	A			2011-2275:2012-365-T	g.chr14:64457294C>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
PPP4R4	57718	broad.mit.edu	37	14	94708102	94708102	+	Intron	SNP	C	A	A			2011-2275:2012-365-T	g.chr14:94708102C>A	uc001ycs.1	+							NM_058237	NP_478144
LMF1	64788	broad.mit.edu	37	16	908252	908252	+	Intron	SNP	A	G	G			2011-2275:2012-365-T	g.chr16:908252A>G	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
RPL3L	6123	broad.mit.edu	37	16	1999860	1999860	+	Intron	SNP	T	G	G			2011-2275:2012-365-T	g.chr16:1999860T>G	uc002cnh.2	-							NM_005061	NP_005052
CBFA2T3	863	broad.mit.edu	37	16	89022128	89022128	+	Intron	SNP	C	G	G			2011-2275:2012-365-T	g.chr16:89022128C>G	uc002fmm.1	-						CBFA2T3_uc002fmn.1_Intron	NM_005187	NP_005178
ABR	29	broad.mit.edu	37	17	1022603	1022603	+	Intron	SNP	T	C	C			2011-2275:2012-365-T	g.chr17:1022603T>C	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1046317	1046317	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr17:1046317G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
NF1	4763	broad.mit.edu	37	17	29654769	29654769	+	Missense_Mutation	SNP	C	A	A			2011-2275:2012-365-T	g.chr17:29654769C>A	uc002hgg.2	+	38	5854	c.5521C>A	c.(5521-5523)CAA>AAA	p.Q1841K	NF1_uc002hgh.2_Missense_Mutation_p.Q1820K|NF1_uc002hgi.1_Missense_Mutation_p.Q853K|NF1_uc010cso.2_Missense_Mutation_p.Q29K	NM_001042492	NP_001035957
PRKCA	5578	broad.mit.edu	37	17	64795388	64795388	+	Intron	SNP	G	T	T			2011-2275:2012-365-T	g.chr17:64795388G>T	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64799949	64799949	+	Intron	SNP	C	A	A			2011-2275:2012-365-T	g.chr17:64799949C>A	uc002jfp.1	+							NM_002737	NP_002728
GALR1	2587	broad.mit.edu	37	18	74964969	74964969	+	Intron	SNP	C	T	T			2011-2275:2012-365-T	g.chr18:74964969C>T	uc002lms.3	+							NM_001480	NP_001471
OSCAR	126014	broad.mit.edu	37	19	54599647	54599647	+	Intron	SNP	C	G	G	rs113089938		2011-2275:2012-365-T	g.chr19:54599647C>G	uc002qdd.2	-						OSCAR_uc002qcy.2_Intron|OSCAR_uc002qcz.2_Intron|OSCAR_uc002qda.2_Intron|OSCAR_uc002qdb.2_Intron|OSCAR_uc010erc.2_Intron|OSCAR_uc002qdc.2_Intron	NM_206818	NP_996554
ADD2	119	broad.mit.edu	37	2	70838494	70838494	+	Intron	SNP	C	T	T			2011-2275:2012-365-T	g.chr2:70838494C>T	uc010fds.1	-							NM_001617	
RMND5A	64795	broad.mit.edu	37	2	87634181	87634181	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr2:87634181G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645932	87645932	+	Intron	SNP	C	T	T			2011-2275:2012-365-T	g.chr2:87645932C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645970	87645970	+	Intron	SNP	C	A	A			2011-2275:2012-365-T	g.chr2:87645970C>A	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179438189	179438189	+	Missense_Mutation	SNP	C	A	A			2011-2275:2012-365-T	g.chr2:179438189C>A	uc010zfg.1	-	275	65190	c.64966G>T	c.(64966-64968)GAT>TAT	p.D21656Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D15351Y|TTN_uc010zfi.1_Missense_Mutation_p.D15284Y|TTN_uc010zfj.1_Missense_Mutation_p.D15159Y	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179635307	179635307	+	Missense_Mutation	SNP	C	A	A			2011-2275:2012-365-T	g.chr2:179635307C>A	uc010zfg.1	-	35	8436	c.8212G>T	c.(8212-8214)GTC>TTC	p.V2738F	TTN_uc010zfh.1_Missense_Mutation_p.V2692F|TTN_uc010zfi.1_Missense_Mutation_p.V2692F|TTN_uc010zfj.1_Missense_Mutation_p.V2692F|TTN_uc002unb.2_Missense_Mutation_p.V2738F	NM_133378	NP_596869
TPTE	7179	broad.mit.edu	37	21	10996134	10996134	+	RNA	SNP	C	A	A			2011-2275:2012-365-T	g.chr21:10996134C>A	uc002yis.1	-	12		c.2052G>T					
BAGE2	85319	broad.mit.edu	37	21	11040713	11040713	+	Intron	SNP	C	T	T	rs6582745		2011-2275:2012-365-T	g.chr21:11040713C>T	uc002yit.1	-						TPTE_uc002yis.1_5'Flank	NM_182482	NP_872288
PCBP3	54039	broad.mit.edu	37	21	47235517	47235517	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr21:47235517G>A	uc010gqb.2	+							NM_020528	NP_065389
MICAL3	57553	broad.mit.edu	37	22	18359631	18359631	+	Intron	SNP	G	T	T			2011-2275:2012-365-T	g.chr22:18359631G>T	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
MICAL3	57553	broad.mit.edu	37	22	18360088	18360088	+	Intron	SNP	T	G	G	rs139667956		2011-2275:2012-365-T	g.chr22:18360088T>G	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
MPPED1	758	broad.mit.edu	37	22	43891995	43891995	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr22:43891995G>A	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
POLQ	10721	broad.mit.edu	37	3	121265176	121265176	+	5'Flank	SNP	G	A	A	rs3806614	by1000genomes	2011-2275:2012-365-T	g.chr3:121265176G>A	uc003eee.3	-							NM_199420	NP_955452
PPP2R2C	5522	broad.mit.edu	37	4	6513609	6513609	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr4:6513609G>A	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
PPP2R2C	5522	broad.mit.edu	37	4	6513627	6513627	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr4:6513627G>A	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
FAT1	2195	broad.mit.edu	37	4	187557145	187557145	+	Intron	SNP	C	A	A			2011-2275:2012-365-T	g.chr4:187557145C>A	uc003izf.2	-							NM_005245	NP_005236
HLA-B	3106	broad.mit.edu	37	6	31240041	31240041	+	Intron	SNP	C	T	T	rs2524094		2011-2275:2012-365-T	g.chr6:31240041C>T	uc003ntf.2	-						HLA-C_uc011dnj.1_5'Flank|HLA-C_uc003nsx.2_5'Flank|HLA-C_uc003nsy.2_5'Flank|HLA-C_uc003nsz.2_5'Flank|HLA-C_uc010jsl.2_5'Flank|HLA-C_uc003nta.2_5'Flank|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_5'Flank		
TAP1	6890	broad.mit.edu	37	6	32816958	32816958	+	Intron	SNP	G	A	A	rs4148882	by1000genomes	2011-2275:2012-365-T	g.chr6:32816958G>A	uc003ocg.2	-						TAP1_uc011dqi.1_Intron	NM_000593	NP_000584
SYNE1	23345	broad.mit.edu	37	6	152725255	152725255	+	Intron	SNP	C	T	T	rs71940719		2011-2275:2012-365-T	g.chr6:152725255C>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
PIK3CG	5294	broad.mit.edu	37	7	106510076	106510076	+	Intron	SNP	A	G	G	rs1526083	byFrequency;by1000genomes	2011-2275:2012-365-T	g.chr7:106510076A>G	uc003vdv.3	+						PIK3CG_uc003vdu.2_Intron|PIK3CG_uc003vdw.2_Intron	NM_002649	NP_002640
PTPRN2	5799	broad.mit.edu	37	7	157941188	157941188	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chr7:157941188G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
UBR5	51366	broad.mit.edu	37	8	103358590	103358590	+	Missense_Mutation	SNP	C	A	A			2011-2275:2012-365-T	g.chr8:103358590C>A	uc003ykr.1	-	7	643	c.610G>T	c.(610-612)GTC>TTC	p.V204F	UBR5_uc003yks.1_Missense_Mutation_p.V204F	NM_015902	NP_056986
HEATR7A	727957	broad.mit.edu	37	8	145288295	145288295	+	Intron	SNP	C	A	A	rs11779369		2011-2275:2012-365-T	g.chr8:145288295C>A	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
ADAMTSL1	92949	broad.mit.edu	37	9	18753341	18753341	+	Silent	SNP	C	A	A			2011-2275:2012-365-T	g.chr9:18753341C>A	uc003zne.3	+	16	2179	c.2052C>A	c.(2050-2052)GTC>GTA	p.V684V		NM_001040272	NP_001035362
PPP2R3B	28227	broad.mit.edu	37	X	303244	303244	+	Intron	SNP	G	A	A			2011-2275:2012-365-T	g.chrX:303244G>A	uc004cpg.2	-						PPP2R3B_uc004cpf.2_5'Flank	NM_013239	NP_037371
PRDM16	63976	broad.mit.edu	37	1	3296151	3296151	+	Intron	SNP	C	A	A			2011-2276:2012-364-T	g.chr1:3296151C>A	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3296172	3296172	+	Intron	SNP	G	A	A	rs149875568	by1000genomes	2011-2276:2012-364-T	g.chr1:3296172G>A	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
IRF6	3664	broad.mit.edu	37	1	209968904	209968904	+	Intron	SNP	G	A	A			2011-2276:2012-364-T	g.chr1:209968904G>A	uc001hhq.1	-						IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Intron	NM_006147	NP_006138
ADARB2	105	broad.mit.edu	37	10	1502263	1502263	+	Intron	SNP	G	A	A			2011-2276:2012-364-T	g.chr10:1502263G>A	uc009xhq.2	-							NM_018702	NP_061172
AP2A2	161	broad.mit.edu	37	11	994797	994797	+	Intron	SNP	G	C	C			2011-2276:2012-364-T	g.chr11:994797G>C	uc001lss.2	+						AP2A2_uc001lst.1_Intron|AP2A2_uc009yco.1_Intron	NM_012305	NP_036437
SNTG2	54221	broad.mit.edu	37	2	1285151	1285151	+	Intron	SNP	G	A	A			2011-2276:2012-364-T	g.chr2:1285151G>A	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
RMND5A	64795	broad.mit.edu	37	2	87644221	87644221	+	Intron	SNP	A	T	T			2011-2276:2012-364-T	g.chr2:87644221A>T	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179415741	179415741	+	Missense_Mutation	SNP	C	A	A			2011-2276:2012-364-T	g.chr2:179415741C>A	uc010zfg.1	-	285	84037	c.83813G>T	c.(83812-83814)AGC>ATC	p.S27938I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S21633I|TTN_uc010zfi.1_Missense_Mutation_p.S21566I|TTN_uc010zfj.1_Missense_Mutation_p.S21441I	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179424144	179424144	+	Missense_Mutation	SNP	T	A	A			2011-2276:2012-364-T	g.chr2:179424144T>A	uc010zfg.1	-	275	79235	c.79011A>T	c.(79009-79011)AAA>AAT	p.K26337N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K20032N|TTN_uc010zfi.1_Missense_Mutation_p.K19965N|TTN_uc010zfj.1_Missense_Mutation_p.K19840N	NM_133378	NP_596869
C21orf56	84221	broad.mit.edu	37	21	47590621	47590621	+	Intron	SNP	G	A	A			2011-2276:2012-364-T	g.chr21:47590621G>A	uc011afu.1	-						C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
PIK3CA	5290	broad.mit.edu	37	3	178916726	178916726	+	Missense_Mutation	SNP	G	A	A			2011-2276:2012-364-T	g.chr3:178916726G>A	uc003fjk.2	+	2	270	c.113G>A	c.(112-114)CGT>CAT	p.R38H		NM_006218	NP_006209
TP63	8626	broad.mit.edu	37	3	189590824	189590824	+	Intron	SNP	G	C	C	rs9840359	byFrequency;by1000genomes	2011-2276:2012-364-T	g.chr3:189590824G>C	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_3'UTR|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron	NM_003722	NP_003713
SLC10A7	84068	broad.mit.edu	37	4	147207574	147207574	+	Intron	SNP	G	A	A			2011-2276:2012-364-T	g.chr4:147207574G>A	uc010ioz.2	-						SLC10A7_uc003ikr.2_Intron|SLC10A7_uc010ipa.2_Intron|SLC10A7_uc003iks.2_Intron	NM_001029998	NP_001025169
TERT	7015	broad.mit.edu	37	5	1276197	1276197	+	Intron	SNP	C	A	A			2011-2276:2012-364-T	g.chr5:1276197C>A	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
ADAMTS12	81792	broad.mit.edu	37	5	33751613	33751613	+	Missense_Mutation	SNP	T	G	G			2011-2276:2012-364-T	g.chr5:33751613T>G	uc003jia.1	-	3	693	c.530A>C	c.(529-531)GAA>GCA	p.E177A	ADAMTS12_uc010iuq.1_Missense_Mutation_p.E177A|ADAMTS12_uc003jib.1_Missense_Mutation_p.E177A	NM_030955	NP_112217
HLA-G	3135	broad.mit.edu	37	6	29858004	29858004	+	Intron	SNP	T	C	C			2011-2276:2012-364-T	g.chr6:29858004T>C	uc011dmb.1	+						HLA-H_uc003nod.2_Intron	NM_002127	NP_002118
RPS6KA2	6196	broad.mit.edu	37	6	166863410	166863410	+	Intron	SNP	C	G	G	rs111344944	by1000genomes	2011-2276:2012-364-T	g.chr6:166863410C>G	uc003qvb.1	-						RPS6KA2_uc011ego.1_Intron|RPS6KA2_uc010kkl.1_Intron|RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
INPP5A	3632	broad.mit.edu	37	10	134484950	134484950	+	Intron	SNP	G	C	C	rs139851380	by1000genomes	2011-2277:2012-372-T	g.chr10:134484950G>C	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
SART1	9092	broad.mit.edu	37	11	65738937	65738937	+	Intron	SNP	G	A	A			2011-2277:2012-372-T	g.chr11:65738937G>A	uc001ogl.2	+							NM_005146	NP_005137
ASCL4	121549	broad.mit.edu	37	12	108168706	108168706	+	5'UTR	SNP	G	A	A	rs61938581	by1000genomes	2011-2277:2012-372-T	g.chr12:108168706G>A	uc001tmr.2	+	1						NM_203436	NP_982260
FLT3	2322	broad.mit.edu	37	13	28624263	28624263	+	Silent	SNP	C	A	A			2011-2277:2012-372-T	g.chr13:28624263C>A	uc001urw.2	-	6	793	c.711G>T	c.(709-711)CTG>CTT	p.L237L	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.L237L	NM_004119	NP_004110
F7	2155	broad.mit.edu	37	13	113761762	113761762	+	Intron	SNP	A	T	T			2011-2277:2012-372-T	g.chr13:113761762A>T	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
GRK1	6011	broad.mit.edu	37	13	114430970	114430970	+	Intron	SNP	T	G	G			2011-2277:2012-372-T	g.chr13:114430970T>G	uc010tkf.1	+							NM_002929	NP_002920
GRK1	6011	broad.mit.edu	37	13	114431021	114431021	+	Intron	SNP	C	T	T			2011-2277:2012-372-T	g.chr13:114431021C>T	uc010tkf.1	+							NM_002929	NP_002920
SYNE2	23224	broad.mit.edu	37	14	64340321	64340321	+	Intron	SNP	A	G	G	rs8015354	by1000genomes	2011-2277:2012-372-T	g.chr14:64340321A>G	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64428154	64428154	+	Intron	SNP	A	G	G	rs1255884	by1000genomes	2011-2277:2012-372-T	g.chr14:64428154A>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
FOXN3	1112	broad.mit.edu	37	14	89828275	89828275	+	Intron	SNP	G	C	C			2011-2277:2012-372-T	g.chr14:89828275G>C	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
ZNF276	92822	broad.mit.edu	37	16	89805261	89805261	+	3'UTR	SNP	A	G	G	rs1800359	byFrequency;by1000genomes	2011-2277:2012-372-T	g.chr16:89805261A>G	uc002fos.3	+	11					ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|FANCA_uc002fou.1_Intron|FANCA_uc010vpn.1_Intron	NM_001113525	NP_001106997
FANCA	2175	broad.mit.edu	37	16	89806343	89806343	+	Intron	SNP	C	A	A	rs11647746	byFrequency;by1000genomes	2011-2277:2012-372-T	g.chr16:89806343C>A	uc002fou.1	-						ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fos.3_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_Missense_Mutation_p.L417F	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89806347	89806347	+	Intron	SNP	A	T	T	rs7195906	byFrequency;by1000genomes	2011-2277:2012-372-T	g.chr16:89806347A>T	uc002fou.1	-						ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fos.3_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_Missense_Mutation_p.I416N	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89849583	89849583	+	Intron	SNP	C	T	T	rs2239360	by1000genomes	2011-2277:2012-372-T	g.chr16:89849583C>T	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89849629	89849629	+	Intron	SNP	T	A	A	rs12448860	byFrequency;by1000genomes	2011-2277:2012-372-T	g.chr16:89849629T>A	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89857964	89857964	+	Intron	SNP	T	C	C	rs1800330	byFrequency;by1000genomes	2011-2277:2012-372-T	g.chr16:89857964T>C	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89858525	89858525	+	Intron	SNP	C	G	G	rs1800287	byFrequency;by1000genomes	2011-2277:2012-372-T	g.chr16:89858525C>G	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
RPH3AL	9501	broad.mit.edu	37	17	164418	164418	+	Intron	SNP	T	A	A			2011-2277:2012-372-T	g.chr17:164418T>A	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
BRCA1	672	broad.mit.edu	37	17	41219560	41219560	+	Intron	SNP	C	T	T	rs8176235	by1000genomes	2011-2277:2012-372-T	g.chr17:41219560C>T	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
BRCA1	672	broad.mit.edu	37	17	41277187	41277187	+	Intron	SNP	G	C	C	rs799905	by1000genomes	2011-2277:2012-372-T	g.chr17:41277187G>C	uc002icq.2	-						BRCA1_uc010whp.1_Intron|NBR2_uc002idf.2_5'Flank|NBR2_uc010czb.1_5'Flank|NBR2_uc002idg.2_5'Flank|NBR2_uc002idh.2_5'Flank|BRCA1_uc010whl.1_5'Flank|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_5'Flank|BRCA1_uc010cyy.1_Intron|BRCA1_uc010whs.1_Intron|BRCA1_uc010cyz.2_Intron|BRCA1_uc010cza.2_Intron|BRCA1_uc010wht.1_Intron	NM_007294	NP_009225
MED16	10025	broad.mit.edu	37	19	879255	879255	+	Intron	SNP	G	A	A	rs111756427	by1000genomes	2011-2277:2012-372-T	g.chr19:879255G>A	uc002lqd.1	-						MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Intron|MED16_uc002lqf.2_Intron|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Intron|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472
ZNF83	55769	broad.mit.edu	37	19	53116804	53116804	+	Missense_Mutation	SNP	G	C	C			2011-2277:2012-372-T	g.chr19:53116804G>C	uc002pzu.3	-	2	2258	c.1014C>G	c.(1012-1014)ATC>ATG	p.I338M	ZNF83_uc002pzv.3_Missense_Mutation_p.I338M|ZNF83_uc010eps.2_Missense_Mutation_p.I310M|ZNF83_uc010ept.2_Missense_Mutation_p.I338M|ZNF83_uc010epu.2_Missense_Mutation_p.I338M|ZNF83_uc010epv.2_Missense_Mutation_p.I338M|ZNF83_uc010epw.2_Missense_Mutation_p.I338M|ZNF83_uc010epx.2_Missense_Mutation_p.I310M|ZNF83_uc010epy.2_Missense_Mutation_p.I338M|ZNF83_uc010epz.2_Missense_Mutation_p.I310M	NM_018300	NP_060770
LRP1B	53353	broad.mit.edu	37	2	141253408	141253408	+	Intron	SNP	T	C	C	rs11683334	by1000genomes	2011-2277:2012-372-T	g.chr2:141253408T>C	uc002tvj.1	-							NM_018557	NP_061027
PAK7	57144	broad.mit.edu	37	20	9543688	9543688	+	Intron	SNP	T	G	G	rs2297347	by1000genomes	2011-2277:2012-372-T	g.chr20:9543688T>G	uc002wnl.2	-						PAK7_uc002wnk.2_Intron|PAK7_uc002wnj.2_Intron|PAK7_uc010gby.1_Intron	NM_020341	NP_065074
MX2	4600	broad.mit.edu	37	21	42770884	42770884	+	Missense_Mutation	SNP	C	A	A			2011-2277:2012-372-T	g.chr21:42770884C>A	uc002yzf.1	+	9	1314	c.1210C>A	c.(1210-1212)CTG>ATG	p.L404M	MX2_uc011aer.1_RNA|MX2_uc002yzg.1_Missense_Mutation_p.L127M|MX2_uc010gop.1_Translation_Start_Site	NM_002463	NP_002454
CHL1	10752	broad.mit.edu	37	3	304032	304032	+	Intron	SNP	C	T	T			2011-2277:2012-372-T	g.chr3:304032C>T	uc003bou.2	+						CHL1_uc003bot.2_Intron|CHL1_uc003bow.1_Intron	NM_006614	NP_006605
TP63	8626	broad.mit.edu	37	3	189456729	189456729	+	Intron	SNP	C	G	G	rs4686525	by1000genomes	2011-2277:2012-372-T	g.chr3:189456729C>G	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195491180	195491180	+	Intron	SNP	C	T	T	rs55693102		2011-2277:2012-372-T	g.chr3:195491180C>T	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FAT2	2196	broad.mit.edu	37	5	150889805	150889805	+	Intron	SNP	A	T	T	rs6870300	by1000genomes	2011-2277:2012-372-T	g.chr5:150889805A>T	uc003lue.3	-						GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Intron	NM_001447	NP_001438
FAT2	2196	broad.mit.edu	37	5	150942774	150942774	+	Intron	SNP	A	G	G	rs10069901	by1000genomes	2011-2277:2012-372-T	g.chr5:150942774A>G	uc003lue.3	-						GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Intron	NM_001447	NP_001438
TAP2	6891	broad.mit.edu	37	6	32797361	32797361	+	Intron	SNP	C	T	T	rs241440	by1000genomes	2011-2277:2012-372-T	g.chr6:32797361C>T	uc003occ.2	-						TAP2_uc011dqf.1_Intron|TAP2_uc003ocb.1_Intron|TAP2_uc003ocd.2_Intron	NM_018833	NP_061313
TAP2	6891	broad.mit.edu	37	6	32797684	32797684	+	Intron	SNP	A	G	G	rs241437	by1000genomes	2011-2277:2012-372-T	g.chr6:32797684A>G	uc003occ.2	-						TAP2_uc011dqf.1_Intron|TAP2_uc003ocb.1_Intron|TAP2_uc003ocd.2_Intron	NM_018833	NP_061313
TAP1	6890	broad.mit.edu	37	6	32818678	32818678	+	Intron	SNP	G	A	A	rs2071538	by1000genomes	2011-2277:2012-372-T	g.chr6:32818678G>A	uc003ocg.2	-						TAP1_uc011dqi.1_Intron	NM_000593	NP_000584
EPHB4	2050	broad.mit.edu	37	7	100411311	100411311	+	Silent	SNP	T	C	C			2011-2277:2012-372-T	g.chr7:100411311T>C	uc003uwn.1	-	10	2210	c.1719A>G	c.(1717-1719)GAA>GAG	p.E573E	EPHB4_uc003uwm.1_Silent_p.E480E|EPHB4_uc010lhj.1_Silent_p.E573E	NM_004444	NP_004435
MLL3	58508	broad.mit.edu	37	7	151864139	151864139	+	Intron	SNP	A	C	C			2011-2277:2012-372-T	g.chr7:151864139A>C	uc003wla.2	-						MLL3_uc003wkz.2_Intron|MLL3_uc003wky.2_Intron	NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	157980930	157980930	+	Intron	SNP	G	A	A			2011-2277:2012-372-T	g.chr7:157980930G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PKHD1L1	93035	broad.mit.edu	37	8	110511010	110511010	+	Intron	SNP	C	A	A			2011-2277:2012-372-T	g.chr8:110511010C>A	uc003yne.2	+							NM_177531	NP_803875
NOTCH1	4851	broad.mit.edu	37	9	139397707	139397707	+	Silent	SNP	G	A	A	rs10521	by1000genomes	2011-2277:2012-372-T	g.chr9:139397707G>A	uc004chz.2	-	27	5094	c.5094C>T	c.(5092-5094)GAC>GAT	p.D1698D	NOTCH1_uc004cia.1_Silent_p.D928D	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139400904	139400904	+	Intron	SNP	C	T	T	rs4880098	by1000genomes	2011-2277:2012-372-T	g.chr9:139400904C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
PNPLA7	375775	broad.mit.edu	37	9	140411803	140411803	+	Intron	SNP	A	G	G			2011-2277:2012-372-T	g.chr9:140411803A>G	uc004cnf.2	-						PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Intron	NM_152286	NP_689499
HSFX2	100130086	broad.mit.edu	37	X	148687158	148687158	+	Intron	SNP	T	A	A			2011-2277:2012-372-T	g.chrX:148687158T>A	uc004fdl.2	-						HSFX1_uc004fdm.2_Intron|TMEM185A_uc011mxp.1_Intron|TMEM185A_uc004fdo.2_Intron|TMEM185A_uc011mxq.1_Intron|TMEM185A_uc004fdp.3_Intron	NM_016153	NP_057237
PRDM16	63976	broad.mit.edu	37	1	3082136	3082136	+	Intron	SNP	G	C	C			2011-2278:2012-1320-T	g.chr1:3082136G>C	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
CHD5	26038	broad.mit.edu	37	1	6196943	6196943	+	Intron	SNP	A	G	G	rs2746066	by1000genomes	2011-2278:2012-1320-T	g.chr1:6196943A>G	uc001amb.1	-						CHD5_uc001ama.1_Intron|CHD5_uc001amc.1_Intron|CHD5_uc009vlx.1_5'Flank	NM_015557	NP_056372
CHD5	26038	broad.mit.edu	37	1	6196951	6196951	+	Intron	SNP	T	A	A	rs2785582	by1000genomes	2011-2278:2012-1320-T	g.chr1:6196951T>A	uc001amb.1	-						CHD5_uc001ama.1_Intron|CHD5_uc001amc.1_Intron|CHD5_uc009vlx.1_5'Flank	NM_015557	NP_056372
KAZ	23254	broad.mit.edu	37	1	15375046	15375046	+	Intron	SNP	T	C	C	rs72639851	by1000genomes	2011-2278:2012-1320-T	g.chr1:15375046T>C	uc001avm.3	+						KAZ_uc009vog.1_Intron|KAZ_uc010obj.1_Intron|KAZ_uc001avo.2_Intron|KAZ_uc001avp.2_Intron|KAZ_uc001avq.2_Intron|KAZ_uc001avr.2_Intron	NM_201628	NP_963922
EPHA2	1969	broad.mit.edu	37	1	16460212	16460212	+	Intron	SNP	G	A	A			2011-2278:2012-1320-T	g.chr1:16460212G>A	uc001aya.1	-							NM_004431	NP_004422
MPL	4352	broad.mit.edu	37	1	43803222	43803222	+	5'Flank	SNP	G	A	A	rs710252	by1000genomes	2011-2278:2012-1320-T	g.chr1:43803222G>A	uc001ciw.2	+						MPL_uc001civ.2_5'Flank|MPL_uc009vwr.2_5'Flank	NM_005373	NP_005364
LDLRAD1	388633	broad.mit.edu	37	1	54483694	54483694	+	Intron	SNP	C	T	T	rs34764952	by1000genomes	2011-2278:2012-1320-T	g.chr1:54483694C>T	uc001cwm.1	-						LDLRAD1_uc010onz.1_Intron|LDLRAD1_uc010ooa.1_Intron|LDLRAD1_uc009vzn.1_Intron	NM_001010978	NP_001010978
PDE4DIP	9659	broad.mit.edu	37	1	144922171	144922171	+	Intron	SNP	C	T	T	rs1343470		2011-2278:2012-1320-T	g.chr1:144922171C>T	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_Intron|PDE4DIP_uc001emd.1_Intron|PDE4DIP_uc001emb.1_Intron|PDE4DIP_uc001eme.1_5'Flank|PDE4DIP_uc001emf.1_Intron	NM_014644	NP_055459
GATA3	2625	broad.mit.edu	37	10	8097368	8097368	+	5'UTR	SNP	G	A	A	rs10905277	byFrequency;by1000genomes	2011-2278:2012-1320-T	g.chr10:8097368G>A	uc001ika.2	+	2					FLJ45983_uc010qbe.1_5'Flank|FLJ45983_uc001ijx.1_5'Flank|FLJ45983_uc010qbf.1_5'Flank|FLJ45983_uc010qbg.1_5'Flank|FLJ45983_uc001ijy.1_5'Flank|GATA3_uc001ijz.2_5'UTR	NM_002051	NP_002042
TSPAN9	10867	broad.mit.edu	37	12	3307045	3307045	+	Intron	SNP	T	C	C	rs146495500	by1000genomes	2011-2278:2012-1320-T	g.chr12:3307045T>C	uc001qlp.2	+							NM_006675	NP_006666
GALNT9	50614	broad.mit.edu	37	12	132868091	132868091	+	Intron	SNP	T	C	C	rs148751841	by1000genomes	2011-2278:2012-1320-T	g.chr12:132868091T>C	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
SYNE2	23224	broad.mit.edu	37	14	64560142	64560142	+	Missense_Mutation	SNP	C	G	G			2011-2278:2012-1320-T	g.chr14:64560142C>G	uc001xgm.2	+	61	12282	c.12052C>G	c.(12052-12054)CAG>GAG	p.Q4018E	SYNE2_uc001xgl.2_Missense_Mutation_p.Q4018E|SYNE2_uc010apy.2_Missense_Mutation_p.Q403E|SYNE2_uc010apx.1_Missense_Mutation_p.Q410E	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64675895	64675895	+	Intron	SNP	C	T	T	rs1152593	by1000genomes	2011-2278:2012-1320-T	g.chr14:64675895C>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_5'Flank	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64676098	64676098	+	Intron	SNP	A	G	G	rs1152592	by1000genomes	2011-2278:2012-1320-T	g.chr14:64676098A>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_5'UTR	NM_015180	NP_055995
ABAT	18	broad.mit.edu	37	16	8807100	8807100	+	Intron	SNP	G	T	T	rs1060784	by1000genomes	2011-2278:2012-1320-T	g.chr16:8807100G>T	uc002czc.3	+						ABAT_uc002czd.3_5'UTR|ABAT_uc010buh.2_5'UTR	NM_020686	NP_065737
CYLD	1540	broad.mit.edu	37	16	50828333	50828333	+	Missense_Mutation	SNP	C	G	G			2011-2278:2012-1320-T	g.chr16:50828333C>G	uc002egp.1	+	18	3095	c.2680C>G	c.(2680-2682)CGG>GGG	p.R894G	CYLD_uc010cbs.1_Missense_Mutation_p.R891G|CYLD_uc002egq.1_Missense_Mutation_p.R891G|CYLD_uc002egr.1_Missense_Mutation_p.R891G	NM_015247	NP_056062
USP6	9098	broad.mit.edu	37	17	5031436	5031436	+	Intron	SNP	C	A	A	rs3853647	by1000genomes	2011-2278:2012-1320-T	g.chr17:5031436C>A	uc002gau.1	+						USP6_uc002gav.1_5'Flank|USP6_uc010ckz.1_5'Flank|USP6_uc002gaw.2_5'Flank	NM_004505	NP_004496
USP6	9098	broad.mit.edu	37	17	5031946	5031946	+	Intron	SNP	G	A	A	rs2071456	by1000genomes	2011-2278:2012-1320-T	g.chr17:5031946G>A	uc002gau.1	+						USP6_uc002gav.1_5'UTR|USP6_uc010ckz.1_5'UTR|USP6_uc002gaw.2_5'Flank	NM_004505	NP_004496
MYH13	8735	broad.mit.edu	37	17	10235360	10235360	+	Intron	SNP	G	C	C	rs8064714	by1000genomes	2011-2278:2012-1320-T	g.chr17:10235360G>C	uc002gmk.1	-							NM_003802	NP_003793
SETBP1	26040	broad.mit.edu	37	18	42260994	42260994	+	Intron	SNP	T	C	C			2011-2278:2012-1320-T	g.chr18:42260994T>C	uc010dni.2	+						SETBP1_uc002lay.2_Intron	NM_015559	NP_056374
CYP2F1	1572	broad.mit.edu	37	19	41724820	41724820	+	Intron	SNP	G	A	A	rs2301236	by1000genomes	2011-2278:2012-1320-T	g.chr19:41724820G>A	uc010xvw.1	+						AXL_uc010ehi.1_5'Flank|AXL_uc010ehj.2_5'Flank|AXL_uc010ehk.2_5'Flank		
CASP8	841	broad.mit.edu	37	2	202150089	202150089	+	Intron	SNP	C	T	T	rs34750049		2011-2278:2012-1320-T	g.chr2:202150089C>T	uc002uxr.1	+						CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc002uxw.1_Intron|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Intron	NM_033355	NP_203519
TAF4	6874	broad.mit.edu	37	20	60553687	60553687	+	Intron	SNP	A	G	G	rs79482470	by1000genomes	2011-2278:2012-1320-T	g.chr20:60553687A>G	uc002ybs.2	-							NM_003185	NP_003176
TAF4	6874	broad.mit.edu	37	20	60554803	60554803	+	Intron	SNP	T	G	G	rs62207106	by1000genomes	2011-2278:2012-1320-T	g.chr20:60554803T>G	uc002ybs.2	-							NM_003185	NP_003176
POLQ	10721	broad.mit.edu	37	3	121241058	121241058	+	Intron	SNP	C	G	G	rs13059229	by1000genomes	2011-2278:2012-1320-T	g.chr3:121241058C>G	uc003eee.3	-							NM_199420	NP_955452
HLA-F	3134	broad.mit.edu	37	6	29692729	29692729	+	Intron	SNP	T	G	G	rs2072898	by1000genomes	2011-2278:2012-1320-T	g.chr6:29692729T>G	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-G	3135	broad.mit.edu	37	6	29798083	29798083	+	Intron	SNP	C	T	T	rs114038308	by1000genomes	2011-2278:2012-1320-T	g.chr6:29798083C>T	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29798642	29798642	+	3'UTR	SNP	C	T	T	rs115100128	byFrequency;by1000genomes	2011-2278:2012-1320-T	g.chr6:29798642C>T	uc003nnw.2	+	8					HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_3'UTR|HLA-G_uc003nnz.3_3'UTR|HLA-G_uc010jrn.2_3'UTR|HLA-G_uc003nny.3_RNA|HLA-G_uc003ran.1_RNA	NM_002127	NP_002118
HLA-A	3105	broad.mit.edu	37	6	29911356	29911356	+	Intron	SNP	G	A	A	rs112336208	by1000genomes	2011-2278:2012-1320-T	g.chr6:29911356G>A	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Intron|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_Intron	NM_002116	NP_002107
HLA-B	3106	broad.mit.edu	37	6	31322395	31322395	+	Intron	SNP	A	G	G	rs17199328	byFrequency;by1000genomes	2011-2278:2012-1320-T	g.chr6:31322395A>G	uc003nth.2	-						HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Intron|HLA-B_uc003nti.1_Intron	NM_005514	NP_005505
SYNE1	23345	broad.mit.edu	37	6	152683183	152683183	+	Intron	SNP	G	T	T	rs7771657	by1000genomes	2011-2278:2012-1320-T	g.chr6:152683183G>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152683199	152683199	+	Intron	SNP	G	A	A	rs7771662	by1000genomes	2011-2278:2012-1320-T	g.chr6:152683199G>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152685861	152685861	+	Intron	SNP	A	G	G	rs9478327	by1000genomes	2011-2278:2012-1320-T	g.chr6:152685861A>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
PDE1C	5137	broad.mit.edu	37	7	32307188	32307188	+	Intron	SNP	A	T	T			2011-2278:2012-1320-T	g.chr7:32307188A>T	uc003tco.1	-							NM_005020	NP_005011
EPHA1	2041	broad.mit.edu	37	7	143092437	143092437	+	Silent	SNP	C	T	T			2011-2278:2012-1320-T	g.chr7:143092437C>T	uc003wcz.2	-	12	2145	c.2058G>A	c.(2056-2058)CTG>CTA	p.L686L		NM_005232	NP_005223
PKHD1L1	93035	broad.mit.edu	37	8	110477074	110477074	+	Silent	SNP	T	C	C			2011-2278:2012-1320-T	g.chr8:110477074T>C	uc003yne.2	+	49	8117	c.8013T>C	c.(8011-8013)CAT>CAC	p.H2671H		NM_177531	NP_803875
NUP214	8021	broad.mit.edu	37	9	134010236	134010236	+	Intron	SNP	T	C	C	rs16922	by1000genomes	2011-2278:2012-1320-T	g.chr9:134010236T>C	uc004cag.2	+						NUP214_uc004cah.2_Intron|NUP214_uc004caf.1_Intron	NM_005085	NP_005076
NOTCH1	4851	broad.mit.edu	37	9	139400406	139400406	+	Intron	SNP	C	T	T	rs11145764	by1000genomes	2011-2278:2012-1320-T	g.chr9:139400406C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139400904	139400904	+	Intron	SNP	C	T	T	rs4880098	by1000genomes	2011-2278:2012-1320-T	g.chr9:139400904C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
HEPH	9843	broad.mit.edu	37	X	65486241	65486241	+	Intron	SNP	T	G	G			2011-2278:2012-1320-T	g.chrX:65486241T>G	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
MTOR	2475	broad.mit.edu	37	1	11210163	11210163	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr1:11210163G>A	uc001asd.2	-							NM_004958	NP_004949
MTOR	2475	broad.mit.edu	37	1	11317011	11317011	+	Missense_Mutation	SNP	A	C	C			2011-2280:2012-366-T	g.chr1:11317011A>C	uc001asd.2	-	4	604	c.483T>G	c.(481-483)AAT>AAG	p.N161K		NM_004958	NP_004949
FBXO42	54455	broad.mit.edu	37	1	16583317	16583317	+	Intron	SNP	T	C	C			2011-2280:2012-366-T	g.chr1:16583317T>C	uc001ayg.2	-						FBXO42_uc001ayf.2_Intron	NM_018994	NP_061867
MCOLN2	255231	broad.mit.edu	37	1	85403502	85403502	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr1:85403502G>A	uc001dkm.2	-	11	1512	c.1271C>T	c.(1270-1272)GCT>GTT	p.A424V	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991
RBM15	64783	broad.mit.edu	37	1	110888875	110888875	+	Intron	SNP	T	A	A			2011-2280:2012-366-T	g.chr1:110888875T>A	uc001dzl.1	+						RBM15_uc001dzm.1_Intron|uc001dzn.1_5'Flank	NM_022768	NP_073605
LOC200030	200030	broad.mit.edu	37	1	148343758	148343758	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr1:148343758C>T	uc001eqf.2	-	3	364	c.329G>A	c.(328-330)AGG>AAG	p.R110K	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_RNA|uc001erd.3_Missense_Mutation_p.R110K|uc001erc.3_RNA|uc010paj.1_Intron|uc010pau.1_5'Flank|uc010pav.1_Missense_Mutation_p.R110K|uc010paw.1_Missense_Mutation_p.R35K	NM_017940	NP_060410
LOC200030	200030	broad.mit.edu	37	1	148343766	148343766	+	Silent	SNP	G	C	C			2011-2280:2012-366-T	g.chr1:148343766G>C	uc001eqf.2	-	3	356	c.321C>G	c.(319-321)ACC>ACG	p.T107T	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_RNA|uc001erd.3_Silent_p.T107T|uc001erc.3_RNA|uc010paj.1_Intron|uc010pau.1_5'Flank|uc010pav.1_Silent_p.T107T|uc010paw.1_Silent_p.T32T	NM_017940	NP_060410
FLG	2312	broad.mit.edu	37	1	152286488	152286488	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr1:152286488G>A	uc001ezu.1	-	3	910	c.874C>T	c.(874-876)CGT>TGT	p.R292C	uc001ezv.2_RNA	NM_002016	NP_002007
C1orf125	126859	broad.mit.edu	37	1	179335807	179335807	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr1:179335807A>G	uc001gmo.2	+						C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmn.1_Intron|C1orf125_uc010pnl.1_Intron|C1orf125_uc001gmp.2_Intron	NM_144696	NP_653297
USH2A	7399	broad.mit.edu	37	1	215914780	215914780	+	Missense_Mutation	SNP	A	G	G			2011-2280:2012-366-T	g.chr1:215914780A>G	uc001hku.1	-	60	12035	c.11648T>C	c.(11647-11649)ATA>ACA	p.I3883T		NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216019173	216019173	+	Silent	SNP	G	A	A			2011-2280:2012-366-T	g.chr1:216019173G>A	uc001hku.1	-	45	9435	c.9048C>T	c.(9046-9048)TGC>TGT	p.C3016C		NM_206933	NP_996816
SMYD3	64754	broad.mit.edu	37	1	246140038	246140038	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr1:246140038C>T	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
ADARB2	105	broad.mit.edu	37	10	1613829	1613829	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr10:1613829G>A	uc009xhq.2	-							NM_018702	NP_061172
CUBN	8029	broad.mit.edu	37	10	16918813	16918813	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr10:16918813C>T	uc001ioo.2	-						CUBN_uc009xjq.1_Intron|CUBN_uc009xjr.1_Intron	NM_001081	NP_001072
RET	5979	broad.mit.edu	37	10	43608350	43608350	+	Silent	SNP	C	T	T			2011-2280:2012-366-T	g.chr10:43608350C>T	uc001jal.2	+	9	1888	c.1698C>T	c.(1696-1698)CCC>CCT	p.P566P	RET_uc001jak.1_Silent_p.P566P|RET_uc010qez.1_Silent_p.P312P	NM_020975	NP_066124
DUSP5	1847	broad.mit.edu	37	10	112266870	112266870	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr10:112266870G>A	uc001kzd.2	+	3	961	c.706G>A	c.(706-708)GCT>ACT	p.A236T		NM_004419	NP_004410
INPP5A	3632	broad.mit.edu	37	10	134537223	134537223	+	Intron	SNP	G	C	C			2011-2280:2012-366-T	g.chr10:134537223G>C	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
TOLLIP	54472	broad.mit.edu	37	11	1317863	1317863	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr11:1317863C>T	uc001lte.2	-						TOLLIP_uc001ltd.2_Intron|TOLLIP_uc009ycu.2_Intron|TOLLIP_uc001ltf.2_Intron	NM_019009	NP_061882
KRAS	3845	broad.mit.edu	37	12	25368285	25368285	+	Intron	SNP	T	G	G			2011-2280:2012-366-T	g.chr12:25368285T>G	uc001rgp.1	-						KRAS_uc001rgq.1_Intron	NM_033360	NP_203524
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		2011-2280:2012-366-T	g.chr12:25398284C>T	uc001rgp.1	-	2	216	c.35G>A	c.(34-36)GGT>GAT	p.G12D	KRAS_uc001rgq.1_Missense_Mutation_p.G12D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524
ABCD2	225	broad.mit.edu	37	12	39967532	39967532	+	Missense_Mutation	SNP	G	C	C			2011-2280:2012-366-T	g.chr12:39967532G>C	uc001rmb.2	-	9	2415	c.1989C>G	c.(1987-1989)CAC>CAG	p.H663Q		NM_005164	NP_005155
MLL2	8085	broad.mit.edu	37	12	49415846	49415846	+	Nonsense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr12:49415846G>A	uc001rta.3	-	53	16501	c.16501C>T	c.(16501-16503)CGA>TGA	p.R5501*		NM_003482	NP_003473
NAV3	89795	broad.mit.edu	37	12	78224947	78224947	+	5'Flank	SNP	G	C	C			2011-2280:2012-366-T	g.chr12:78224947G>C	uc001syp.2	+						NAV3_uc001syo.2_5'Flank	NM_014903	NP_055718
ANO4	121601	broad.mit.edu	37	12	101295493	101295493	+	5'UTR	SNP	G	A	A			2011-2280:2012-366-T	g.chr12:101295493G>A	uc010svm.1	+	2					ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_5'UTR|ANO4_uc001thx.2_5'UTR	NM_178826	NP_849148
ASCL4	121549	broad.mit.edu	37	12	108168290	108168290	+	5'UTR	SNP	C	T	T			2011-2280:2012-366-T	g.chr12:108168290C>T	uc001tmr.2	+	1						NM_203436	NP_982260
ACACB	32	broad.mit.edu	37	12	109690884	109690884	+	Missense_Mutation	SNP	A	G	G			2011-2280:2012-366-T	g.chr12:109690884A>G	uc001tob.2	+	43	6085	c.5966A>G	c.(5965-5967)AAT>AGT	p.N1989S	ACACB_uc001toc.2_Missense_Mutation_p.N1989S|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.N655S	NM_001093	NP_001084
MYO1H	283446	broad.mit.edu	37	12	109880975	109880975	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr12:109880975A>G	uc010sxo.1	+						MYO1H_uc010sxn.1_Intron		
TMEM132D	121256	broad.mit.edu	37	12	129558548	129558548	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr12:129558548C>T	uc009zyl.1	-	9	3500	c.3172G>A	c.(3172-3174)GAG>AAG	p.E1058K	TMEM132D_uc001uia.2_Missense_Mutation_p.E596K	NM_133448	NP_597705
RIMBP2	23504	broad.mit.edu	37	12	130890799	130890799	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr12:130890799G>A	uc001uil.2	-							NM_015347	NP_056162
RIMBP2	23504	broad.mit.edu	37	12	131111095	131111095	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr12:131111095A>G	uc001uim.2	-								
BRCA2	675	broad.mit.edu	37	13	32937476	32937476	+	Missense_Mutation	SNP	A	G	G			2011-2280:2012-366-T	g.chr13:32937476A>G	uc001uub.1	+	18	8364	c.8137A>G	c.(8137-8139)ACC>GCC	p.T2713A		NM_000059	NP_000050
RB1	5925	broad.mit.edu	37	13	49050706	49050706	+	Intron	SNP	T	C	C			2011-2280:2012-366-T	g.chr13:49050706T>C	uc001vcb.2	+							NM_000321	NP_000312
PCDH17	27253	broad.mit.edu	37	13	58205647	58205647	+	5'Flank	SNP	G	T	T			2011-2280:2012-366-T	g.chr13:58205647G>T	uc001vhq.1	+						PCDH17_uc010aec.1_5'Flank	NM_001040429	NP_001035519
PCDH17	27253	broad.mit.edu	37	13	58208013	58208013	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr13:58208013C>T	uc001vhq.1	+	1	2225	c.1333C>T	c.(1333-1335)CGG>TGG	p.R445W	PCDH17_uc010aec.1_Missense_Mutation_p.R445W	NM_001040429	NP_001035519
GPC5	2262	broad.mit.edu	37	13	92346115	92346115	+	Nonsense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr13:92346115G>T	uc010tif.1	+	3	1366	c.1000G>T	c.(1000-1002)GGA>TGA	p.G334*		NM_004466	NP_004457
TPP2	7174	broad.mit.edu	37	13	103266487	103266487	+	Missense_Mutation	SNP	C	A	A			2011-2280:2012-366-T	g.chr13:103266487C>A	uc001vpi.3	+	3	434	c.331C>A	c.(331-333)CAT>AAT	p.H111N		NM_003291	NP_003282
MCF2L	23263	broad.mit.edu	37	13	113717822	113717822	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr13:113717822C>T	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron|MCF2L_uc001vst.1_Intron	NM_001112732	NP_001106203
FAM179B	23116	broad.mit.edu	37	14	45432459	45432459	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr14:45432459G>A	uc001wvv.2	+	1	1044	c.835G>A	c.(835-837)GCA>ACA	p.A279T	FAM179B_uc001wvw.2_Missense_Mutation_p.A279T|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvq.2_5'Flank|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Missense_Mutation_p.A279T|FAM179B_uc001wvu.2_Missense_Mutation_p.A279T	NM_015091	NP_055906
SYNE2	23224	broad.mit.edu	37	14	64519608	64519608	+	Missense_Mutation	SNP	T	C	C			2011-2280:2012-366-T	g.chr14:64519608T>C	uc001xgm.2	+	48	9207	c.8977T>C	c.(8977-8979)TGT>CGT	p.C2993R	SYNE2_uc001xgl.2_Missense_Mutation_p.C2993R	NM_015180	NP_055995
NRXN3	9369	broad.mit.edu	37	14	79746605	79746605	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr14:79746605G>A	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_5'UTR|NRXN3_uc010asw.2_5'UTR|NRXN3_uc001xur.3_5'UTR	NM_004796	NP_004787
INO80	54617	broad.mit.edu	37	15	41377610	41377610	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr15:41377610C>T	uc001zni.2	-	7	1043	c.830G>A	c.(829-831)CGC>CAC	p.R277H	INO80_uc010ucu.1_RNA	NM_017553	NP_060023
B2M	567	broad.mit.edu	37	15	45003618	45003618	+	5'Flank	SNP	G	A	A			2011-2280:2012-366-T	g.chr15:45003618G>A	uc001zuc.2	+						B2M_uc010uek.1_5'Flank|B2M_uc010bdx.1_5'Flank	NM_004048	NP_004039
TLN2	83660	broad.mit.edu	37	15	63125614	63125614	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr15:63125614G>A	uc002alb.3	+						TLN2_uc002alc.3_Intron|TLN2_uc010uic.1_Intron|uc002ale.1_RNA	NM_015059	NP_055874
AGBL1	123624	broad.mit.edu	37	15	87360771	87360771	+	Intron	SNP	C	G	G			2011-2280:2012-366-T	g.chr15:87360771C>G	uc002blz.1	+							NM_152336	NP_689549
BLM	641	broad.mit.edu	37	15	91347646	91347646	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr15:91347646C>T	uc002bpr.2	+						BLM_uc010uqh.1_Intron|BLM_uc010uqi.1_Intron|BLM_uc010bnx.2_Intron|BLM_uc002bpt.2_Intron	NM_000057	NP_000048
MSLNL	401827	broad.mit.edu	37	16	830485	830485	+	Silent	SNP	C	T	T			2011-2280:2012-366-T	g.chr16:830485C>T	uc002cjz.1	-	3	516	c.516G>A	c.(514-516)ACG>ACA	p.T172T		NM_001025190	NP_001020361
TSC2	7249	broad.mit.edu	37	16	2105377	2105377	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr16:2105377G>A	uc002con.2	+						TSC2_uc010bsd.2_Intron|TSC2_uc002coo.2_Intron|TSC2_uc010uvv.1_Intron|TSC2_uc010uvw.1_Intron|TSC2_uc002cop.2_Intron	NM_000548	NP_000539
CREBBP	1387	broad.mit.edu	37	16	3786188	3786188	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr16:3786188G>A	uc002cvv.2	-	28	4781	c.4577C>T	c.(4576-4578)GCA>GTA	p.A1526V	CREBBP_uc002cvw.2_Missense_Mutation_p.A1488V	NM_004380	NP_004371
DNAH3	55567	broad.mit.edu	37	16	21133312	21133312	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr16:21133312C>T	uc010vbe.1	-	10	1538	c.1538G>A	c.(1537-1539)CGT>CAT	p.R513H	DNAH3_uc002die.2_Missense_Mutation_p.R484H	NM_017539	NP_060009
CYLD	1540	broad.mit.edu	37	16	50827633	50827633	+	Intron	SNP	T	A	A			2011-2280:2012-366-T	g.chr16:50827633T>A	uc002egp.1	+						CYLD_uc010cbs.1_Intron|CYLD_uc002egq.1_Intron|CYLD_uc002egr.1_Intron	NM_015247	NP_056062
KLHDC4	54758	broad.mit.edu	37	16	87772847	87772847	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr16:87772847C>T	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
TP53	7157	broad.mit.edu	37	17	7576985	7576985	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr17:7576985G>A	uc002gim.2	-						TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Intron|TP53_uc010cng.1_Intron|TP53_uc002gii.1_Intron|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gij.2_Intron	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7580731	7580731	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr17:7580731G>A	uc002gim.2	-						TP53_uc002gig.1_5'Flank|TP53_uc002gih.2_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gij.2_Intron|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Intron|TP53_uc010cnk.1_5'UTR	NM_001126112	NP_001119584
MYH8	4626	broad.mit.edu	37	17	10293792	10293792	+	Silent	SNP	G	A	A			2011-2280:2012-366-T	g.chr17:10293792G>A	uc002gmm.2	-	40	5888	c.5793C>T	c.(5791-5793)CAC>CAT	p.H1931H	uc002gml.1_Intron	NM_002472	NP_002463
MYH8	4626	broad.mit.edu	37	17	10312617	10312617	+	Missense_Mutation	SNP	T	C	C			2011-2280:2012-366-T	g.chr17:10312617T>C	uc002gmm.2	-	16	1971	c.1876A>G	c.(1876-1878)ACG>GCG	p.T626A	uc002gml.1_Intron	NM_002472	NP_002463
MYH1	4619	broad.mit.edu	37	17	10419621	10419621	+	Missense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr17:10419621G>T	uc002gmo.2	-	4	337	c.243C>A	c.(241-243)AAC>AAA	p.N81K	uc002gml.1_Intron	NM_005963	NP_005954
NF1	4763	broad.mit.edu	37	17	29533276	29533276	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr17:29533276C>T	uc002hgg.2	+	12	1612	c.1279C>T	c.(1279-1281)CCT>TCT	p.P427S	NF1_uc002hge.1_Missense_Mutation_p.P427S|NF1_uc002hgf.1_Missense_Mutation_p.P427S|NF1_uc002hgh.2_Missense_Mutation_p.P427S|NF1_uc010csn.1_Missense_Mutation_p.P287S	NM_001042492	NP_001035957
STAT3	6774	broad.mit.edu	37	17	40483600	40483600	+	Intron	SNP	A	C	C			2011-2280:2012-366-T	g.chr17:40483600A>C	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
PRKCA	5578	broad.mit.edu	37	17	64770154	64770154	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr17:64770154G>A	uc002jfp.1	+	14	1618	c.1574G>A	c.(1573-1575)GGC>GAC	p.G525D	PRKCA_uc002jfo.1_Missense_Mutation_p.G396D	NM_002737	NP_002728
RPTOR	57521	broad.mit.edu	37	17	78717636	78717636	+	Intron	SNP	C	G	G	rs139992677	by1000genomes	2011-2280:2012-366-T	g.chr17:78717636C>G	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
LAMA1	284217	broad.mit.edu	37	18	6992725	6992725	+	Intron	SNP	G	C	C			2011-2280:2012-366-T	g.chr18:6992725G>C	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
ZNF521	25925	broad.mit.edu	37	18	22805035	22805035	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr18:22805035C>T	uc002kvk.2	-	4	3094	c.2847G>A	c.(2845-2847)ATG>ATA	p.M949I	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.M949I|ZNF521_uc002kvl.2_Missense_Mutation_p.M729I	NM_015461	NP_056276
ZNF521	25925	broad.mit.edu	37	18	22807044	22807044	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr18:22807044C>T	uc002kvk.2	-	4	1085	c.838G>A	c.(838-840)GCC>ACC	p.A280T	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.A280T|ZNF521_uc002kvl.2_Missense_Mutation_p.A60T	NM_015461	NP_056276
PIK3C3	5289	broad.mit.edu	37	18	39534983	39534983	+	5'Flank	SNP	G	A	A			2011-2280:2012-366-T	g.chr18:39534983G>A	uc002lap.2	+						PIK3C3_uc010xcl.1_5'Flank|PIK3C3_uc002lao.2_5'Flank	NM_002647	NP_002638
KIAA1468	57614	broad.mit.edu	37	18	59925737	59925737	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr18:59925737A>G	uc002lil.2	+						KIAA1468_uc002lik.1_Intron|KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
PHLPP1	23239	broad.mit.edu	37	18	60446891	60446891	+	Intron	SNP	A	C	C			2011-2280:2012-366-T	g.chr18:60446891A>C	uc002lis.2	+							NM_194449	NP_919431
ZNF426	79088	broad.mit.edu	37	19	9639816	9639816	+	Missense_Mutation	SNP	T	G	G			2011-2280:2012-366-T	g.chr19:9639816T>G	uc002mlq.2	-	8	1169	c.905A>C	c.(904-906)CAC>CCC	p.H302P	ZNF426_uc010dws.2_Missense_Mutation_p.H264P	NM_024106	NP_077011
ZNF461	92283	broad.mit.edu	37	19	37130270	37130270	+	Missense_Mutation	SNP	T	C	C			2011-2280:2012-366-T	g.chr19:37130270T>C	uc002oem.2	-	6	1205	c.977A>G	c.(976-978)GAA>GGA	p.E326G	ZNF461_uc002oen.2_Missense_Mutation_p.E295G|ZNF461_uc010xtj.1_Missense_Mutation_p.E303G	NM_153257	NP_694989
SPTBN4	57731	broad.mit.edu	37	19	41062993	41062993	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr19:41062993C>T	uc002ony.2	+	26	5440	c.5354C>T	c.(5353-5355)GCA>GTA	p.A1785V	SPTBN4_uc002onx.2_Missense_Mutation_p.A1785V|SPTBN4_uc002onz.2_Missense_Mutation_p.A1785V|SPTBN4_uc010egx.2_Missense_Mutation_p.A528V|SPTBN4_uc002ooa.2_Missense_Mutation_p.A461V	NM_020971	NP_066022
TPRX1	284355	broad.mit.edu	37	19	48305390	48305390	+	Missense_Mutation	SNP	A	T	T			2011-2280:2012-366-T	g.chr19:48305390A>T	uc002php.1	-	2	949	c.878T>A	c.(877-879)ATG>AAG	p.M293K		NM_198479	NP_940881
ZNF610	162963	broad.mit.edu	37	19	52869183	52869183	+	Silent	SNP	T	C	C			2011-2280:2012-366-T	g.chr19:52869183T>C	uc002pyx.3	+	6	958	c.552T>C	c.(550-552)ATT>ATC	p.I184I	ZNF610_uc002pyy.3_Silent_p.I184I|ZNF610_uc002pyz.3_Silent_p.I141I|ZNF610_uc002pza.2_Silent_p.I184I	NM_001161426	NP_001154898
ZNF665	79788	broad.mit.edu	37	19	53668667	53668667	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr19:53668667G>A	uc010eqm.1	-	4	1176	c.1076C>T	c.(1075-1077)TCA>TTA	p.S359L		NM_024733	NP_079009
NLRP12	91662	broad.mit.edu	37	19	54311065	54311065	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr19:54311065C>T	uc002qch.3	-						NLRP12_uc010eqw.2_5'UTR|NLRP12_uc002qci.3_Intron|NLRP12_uc002qcj.3_Intron|NLRP12_uc002qck.3_Intron|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288
LILRA5	353514	broad.mit.edu	37	19	54818784	54818784	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr19:54818784C>T	uc002qfe.2	-	7	934	c.814G>A	c.(814-816)GCC>ACC	p.A272T	LILRA5_uc002qff.2_Missense_Mutation_p.A260T	NM_021250	NP_067073
PEG3	5178	broad.mit.edu	37	19	57327928	57327928	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr19:57327928C>T	uc002qnu.2	-	7	2233	c.1882G>A	c.(1882-1884)GAA>AAA	p.E628K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E599K|PEG3_uc002qnv.2_Missense_Mutation_p.E628K|PEG3_uc002qnw.2_Missense_Mutation_p.E504K|PEG3_uc002qnx.2_Missense_Mutation_p.E502K|PEG3_uc010etr.2_Missense_Mutation_p.E628K	NM_001146186	NP_001139658
REL	5966	broad.mit.edu	37	2	61143994	61143994	+	Intron	SNP	T	A	A			2011-2280:2012-366-T	g.chr2:61143994T>A	uc002sam.1	+						REL_uc002san.1_Intron	NM_002908	NP_002899
RMND5A	64795	broad.mit.edu	37	2	87017420	87017420	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr2:87017420G>A	uc002srs.3	+						CD8A_uc002srv.2_Intron|CD8A_uc010ytn.1_Intron|CD8A_uc002srt.2_Intron|CD8A_uc002sru.2_Intron		
INPP4A	3631	broad.mit.edu	37	2	99154426	99154426	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr2:99154426G>A	uc002syy.2	+	8	961	c.568G>A	c.(568-570)GTC>ATC	p.V190I	INPP4A_uc010yvj.1_Missense_Mutation_p.V190I|INPP4A_uc010yvk.1_Missense_Mutation_p.V190I|INPP4A_uc002syx.2_Missense_Mutation_p.V190I|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696
LRP1B	53353	broad.mit.edu	37	2	141598727	141598727	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr2:141598727A>G	uc002tvj.1	-							NM_018557	NP_061027
PKP4	8502	broad.mit.edu	37	2	159530522	159530522	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr2:159530522A>G	uc002tzv.2	+						PKP4_uc002tzw.2_Intron|PKP4_uc002tzx.2_Intron|PKP4_uc002uaa.2_Intron|uc002uab.1_Intron|PKP4_uc002uac.2_Intron|PKP4_uc002uad.2_Intron|PKP4_uc002uae.1_Intron	NM_003628	NP_003619
TTN	7273	broad.mit.edu	37	2	179473282	179473282	+	Intron	SNP	T	C	C			2011-2280:2012-366-T	g.chr2:179473282T>C	uc010zfg.1	-						uc002ump.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
CASP8	841	broad.mit.edu	37	2	202122983	202122983	+	Intron	SNP	T	C	C			2011-2280:2012-366-T	g.chr2:202122983T>C	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxs.1_5'UTR|CASP8_uc002uxt.1_Missense_Mutation_p.V10A|CASP8_uc002uxu.1_RNA|CASP8_uc010ftd.1_Intron|CASP8_uc002uxv.1_Intron|CASP8_uc002uxw.1_5'Flank	NM_033355	NP_203519
INPP5D	3635	broad.mit.edu	37	2	234072440	234072440	+	Missense_Mutation	SNP	C	A	A			2011-2280:2012-366-T	g.chr2:234072440C>A	uc010zmo.1	+	11	1481	c.1328C>A	c.(1327-1329)CCC>CAC	p.P443H	INPP5D_uc010zmp.1_Missense_Mutation_p.P442H	NM_001017915	NP_001017915
INPP5D	3635	broad.mit.edu	37	2	234073070	234073070	+	Missense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr2:234073070G>T	uc010zmo.1	+	12	1708	c.1555G>T	c.(1555-1557)GGG>TGG	p.G519W	INPP5D_uc010zmp.1_Missense_Mutation_p.G518W	NM_001017915	NP_001017915
COL6A3	1293	broad.mit.edu	37	2	238234210	238234210	+	Silent	SNP	G	A	A			2011-2280:2012-366-T	g.chr2:238234210G>A	uc002vwl.2	-	43	9771	c.9486C>T	c.(9484-9486)TGC>TGT	p.C3162C	COL6A3_uc002vwo.2_Silent_p.C2956C|COL6A3_uc010znj.1_Silent_p.C2555C|COL6A3_uc002vwj.2_Silent_p.C543C	NM_004369	NP_004360
COL6A3	1293	broad.mit.edu	37	2	238267692	238267692	+	Missense_Mutation	SNP	T	C	C			2011-2280:2012-366-T	g.chr2:238267692T>C	uc002vwl.2	-	20	6679	c.6394A>G	c.(6394-6396)AAT>GAT	p.N2132D	COL6A3_uc002vwo.2_Missense_Mutation_p.N1926D|COL6A3_uc010znj.1_Missense_Mutation_p.N1525D	NM_004369	NP_004360
ESPNL	339768	broad.mit.edu	37	2	239027843	239027843	+	Intron	SNP	A	C	C			2011-2280:2012-366-T	g.chr2:239027843A>C	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
PAK7	57144	broad.mit.edu	37	20	9546883	9546883	+	Missense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr20:9546883G>T	uc002wnl.2	-	6	1684	c.1139C>A	c.(1138-1140)GCC>GAC	p.A380D	PAK7_uc002wnk.2_Missense_Mutation_p.A380D|PAK7_uc002wnj.2_Missense_Mutation_p.A380D|PAK7_uc010gby.1_Missense_Mutation_p.A380D	NM_020341	NP_065074
ASXL1	171023	broad.mit.edu	37	20	31024332	31024332	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr20:31024332C>T	uc002wxs.2	+	12	4243	c.3817C>T	c.(3817-3819)CGT>TGT	p.R1273C	ASXL1_uc010geb.2_Missense_Mutation_p.R1164C	NM_015338	NP_056153
BAGE2	85319	broad.mit.edu	37	21	11040737	11040737	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr21:11040737G>A	uc002yit.1	-						TPTE_uc002yis.1_5'Flank	NM_182482	NP_872288
RUNX1	861	broad.mit.edu	37	21	36171640	36171640	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr21:36171640C>T	uc002yuh.2	-	5	2422	c.844G>A	c.(844-846)GGC>AGC	p.G282S	RUNX1_uc002yui.2_Missense_Mutation_p.G218S|RUNX1_uc010gmu.2_Missense_Mutation_p.G309S|RUNX1_uc010gmv.2_Missense_Mutation_p.G309S|RUNX1_uc002yuj.3_Missense_Mutation_p.G177S|RUNX1_uc002yuk.3_Missense_Mutation_p.G309S|RUNX1_uc002yul.1_Missense_Mutation_p.G74S|RUNX1_uc002yum.1_Missense_Mutation_p.G113S	NM_001001890	NP_001001890
MYH9	4627	broad.mit.edu	37	22	36696985	36696985	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr22:36696985C>T	uc003apg.2	-	22	2981	c.2750G>A	c.(2749-2751)TGC>TAC	p.C917Y	MYH9_uc003aph.1_Missense_Mutation_p.C781Y	NM_002473	NP_002464
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45197080	45197080	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr22:45197080A>G	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45197112	45197112	+	Intron	SNP	A	G	G	rs138603125	by1000genomes	2011-2280:2012-366-T	g.chr22:45197112A>G	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
SHANK3	85358	broad.mit.edu	37	22	51124365	51124365	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr22:51124365G>A	uc003bne.1	+							NM_001080420	NP_001073889
CNTN6	27255	broad.mit.edu	37	3	1427439	1427439	+	Missense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr3:1427439G>T	uc003boz.2	+	20	2929	c.2662G>T	c.(2662-2664)GGG>TGG	p.G888W	CNTN6_uc011asj.1_Missense_Mutation_p.G816W|CNTN6_uc003bpa.2_Missense_Mutation_p.G888W	NM_014461	NP_055276
BBX	56987	broad.mit.edu	37	3	107491568	107491568	+	Nonsense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr3:107491568G>T	uc010hpr.2	+	11	1327	c.1000G>T	c.(1000-1002)GGA>TGA	p.G334*	BBX_uc003dwk.3_Nonsense_Mutation_p.G334*|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Nonsense_Mutation_p.G355*|BBX_uc003dwm.3_Nonsense_Mutation_p.G334*|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040
BBX	56987	broad.mit.edu	37	3	107524267	107524267	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr3:107524267C>T	uc010hpr.2	+	18	3116	c.2789C>T	c.(2788-2790)CCG>CTG	p.P930L	BBX_uc003dwk.3_Missense_Mutation_p.P900L|BBX_uc003dwl.3_Missense_Mutation_p.R594C|BBX_uc003dwm.3_Missense_Mutation_p.P900L|BBX_uc003dwo.3_Missense_Mutation_p.R247C	NM_001142568	NP_001136040
DPPA4	55211	broad.mit.edu	37	3	109056425	109056425	+	5'Flank	SNP	C	T	T			2011-2280:2012-366-T	g.chr3:109056425C>T	uc003dxq.3	-						DPPA4_uc011bho.1_5'Flank|DPPA4_uc011bhp.1_5'Flank	NM_018189	NP_060659
POLQ	10721	broad.mit.edu	37	3	121187276	121187276	+	Nonsense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr3:121187276G>A	uc003eee.3	-	23	6850	c.6721C>T	c.(6721-6723)CGA>TGA	p.R2241*	POLQ_uc003eed.2_Nonsense_Mutation_p.R1413*	NM_199420	NP_955452
CHCHD6	84303	broad.mit.edu	37	3	126582409	126582409	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr3:126582409A>G	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
CLSTN2	64084	broad.mit.edu	37	3	140281828	140281828	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr3:140281828C>T	uc003etn.2	+							NM_022131	NP_071414
SI	6476	broad.mit.edu	37	3	164755752	164755752	+	Nonsense_Mutation	SNP	C	A	A			2011-2280:2012-366-T	g.chr3:164755752C>A	uc003fei.2	-	21	2424	c.2362G>T	c.(2362-2364)GGA>TGA	p.G788*		NM_001041	NP_001032
MECOM	2122	broad.mit.edu	37	3	168861480	168861480	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr3:168861480A>G	uc003ffi.3	-						MECOM_uc003ffj.3_Intron|MECOM_uc011bpi.1_Intron|MECOM_uc003ffn.3_Intron|MECOM_uc003ffk.2_Intron|MECOM_uc003ffl.2_Intron|MECOM_uc011bpj.1_Intron|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Intron|MECOM_uc003ffm.1_Intron	NM_005241	NP_005232
BCL6	604	broad.mit.edu	37	3	187449591	187449591	+	Silent	SNP	A	G	G			2011-2280:2012-366-T	g.chr3:187449591A>G	uc003frp.3	-	4	746	c.289T>C	c.(289-291)TTG>CTG	p.L97L	BCL6_uc011bsf.1_Silent_p.L97L|BCL6_uc010hza.2_5'UTR|BCL6_uc003frq.1_Silent_p.L97L	NM_001130845	NP_001124317
TFRC	7037	broad.mit.edu	37	3	195794497	195794497	+	Missense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr3:195794497G>T	uc003fvz.3	-	9	1215	c.932C>A	c.(931-933)CCT>CAT	p.P311H	TFRC_uc003fwa.3_Missense_Mutation_p.P311H|TFRC_uc010hzy.2_Missense_Mutation_p.P230H|TFRC_uc011btr.1_Missense_Mutation_p.P29H	NM_003234	NP_003225
TET2	54790	broad.mit.edu	37	4	106159410	106159410	+	Intron	SNP	T	C	C			2011-2280:2012-366-T	g.chr4:106159410T>C	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron|TET2_uc010ilp.1_Intron|TET2_uc003hxi.1_3'UTR	NM_001127208	NP_001120680
PHF17	79960	broad.mit.edu	37	4	129736405	129736405	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr4:129736405G>A	uc003igk.2	+						PHF17_uc003igj.2_Intron|PHF17_uc003igl.2_Intron|PHF17_uc011cgy.1_Intron|PHF17_uc003igm.2_Intron	NM_199320	NP_955352
FBXW7	55294	broad.mit.edu	37	4	153303802	153303802	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr4:153303802G>A	uc003ims.2	-						FBXW7_uc011cii.1_Intron|FBXW7_uc003imt.2_Intron|FBXW7_uc003imr.2_5'Flank	NM_033632	NP_361014
FAT1	2195	broad.mit.edu	37	4	187532699	187532699	+	Missense_Mutation	SNP	A	G	G			2011-2280:2012-366-T	g.chr4:187532699A>G	uc003izf.2	-	14	9882	c.9694T>C	c.(9694-9696)TAC>CAC	p.Y3232H		NM_005245	NP_005236
NKD2	85409	broad.mit.edu	37	5	1036910	1036910	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr5:1036910G>A	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
CDH12	1010	broad.mit.edu	37	5	21751760	21751760	+	3'UTR	SNP	T	A	A			2011-2280:2012-366-T	g.chr5:21751760T>A	uc010iuc.2	-	12					CDH12_uc011cno.1_3'UTR|CDH12_uc003jgk.2_3'UTR|uc003jgj.2_Intron	NM_004061	NP_004052
ADAMTS12	81792	broad.mit.edu	37	5	33577281	33577281	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr5:33577281A>G	uc003jia.1	-						ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217
ADAMTS12	81792	broad.mit.edu	37	5	33658289	33658289	+	Missense_Mutation	SNP	C	A	A			2011-2280:2012-366-T	g.chr5:33658289C>A	uc003jia.1	-	7	1353	c.1190G>T	c.(1189-1191)AGC>ATC	p.S397I	ADAMTS12_uc010iuq.1_Missense_Mutation_p.S397I	NM_030955	NP_112217
RXFP3	51289	broad.mit.edu	37	5	33936873	33936873	+	Missense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr5:33936873G>T	uc003jic.1	+	1	385	c.28G>T	c.(28-30)GCC>TCC	p.A10S		NM_016568	NP_057652
MSH3	4437	broad.mit.edu	37	5	80057336	80057336	+	Intron	SNP	T	C	C			2011-2280:2012-366-T	g.chr5:80057336T>C	uc003kgz.2	+							NM_002439	NP_002430
RASA1	5921	broad.mit.edu	37	5	86564112	86564112	+	5'Flank	SNP	G	T	T			2011-2280:2012-366-T	g.chr5:86564112G>T	uc003kiw.2	+						RASA1_uc010jav.2_5'Flank|RASA1_uc003kix.2_5'Flank|RASA1_uc011ctv.1_5'Flank|RASA1_uc011ctw.1_5'Flank|RASA1_uc010jaw.2_5'Flank|RASA1_uc011ctu.1_5'Flank	NM_002890	NP_002881
RASA1	5921	broad.mit.edu	37	5	86648979	86648979	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr5:86648979G>A	uc003kiw.2	+	9	1377	c.1259G>A	c.(1258-1260)GGG>GAG	p.G420E	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_Missense_Mutation_p.G243E|RASA1_uc011ctv.1_Missense_Mutation_p.G253E|RASA1_uc011ctw.1_Missense_Mutation_p.G254E|RASA1_uc010jaw.2_Missense_Mutation_p.G242E	NM_002890	NP_002881
SLCO4C1	353189	broad.mit.edu	37	5	101592916	101592916	+	Silent	SNP	G	A	A			2011-2280:2012-366-T	g.chr5:101592916G>A	uc003knm.2	-	8	1659	c.1372C>T	c.(1372-1374)CTG>TTG	p.L458L		NM_180991	NP_851322
PCDHA2	56146	broad.mit.edu	37	5	140174678	140174678	+	Silent	SNP	C	A	A			2011-2280:2012-366-T	g.chr5:140174678C>A	uc003lhd.2	+	1	235	c.129C>A	c.(127-129)ACC>ACA	p.T43T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.T43T|PCDHA2_uc011czy.1_Silent_p.T43T	NM_018905	NP_061728
PCDHB11	56125	broad.mit.edu	37	5	140579717	140579717	+	Missense_Mutation	SNP	A	G	G			2011-2280:2012-366-T	g.chr5:140579717A>G	uc003liy.2	+	1	370	c.370A>G	c.(370-372)AGG>GGG	p.R124G	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754
FAT2	2196	broad.mit.edu	37	5	150913882	150913882	+	Intron	SNP	G	T	T			2011-2280:2012-366-T	g.chr5:150913882G>T	uc003lue.3	-						GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_5'Flank	NM_001447	NP_001438
EBF1	1879	broad.mit.edu	37	5	158527186	158527186	+	5'Flank	SNP	A	T	T			2011-2280:2012-366-T	g.chr5:158527186A>T	uc010jip.2	-						EBF1_uc011ddx.1_5'Flank|EBF1_uc003lxl.3_5'Flank|uc003lxm.1_5'Flank	NM_024007	NP_076870
NSD1	64324	broad.mit.edu	37	5	176662948	176662948	+	Splice_Site	SNP	T	C	C			2011-2280:2012-366-T	g.chr5:176662948T>C	uc003mfr.3	+	6	4059	c.3921_splice	c.e6+2	p.K1307_splice	NSD1_uc003mft.3_Splice_Site_p.K1038_splice|NSD1_uc003mfs.1_Splice_Site_p.K1204_splice|NSD1_uc011dfx.1_Splice_Site_p.K955_splice	NM_022455	NP_071900
COL23A1	91522	broad.mit.edu	37	5	177721265	177721265	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr5:177721265G>A	uc003mje.2	-							NM_173465	NP_775736
E2F3	1871	broad.mit.edu	37	6	20401810	20401810	+	5'Flank	SNP	G	T	T			2011-2280:2012-366-T	g.chr6:20401810G>T	uc003nda.2	+						E2F3_uc003ncz.2_5'Flank	NM_001949	NP_001940
HLA-E	3133	broad.mit.edu	37	6	30457901	30457901	+	Intron	SNP	G	T	T			2011-2280:2012-366-T	g.chr6:30457901G>T	uc003nqg.2	+						HLA-E_uc011dmg.1_Intron|HLA-E_uc011dmh.1_Intron	NM_005516	NP_005507
HLA-C	3107	broad.mit.edu	37	6	31237066	31237066	+	Intron	SNP	C	A	A			2011-2280:2012-366-T	g.chr6:31237066C>A	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron	NM_002117	NP_002108
HLA-C	3107	broad.mit.edu	37	6	31239681	31239681	+	Intron	SNP	A	T	T	rs111542254		2011-2280:2012-366-T	g.chr6:31239681A>T	uc003nsy.2	-						HLA-C_uc011dnj.1_5'UTR|HLA-C_uc003nsx.2_5'UTR|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Intron|HLA-B_uc003ntf.2_Intron	NM_002117	NP_002108
PKHD1	5314	broad.mit.edu	37	6	51771053	51771053	+	Silent	SNP	A	G	G			2011-2280:2012-366-T	g.chr6:51771053A>G	uc003pah.1	-	41	7044	c.6768T>C	c.(6766-6768)AGT>AGC	p.S2256S	PKHD1_uc010jzn.1_Intron|PKHD1_uc003pai.2_Silent_p.S2256S	NM_138694	NP_619639
PKHD1	5314	broad.mit.edu	37	6	51897792	51897792	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr6:51897792A>G	uc003pah.1	-						PKHD1_uc003pai.2_Intron	NM_138694	NP_619639
PHIP	55023	broad.mit.edu	37	6	79727137	79727137	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr6:79727137C>T	uc003pir.2	-						PHIP_uc011dyp.1_Intron	NM_017934	NP_060404
EPHA7	2045	broad.mit.edu	37	6	94129667	94129667	+	5'Flank	SNP	T	C	C			2011-2280:2012-366-T	g.chr6:94129667T>C	uc003poe.2	-						EPHA7_uc003pof.2_5'Flank|EPHA7_uc011eac.1_5'Flank|EPHA7_uc003pog.3_5'Flank	NM_004440	NP_004431
COQ3	51805	broad.mit.edu	37	6	99842420	99842420	+	5'Flank	SNP	C	T	T			2011-2280:2012-366-T	g.chr6:99842420C>T	uc003ppk.2	-							NM_017421	NP_059117
SYNE1	23345	broad.mit.edu	37	6	152542097	152542097	+	Silent	SNP	G	A	A			2011-2280:2012-366-T	g.chr6:152542097G>A	uc010kiw.2	-	119	22343	c.21741C>T	c.(21739-21741)TAC>TAT	p.Y7247Y	SYNE1_uc010kiv.2_Silent_p.Y1771Y|SYNE1_uc003qos.3_Silent_p.Y1771Y|SYNE1_uc003qot.3_Silent_p.Y7176Y|SYNE1_uc003qou.3_Silent_p.Y7247Y|SYNE1_uc003qor.3_Silent_p.Y147Y	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152694159	152694159	+	Intron	SNP	T	C	C			2011-2280:2012-366-T	g.chr6:152694159T>C	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron|SYNE1_uc003qov.2_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152725251	152725251	+	Intron	SNP	T	C	C	rs6919643		2011-2280:2012-366-T	g.chr6:152725251T>C	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152730398	152730398	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr6:152730398A>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
MAD1L1	8379	broad.mit.edu	37	7	2097634	2097634	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr7:2097634C>T	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
HNRNPA2B1	3181	broad.mit.edu	37	7	26236350	26236350	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr7:26236350A>G	uc003sxr.3	-						HNRNPA2B1_uc003sxs.3_Intron	NM_031243	NP_112533
EPHB4	2050	broad.mit.edu	37	7	100417290	100417290	+	Silent	SNP	G	A	A			2011-2280:2012-366-T	g.chr7:100417290G>A	uc003uwn.1	-	6	1677	c.1186C>T	c.(1186-1188)CTA>TTA	p.L396L	EPHB4_uc003uwm.1_Silent_p.L303L|EPHB4_uc010lhj.1_Silent_p.L396L|EPHB4_uc011kkf.1_Silent_p.L396L|EPHB4_uc011kkg.1_Intron|EPHB4_uc011kkh.1_Silent_p.L396L	NM_004444	NP_004435
SLC26A3	1811	broad.mit.edu	37	7	107427428	107427428	+	Intron	SNP	T	G	G			2011-2280:2012-366-T	g.chr7:107427428T>G	uc003ver.2	-						SLC26A3_uc003ves.2_Intron	NM_000111	NP_000102
LAMB1	3912	broad.mit.edu	37	7	107575960	107575960	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr7:107575960C>T	uc003vew.2	-	27	4423	c.4088G>A	c.(4087-4089)CGA>CAA	p.R1363Q	LAMB1_uc003vev.2_Missense_Mutation_p.R1387Q	NM_002291	NP_002282
GRM8	2918	broad.mit.edu	37	7	126409903	126409903	+	Intron	SNP	A	G	G			2011-2280:2012-366-T	g.chr7:126409903A>G	uc003vlr.2	-						GRM8_uc003vls.2_Intron|GRM8_uc011kof.1_Intron|GRM8_uc003vlt.2_Intron|GRM8_uc010lkz.1_Intron|GRM8_uc003vlu.1_Intron	NM_000845	NP_000836
GRM8	2918	broad.mit.edu	37	7	126883790	126883790	+	5'Flank	SNP	G	A	A			2011-2280:2012-366-T	g.chr7:126883790G>A	uc003vlr.2	-						GRM8_uc003vls.2_5'Flank|GRM8_uc011kof.1_5'Flank|GRM8_uc003vlt.2_Intron|GRM8_uc010lkz.1_Intron	NM_000845	NP_000836
MLL3	58508	broad.mit.edu	37	7	151859529	151859529	+	Silent	SNP	G	A	A			2011-2280:2012-366-T	g.chr7:151859529G>A	uc003wla.2	-	43	11352	c.11133C>T	c.(11131-11133)ACC>ACT	p.T3711T	MLL3_uc003wkz.2_Silent_p.T2772T|MLL3_uc003wky.2_Silent_p.T1220T	NM_170606	NP_733751
MLL3	58508	broad.mit.edu	37	7	151879966	151879966	+	Intron	SNP	C	G	G			2011-2280:2012-366-T	g.chr7:151879966C>G	uc003wla.2	-						MLL3_uc003wkz.2_Intron	NM_170606	NP_733751
MLL3	58508	broad.mit.edu	37	7	151882697	151882697	+	Silent	SNP	C	T	T			2011-2280:2012-366-T	g.chr7:151882697C>T	uc003wla.2	-	34	5247	c.5028G>A	c.(5026-5028)AAG>AAA	p.K1676K	MLL3_uc003wkz.2_Silent_p.K737K	NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	158316145	158316145	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr7:158316145C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
DLGAP2	9228	broad.mit.edu	37	8	1571628	1571628	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr8:1571628C>T	uc003wpl.2	+						DLGAP2_uc003wpm.2_Intron|uc003wpn.1_5'Flank	NM_004745	NP_004736
STC1	6781	broad.mit.edu	37	8	23712225	23712225	+	5'UTR	SNP	G	A	A			2011-2280:2012-366-T	g.chr8:23712225G>A	uc003xdw.1	-	1						NM_003155	NP_003146
RB1CC1	9821	broad.mit.edu	37	8	53596062	53596062	+	Intron	SNP	C	T	T	rs75633355		2011-2280:2012-366-T	g.chr8:53596062C>T	uc003xre.3	-						RB1CC1_uc003xrf.3_Intron	NM_014781	NP_055596
UBR5	51366	broad.mit.edu	37	8	103300530	103300530	+	Intron	SNP	T	A	A			2011-2280:2012-366-T	g.chr8:103300530T>A	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
UBR5	51366	broad.mit.edu	37	8	103306207	103306207	+	Missense_Mutation	SNP	T	C	C			2011-2280:2012-366-T	g.chr8:103306207T>C	uc003ykr.1	-	33	4358	c.4325A>G	c.(4324-4326)GAA>GGA	p.E1442G	UBR5_uc003yks.1_Missense_Mutation_p.E1442G	NM_015902	NP_056986
CSMD3	114788	broad.mit.edu	37	8	113347715	113347715	+	Intron	SNP	G	T	T	rs149924431	by1000genomes	2011-2280:2012-366-T	g.chr8:113347715G>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc003ynw.1_Intron	NM_198123	NP_937756
ENPP2	5168	broad.mit.edu	37	8	120569991	120569991	+	Intron	SNP	G	A	A			2011-2280:2012-366-T	g.chr8:120569991G>A	uc003yot.1	-						ENPP2_uc011lic.1_Intron|ENPP2_uc003yor.1_Intron|ENPP2_uc003yos.1_Intron|ENPP2_uc010mdd.1_Intron	NM_001040092	NP_001035181
TOP1MT	116447	broad.mit.edu	37	8	144404717	144404717	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr8:144404717C>T	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
RECQL4	9401	broad.mit.edu	37	8	145737578	145737578	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr8:145737578C>T	uc003zdj.2	-	19	3217	c.3185G>A	c.(3184-3186)CGG>CAG	p.R1062Q		NM_004260	NP_004251
JAK2	3717	broad.mit.edu	37	9	5065025	5065025	+	Missense_Mutation	SNP	G	A	A			2011-2280:2012-366-T	g.chr9:5065025G>A	uc010mhm.2	+	8	1312	c.1199G>A	c.(1198-1200)TGT>TAT	p.C400Y	JAK2_uc003ziw.2_Missense_Mutation_p.C400Y	NM_004972	NP_004963
ADAMTSL1	92949	broad.mit.edu	37	9	18817182	18817182	+	Missense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr9:18817182G>T	uc003zne.3	+	21	4008	c.3881G>T	c.(3880-3882)AGC>ATC	p.S1294I		NM_001040272	NP_001035362
FANCG	2189	broad.mit.edu	37	9	35076493	35076493	+	Missense_Mutation	SNP	G	T	T			2011-2280:2012-366-T	g.chr9:35076493G>T	uc003zwb.1	-	8	1504	c.1012C>A	c.(1012-1014)CTT>ATT	p.L338I	FANCG_uc003zwa.1_Missense_Mutation_p.L80I|FANCG_uc010mkj.1_Missense_Mutation_p.L80I|FANCG_uc011lot.1_Missense_Mutation_p.L338I	NM_004629	NP_004620
NUP214	8021	broad.mit.edu	37	9	134050956	134050956	+	Silent	SNP	G	A	A			2011-2280:2012-366-T	g.chr9:134050956G>A	uc004cag.2	+	23	3378	c.3267G>A	c.(3265-3267)CCG>CCA	p.P1089P	NUP214_uc004cah.2_Silent_p.P1079P|NUP214_uc004cai.2_Silent_p.P519P|NUP214_uc004caf.1_Silent_p.P1078P|NUP214_uc010mzf.2_Silent_p.P387P	NM_005085	NP_005076
TSC1	7248	broad.mit.edu	37	9	135785787	135785787	+	Intron	SNP	C	T	T			2011-2280:2012-366-T	g.chr9:135785787C>T	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron|TSC1_uc011mcs.1_Intron|TSC1_uc004ccc.1_3'UTR	NM_000368	NP_000359
COL5A1	1289	broad.mit.edu	37	9	137546338	137546338	+	Intron	SNP	A	T	T			2011-2280:2012-366-T	g.chr9:137546338A>T	uc004cfe.2	+							NM_000093	NP_000084
NOTCH1	4851	broad.mit.edu	37	9	139399477	139399477	+	Missense_Mutation	SNP	A	G	G			2011-2280:2012-366-T	g.chr9:139399477A>G	uc004chz.2	-	26	4666	c.4666T>C	c.(4666-4668)TGG>CGG	p.W1556R	NOTCH1_uc004cia.1_Missense_Mutation_p.W786R	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139405140	139405140	+	Missense_Mutation	SNP	C	T	T			2011-2280:2012-366-T	g.chr9:139405140C>T	uc004chz.2	-	17	2705	c.2705G>A	c.(2704-2706)CGC>CAC	p.R902H	NOTCH1_uc004cia.1_Missense_Mutation_p.R132H	NM_017617	NP_060087
PLCXD1	55344	broad.mit.edu	37	X	197297	197297	+	5'Flank	SNP	G	A	A			2011-2280:2012-366-T	g.chrX:197297G>A	uc004cpc.2	+						PLCXD1_uc011mgx.1_Intron	NM_018390	NP_060860
ATRX	546	broad.mit.edu	37	X	76889248	76889248	+	Intron	SNP	T	A	A			2011-2280:2012-366-T	g.chrX:76889248T>A	uc004ecp.3	-						ATRX_uc004ecq.3_Intron|ATRX_uc004eco.3_Intron	NM_000489	NP_000480
GPR174	84636	broad.mit.edu	37	X	78427487	78427487	+	Missense_Mutation	SNP	T	C	C			2011-2280:2012-366-T	g.chrX:78427487T>C	uc004edg.1	+	1	1019	c.983T>C	c.(982-984)ATG>ACG	p.M328T		NM_032553	NP_115942
ODZ1	10178	broad.mit.edu	37	X	123519772	123519772	+	Missense_Mutation	SNP	T	C	C			2011-2280:2012-366-T	g.chrX:123519772T>C	uc004euj.2	-	28	5874	c.5810A>G	c.(5809-5811)TAC>TGC	p.Y1937C	ODZ1_uc011muj.1_Missense_Mutation_p.Y1943C|ODZ1_uc010nqy.2_Missense_Mutation_p.Y1944C	NM_014253	NP_055068
ODZ1	10178	broad.mit.edu	37	X	123699290	123699290	+	Missense_Mutation	SNP	T	C	C			2011-2280:2012-366-T	g.chrX:123699290T>C	uc004euj.2	-	12	2262	c.2198A>G	c.(2197-2199)CAT>CGT	p.H733R	ODZ1_uc011muj.1_Missense_Mutation_p.H732R|ODZ1_uc010nqy.2_Missense_Mutation_p.H733R	NM_014253	NP_055068
PRKCZ	5590	broad.mit.edu	37	1	2073601	2073601	+	Intron	SNP	G	A	A			2011-2281:2012-1329-T	g.chr1:2073601G>A	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron|PRKCZ_uc009vla.2_5'Flank	NM_002744	NP_002735
PHGDH	26227	broad.mit.edu	37	1	120254552	120254552	+	5'UTR	SNP	A	C	C			2011-2281:2012-1329-T	g.chr1:120254552A>C	uc001ehz.2	+	1					PHGDH_uc009whl.2_5'UTR|PHGDH_uc009whm.2_5'UTR|PHGDH_uc001eia.2_5'UTR|PHGDH_uc009whn.2_5'UTR	NM_006623	NP_006614
NAV3	89795	broad.mit.edu	37	12	78443725	78443726	+	Intron	DNP	AG	GT	GT			2011-2281:2012-1329-T	g.chr12:78443725_78443726AG>GT	uc001syp.2	+						NAV3_uc001syo.2_Intron|NAV3_uc010sub.1_Intron	NM_014903	NP_055718
RIMBP2	23504	broad.mit.edu	37	12	131130620	131130620	+	Intron	SNP	C	T	T			2011-2281:2012-1329-T	g.chr12:131130620C>T	uc001uim.2	-								
F7	2155	broad.mit.edu	37	13	113761854	113761854	+	Intron	SNP	C	T	T			2011-2281:2012-1329-T	g.chr13:113761854C>T	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
DNAH3	55567	broad.mit.edu	37	16	20976062	20976062	+	Silent	SNP	G	T	T			2011-2281:2012-1329-T	g.chr16:20976062G>T	uc010vbe.1	-	53	9144	c.9144C>A	c.(9142-9144)CCC>CCA	p.P3048P	DNAH3_uc010vbd.1_Silent_p.P483P	NM_017539	NP_060009
HYDIN	54768	broad.mit.edu	37	16	70916803	70916803	+	Intron	SNP	G	A	A			2011-2281:2012-1329-T	g.chr16:70916803G>A	uc002ezr.2	-							NM_032821	NP_116210
ZFPM1	161882	broad.mit.edu	37	16	88559382	88559382	+	Intron	SNP	A	C	C			2011-2281:2012-1329-T	g.chr16:88559382A>C	uc002fkv.2	+							NM_153813	NP_722520
CBFA2T3	863	broad.mit.edu	37	16	89020841	89020841	+	Intron	SNP	C	T	T	rs28647204	by1000genomes	2011-2281:2012-1329-T	g.chr16:89020841C>T	uc002fmm.1	-						CBFA2T3_uc002fmn.1_Intron	NM_005187	NP_005178
ZNF276	92822	broad.mit.edu	37	16	89805261	89805261	+	3'UTR	SNP	A	G	G	rs1800359	byFrequency;by1000genomes	2011-2281:2012-1329-T	g.chr16:89805261A>G	uc002fos.3	+	11					ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|FANCA_uc002fou.1_Intron|FANCA_uc010vpn.1_Intron	NM_001113525	NP_001106997
JUP	3728	broad.mit.edu	37	17	39754737	39754737	+	Intron	SNP	T	G	G			2011-2281:2012-1329-T	g.chr17:39754737T>G	uc010wfs.1	-							NM_021991	NP_068831
ATP9B	374868	broad.mit.edu	37	18	77068861	77068861	+	Intron	SNP	G	A	A			2011-2281:2012-1329-T	g.chr18:77068861G>A	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
CTDP1	9150	broad.mit.edu	37	18	77505348	77505348	+	Intron	SNP	C	T	T			2011-2281:2012-1329-T	g.chr18:77505348C>T	uc002lnh.1	+						CTDP1_uc002lni.1_Intron|CTDP1_uc010drd.1_Intron	NM_004715	NP_004706
RMND5A	64795	broad.mit.edu	37	2	87623364	87623364	+	Intron	SNP	C	T	T			2011-2281:2012-1329-T	g.chr2:87623364C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87624066	87624066	+	Intron	SNP	A	T	T			2011-2281:2012-1329-T	g.chr2:87624066A>T	uc002srs.3	+								
PMS1	5378	broad.mit.edu	37	2	190670399	190670399	+	Missense_Mutation	SNP	G	A	A			2011-2281:2012-1329-T	g.chr2:190670399G>A	uc002urh.3	+	4	866	c.337G>A	c.(337-339)GCT>ACT	p.A113T	PMS1_uc010zga.1_Missense_Mutation_p.A113T|PMS1_uc010zgb.1_Missense_Mutation_p.A52T|PMS1_uc002urk.3_Missense_Mutation_p.A113T|PMS1_uc002uri.3_Missense_Mutation_p.A113T|PMS1_uc010zgc.1_Intron|PMS1_uc010zgd.1_Intron|PMS1_uc002urj.2_RNA|PMS1_uc010fry.1_Missense_Mutation_p.A113T|PMS1_uc010frz.2_Missense_Mutation_p.A113T|PMS1_uc010zfz.1_Missense_Mutation_p.A113T	NM_000534	NP_000525
COL6A3	1293	broad.mit.edu	37	2	238285660	238285660	+	Missense_Mutation	SNP	T	A	A			2011-2281:2012-1329-T	g.chr2:238285660T>A	uc002vwl.2	-	7	3110	c.2825A>T	c.(2824-2826)CAG>CTG	p.Q942L	COL6A3_uc002vwo.2_Missense_Mutation_p.Q736L|COL6A3_uc010znj.1_Missense_Mutation_p.Q335L|COL6A3_uc002vwq.2_Missense_Mutation_p.Q736L|COL6A3_uc002vwr.2_Missense_Mutation_p.Q535L|COL6A3_uc010znk.1_Missense_Mutation_p.Q742L	NM_004369	NP_004360
EWSR1	2130	broad.mit.edu	37	22	29669731	29669731	+	Missense_Mutation	SNP	C	T	T			2011-2281:2012-1329-T	g.chr22:29669731C>T	uc003aet.2	+	4	432	c.104C>T	c.(103-105)GCA>GTA	p.A35V	EWSR1_uc003aes.3_Missense_Mutation_p.A35V|EWSR1_uc003aev.2_Missense_Mutation_p.A35V|EWSR1_uc003aew.2_Missense_Mutation_p.A35V|EWSR1_uc003aex.2_Missense_Mutation_p.A35V	NM_005243	NP_005234
EFCAB6	64800	broad.mit.edu	37	22	43926769	43926769	+	Missense_Mutation	SNP	T	C	C			2011-2281:2012-1329-T	g.chr22:43926769T>C	uc003bdy.1	-	31	4524	c.4309A>G	c.(4309-4311)AGG>GGG	p.R1437G	EFCAB6_uc003bdz.1_Missense_Mutation_p.R1285G|EFCAB6_uc010gzi.1_Missense_Mutation_p.R1285G	NM_022785	NP_073622
SETD2	29072	broad.mit.edu	37	3	47127756	47127756	+	Silent	SNP	G	A	A			2011-2281:2012-1329-T	g.chr3:47127756G>A	uc003cqs.2	-	11	5379	c.5326C>T	c.(5326-5328)CTG>TTG	p.L1776L	SETD2_uc003cqv.2_Silent_p.L1843L|SETD2_uc003cqt.1_5'Flank	NM_014159	NP_054878
ZIC4	84107	broad.mit.edu	37	3	147121811	147121811	+	Intron	SNP	A	G	G			2011-2281:2012-1329-T	g.chr3:147121811A>G	uc003ewd.1	-						ZIC4_uc011bno.1_Silent_p.P25P	NM_032153	NP_115529
ZIC4	84107	broad.mit.edu	37	3	147121813	147121813	+	Intron	SNP	G	T	T			2011-2281:2012-1329-T	g.chr3:147121813G>T	uc003ewd.1	-						ZIC4_uc011bno.1_Missense_Mutation_p.P25T	NM_032153	NP_115529
BCL6	604	broad.mit.edu	37	3	187451566	187451567	+	Intron	DNP	GG	AA	AA			2011-2281:2012-1329-T	g.chr3:187451566_187451567GG>AA	uc003frp.3	-						BCL6_uc011bsf.1_Intron|BCL6_uc010hza.2_Intron|BCL6_uc003frq.1_Intron	NM_001130845	NP_001124317
TP63	8626	broad.mit.edu	37	3	189349247	189349247	+	5'UTR	SNP	A	T	T	rs28673064	by1000genomes	2011-2281:2012-1329-T	g.chr3:189349247A>T	uc003fry.2	+	1					TP63_uc003frx.2_5'UTR|TP63_uc003frz.2_5'UTR|TP63_uc010hzc.1_5'UTR	NM_003722	NP_003713
PCGF3	10336	broad.mit.edu	37	4	716718	716718	+	Intron	SNP	C	T	T			2011-2281:2012-1329-T	g.chr4:716718C>T	uc011bva.1	+						PCGF3_uc003gbc.1_Intron|PCGF3_uc003gbd.1_Intron|PCGF3_uc003gbe.2_Intron|PCGF3_uc010ibh.2_Intron|uc003gbf.2_Intron	NM_006315	NP_006306
FAT2	2196	broad.mit.edu	37	5	150913828	150913828	+	Intron	SNP	T	A	A			2011-2281:2012-1329-T	g.chr5:150913828T>A	uc003lue.3	-						GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_5'Flank	NM_001447	NP_001438
HLA-G	3135	broad.mit.edu	37	6	29864926	29864926	+	Intron	SNP	C	A	A			2011-2281:2012-1329-T	g.chr6:29864926C>A	uc011dmb.1	+						HCG2P7_uc003nof.2_5'Flank	NM_002127	NP_002118
SYNE1	23345	broad.mit.edu	37	6	152552353	152552353	+	Intron	SNP	G	C	C			2011-2281:2012-1329-T	g.chr6:152552353G>C	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152553262	152553262	+	Nonsense_Mutation	SNP	G	A	A			2011-2281:2012-1329-T	g.chr6:152553262G>A	uc010kiw.2	-	113	21453	c.20851C>T	c.(20851-20853)CAG>TAG	p.Q6951*	SYNE1_uc010kiv.2_Nonsense_Mutation_p.Q1475*|SYNE1_uc003qos.3_Nonsense_Mutation_p.Q1475*|SYNE1_uc003qot.3_Nonsense_Mutation_p.Q6880*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Q6951*	NM_182961	NP_892006
KIF25	3834	broad.mit.edu	37	6	168444882	168444882	+	Intron	SNP	T	C	C			2011-2281:2012-1329-T	g.chr6:168444882T>C	uc003qwk.1	+						KIF25_uc003qwl.1_Intron	NM_030615	NP_085118
EGFR	1956	broad.mit.edu	37	7	55235215	55235215	+	Intron	SNP	G	A	A	rs112001870	by1000genomes	2011-2281:2012-1329-T	g.chr7:55235215G>A	uc003tqk.2	+						EGFR_uc003tqi.2_Intron|EGFR_uc003tqj.2_Intron|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Intron|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
PCLO	27445	broad.mit.edu	37	7	82583326	82583326	+	Nonsense_Mutation	SNP	C	A	A			2011-2281:2012-1329-T	g.chr7:82583326C>A	uc003uhx.2	-	5	7232	c.6943G>T	c.(6943-6945)GAA>TAA	p.E2315*	PCLO_uc003uhv.2_Nonsense_Mutation_p.E2315*|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015
PTPRN2	5799	broad.mit.edu	37	7	157640579	157640579	+	Intron	SNP	C	T	T			2011-2281:2012-1329-T	g.chr7:157640579C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157980930	157980930	+	Intron	SNP	G	A	A			2011-2281:2012-1329-T	g.chr7:157980930G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158153253	158153253	+	Intron	SNP	C	T	T			2011-2281:2012-1329-T	g.chr7:158153253C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TRAPPC9	83696	broad.mit.edu	37	8	140769146	140769146	+	Intron	SNP	G	A	A			2011-2281:2012-1329-T	g.chr8:140769146G>A	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron	NM_001160372	NP_001153844
FLJ43860	389690	broad.mit.edu	37	8	142507385	142507385	+	Intron	SNP	C	G	G	rs112237873		2011-2281:2012-1329-T	g.chr8:142507385C>G	uc003ywi.2	-						FLJ43860_uc011ljs.1_5'Flank|FLJ43860_uc010meu.1_5'Flank	NM_207414	NP_997297
RALGDS	5900	broad.mit.edu	37	9	135999394	135999394	+	5'Flank	SNP	G	C	C			2011-2281:2012-1329-T	g.chr9:135999394G>C	uc004cco.2	-						RALGDS_uc004ccp.2_5'Flank|RALGDS_uc004ccq.2_5'Flank|RALGDS_uc004ccr.2_Intron|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Intron|RALGDS_uc011mcw.1_Intron	NM_006266	NP_006257
PPP2R3B	28227	broad.mit.edu	37	X	303062	303062	+	Intron	SNP	T	G	G			2011-2281:2012-1329-T	g.chrX:303062T>G	uc004cpg.2	-						PPP2R3B_uc004cpf.2_5'Flank	NM_013239	NP_037371
GPR174	84636	broad.mit.edu	37	X	78426471	78426471	+	5'UTR	SNP	C	T	T	rs3810712	by1000genomes	2011-2281:2012-1329-T	g.chrX:78426471C>T	uc004edg.1	+	1						NM_032553	NP_115942
GPR174	84636	broad.mit.edu	37	X	78426488	78426488	+	5'UTR	SNP	T	C	C	rs3810711	by1000genomes	2011-2281:2012-1329-T	g.chrX:78426488T>C	uc004edg.1	+	1						NM_032553	NP_115942
HDX	139324	broad.mit.edu	37	X	83757817	83757817	+	5'Flank	SNP	G	A	A	rs2294339	by1000genomes	2011-2281:2012-1329-T	g.chrX:83757817G>A	uc004eek.1	-						HDX_uc011mqv.1_5'Flank|HDX_uc004eel.1_5'Flank	NM_144657	NP_653258
IRF6	3664	broad.mit.edu	37	1	209969822	209969822	+	Missense_Mutation	SNP	G	A	A	rs121434226		2011-2282:2012-1330-T	g.chr1:209969822G>A	uc001hhq.1	-	4	513	c.250C>T	c.(250-252)CGC>TGC	p.R84C	IRF6_uc010psm.1_5'UTR|IRF6_uc009xct.1_Missense_Mutation_p.R84C	NM_006147	NP_006138
USH2A	7399	broad.mit.edu	37	1	216246085	216246085	+	Intron	SNP	A	G	G			2011-2282:2012-1330-T	g.chr1:216246085A>G	uc001hku.1	-							NM_206933	NP_996816
KDM5A	5927	broad.mit.edu	37	12	443484	443484	+	Silent	SNP	G	C	C			2011-2282:2012-1330-T	g.chr12:443484G>C	uc001qif.1	-	11	1776	c.1413C>G	c.(1411-1413)CTC>CTG	p.L471L	KDM5A_uc001qie.1_Silent_p.L471L|KDM5A_uc010sdn.1_Silent_p.L430L|KDM5A_uc010sdo.1_Silent_p.L90L	NM_001042603	NP_001036068
MLL2	8085	broad.mit.edu	37	12	49428016	49428016	+	Missense_Mutation	SNP	A	G	G			2011-2282:2012-1330-T	g.chr12:49428016A>G	uc001rta.3	-	38	10574	c.10574T>C	c.(10573-10575)CTG>CCG	p.L3525P		NM_003482	NP_003473
MLL2	8085	broad.mit.edu	37	12	49439847	49439847	+	Splice_Site	SNP	C	A	A			2011-2282:2012-1330-T	g.chr12:49439847C>A	uc001rta.3	-	17	4693	c.4693_splice	c.e17+1	p.A1565_splice		NM_003482	NP_003473
NLRP11	204801	broad.mit.edu	37	19	56307574	56307574	+	Silent	SNP	G	A	A			2011-2282:2012-1330-T	g.chr19:56307574G>A	uc010ygf.1	-	8	2925	c.2214C>T	c.(2212-2214)ATC>ATT	p.I738I	NLRP11_uc002qlz.2_Silent_p.I585I|NLRP11_uc002qmb.2_Silent_p.I639I|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444
CD8A	925	broad.mit.edu	37	2	87017667	87017667	+	Missense_Mutation	SNP	C	T	T			2011-2282:2012-1330-T	g.chr2:87017667C>T	uc002srt.2	-	2	1076	c.187G>A	c.(187-189)GCC>ACC	p.A63T	RMND5A_uc002srs.3_Intron|CD8A_uc002srv.2_Missense_Mutation_p.A63T|CD8A_uc010ytn.1_Missense_Mutation_p.A104T|CD8A_uc002sru.2_Missense_Mutation_p.A63T	NM_001768	NP_001759
NFE2L2	4780	broad.mit.edu	37	2	178097443	178097443	+	Intron	SNP	C	A	A			2011-2282:2012-1330-T	g.chr2:178097443C>A	uc002ulh.3	-						NFE2L2_uc002ulg.3_Intron|NFE2L2_uc010zfa.1_Intron|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_3'UTR	NM_006164	NP_006155
CASP8	841	broad.mit.edu	37	2	202106521	202106521	+	Intron	SNP	C	T	T			2011-2282:2012-1330-T	g.chr2:202106521C>T	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxn.2_RNA	NM_033355	NP_203519
MAP2	4133	broad.mit.edu	37	2	210595760	210595760	+	3'UTR	SNP	T	C	C			2011-2282:2012-1330-T	g.chr2:210595760T>C	uc002vde.1	+	15					MAP2_uc002vdd.1_3'UTR|MAP2_uc002vdf.1_3'UTR|MAP2_uc002vdg.1_3'UTR|MAP2_uc002vdh.1_3'UTR|MAP2_uc002vdi.1_3'UTR	NM_002374	NP_002365
TGFBR2	7048	broad.mit.edu	37	3	30715685	30715685	+	Missense_Mutation	SNP	A	G	G			2011-2282:2012-1330-T	g.chr3:30715685A>G	uc003ceo.2	+	5	1725	c.1343A>G	c.(1342-1344)TAC>TGC	p.Y448C	TGFBR2_uc003cen.2_Missense_Mutation_p.Y473C	NM_003242	NP_003233
FGFR3	2261	broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	G	G	rs121913483		2011-2282:2012-1330-T	g.chr4:1803568C>G	uc003gdr.3	+	7	1002	c.746C>G	c.(745-747)TCC>TGC	p.S249C	FGFR3_uc003gdu.2_Missense_Mutation_p.S249C|FGFR3_uc003gds.3_Missense_Mutation_p.S249C|FGFR3_uc003gdq.3_Missense_Mutation_p.S249C|FGFR3_uc010icb.1_Missense_Mutation_p.S91C|FGFR3_uc003gdt.1_Missense_Mutation_p.S91C	NM_000142	NP_000133
SMOC2	64094	broad.mit.edu	37	6	169014616	169014616	+	Intron	SNP	G	T	T			2011-2282:2012-1330-T	g.chr6:169014616G>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
PKD1L1	168507	broad.mit.edu	37	7	47852808	47852808	+	Silent	SNP	C	G	G			2011-2282:2012-1330-T	g.chr7:47852808C>G	uc003tny.1	-	49	7257	c.7257G>C	c.(7255-7257)CTG>CTC	p.L2419L	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Silent_p.L146L	NM_138295	NP_612152
GRM8	2918	broad.mit.edu	37	7	126173758	126173758	+	Nonsense_Mutation	SNP	G	A	A			2011-2282:2012-1330-T	g.chr7:126173758G>A	uc003vlr.2	-	8	1989	c.1678C>T	c.(1678-1680)CAG>TAG	p.Q560*	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Nonsense_Mutation_p.Q560*|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836
PKHD1L1	93035	broad.mit.edu	37	8	110401434	110401434	+	Intron	SNP	C	A	A			2011-2282:2012-1330-T	g.chr8:110401434C>A	uc003yne.2	+							NM_177531	NP_803875
KIAA2022	340533	broad.mit.edu	37	X	73963887	73963887	+	Missense_Mutation	SNP	C	T	T			2011-2282:2012-1330-T	g.chrX:73963887C>T	uc004eby.2	-	3	1122	c.505G>A	c.(505-507)GAT>AAT	p.D169N		NM_001008537	NP_001008537
FLG	2312	broad.mit.edu	37	1	152280002	152280002	+	Missense_Mutation	SNP	T	C	C			2011-2283:2012-316-T	g.chr1:152280002T>C	uc001ezu.1	-	3	7396	c.7360A>G	c.(7360-7362)ACG>GCG	p.T2454A		NM_002016	NP_002007
ADARB2	105	broad.mit.edu	37	10	1282029	1282029	+	Intron	SNP	C	A	A			2011-2283:2012-316-T	g.chr10:1282029C>A	uc009xhq.2	-							NM_018702	NP_061172
STYK1	55359	broad.mit.edu	37	12	10772744	10772744	+	Nonstop_Mutation	SNP	C	G	G			2011-2283:2012-316-T	g.chr12:10772744C>G	uc001qys.2	-	11	1789	c.1268G>C	c.(1267-1269)TGA>TCA	p.*423S		NM_018423	NP_060893
NAV3	89795	broad.mit.edu	37	12	78225426	78225426	+	Missense_Mutation	SNP	G	T	T			2011-2283:2012-316-T	g.chr12:78225426G>T	uc001syp.2	+	1	358	c.185G>T	c.(184-186)TGT>TTT	p.C62F	NAV3_uc001syo.2_Missense_Mutation_p.C62F	NM_014903	NP_055718
CDADC1	81602	broad.mit.edu	37	13	49866322	49866322	+	3'UTR	SNP	C	T	T	rs9535193	by1000genomes	2011-2283:2012-316-T	g.chr13:49866322C>T	uc001vcu.2	+	10					CDADC1_uc010tgk.1_3'UTR|CDADC1_uc001vcv.2_RNA	NM_030911	NP_112173
COL4A2	1284	broad.mit.edu	37	13	111007803	111007803	+	Intron	SNP	G	T	T			2011-2283:2012-316-T	g.chr13:111007803G>T	uc001vqx.2	+							NM_001846	NP_001837
ATP11A	23250	broad.mit.edu	37	13	113494587	113494587	+	Intron	SNP	C	A	A	rs35327689		2011-2283:2012-316-T	g.chr13:113494587C>A	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc001vsm.1_Intron|ATP11A_uc010ago.2_5'Flank	NM_015205	NP_056020
ABR	29	broad.mit.edu	37	17	1021198	1021198	+	Intron	SNP	G	A	A			2011-2283:2012-316-T	g.chr17:1021198G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
TP53	7157	broad.mit.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	C	C	rs121912666		2011-2283:2012-316-T	g.chr17:7578190T>C	uc002gim.2	-	6	853	c.659A>G	c.(658-660)TAT>TGT	p.Y220C	TP53_uc002gig.1_Missense_Mutation_p.Y220C|TP53_uc002gih.2_Missense_Mutation_p.Y220C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.Y88C|TP53_uc010cng.1_Missense_Mutation_p.Y88C|TP53_uc002gii.1_Missense_Mutation_p.Y88C|TP53_uc010cnh.1_Missense_Mutation_p.Y220C|TP53_uc010cni.1_Missense_Mutation_p.Y220C|TP53_uc002gij.2_Missense_Mutation_p.Y220C|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.Y127C|TP53_uc002gio.2_Missense_Mutation_p.Y88C|TP53_uc010vug.1_Missense_Mutation_p.Y181C	NM_001126112	NP_001119584
MYH8	4626	broad.mit.edu	37	17	10299694	10299694	+	Missense_Mutation	SNP	C	T	T			2011-2283:2012-316-T	g.chr17:10299694C>T	uc002gmm.2	-	33	4701	c.4606G>A	c.(4606-4608)GTA>ATA	p.V1536I	uc002gml.1_Intron	NM_002472	NP_002463
ABCA6	23460	broad.mit.edu	37	17	67099138	67099138	+	Intron	SNP	T	C	C			2011-2283:2012-316-T	g.chr17:67099138T>C	uc002jhw.1	-							NM_080284	NP_525023
ZNF521	25925	broad.mit.edu	37	18	22932442	22932442	+	5'Flank	SNP	C	G	G			2011-2283:2012-316-T	g.chr18:22932442C>G	uc002kvk.2	-						ZNF521_uc010xbe.1_5'Flank|ZNF521_uc010dly.2_5'Flank|ZNF521_uc002kvl.2_5'Flank	NM_015461	NP_056276
DOT1L	84444	broad.mit.edu	37	19	2201048	2201048	+	Intron	SNP	G	T	T			2011-2283:2012-316-T	g.chr19:2201048G>T	uc002lvb.3	+							NM_032482	NP_115871
NTN5	126147	broad.mit.edu	37	19	49172581	49172581	+	Intron	SNP	T	C	C			2011-2283:2012-316-T	g.chr19:49172581T>C	uc002pkb.2	-						SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Intron	NM_145807	NP_665806
MAP2	4133	broad.mit.edu	37	2	210568774	210568774	+	Intron	SNP	G	A	A			2011-2283:2012-316-T	g.chr2:210568774G>A	uc002vde.1	+						MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Intron	NM_002374	NP_002365
HDAC4	9759	broad.mit.edu	37	2	240203285	240203285	+	Intron	SNP	C	T	T			2011-2283:2012-316-T	g.chr2:240203285C>T	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron	NM_006037	NP_006028
PRDM15	63977	broad.mit.edu	37	21	43226374	43226374	+	Intron	SNP	C	T	T			2011-2283:2012-316-T	g.chr21:43226374C>T	uc002yzq.1	-						PRDM15_uc002yzo.2_Intron|PRDM15_uc002yzp.2_Intron|PRDM15_uc002yzr.1_Intron	NM_022115	NP_071398
SI	6476	broad.mit.edu	37	3	164754257	164754257	+	Missense_Mutation	SNP	T	C	C			2011-2283:2012-316-T	g.chr3:164754257T>C	uc003fei.2	-	22	2497	c.2435A>G	c.(2434-2436)AAT>AGT	p.N812S		NM_001041	NP_001032
MUC4	4585	broad.mit.edu	37	3	195504401	195504401	+	Intron	SNP	C	G	G			2011-2283:2012-316-T	g.chr3:195504401C>G	uc011bto.1	-						MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FAT1	2195	broad.mit.edu	37	4	187630427	187630427	+	Nonsense_Mutation	SNP	G	T	T			2011-2283:2012-316-T	g.chr4:187630427G>T	uc003izf.2	-	2	743	c.555C>A	c.(553-555)TAC>TAA	p.Y185*	FAT1_uc010iso.1_Nonsense_Mutation_p.Y185*	NM_005245	NP_005236
PRDM9	56979	broad.mit.edu	37	5	23522457	23522457	+	Missense_Mutation	SNP	G	A	A			2011-2283:2012-316-T	g.chr5:23522457G>A	uc003jgo.2	+	7	735	c.553G>A	c.(553-555)GAA>AAA	p.E185K		NM_020227	NP_064612
FAT2	2196	broad.mit.edu	37	5	150911081	150911081	+	Intron	SNP	G	A	A			2011-2283:2012-316-T	g.chr5:150911081G>A	uc003lue.3	-						GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Intron	NM_001447	NP_001438
UNC5A	90249	broad.mit.edu	37	5	176299785	176299786	+	Intron	DNP	CT	TC	TC			2011-2283:2012-316-T	g.chr5:176299785_176299786CT>TC	uc003mey.2	+						UNC5A_uc010jkg.1_Intron	NM_133369	NP_588610
HLA-G	3135	broad.mit.edu	37	6	29910176	29910176	+	Intron	SNP	C	T	T	rs113695104		2011-2283:2012-316-T	g.chr6:29910176C>T	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29910189	29910189	+	Intron	SNP	A	T	T	rs112660675		2011-2283:2012-316-T	g.chr6:29910189A>T	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
HLA-A	3105	broad.mit.edu	37	6	29910892	29910892	+	Intron	SNP	A	G	G	rs9260145		2011-2283:2012-316-T	g.chr6:29910892A>G	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107
HLA-C	3107	broad.mit.edu	37	6	31238728	31238728	+	Intron	SNP	G	C	C	rs74532133		2011-2283:2012-316-T	g.chr6:31238728G>C	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Intron	NM_002117	NP_002108
HLA-C	3107	broad.mit.edu	37	6	31238759	31238759	+	Intron	SNP	C	T	T	rs114028214	by1000genomes	2011-2283:2012-316-T	g.chr6:31238759C>T	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Intron	NM_002117	NP_002108
HLA-C	3107	broad.mit.edu	37	6	31238762	31238762	+	Intron	SNP	T	C	C	rs112202897		2011-2283:2012-316-T	g.chr6:31238762T>C	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Intron	NM_002117	NP_002108
SMOC2	64094	broad.mit.edu	37	6	169014436	169014436	+	Intron	SNP	C	T	T	rs149703584	by1000genomes	2011-2283:2012-316-T	g.chr6:169014436C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
EGFR	1956	broad.mit.edu	37	7	55227909	55227909	+	Missense_Mutation	SNP	G	C	C			2011-2283:2012-316-T	g.chr7:55227909G>C	uc003tqk.2	+	12	1622	c.1376G>C	c.(1375-1377)GGA>GCA	p.G459A	EGFR_uc003tqi.2_Missense_Mutation_p.G459A|EGFR_uc003tqj.2_Missense_Mutation_p.G459A|EGFR_uc010kzg.1_Missense_Mutation_p.G414A|EGFR_uc011kco.1_Missense_Mutation_p.G406A|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
EGFR	1956	broad.mit.edu	37	7	55269026	55269026	+	Missense_Mutation	SNP	G	A	A			2011-2283:2012-316-T	g.chr7:55269026G>A	uc003tqk.2	+	25	3338	c.3092G>A	c.(3091-3093)CGG>CAG	p.R1031Q	EGFR_uc010kzg.1_Missense_Mutation_p.R986Q|EGFR_uc011kco.1_Missense_Mutation_p.R978Q	NM_005228	NP_005219
PKHD1L1	93035	broad.mit.edu	37	8	110534988	110534988	+	Missense_Mutation	SNP	G	C	C			2011-2283:2012-316-T	g.chr8:110534988G>C	uc003yne.2	+	75	12303	c.12199G>C	c.(12199-12201)GTT>CTT	p.V4067L		NM_177531	NP_803875
RECQL4	9401	broad.mit.edu	37	8	145741367	145741367	+	Intron	SNP	C	G	G			2011-2283:2012-316-T	g.chr8:145741367C>G	uc003zdj.2	-						LRRC14_uc003zdk.1_5'Flank|LRRC14_uc003zdl.1_5'Flank	NM_004260	NP_004251
CD274	29126	broad.mit.edu	37	9	5467955	5467955	+	3'UTR	SNP	G	A	A	rs2297136	by1000genomes	2011-2283:2012-316-T	g.chr9:5467955G>A	uc003zje.2	+	7					C9orf46_uc003zjd.2_Intron|CD274_uc010mhn.2_RNA|CD274_uc003zjf.2_3'UTR	NM_014143	NP_054862
CDKN2A	1029	broad.mit.edu	37	9	21971080	21971080	+	Missense_Mutation	SNP	G	T	T			2011-2283:2012-316-T	g.chr9:21971080G>T	uc003zpk.2	-	2	490	c.278C>A	c.(277-279)ACG>AAG	p.T93K	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.H148Q	NM_000077	NP_000068
HUWE1	10075	broad.mit.edu	37	X	53641704	53641704	+	Silent	SNP	T	C	C			2011-2283:2012-316-T	g.chrX:53641704T>C	uc004dsp.2	-	23	2454	c.2052A>G	c.(2050-2052)TTA>TTG	p.L684L		NM_031407	NP_113584
HUWE1	10075	broad.mit.edu	37	X	53710799	53710799	+	Intron	SNP	A	C	C			2011-2283:2012-316-T	g.chrX:53710799A>C	uc004dsp.2	-							NM_031407	NP_113584
SERINC2	347735	broad.mit.edu	37	1	31904948	31904948	+	Intron	SNP	A	T	T			2011-2284:2012-315-T	g.chr1:31904948A>T	uc010ogh.1	+						SERINC2_uc010ogg.1_Intron|SERINC2_uc001bst.2_Intron|SERINC2_uc001bsu.2_Intron|SERINC2_uc001bsv.2_Intron	NM_178865	NP_849196
NOTCH2	4853	broad.mit.edu	37	1	120457988	120457988	+	Missense_Mutation	SNP	G	A	A			2011-2284:2012-315-T	g.chr1:120457988G>A	uc001eik.2	-	34	7613	c.7357C>T	c.(7357-7359)CGG>TGG	p.R2453W		NM_024408	NP_077719
BCL9	607	broad.mit.edu	37	1	147076669	147076669	+	5'UTR	SNP	G	A	A			2011-2284:2012-315-T	g.chr1:147076669G>A	uc001epq.2	+	2						NM_004326	NP_004317
PDE3A	5139	broad.mit.edu	37	12	20766536	20766536	+	Missense_Mutation	SNP	C	T	T			2011-2284:2012-315-T	g.chr12:20766536C>T	uc001reh.1	+	3	1193	c.1171C>T	c.(1171-1173)CAC>TAC	p.H391Y		NM_000921	NP_000912
NAV3	89795	broad.mit.edu	37	12	78225464	78225464	+	Missense_Mutation	SNP	A	G	G			2011-2284:2012-315-T	g.chr12:78225464A>G	uc001syp.2	+	1	396	c.223A>G	c.(223-225)AAG>GAG	p.K75E	NAV3_uc001syo.2_Missense_Mutation_p.K75E	NM_014903	NP_055718
FANCA	2175	broad.mit.edu	37	16	89818491	89818491	+	Intron	SNP	T	C	C	rs3743860	by1000genomes	2011-2284:2012-315-T	g.chr16:89818491T>C	uc002fou.1	-						FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_Intron	NM_000135	NP_000126
TP53	7157	broad.mit.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	rs28934578		2011-2284:2012-315-T	g.chr17:7578406C>T	uc002gim.2	-	5	718	c.524G>A	c.(523-525)CGC>CAC	p.R175H	TP53_uc002gig.1_Missense_Mutation_p.R175H|TP53_uc002gih.2_Missense_Mutation_p.R175H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R43H|TP53_uc010cng.1_Missense_Mutation_p.R43H|TP53_uc002gii.1_Missense_Mutation_p.R43H|TP53_uc010cnh.1_Missense_Mutation_p.R175H|TP53_uc010cni.1_Missense_Mutation_p.R175H|TP53_uc002gij.2_Missense_Mutation_p.R175H|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R82H|TP53_uc002gio.2_Missense_Mutation_p.R43H|TP53_uc010vug.1_Missense_Mutation_p.R136H	NM_001126112	NP_001119584
PRKCA	5578	broad.mit.edu	37	17	64795570	64795570	+	Intron	SNP	T	C	C			2011-2284:2012-315-T	g.chr17:64795570T>C	uc002jfp.1	+							NM_002737	NP_002728
ABCA9	10350	broad.mit.edu	37	17	67016609	67016609	+	Silent	SNP	C	G	G	rs149228541	byFrequency	2011-2284:2012-315-T	g.chr17:67016609C>G	uc002jhu.2	-	19	2663	c.2520G>C	c.(2518-2520)GCG>GCC	p.A840A	ABCA9_uc010dez.2_Silent_p.A840A	NM_080283	NP_525022
PPP1R12C	54776	broad.mit.edu	37	19	55621749	55621749	+	Intron	SNP	T	C	C			2011-2284:2012-315-T	g.chr19:55621749T>C	uc002qix.2	-						PPP1R12C_uc010yfs.1_Intron|PPP1R12C_uc002qiy.2_Intron	NM_017607	NP_060077
PMS1	5378	broad.mit.edu	37	2	190649582	190649582	+	Intron	SNP	C	T	T	rs1899025	by1000genomes	2011-2284:2012-315-T	g.chr2:190649582C>T	uc002urh.3	+						PMS1_uc010zga.1_Intron|PMS1_uc010zgb.1_Intron|PMS1_uc002urk.3_Intron|PMS1_uc002uri.3_Intron|PMS1_uc010zgc.1_Intron|PMS1_uc010zgd.1_Intron|PMS1_uc002urj.2_Intron|ORMDL1_uc002urb.3_5'Flank|ORMDL1_uc002urc.3_5'Flank|ORMDL1_uc002urd.3_5'Flank|ORMDL1_uc002ure.3_5'Flank|ORMDL1_uc002urf.3_5'Flank|PMS1_uc010zfz.1_Intron	NM_000534	NP_000525
MAP2	4133	broad.mit.edu	37	2	210557834	210557834	+	Missense_Mutation	SNP	C	G	G			2011-2284:2012-315-T	g.chr2:210557834C>G	uc002vde.1	+	7	1188	c.940C>G	c.(940-942)CCA>GCA	p.P314A	MAP2_uc002vdc.1_Missense_Mutation_p.P314A|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.P310A	NM_002374	NP_002365
RIPK4	54101	broad.mit.edu	37	21	43165824	43165824	+	Intron	SNP	T	C	C	rs34366846	by1000genomes	2011-2284:2012-315-T	g.chr21:43165824T>C	uc002yzn.1	-							NM_020639	NP_065690
CTNNB1	1499	broad.mit.edu	37	3	41266495	41266495	+	Missense_Mutation	SNP	A	G	G			2011-2284:2012-315-T	g.chr3:41266495A>G	uc010hia.1	+	5	448	c.292A>G	c.(292-294)ATG>GTG	p.M98V	CTNNB1_uc003ckp.2_Missense_Mutation_p.M98V|CTNNB1_uc003ckq.2_Missense_Mutation_p.M98V|CTNNB1_uc003ckr.2_Missense_Mutation_p.M98V|CTNNB1_uc011azf.1_Missense_Mutation_p.M91V|CTNNB1_uc011azg.1_Missense_Mutation_p.M26V|uc010hib.1_RNA	NM_001904	NP_001895
MUC4	4585	broad.mit.edu	37	3	195503661	195503661	+	Intron	SNP	C	T	T			2011-2284:2012-315-T	g.chr3:195503661C>T	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
PCM1	5108	broad.mit.edu	37	8	17815338	17815338	+	Intron	SNP	G	T	T			2011-2284:2012-315-T	g.chr8:17815338G>T	uc003wyi.3	+						PCM1_uc011kyh.1_Intron|PCM1_uc003wyj.3_Intron|PCM1_uc010lta.1_Intron	NM_006197	NP_006188
TEX15	56154	broad.mit.edu	37	8	30700051	30700051	+	Silent	SNP	T	C	C			2011-2284:2012-315-T	g.chr8:30700051T>C	uc003xil.2	-	1	6483	c.6483A>G	c.(6481-6483)GAA>GAG	p.E2161E		NM_031271	NP_112561
CSMD3	114788	broad.mit.edu	37	8	113277803	113277803	+	Missense_Mutation	SNP	G	C	C			2011-2284:2012-315-T	g.chr8:113277803G>C	uc003ynu.2	-	60	9684	c.9525C>G	c.(9523-9525)GAC>GAG	p.D3175E	CSMD3_uc003yns.2_Missense_Mutation_p.D2377E|CSMD3_uc003ynt.2_Missense_Mutation_p.D3135E|CSMD3_uc011lhx.1_Missense_Mutation_p.D3006E	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	114290941	114290941	+	Intron	SNP	A	C	C			2011-2284:2012-315-T	g.chr8:114290941A>C	uc003ynu.2	-						CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc010mcx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	114290946	114290947	+	Intron	DNP	GG	AT	AT			2011-2284:2012-315-T	g.chr8:114290946_114290947GG>AT	uc003ynu.2	-						CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc010mcx.1_Intron	NM_198123	NP_937756
MTOR	2475	broad.mit.edu	37	1	11303304	11303304	+	Missense_Mutation	SNP	C	G	G			2011-2285:2012-326-T	g.chr1:11303304C>G	uc001asd.2	-	9	1400	c.1279G>C	c.(1279-1281)GAG>CAG	p.E427Q		NM_004958	NP_004949
PDE4DIP	9659	broad.mit.edu	37	1	144915469	144915469	+	Silent	SNP	C	A	A			2011-2285:2012-326-T	g.chr1:144915469C>A	uc001elw.3	-	14	2247	c.1956G>T	c.(1954-1956)GTG>GTT	p.V652V	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.V718V|PDE4DIP_uc001emc.1_Silent_p.V652V|PDE4DIP_uc001emd.1_Silent_p.V652V|PDE4DIP_uc001emb.1_Silent_p.V815V|PDE4DIP_uc001eme.1_Silent_p.V181V|PDE4DIP_uc001emf.1_Silent_p.V437V	NM_014644	NP_055459
ASH1L	55870	broad.mit.edu	37	1	155340687	155340687	+	Missense_Mutation	SNP	T	A	A			2011-2285:2012-326-T	g.chr1:155340687T>A	uc009wqq.2	-	11	6915	c.6435A>T	c.(6433-6435)CAA>CAT	p.Q2145H	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.Q2140H	NM_018489	NP_060959
SMYD3	64754	broad.mit.edu	37	1	246188255	246188255	+	Intron	SNP	T	C	C			2011-2285:2012-326-T	g.chr1:246188255T>C	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
CELF2	10659	broad.mit.edu	37	10	11326398	11326398	+	Intron	SNP	A	G	G			2011-2285:2012-326-T	g.chr10:11326398A>G	uc001iki.3	+						CELF2_uc010qbi.1_Intron|CELF2_uc010qbj.1_Intron|CELF2_uc001ikk.2_Intron|CELF2_uc001ikl.3_Intron|CELF2_uc010qbk.1_Intron|CELF2_uc010qbl.1_Intron|CELF2_uc010qbm.1_Intron|CELF2_uc001iko.3_Intron|CELF2_uc001ikp.3_Intron|CELF2_uc010qbn.1_Intron|CELF2_uc010qbo.1_Intron|CELF2_uc010qbp.1_Intron	NM_001025077	NP_001020248
FGFR2	2263	broad.mit.edu	37	10	123279745	123279745	+	Intron	SNP	C	T	T	rs2981448	by1000genomes	2011-2285:2012-326-T	g.chr10:123279745C>T	uc010qtk.1	-						FGFR2_uc010qtg.1_Intron|FGFR2_uc010qth.1_Intron|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Intron|FGFR2_uc010qtl.1_Intron|FGFR2_uc010qtm.1_Intron|FGFR2_uc001lfl.3_Intron|FGFR2_uc001lfm.2_Intron|FGFR2_uc001lfn.3_Intron|FGFR2_uc010qtn.1_Intron|FGFR2_uc010qto.1_Intron|FGFR2_uc001lfo.1_Intron|FGFR2_uc010qtp.1_Intron|FGFR2_uc001lfg.3_5'Flank	NM_000141	NP_000132
PKP3	11187	broad.mit.edu	37	11	398555	398555	+	Intron	SNP	G	A	A			2011-2285:2012-326-T	g.chr11:398555G>A	uc001lpc.2	+							NM_007183	NP_009114
TMEM132D	121256	broad.mit.edu	37	12	129573518	129573518	+	Intron	SNP	A	G	G			2011-2285:2012-326-T	g.chr12:129573518A>G	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
TMEM132D	121256	broad.mit.edu	37	12	129573526	129573526	+	Intron	SNP	C	T	T			2011-2285:2012-326-T	g.chr12:129573526C>T	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
COL4A2	1284	broad.mit.edu	37	13	111007831	111007831	+	Intron	SNP	T	G	G			2011-2285:2012-326-T	g.chr13:111007831T>G	uc001vqx.2	+							NM_001846	NP_001837
BRCA1	672	broad.mit.edu	37	17	41244812	41244812	+	Missense_Mutation	SNP	C	G	G			2011-2285:2012-326-T	g.chr17:41244812C>G	uc002icq.2	-	10	2968	c.2736G>C	c.(2734-2736)AAG>AAC	p.K912N	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.K841N|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.K865N|BRCA1_uc002ict.2_Missense_Mutation_p.K912N|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.K912N|BRCA1_uc002ide.1_Missense_Mutation_p.K743N|BRCA1_uc010cyy.1_Missense_Mutation_p.K912N|BRCA1_uc010whs.1_Missense_Mutation_p.K912N|BRCA1_uc010cyz.2_Missense_Mutation_p.K865N|BRCA1_uc010cza.2_Missense_Mutation_p.K886N|BRCA1_uc010wht.1_Missense_Mutation_p.K616N	NM_007294	NP_009225
NOTCH3	4854	broad.mit.edu	37	19	15290125	15290125	+	Intron	SNP	G	A	A	rs56061231	by1000genomes	2011-2285:2012-326-T	g.chr19:15290125G>A	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
CACNG7	59284	broad.mit.edu	37	19	54427653	54427653	+	Intron	SNP	C	T	T			2011-2285:2012-326-T	g.chr19:54427653C>T	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
PEG3	5178	broad.mit.edu	37	19	57327576	57327576	+	Missense_Mutation	SNP	T	A	A			2011-2285:2012-326-T	g.chr19:57327576T>A	uc002qnu.2	-	7	2585	c.2234A>T	c.(2233-2235)GAG>GTG	p.E745V	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E716V|PEG3_uc002qnv.2_Missense_Mutation_p.E745V|PEG3_uc002qnw.2_Missense_Mutation_p.E621V|PEG3_uc002qnx.2_Missense_Mutation_p.E619V|PEG3_uc010etr.2_Missense_Mutation_p.E745V	NM_001146186	NP_001139658
RMND5A	64795	broad.mit.edu	37	2	87580286	87580286	+	Intron	SNP	C	T	T			2011-2285:2012-326-T	g.chr2:87580286C>T	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141072669	141072669	+	Splice_Site	SNP	C	G	G			2011-2285:2012-326-T	g.chr2:141072669C>G	uc002tvj.1	-	83	13613	c.12641_splice	c.e83-1	p.D4214_splice		NM_018557	NP_061027
KCNQ2	3785	broad.mit.edu	37	20	62074043	62074043	+	Intron	SNP	C	T	T			2011-2285:2012-326-T	g.chr20:62074043C>T	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron|KCNQ2_uc002yfc.1_Intron	NM_172107	NP_742105
MLF1	4291	broad.mit.edu	37	3	158310278	158310278	+	Missense_Mutation	SNP	G	C	C			2011-2285:2012-326-T	g.chr3:158310278G>C	uc003fcb.2	+	2	240	c.103G>C	c.(103-105)GAA>CAA	p.E35Q	MLF1_uc003fbz.2_Missense_Mutation_p.E10Q|MLF1_uc003fca.2_Missense_Mutation_p.E10Q|MLF1_uc003fbx.2_Missense_Mutation_p.E10Q|MLF1_uc003fcc.2_Missense_Mutation_p.E51Q|MLF1_uc003fby.2_5'UTR|MLF1_uc010hvx.2_Missense_Mutation_p.E10Q	NM_022443	NP_071888
MUC4	4585	broad.mit.edu	37	3	195498049	195498049	+	Intron	SNP	T	C	C			2011-2285:2012-326-T	g.chr3:195498049T>C	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FGFR3	2261	broad.mit.edu	37	4	1806220	1806220	+	Missense_Mutation	SNP	G	C	C	rs140898926		2011-2285:2012-326-T	g.chr4:1806220G>C	uc003gdr.3	+	9	1495	c.1239G>C	c.(1237-1239)AAG>AAC	p.K413N	FGFR3_uc003gdu.2_Missense_Mutation_p.K415N|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Missense_Mutation_p.K413N	NM_000142	NP_000133
ADAMTS12	81792	broad.mit.edu	37	5	33576352	33576352	+	Nonsense_Mutation	SNP	G	C	C			2011-2285:2012-326-T	g.chr5:33576352G>C	uc003jia.1	-	19	3942	c.3779C>G	c.(3778-3780)TCA>TGA	p.S1260*	ADAMTS12_uc010iuq.1_Nonsense_Mutation_p.S1175*	NM_030955	NP_112217
PIK3R1	5295	broad.mit.edu	37	5	67591106	67591106	+	Missense_Mutation	SNP	A	G	G			2011-2285:2012-326-T	g.chr5:67591106A>G	uc003jva.2	+	13	2259	c.1699A>G	c.(1699-1701)AAA>GAA	p.K567E	PIK3R1_uc003jvb.2_Missense_Mutation_p.K567E|PIK3R1_uc003jvc.2_Missense_Mutation_p.K267E|PIK3R1_uc003jvd.2_Missense_Mutation_p.K297E|PIK3R1_uc003jve.2_Missense_Mutation_p.K246E|PIK3R1_uc011crb.1_Missense_Mutation_p.K237E	NM_181523	NP_852664
BPHL	670	broad.mit.edu	37	6	3146114	3146114	+	Intron	SNP	C	T	T			2011-2285:2012-326-T	g.chr6:3146114C>T	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
HLA-G	3135	broad.mit.edu	37	6	29797553	29797553	+	Intron	SNP	G	C	C	rs1632937		2011-2285:2012-326-T	g.chr6:29797553G>C	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
SYNE1	23345	broad.mit.edu	37	6	152784712	152784712	+	Intron	SNP	G	A	A			2011-2285:2012-326-T	g.chr6:152784712G>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
TCP10	6953	broad.mit.edu	37	6	167800462	167800462	+	5'Flank	SNP	G	A	A			2011-2285:2012-326-T	g.chr6:167800462G>A	uc003qvv.1	-						TCP10_uc003qvu.2_5'Flank|TCP10_uc003qvw.2_5'Flank	NM_004610	NP_004601
PRKAR1B	5575	broad.mit.edu	37	7	628243	628243	+	Intron	SNP	G	A	A			2011-2285:2012-326-T	g.chr7:628243G>A	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
WDR86	349136	broad.mit.edu	37	7	151094842	151094842	+	Intron	SNP	C	T	T	rs111479982		2011-2285:2012-326-T	g.chr7:151094842C>T	uc003wkb.2	-						WDR86_uc003wka.2_Intron|WDR86_uc011kvk.1_Intron|WDR86_uc003wkc.2_Intron	NM_198285	NP_938026
EHMT1	79813	broad.mit.edu	37	9	140675595	140675595	+	Intron	SNP	C	T	T	rs146534686	by1000genomes	2011-2285:2012-326-T	g.chr9:140675595C>T	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
KIAA0562	9731	broad.mit.edu	37	1	3741575	3741575	+	Intron	SNP	G	A	A			2011-2286:2012-1321-T	g.chr1:3741575G>A	uc001aky.2	-						KIAA0562_uc010nzm.1_Intron	NM_014704	NP_055519
LOC200030	200030	broad.mit.edu	37	1	148342562	148342562	+	Intron	SNP	A	G	G			2011-2286:2012-1321-T	g.chr1:148342562A>G	uc001eqf.2	-						LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_Intron|uc001erd.3_Intron|uc001erc.3_Intron|uc010paj.1_Intron|uc010pau.1_5'Flank|uc010pav.1_Intron|uc010paw.1_Intron	NM_017940	NP_060410
FLG2	388698	broad.mit.edu	37	1	152327409	152327409	+	Silent	SNP	G	A	A			2011-2286:2012-1321-T	g.chr1:152327409G>A	uc001ezw.3	-	3	2926	c.2853C>T	c.(2851-2853)CAC>CAT	p.H951H	uc001ezv.2_Intron	NM_001014342	NP_001014364
SPTA1	6708	broad.mit.edu	37	1	158589160	158589160	+	Intron	SNP	C	T	T	rs112185395	by1000genomes	2011-2286:2012-1321-T	g.chr1:158589160C>T	uc001fst.1	-							NM_003126	NP_003117
SPTA1	6708	broad.mit.edu	37	1	158614151	158614151	+	Missense_Mutation	SNP	C	G	G			2011-2286:2012-1321-T	g.chr1:158614151C>G	uc001fst.1	-	30	4429	c.4230G>C	c.(4228-4230)TGG>TGC	p.W1410C		NM_003126	NP_003117
DDR2	4921	broad.mit.edu	37	1	162737044	162737044	+	Silent	SNP	C	T	T			2011-2286:2012-1321-T	g.chr1:162737044C>T	uc001gcf.2	+	12	1653	c.1188C>T	c.(1186-1188)AGC>AGT	p.S396S	DDR2_uc001gcg.2_Silent_p.S396S	NM_001014796	NP_001014796
USH2A	7399	broad.mit.edu	37	1	216221721	216221721	+	Intron	SNP	C	T	T	rs10864227	by1000genomes	2011-2286:2012-1321-T	g.chr1:216221721C>T	uc001hku.1	-							NM_206933	NP_996816
LHPP	64077	broad.mit.edu	37	10	126299417	126299417	+	Intron	SNP	T	C	C			2011-2286:2012-1321-T	g.chr10:126299417T>C	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron|LHPP_uc009yaj.1_Intron	NM_022126	NP_071409
LHPP	64077	broad.mit.edu	37	10	126299421	126299421	+	Intron	SNP	C	T	T			2011-2286:2012-1321-T	g.chr10:126299421C>T	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron|LHPP_uc009yaj.1_Intron	NM_022126	NP_071409
OSBPL5	114879	broad.mit.edu	37	11	3164365	3164366	+	Intron	DNP	GG	CC	CC	rs112732788;rs111577322		2011-2286:2012-1321-T	g.chr11:3164365_3164366GG>CC	uc001lxk.2	-						OSBPL5_uc009ydw.2_Intron|OSBPL5_uc001lxl.2_Intron|OSBPL5_uc009ydx.2_Intron	NM_020896	NP_065947
ELP4	26610	broad.mit.edu	37	11	31669265	31669265	+	Intron	SNP	C	G	G			2011-2286:2012-1321-T	g.chr11:31669265C>G	uc001mtb.2	+						ELP4_uc001mta.1_Intron|ELP4_uc001mtc.2_Intron|ELP4_uc010rdz.1_Intron	NM_019040	NP_061913
CCND1	595	broad.mit.edu	37	11	69456016	69456016	+	5'UTR	SNP	G	A	A			2011-2286:2012-1321-T	g.chr11:69456016G>A	uc001opa.2	+	1						NM_053056	NP_444284
MLL2	8085	broad.mit.edu	37	12	49435443	49435443	+	Nonsense_Mutation	SNP	G	A	A			2011-2286:2012-1321-T	g.chr12:49435443G>A	uc001rta.3	-	30	6229	c.6229C>T	c.(6229-6231)CAG>TAG	p.Q2077*		NM_003482	NP_003473
NAV3	89795	broad.mit.edu	37	12	78513016	78513016	+	Splice_Site	SNP	G	T	T			2011-2286:2012-1321-T	g.chr12:78513016G>T	uc001syp.2	+	15	3214	c.3041_splice	c.e15-1	p.G1014_splice	NAV3_uc001syo.2_Splice_Site_p.G1014_splice|NAV3_uc010sub.1_Splice_Site_p.G514_splice|NAV3_uc009zsf.2_Splice_Site_p.G22_splice	NM_014903	NP_055718
CDADC1	81602	broad.mit.edu	37	13	49821784	49821784	+	5'Flank	SNP	G	A	A			2011-2286:2012-1321-T	g.chr13:49821784G>A	uc001vcu.2	+						CDADC1_uc001vcs.1_5'Flank|CDADC1_uc001vct.1_5'Flank|CDADC1_uc010tgk.1_5'Flank|CDADC1_uc001vcv.2_5'Flank	NM_030911	NP_112173
SYNE2	23224	broad.mit.edu	37	14	64634049	64634049	+	Silent	SNP	A	G	G			2011-2286:2012-1321-T	g.chr14:64634049A>G	uc001xgm.2	+	91	16934	c.16704A>G	c.(16702-16704)TTA>TTG	p.L5568L	SYNE2_uc001xgl.2_Silent_p.L5568L|SYNE2_uc010apy.2_Silent_p.L1953L|SYNE2_uc001xgn.2_Silent_p.L530L|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_5'UTR|SYNE2_uc001xgq.2_5'Flank	NM_015180	NP_055995
HAPLN3	145864	broad.mit.edu	37	15	89436295	89436295	+	Intron	SNP	G	A	A	rs8039131	by1000genomes	2011-2286:2012-1321-T	g.chr15:89436295G>A	uc002bnc.2	-						HAPLN3_uc002bne.2_Intron|HAPLN3_uc002bnd.2_Nonsense_Mutation_p.Q17*	NM_178232	NP_839946
TSC2	7249	broad.mit.edu	37	16	2105335	2105335	+	Intron	SNP	C	G	G	rs2516734	by1000genomes	2011-2286:2012-1321-T	g.chr16:2105335C>G	uc002con.2	+						TSC2_uc010bsd.2_Intron|TSC2_uc002coo.2_Intron|TSC2_uc010uvv.1_Intron|TSC2_uc010uvw.1_Intron|TSC2_uc002cop.2_Intron	NM_000548	NP_000539
ZFPM1	161882	broad.mit.edu	37	16	88552870	88552870	+	Intron	SNP	G	T	T			2011-2286:2012-1321-T	g.chr16:88552870G>T	uc002fkv.2	+							NM_153813	NP_722520
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	A	A	rs11540652		2011-2286:2012-1321-T	g.chr17:7577538C>A	uc002gim.2	-	7	937	c.743G>T	c.(742-744)CGG>CTG	p.R248L	TP53_uc002gig.1_Missense_Mutation_p.R248L|TP53_uc002gih.2_Missense_Mutation_p.R248L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116L|TP53_uc010cng.1_Missense_Mutation_p.R116L|TP53_uc002gii.1_Missense_Mutation_p.R116L|TP53_uc010cnh.1_Missense_Mutation_p.R248L|TP53_uc010cni.1_Missense_Mutation_p.R248L|TP53_uc002gij.2_Missense_Mutation_p.R248L|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155L|TP53_uc002gio.2_Missense_Mutation_p.R116L	NM_001126112	NP_001119584
CCDC57	284001	broad.mit.edu	37	17	80108097	80108097	+	Intron	SNP	C	A	A			2011-2286:2012-1321-T	g.chr17:80108097C>A	uc002kdx.1	-						CCDC57_uc002kdy.2_Intron	NM_198082	NP_932348
DCC	1630	broad.mit.edu	37	18	50912476	50912476	+	Missense_Mutation	SNP	T	C	C			2011-2286:2012-1321-T	g.chr18:50912476T>C	uc002lfe.1	+	16	3010	c.2423T>C	c.(2422-2424)CTT>CCT	p.L808P	DCC_uc010xdr.1_Missense_Mutation_p.L656P|DCC_uc010dpf.1_Missense_Mutation_p.L463P	NM_005215	NP_005206
KCNG2	26251	broad.mit.edu	37	18	77625274	77625274	+	Intron	SNP	G	A	A			2011-2286:2012-1321-T	g.chr18:77625274G>A	uc010xfl.1	+							NM_012283	NP_036415
KEAP1	9817	broad.mit.edu	37	19	10602620	10602620	+	Missense_Mutation	SNP	G	A	A			2011-2286:2012-1321-T	g.chr19:10602620G>A	uc002moq.1	-	3	1114	c.958C>T	c.(958-960)CGG>TGG	p.R320W	KEAP1_uc002mop.1_Missense_Mutation_p.R38W|KEAP1_uc002mor.1_Missense_Mutation_p.R320W	NM_012289	NP_036421
TPRX1	284355	broad.mit.edu	37	19	48305666	48305666	+	Missense_Mutation	SNP	A	C	C			2011-2286:2012-1321-T	g.chr19:48305666A>C	uc002php.1	-	2	673	c.602T>G	c.(601-603)GTC>GGC	p.V201G		NM_198479	NP_940881
ZNF578	147660	broad.mit.edu	37	19	52977439	52977439	+	Intron	SNP	C	T	T			2011-2286:2012-1321-T	g.chr19:52977439C>T	uc002pzp.3	+							NM_001099694	NP_001093164
NLRP4	147945	broad.mit.edu	37	19	56363616	56363616	+	Missense_Mutation	SNP	A	G	G			2011-2286:2012-1321-T	g.chr19:56363616A>G	uc002qmd.3	+	2	592	c.170A>G	c.(169-171)AAC>AGC	p.N57S		NM_134444	NP_604393
SNTG2	54221	broad.mit.edu	37	2	1112701	1112701	+	Intron	SNP	G	T	T			2011-2286:2012-1321-T	g.chr2:1112701G>T	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
TPO	7173	broad.mit.edu	37	2	1515057	1515057	+	Intron	SNP	G	A	A	rs4927587		2011-2286:2012-1321-T	g.chr2:1515057G>A	uc002qww.2	+						TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Intron|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Intron|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538
RMND5A	64795	broad.mit.edu	37	2	87624066	87624066	+	Intron	SNP	A	T	T			2011-2286:2012-1321-T	g.chr2:87624066A>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87633651	87633651	+	Intron	SNP	C	A	A			2011-2286:2012-1321-T	g.chr2:87633651C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87634113	87634113	+	Intron	SNP	C	A	A			2011-2286:2012-1321-T	g.chr2:87634113C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87634178	87634178	+	Intron	SNP	C	A	A			2011-2286:2012-1321-T	g.chr2:87634178C>A	uc002srs.3	+								
GLI2	2736	broad.mit.edu	37	2	121582949	121582949	+	Intron	SNP	A	G	G	rs13387683	byFrequency;by1000genomes	2011-2286:2012-1321-T	g.chr2:121582949A>G	uc010flp.2	+						GLI2_uc010yyu.1_Intron|GLI2_uc002tmp.1_Intron|GLI2_uc010fln.1_Intron|GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Intron|GLI2_uc010flo.1_Intron|GLI2_uc002tmw.1_Intron	NM_005270	NP_005261
LRP1B	53353	broad.mit.edu	37	2	141253400	141253400	+	Intron	SNP	G	A	A			2011-2286:2012-1321-T	g.chr2:141253400G>A	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141259297	141259297	+	Nonsense_Mutation	SNP	C	A	A			2011-2286:2012-1321-T	g.chr2:141259297C>A	uc002tvj.1	-	55	9781	c.8809G>T	c.(8809-8811)GGA>TGA	p.G2937*		NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141641570	141641570	+	Missense_Mutation	SNP	C	A	A			2011-2286:2012-1321-T	g.chr2:141641570C>A	uc002tvj.1	-	25	4957	c.3985G>T	c.(3985-3987)GTT>TTT	p.V1329F	LRP1B_uc010fnl.1_Missense_Mutation_p.V511F	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179577255	179577255	+	Nonsense_Mutation	SNP	C	A	A			2011-2286:2012-1321-T	g.chr2:179577255C>A	uc010zfg.1	-	92	23886	c.23662G>T	c.(23662-23664)GAG>TAG	p.E7888*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.E4549*	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179584009	179584009	+	Silent	SNP	C	T	T			2011-2286:2012-1321-T	g.chr2:179584009C>T	uc010zfg.1	-	80	20600	c.20376G>A	c.(20374-20376)TCG>TCA	p.S6792S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S3453S	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179588531	179588531	+	Intron	SNP	A	G	G			2011-2286:2012-1321-T	g.chr2:179588531A>G	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133378	NP_596869
C2orf83	56918	broad.mit.edu	37	2	228482297	228482297	+	Intron	SNP	C	T	T	rs112642205		2011-2286:2012-1321-T	g.chr2:228482297C>T	uc002vph.2	-						C2orf83_uc010zlu.1_Intron	NM_020161	NP_064546
PLCB1	23236	broad.mit.edu	37	20	8626850	8626850	+	Intron	SNP	G	A	A	rs7273982	by1000genomes	2011-2286:2012-1321-T	g.chr20:8626850G>A	uc002wnb.2	+						PLCB1_uc010zrb.1_Intron|PLCB1_uc010gbv.1_Intron|PLCB1_uc002wmz.1_Intron|PLCB1_uc002wna.2_Intron|PLCB1_uc002wnc.1_Intron	NM_015192	NP_056007
MX2	4600	broad.mit.edu	37	21	42778886	42778886	+	Silent	SNP	C	T	T			2011-2286:2012-1321-T	g.chr21:42778886C>T	uc002yzf.1	+	13	1970	c.1866C>T	c.(1864-1866)TCC>TCT	p.S622S	MX2_uc002yzg.1_Silent_p.S345S|MX2_uc010gop.1_Silent_p.S104S	NM_002463	NP_002454
THOC5	8563	broad.mit.edu	37	22	29905735	29905735	+	Intron	SNP	C	G	G	rs7292442		2011-2286:2012-1321-T	g.chr22:29905735C>G	uc003afr.2	-						THOC5_uc003afq.2_Intron|THOC5_uc003afs.2_Intron|THOC5_uc003aft.2_Intron|THOC5_uc003afu.2_Intron|THOC5_uc010gvo.2_Intron	NM_001002878	NP_001002878
XRCC6	2547	broad.mit.edu	37	22	42024404	42024404	+	Intron	SNP	A	G	G			2011-2286:2012-1321-T	g.chr22:42024404A>G	uc003bao.1	+						XRCC6_uc003bap.1_Intron|XRCC6_uc011apc.1_Intron|XRCC6_uc003baq.1_Intron|XRCC6_uc003bar.1_Intron|XRCC6_uc003bas.1_Intron	NM_001469	NP_001460
ALG12	79087	broad.mit.edu	37	22	50305724	50305724	+	Intron	SNP	G	A	A	rs151082626	by1000genomes	2011-2286:2012-1321-T	g.chr22:50305724G>A	uc003biy.2	-							NM_024105	NP_077010
EPHA3	2042	broad.mit.edu	37	3	89390228	89390228	+	Intron	SNP	A	T	T			2011-2286:2012-1321-T	g.chr3:89390228A>T	uc003dqy.2	+						EPHA3_uc003dqx.1_Intron|EPHA3_uc010hon.1_Intron	NM_005233	NP_005224
EPHA3	2042	broad.mit.edu	37	3	89468508	89468508	+	Missense_Mutation	SNP	A	G	G			2011-2286:2012-1321-T	g.chr3:89468508A>G	uc003dqy.2	+	11	2267	c.2042A>G	c.(2041-2043)AAT>AGT	p.N681S	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224
PIK3CB	5291	broad.mit.edu	37	3	138452152	138452152	+	Intron	SNP	T	C	C			2011-2286:2012-1321-T	g.chr3:138452152T>C	uc011bmq.1	-							NM_006219	NP_006210
MLF1	4291	broad.mit.edu	37	3	158323000	158323000	+	3'UTR	SNP	G	T	T			2011-2286:2012-1321-T	g.chr3:158323000G>T	uc003fcb.2	+	7					MLF1_uc003fbz.2_3'UTR|MLF1_uc003fca.2_3'UTR|MLF1_uc003fbx.2_3'UTR|MLF1_uc003fcc.2_3'UTR|MLF1_uc003fby.2_3'UTR|MLF1_uc010hvx.2_3'UTR	NM_022443	NP_071888
SI	6476	broad.mit.edu	37	3	164716357	164716357	+	Missense_Mutation	SNP	C	G	G			2011-2286:2012-1321-T	g.chr3:164716357C>G	uc003fei.2	-	38	4573	c.4511G>C	c.(4510-4512)CGA>CCA	p.R1504P		NM_001041	NP_001032
GABRA4	2557	broad.mit.edu	37	4	46995856	46995856	+	5'Flank	SNP	G	T	T			2011-2286:2012-1321-T	g.chr4:46995856G>T	uc003gxg.2	-							NM_000809	NP_000800
FAT4	79633	broad.mit.edu	37	4	126237241	126237241	+	5'Flank	SNP	A	G	G	rs7677005	by1000genomes	2011-2286:2012-1321-T	g.chr4:126237241A>G	uc003ifj.3	+							NM_024582	NP_078858
CEP72	55722	broad.mit.edu	37	5	649656	649656	+	Intron	SNP	G	T	T			2011-2286:2012-1321-T	g.chr5:649656G>T	uc003jbf.2	+							NM_018140	NP_060610
ADAMTS16	170690	broad.mit.edu	37	5	5305479	5305479	+	Intron	SNP	T	C	C	rs112989316		2011-2286:2012-1321-T	g.chr5:5305479T>C	uc003jdl.2	+							NM_139056	NP_620687
APC	324	broad.mit.edu	37	5	112170916	112170916	+	Intron	SNP	A	C	C	rs17164137	by1000genomes	2011-2286:2012-1321-T	g.chr5:112170916A>C	uc010jby.2	+						APC_uc011cvt.1_Intron|APC_uc003kpz.3_Intron|APC_uc003kpy.3_Intron|APC_uc010jbz.2_Intron|APC_uc010jca.2_Intron	NM_001127511	NP_001120983
PCDHA6	56142	broad.mit.edu	37	5	140208406	140208406	+	Missense_Mutation	SNP	C	A	A			2011-2286:2012-1321-T	g.chr5:140208406C>A	uc003lho.2	+	1	757	c.730C>A	c.(730-732)CAG>AAG	p.Q244K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.Q244K|PCDHA6_uc011dab.1_Missense_Mutation_p.Q244K	NM_018909	NP_061732
EBF1	1879	broad.mit.edu	37	5	158204538	158204538	+	Missense_Mutation	SNP	G	T	T			2011-2286:2012-1321-T	g.chr5:158204538G>T	uc010jip.2	-	10	1221	c.919C>A	c.(919-921)CCT>ACT	p.P307T	EBF1_uc011ddw.1_Missense_Mutation_p.P175T|EBF1_uc011ddx.1_Missense_Mutation_p.P308T|EBF1_uc003lxl.3_Missense_Mutation_p.P276T	NM_024007	NP_076870
HLA-G	3135	broad.mit.edu	37	6	29796115	29796115	+	Intron	SNP	A	C	C	rs112886424		2011-2286:2012-1321-T	g.chr6:29796115A>C	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29909071	29909071	+	Intron	SNP	G	A	A	rs112279698		2011-2286:2012-1321-T	g.chr6:29909071G>A	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
TAP1	6890	broad.mit.edu	37	6	32816054	32816054	+	Intron	SNP	G	A	A	rs735883	by1000genomes	2011-2286:2012-1321-T	g.chr6:32816054G>A	uc003ocg.2	-						TAP1_uc011dqi.1_Intron	NM_000593	NP_000584
SYNE1	23345	broad.mit.edu	37	6	152563540	152563540	+	Silent	SNP	G	A	A			2011-2286:2012-1321-T	g.chr6:152563540G>A	uc010kiw.2	-	107	20330	c.19728C>T	c.(19726-19728)TCC>TCT	p.S6576S	SYNE1_uc010kiv.2_Silent_p.S1100S|SYNE1_uc003qos.3_Silent_p.S1100S|SYNE1_uc003qot.3_Silent_p.S6505S|SYNE1_uc003qou.3_Silent_p.S6576S	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152730128	152730128	+	Intron	SNP	A	G	G			2011-2286:2012-1321-T	g.chr6:152730128A>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169014387	169014387	+	Intron	SNP	A	C	C			2011-2286:2012-1321-T	g.chr6:169014387A>C	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169015419	169015419	+	Intron	SNP	A	G	G			2011-2286:2012-1321-T	g.chr6:169015419A>G	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
TBP	6908	broad.mit.edu	37	6	170871142	170871142	+	Silent	SNP	G	A	A			2011-2286:2012-1321-T	g.chr6:170871142G>A	uc003qxt.2	+	3	550	c.318G>A	c.(316-318)ACG>ACA	p.T106T	TBP_uc003qxu.2_Silent_p.T106T|TBP_uc011ehf.1_Silent_p.T86T|TBP_uc011ehg.1_Silent_p.T106T	NM_003194	NP_003185
PRKAR1B	5575	broad.mit.edu	37	7	594245	594245	+	Intron	SNP	C	T	T			2011-2286:2012-1321-T	g.chr7:594245C>T	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron	NM_002735	NP_002726
C7orf50	84310	broad.mit.edu	37	7	1056248	1056248	+	Intron	SNP	C	T	T	rs115508233	by1000genomes	2011-2286:2012-1321-T	g.chr7:1056248C>T	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
THSD7A	221981	broad.mit.edu	37	7	11630190	11630190	+	Missense_Mutation	SNP	G	T	T			2011-2286:2012-1321-T	g.chr7:11630190G>T	uc003ssf.3	-	4	1602	c.1350C>A	c.(1348-1350)AAC>AAA	p.N450K		NM_015204	NP_056019
THSD7A	221981	broad.mit.edu	37	7	11675807	11675807	+	Silent	SNP	C	T	T			2011-2286:2012-1321-T	g.chr7:11675807C>T	uc003ssf.3	-	2	1224	c.972G>A	c.(970-972)CAG>CAA	p.Q324Q		NM_015204	NP_056019
BBS9	27241	broad.mit.edu	37	7	33168887	33168887	+	5'Flank	SNP	T	G	G	rs10259915	by1000genomes	2011-2286:2012-1321-T	g.chr7:33168887T>G	uc003tdn.1	+						BBS9_uc003tdo.1_5'Flank|BBS9_uc003tdp.1_5'Flank|BBS9_uc003tdq.1_5'Flank|BBS9_uc010kwn.1_5'Flank	NM_198428	NP_940820
ZNF804B	219578	broad.mit.edu	37	7	88963830	88963830	+	Nonsense_Mutation	SNP	A	T	T			2011-2286:2012-1321-T	g.chr7:88963830A>T	uc011khi.1	+	4	2072	c.1534A>T	c.(1534-1536)AGA>TGA	p.R512*		NM_181646	NP_857597
RELN	5649	broad.mit.edu	37	7	103143514	103143514	+	Missense_Mutation	SNP	G	T	T			2011-2286:2012-1321-T	g.chr7:103143514G>T	uc003vca.2	-	52	8598	c.8438C>A	c.(8437-8439)ACT>AAT	p.T2813N	RELN_uc010liz.2_Missense_Mutation_p.T2813N	NM_005045	NP_005036
ZFHX4	79776	broad.mit.edu	37	8	77619967	77619967	+	Missense_Mutation	SNP	G	A	A			2011-2286:2012-1321-T	g.chr8:77619967G>A	uc003yav.2	+	3	3086	c.2699G>A	c.(2698-2700)AGT>AAT	p.S900N	ZFHX4_uc003yat.1_Missense_Mutation_p.S900N|ZFHX4_uc003yau.1_Missense_Mutation_p.S926N|ZFHX4_uc003yaw.1_Missense_Mutation_p.S900N	NM_024721	NP_078997
CSMD3	114788	broad.mit.edu	37	8	113317230	113317231	+	Intron	DNP	TC	AA	AA			2011-2286:2012-1321-T	g.chr8:113317230_113317231TC>AA	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	114185985	114185985	+	Silent	SNP	T	A	A			2011-2286:2012-1321-T	g.chr8:114185985T>A	uc003ynu.2	-	4	834	c.675A>T	c.(673-675)ACA>ACT	p.T225T	CSMD3_uc003ynt.2_Silent_p.T185T|CSMD3_uc011lhx.1_Silent_p.T225T|CSMD3_uc010mcx.1_Silent_p.T225T	NM_198123	NP_937756
TRAPPC9	83696	broad.mit.edu	37	8	140816436	140816436	+	Intron	SNP	A	T	T			2011-2286:2012-1321-T	g.chr8:140816436A>T	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron	NM_001160372	NP_001153844
HEPH	9843	broad.mit.edu	37	X	65408407	65408407	+	Intron	SNP	A	T	T			2011-2286:2012-1321-T	g.chrX:65408407A>T	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
HEPH	9843	broad.mit.edu	37	X	65413557	65413557	+	Intron	SNP	C	T	T			2011-2286:2012-1321-T	g.chrX:65413557C>T	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
GPR174	84636	broad.mit.edu	37	X	78427092	78427092	+	Silent	SNP	T	A	A			2011-2286:2012-1321-T	g.chrX:78427092T>A	uc004edg.1	+	1	624	c.588T>A	c.(586-588)ACT>ACA	p.T196T		NM_032553	NP_115942
MACF1	23499	broad.mit.edu	37	1	39766055	39766055	+	Intron	SNP	C	T	T	rs2275186	by1000genomes	2011-2288:2012-1331-T	g.chr1:39766055C>T	uc010ois.1	+						MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc009vvq.1_Intron|MACF1_uc001cdb.1_Intron	NM_012090	NP_036222
WDR63	126820	broad.mit.edu	37	1	85595645	85595645	+	Intron	SNP	C	T	T	rs1020770	by1000genomes	2011-2288:2012-1331-T	g.chr1:85595645C>T	uc001dkt.2	+						WDR63_uc009wcl.2_Intron	NM_145172	NP_660155
SPAG17	200162	broad.mit.edu	37	1	118530840	118530840	+	Intron	SNP	A	T	T			2011-2288:2012-1331-T	g.chr1:118530840A>T	uc001ehk.2	-							NM_206996	NP_996879
LRRTM3	347731	broad.mit.edu	37	10	68686753	68686753	+	Missense_Mutation	SNP	C	G	G			2011-2288:2012-1331-T	g.chr10:68686753C>G	uc001jmz.1	+	2	629	c.79C>G	c.(79-81)CTT>GTT	p.L27V	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.L27V	NM_178011	NP_821079
LSP1	4046	broad.mit.edu	37	11	1895084	1895084	+	Intron	SNP	G	C	C			2011-2288:2012-1331-T	g.chr11:1895084G>C	uc001lui.2	+						LSP1_uc001luj.2_Intron|LSP1_uc001luk.2_Intron|LSP1_uc001lul.2_Intron|LSP1_uc001lum.2_Intron	NM_002339	NP_002330
C1QTNF8	390664	broad.mit.edu	37	16	1143083	1143083	+	Intron	SNP	C	A	A			2011-2288:2012-1331-T	g.chr16:1143083C>A	uc010uuw.1	-							NM_207419	NP_997302
RPL3L	6123	broad.mit.edu	37	16	2000089	2000089	+	Intron	SNP	T	G	G			2011-2288:2012-1331-T	g.chr16:2000089T>G	uc002cnh.2	-							NM_005061	NP_005052
FANCA	2175	broad.mit.edu	37	16	89837951	89837951	+	Intron	SNP	T	C	C	rs11076622	byFrequency;by1000genomes	2011-2288:2012-1331-T	g.chr16:89837951T>C	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
STAT3	6774	broad.mit.edu	37	17	40489939	40489939	+	Intron	SNP	T	G	G	rs62075766	by1000genomes	2011-2288:2012-1331-T	g.chr17:40489939T>G	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
ABCA6	23460	broad.mit.edu	37	17	67081732	67081732	+	Intron	SNP	C	T	T	rs2302133	by1000genomes	2011-2288:2012-1331-T	g.chr17:67081732C>T	uc002jhw.1	-							NM_080284	NP_525023
SLC39A11	201266	broad.mit.edu	37	17	70944416	70944416	+	Intron	SNP	T	C	C			2011-2288:2012-1331-T	g.chr17:70944416T>C	uc002jjb.2	-						SLC39A11_uc002jja.2_Intron|SLC39A11_uc002jjc.1_Intron	NM_001159770	NP_001153242
BCL2	596	broad.mit.edu	37	18	60865848	60865848	+	Intron	SNP	C	G	G			2011-2288:2012-1331-T	g.chr18:60865848C>G	uc002lit.1	-						BCL2_uc002liu.1_Intron	NM_000633	NP_000624
MBP	4155	broad.mit.edu	37	18	74749252	74749252	+	Intron	SNP	G	A	A	rs116665438	by1000genomes	2011-2288:2012-1331-T	g.chr18:74749252G>A	uc010xfd.1	-						MBP_uc002lmr.2_Intron	NM_001025101	NP_001020272
RMND5A	64795	broad.mit.edu	37	2	87623376	87623376	+	Intron	SNP	G	A	A			2011-2288:2012-1331-T	g.chr2:87623376G>A	uc002srs.3	+								
YTHDC1	91746	broad.mit.edu	37	4	69189874	69189874	+	Missense_Mutation	SNP	T	C	C			2011-2288:2012-1331-T	g.chr4:69189874T>C	uc003hdx.2	-	10	1770	c.1417A>G	c.(1417-1419)ATC>GTC	p.I473V	YTHDC1_uc003hdy.2_Missense_Mutation_p.I455V	NM_001031732	NP_001026902
SLC10A7	84068	broad.mit.edu	37	4	147207853	147207853	+	Intron	SNP	T	A	A	rs75299446	by1000genomes	2011-2288:2012-1331-T	g.chr4:147207853T>A	uc010ioz.2	-						SLC10A7_uc003ikr.2_Intron|SLC10A7_uc010ipa.2_Intron|SLC10A7_uc003iks.2_Intron	NM_001029998	NP_001025169
APC	324	broad.mit.edu	37	5	112173665	112173665	+	Nonsense_Mutation	SNP	A	T	T			2011-2288:2012-1331-T	g.chr5:112173665A>T	uc010jby.2	+	16	2754	c.2374A>T	c.(2374-2376)AAG>TAG	p.K792*	APC_uc011cvt.1_Nonsense_Mutation_p.K774*|APC_uc003kpz.3_Nonsense_Mutation_p.K792*|APC_uc003kpy.3_Nonsense_Mutation_p.K792*|APC_uc010jbz.2_Nonsense_Mutation_p.K509*|APC_uc010jca.2_Nonsense_Mutation_p.K92*	NM_001127511	NP_001120983
NSD1	64324	broad.mit.edu	37	5	176720766	176720766	+	Intron	SNP	A	G	G	rs6872201	by1000genomes	2011-2288:2012-1331-T	g.chr5:176720766A>G	uc003mfr.3	+						NSD1_uc003mft.3_Intron|NSD1_uc011dfx.1_Intron	NM_022455	NP_071900
HLA-G	3135	broad.mit.edu	37	6	29910189	29910189	+	Intron	SNP	A	T	T	rs112660675		2011-2288:2012-1331-T	g.chr6:29910189A>T	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
SLCO5A1	81796	broad.mit.edu	37	8	70585247	70585247	+	Missense_Mutation	SNP	C	T	T			2011-2288:2012-1331-T	g.chr8:70585247C>T	uc003xyl.2	-	10	3111	c.2404G>A	c.(2404-2406)GGA>AGA	p.G802R	SLCO5A1_uc010lzb.2_Missense_Mutation_p.G747R|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220
EXD3	54932	broad.mit.edu	37	9	140288955	140288955	+	Intron	SNP	C	G	G			2011-2288:2012-1331-T	g.chr9:140288955C>G	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncg.1_Intron|EXD3_uc004cmr.2_Intron|EXD3_uc004cms.2_Intron|EXD3_uc004cmt.3_Intron	NM_017820	NP_060290
FAAH2	158584	broad.mit.edu	37	X	57318907	57318907	+	Intron	SNP	T	A	A	rs4030473	by1000genomes	2011-2288:2012-1331-T	g.chrX:57318907T>A	uc004dvc.2	+							NM_174912	NP_777572
GPR123	84435	broad.mit.edu	37	10	134893252	134893252	+	Intron	SNP	C	T	T			2011-2289:2012-1332-T	g.chr10:134893252C>T	uc001llw.2	+								
GPR133	283383	broad.mit.edu	37	12	131613783	131613783	+	Intron	SNP	G	C	C			2011-2289:2012-1332-T	g.chr12:131613783G>C	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc009zyp.2_Intron	NM_198827	NP_942122
NRXN3	9369	broad.mit.edu	37	14	80312067	80312067	+	Intron	SNP	G	C	C			2011-2289:2012-1332-T	g.chr14:80312067G>C	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_Intron|NRXN3_uc001xuq.2_Intron|NRXN3_uc010asw.2_Intron|NRXN3_uc001xur.3_Intron	NM_004796	NP_004787
HUWE1	10075	broad.mit.edu	37	X	53652117	53652117	+	Splice_Site	SNP	C	A	A			2011-2289:2012-1332-T	g.chrX:53652117C>A	uc004dsp.2	-	18	1993	c.1591_splice	c.e18+1	p.V531_splice		NM_031407	NP_113584
MEGF6	1953	broad.mit.edu	37	1	3493264	3493264	+	Intron	SNP	A	T	T	rs2821056	by1000genomes	2011-2290:2012-1322-T	g.chr1:3493264A>T	uc001akl.2	-							NM_001409	NP_001400
CDKN2C	1031	broad.mit.edu	37	1	51435650	51435650	+	Intron	SNP	C	T	T	rs3176453	by1000genomes	2011-2290:2012-1322-T	g.chr1:51435650C>T	uc001csf.2	+						CDKN2C_uc001csg.2_5'UTR	NM_001262	NP_001253
HIST2H2BE	8349	broad.mit.edu	37	1	149856908	149856908	+	3'UTR	SNP	A	C	C	rs142503632	by1000genomes	2011-2290:2012-1322-T	g.chr1:149856908A>C	uc001etc.2	-	1					HIST2H2AC_uc001etd.2_5'Flank	NM_003528	NP_003519
PTEN	5728	broad.mit.edu	37	10	89711893	89711893	+	Nonsense_Mutation	SNP	C	T	T			2011-2290:2012-1322-T	g.chr10:89711893C>T	uc001kfb.2	+	7	1542	c.511C>T	c.(511-513)CAG>TAG	p.Q171*		NM_000314	NP_000305
LRRC27	80313	broad.mit.edu	37	10	134172083	134172083	+	Intron	SNP	C	T	T			2011-2290:2012-1322-T	g.chr10:134172083C>T	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
PTPN6	5777	broad.mit.edu	37	12	7069025	7069025	+	Intron	SNP	G	A	A	rs73262896	by1000genomes	2011-2290:2012-1322-T	g.chr12:7069025G>A	uc001qsb.2	+						PTPN6_uc001qsa.1_Intron|PTPN6_uc010sfr.1_Intron|PTPN6_uc009zfl.1_Intron|PTPN6_uc010sfs.1_Intron	NM_002831	NP_002822
PIK3C2G	5288	broad.mit.edu	37	12	18473881	18473881	+	Intron	SNP	T	G	G	rs34734874	by1000genomes	2011-2290:2012-1322-T	g.chr12:18473881T>G	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron|PIK3C2G_uc010sib.1_Intron|PIK3C2G_uc010sic.1_Intron	NM_004570	NP_004561
BRCA2	675	broad.mit.edu	37	13	32944741	32944741	+	Intron	SNP	C	T	T	rs11571744	by1000genomes	2011-2290:2012-1322-T	g.chr13:32944741C>T	uc001uub.1	+							NM_000059	NP_000050
C13orf35	400165	broad.mit.edu	37	13	113299762	113299762	+	5'Flank	SNP	A	G	G			2011-2290:2012-1322-T	g.chr13:113299762A>G	uc001vsh.1	+							NM_207440	NP_997323
TFDP1	7027	broad.mit.edu	37	13	114279860	114279860	+	Intron	SNP	A	C	C			2011-2290:2012-1322-T	g.chr13:114279860A>C	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
RASA3	22821	broad.mit.edu	37	13	114788856	114788856	+	Intron	SNP	G	A	A	rs34803962	by1000genomes	2011-2290:2012-1322-T	g.chr13:114788856G>A	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron|RASA3_uc010aha.1_Intron	NM_007368	NP_031394
NKX2-1	7080	broad.mit.edu	37	14	36989182	36989182	+	5'Flank	SNP	C	T	T			2011-2290:2012-1322-T	g.chr14:36989182C>T	uc001wtt.2	-						SFTA3_uc001wts.2_5'Flank|NKX2-1_uc001wtu.2_Intron|NKX2-1_uc001wtv.2_Intron|uc001wtw.1_Intron	NM_003317	NP_003308
SYNE2	23224	broad.mit.edu	37	14	64588957	64588957	+	Intron	SNP	A	C	C	rs10148304	by1000genomes	2011-2290:2012-1322-T	g.chr14:64588957A>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
NECAB2	54550	broad.mit.edu	37	16	84008604	84008604	+	Intron	SNP	T	G	G			2011-2290:2012-1322-T	g.chr16:84008604T>G	uc002fhd.2	+						NECAB2_uc002fhe.2_Intron	NM_019065	NP_061938
FANCA	2175	broad.mit.edu	37	16	89849538	89849538	+	Intron	SNP	C	T	T			2011-2290:2012-1322-T	g.chr16:89849538C>T	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
TP53	7157	broad.mit.edu	37	17	7577610	7577610	+	Splice_Site	SNP	T	C	C			2011-2290:2012-1322-T	g.chr17:7577610T>C	uc002gim.2	-	7	867	c.673_splice	c.e7-1	p.V225_splice	TP53_uc002gig.1_Splice_Site_p.V225_splice|TP53_uc002gih.2_Splice_Site_p.V225_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Splice_Site_p.V93_splice|TP53_uc010cng.1_Splice_Site_p.V93_splice|TP53_uc002gii.1_Splice_Site_p.V93_splice|TP53_uc010cnh.1_Splice_Site_p.V225_splice|TP53_uc010cni.1_Splice_Site_p.V225_splice|TP53_uc002gij.2_Splice_Site_p.V225_splice|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron	NM_001126112	NP_001119584
MED1	5469	broad.mit.edu	37	17	37564317	37564317	+	Missense_Mutation	SNP	C	G	G	rs149373125	byFrequency	2011-2290:2012-1322-T	g.chr17:37564317C>G	uc002hrv.3	-	17	4369	c.4157G>C	c.(4156-4158)AGC>ACC	p.S1386T	MED1_uc010wee.1_Missense_Mutation_p.S1214T|MED1_uc002hru.2_Intron	NM_004774	NP_004765
BRCA1	672	broad.mit.edu	37	17	41276493	41276493	+	Intron	SNP	G	A	A	rs141625477	by1000genomes	2011-2290:2012-1322-T	g.chr17:41276493G>A	uc002icq.2	-						BRCA1_uc010whp.1_Intron|NBR2_uc002idf.2_5'Flank|NBR2_uc010czb.1_5'Flank|NBR2_uc002idg.2_5'Flank|NBR2_uc002idh.2_5'Flank|BRCA1_uc010whl.1_5'Flank|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_5'Flank|BRCA1_uc010cyy.1_Intron|BRCA1_uc010whs.1_Intron|BRCA1_uc010cyz.2_Intron|BRCA1_uc010cza.2_Intron|BRCA1_uc010wht.1_Intron	NM_007294	NP_009225
C18orf22	79863	broad.mit.edu	37	18	77833629	77833629	+	Intron	SNP	G	A	A			2011-2290:2012-1322-T	g.chr18:77833629G>A	uc010dri.1	+						uc002lnu.2_Intron		
SPPL2B	56928	broad.mit.edu	37	19	2325517	2325517	+	Intron	SNP	A	G	G	rs73520540	by1000genomes	2011-2290:2012-1322-T	g.chr19:2325517A>G	uc010dsw.1	+						LSM7_uc002lvp.3_Intron		
CRX	1406	broad.mit.edu	37	19	48326378	48326378	+	Intron	SNP	C	T	T	rs8112377	by1000genomes	2011-2290:2012-1322-T	g.chr19:48326378C>T	uc002phq.3	+						CRX_uc010elm.1_Intron	NM_000554	NP_000545
ABCA12	26154	broad.mit.edu	37	2	215928972	215928972	+	Intron	SNP	G	C	C	rs1523721	by1000genomes	2011-2290:2012-1322-T	g.chr2:215928972G>C	uc002vew.2	-						ABCA12_uc010zjn.1_Intron	NM_173076	NP_775099
PAK7	57144	broad.mit.edu	37	20	9524855	9524855	+	Intron	SNP	T	C	C	rs6056682	by1000genomes	2011-2290:2012-1322-T	g.chr20:9524855T>C	uc002wnl.2	-						PAK7_uc002wnk.2_Intron|PAK7_uc002wnj.2_Intron|PAK7_uc010gby.1_Intron	NM_020341	NP_065074
FHIT	2272	broad.mit.edu	37	3	60852495	60852495	+	Intron	SNP	A	T	T	rs72886300	by1000genomes	2011-2290:2012-1322-T	g.chr3:60852495A>T	uc003dkx.3	-						FHIT_uc003dky.2_Intron|FHIT_uc010hnn.1_Intron	NM_002012	NP_002003
DGKG	1608	broad.mit.edu	37	3	186024669	186024669	+	Intron	SNP	T	C	C	rs76296241	by1000genomes	2011-2290:2012-1322-T	g.chr3:186024669T>C	uc003fqa.2	-						DGKG_uc003fqb.2_Intron|DGKG_uc003fqc.2_Intron|DGKG_uc011brx.1_Intron	NM_001346	NP_001337
TFRC	7037	broad.mit.edu	37	3	195791168	195791169	+	Intron	DNP	TT	AA	AA			2011-2290:2012-1322-T	g.chr3:195791168_195791169TT>AA	uc003fvz.3	-						TFRC_uc003fwa.3_Intron|TFRC_uc010hzy.2_Intron|TFRC_uc011btr.1_Intron	NM_003234	NP_003225
CDH10	1008	broad.mit.edu	37	5	24509570	24509570	+	Intron	SNP	G	A	A			2011-2290:2012-1322-T	g.chr5:24509570G>A	uc003jgr.1	-						CDH10_uc011cnu.1_Intron	NM_006727	NP_006718
RIOK2	55781	broad.mit.edu	37	5	96514485	96514485	+	Intron	SNP	T	C	C			2011-2290:2012-1322-T	g.chr5:96514485T>C	uc003kmz.2	-						RIOK2_uc003kna.3_Intron	NM_018343	NP_060813
HIST1H4E	8367	broad.mit.edu	37	6	26204669	26204669	+	5'Flank	SNP	G	A	A	rs73736560	by1000genomes	2011-2290:2012-1322-T	g.chr6:26204669G>A	uc003ngy.2	+							NM_003545	NP_003536
HLA-F	3134	broad.mit.edu	37	6	29691090	29691090	+	5'Flank	SNP	T	A	A	rs1362125	by1000genomes	2011-2290:2012-1322-T	g.chr6:29691090T>A	uc010jrl.2	+						HLA-F_uc003nnm.3_5'Flank|HLA-F_uc003nno.3_5'Flank|HLA-F_uc011dlx.1_5'Flank|HLA-F_uc011dly.1_5'Flank	NM_018950	NP_061823
HLA-F	3134	broad.mit.edu	37	6	29692622	29692622	+	Intron	SNP	C	A	A	rs79329665		2011-2290:2012-1322-T	g.chr6:29692622C>A	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-F	3134	broad.mit.edu	37	6	29692634	29692634	+	Intron	SNP	T	G	G	rs1736925	by1000genomes	2011-2290:2012-1322-T	g.chr6:29692634T>G	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-G	3135	broad.mit.edu	37	6	29976499	29976499	+	Intron	SNP	C	G	G	rs75822147		2011-2290:2012-1322-T	g.chr6:29976499C>G	uc011dmb.1	+						NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_Intron|HLA-J_uc003rtl.3_Intron|HLA-J_uc003nov.3_Intron	NM_002127	NP_002118
TAP1	6890	broad.mit.edu	37	6	32816998	32816998	+	Intron	SNP	T	C	C	rs12527715	by1000genomes	2011-2290:2012-1322-T	g.chr6:32816998T>C	uc003ocg.2	-						TAP1_uc011dqi.1_Intron	NM_000593	NP_000584
TAP1	6890	broad.mit.edu	37	6	32817008	32817008	+	Intron	SNP	C	T	T	rs56318279		2011-2290:2012-1322-T	g.chr6:32817008C>T	uc003ocg.2	-						TAP1_uc011dqi.1_Intron	NM_000593	NP_000584
NUP43	348995	broad.mit.edu	37	6	150067968	150067968	+	5'Flank	SNP	C	A	A	rs9767608	by1000genomes	2011-2290:2012-1322-T	g.chr6:150067968C>A	uc003qmz.2	-						PCMT1_uc003qna.2_5'Flank|PCMT1_uc003qnb.2_5'Flank|PCMT1_uc011eeg.1_5'Flank|PCMT1_uc003qnc.2_5'Flank|PCMT1_uc003qnd.2_5'Flank|PCMT1_uc003qne.2_5'Flank|PCMT1_uc003qnf.2_5'Flank|NUP43_uc011eee.1_5'Flank|NUP43_uc011eef.1_5'Flank	NM_198887	NP_942590
FAM120B	84498	broad.mit.edu	37	6	170703629	170703629	+	Intron	SNP	A	G	G	rs60227559		2011-2290:2012-1322-T	g.chr6:170703629A>G	uc003qxp.2	+						FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824
PRKAR1B	5575	broad.mit.edu	37	7	637880	637880	+	Intron	SNP	C	T	T	rs148552883	by1000genomes	2011-2290:2012-1322-T	g.chr7:637880C>T	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
HEATR2	54919	broad.mit.edu	37	7	795831	795831	+	Intron	SNP	C	T	T			2011-2290:2012-1322-T	g.chr7:795831C>T	uc010krz.1	+						HEATR2_uc003siz.2_Intron	NM_017802	NP_060272
ADCY8	114	broad.mit.edu	37	8	131797568	131797568	+	Intron	SNP	G	A	A	rs12546275	by1000genomes	2011-2290:2012-1322-T	g.chr8:131797568G>A	uc003ytd.3	-						ADCY8_uc010mds.2_Intron	NM_001115	NP_001106
POMT1	10585	broad.mit.edu	37	9	134387539	134387539	+	Intron	SNP	G	A	A	rs59515295	byFrequency;by1000genomes	2011-2290:2012-1322-T	g.chr9:134387539G>A	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
COL5A1	1289	broad.mit.edu	37	9	137639758	137639758	+	Intron	SNP	T	C	C			2011-2290:2012-1322-T	g.chr9:137639758T>C	uc004cfe.2	+							NM_000093	NP_000084
OLFM1	10439	broad.mit.edu	37	9	138010249	138010249	+	Intron	SNP	G	T	T	rs113744581	by1000genomes	2011-2290:2012-1322-T	g.chr9:138010249G>T	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfn.3_Intron	NM_014279	NP_055094
NOTCH1	4851	broad.mit.edu	37	9	139395280	139395280	+	Missense_Mutation	SNP	C	A	A			2011-2290:2012-1322-T	g.chr9:139395280C>A	uc004chz.2	-	31	5658	c.5658G>T	c.(5656-5658)ATG>ATT	p.M1886I		NM_017617	NP_060087
C9orf86	55684	broad.mit.edu	37	9	139712026	139712026	+	Intron	SNP	T	A	A	rs62581428	by1000genomes	2011-2290:2012-1322-T	g.chr9:139712026T>A	uc004cji.1	+						C9orf86_uc004cjm.2_Intron|C9orf86_uc004cjh.2_Intron|C9orf86_uc004cjj.1_Intron|C9orf86_uc004cjk.1_Intron|C9orf86_uc010nbr.1_Intron	NM_024718	NP_078994
CACNA1B	774	broad.mit.edu	37	9	140817749	140817749	+	Intron	SNP	A	G	G	rs34141327	by1000genomes	2011-2290:2012-1322-T	g.chr9:140817749A>G	uc004cog.2	+							NM_000718	NP_000709
ODZ1	10178	broad.mit.edu	37	X	123657279	123657279	+	Missense_Mutation	SNP	G	C	C			2011-2290:2012-1322-T	g.chrX:123657279G>C	uc004euj.2	-	17	3032	c.2968C>G	c.(2968-2970)CCT>GCT	p.P990A	ODZ1_uc011muj.1_Missense_Mutation_p.P989A|ODZ1_uc010nqy.2_Missense_Mutation_p.P990A	NM_014253	NP_055068
NRAP	4892	broad.mit.edu	37	10	115423201	115423201	+	Missense_Mutation	SNP	C	A	A			2011-2292:2012-324-T	g.chr10:115423201C>A	uc001laj.2	-	2	241	c.77G>T	c.(76-78)TGG>TTG	p.W26L	NRAP_uc001lak.2_Missense_Mutation_p.W26L|NRAP_uc001lal.3_Missense_Mutation_p.W26L	NM_198060	NP_932326
SHANK2	22941	broad.mit.edu	37	11	70385675	70385675	+	Intron	SNP	C	A	A			2011-2292:2012-324-T	g.chr11:70385675C>A	uc001oqc.2	-						SHANK2_uc010rqn.1_Intron|SHANK2_uc001opz.2_Intron|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Intron	NM_012309	NP_036441
NUMA1	4926	broad.mit.edu	37	11	71720201	71720201	+	Nonsense_Mutation	SNP	T	A	A			2011-2292:2012-324-T	g.chr11:71720201T>A	uc001orl.1	-	19	5042	c.4870A>T	c.(4870-4872)AAG>TAG	p.K1624*	NUMA1_uc001orj.2_5'Flank|NUMA1_uc009ysw.1_Nonsense_Mutation_p.K1173*|NUMA1_uc001ork.1_Nonsense_Mutation_p.K488*|NUMA1_uc001orm.1_Nonsense_Mutation_p.K1610*|NUMA1_uc001orn.2_Nonsense_Mutation_p.K1187*	NM_006185	NP_006176
LRRK2	120892	broad.mit.edu	37	12	40714767	40714767	+	Intron	SNP	A	T	T			2011-2292:2012-324-T	g.chr12:40714767A>T	uc001rmg.3	+						LRRK2_uc009zjw.2_Intron|LRRK2_uc001rmi.2_Intron	NM_198578	NP_940980
GPC5	2262	broad.mit.edu	37	13	92560492	92560492	+	Intron	SNP	T	C	C			2011-2292:2012-324-T	g.chr13:92560492T>C	uc010tif.1	+							NM_004466	NP_004457
F7	2155	broad.mit.edu	37	13	113761945	113761945	+	Intron	SNP	A	G	G			2011-2292:2012-324-T	g.chr13:113761945A>G	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
RASA3	22821	broad.mit.edu	37	13	114891456	114891456	+	Intron	SNP	C	T	T			2011-2292:2012-324-T	g.chr13:114891456C>T	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
NRXN3	9369	broad.mit.edu	37	14	79723851	79723851	+	Intron	SNP	G	A	A			2011-2292:2012-324-T	g.chr14:79723851G>A	uc001xun.2	+						NRXN3_uc001xum.1_Intron	NM_004796	NP_004787
NRXN3	9369	broad.mit.edu	37	14	80312050	80312050	+	Intron	SNP	G	A	A			2011-2292:2012-324-T	g.chr14:80312050G>A	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_Intron|NRXN3_uc001xuq.2_Intron|NRXN3_uc010asw.2_Intron|NRXN3_uc001xur.3_Intron	NM_004796	NP_004787
TC2N	123036	broad.mit.edu	37	14	92280090	92280090	+	Silent	SNP	A	G	G			2011-2292:2012-324-T	g.chr14:92280090A>G	uc001xzu.3	-	2	215	c.24T>C	c.(22-24)AGT>AGC	p.S8S	TC2N_uc001xzt.3_Silent_p.S8S|TC2N_uc010auc.2_Silent_p.S8S|TC2N_uc001xzv.3_Silent_p.S8S	NM_001128595	NP_001122067
UBE3A	7337	broad.mit.edu	37	15	25651081	25651081	+	Intron	SNP	G	T	T			2011-2292:2012-324-T	g.chr15:25651081G>T	uc001zaq.2	-						UBE3A_uc001zar.2_Intron|UBE3A_uc001zas.2_Intron|UBE3A_uc001zat.2_Intron|UBE3A_uc001zau.1_Intron	NM_000462	NP_000453
LMF1	64788	broad.mit.edu	37	16	909218	909218	+	Intron	SNP	G	A	A			2011-2292:2012-324-T	g.chr16:909218G>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000657	1000657	+	Intron	SNP	C	T	T			2011-2292:2012-324-T	g.chr16:1000657C>T	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
TP53	7157	broad.mit.edu	37	17	7577518	7577518	+	Missense_Mutation	SNP	T	A	A			2011-2292:2012-324-T	g.chr17:7577518T>A	uc002gim.2	-	7	957	c.763A>T	c.(763-765)ATC>TTC	p.I255F	TP53_uc002gig.1_Missense_Mutation_p.I255F|TP53_uc002gih.2_Missense_Mutation_p.I255F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.I123F|TP53_uc010cng.1_Missense_Mutation_p.I123F|TP53_uc002gii.1_Missense_Mutation_p.I123F|TP53_uc010cnh.1_Missense_Mutation_p.I255F|TP53_uc010cni.1_Missense_Mutation_p.I255F|TP53_uc002gij.2_Missense_Mutation_p.I255F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.I162F|TP53_uc002gio.2_Missense_Mutation_p.I123F	NM_001126112	NP_001119584
TBC1D3	729873	broad.mit.edu	37	17	36349314	36349314	+	Intron	SNP	G	A	A	rs62072924		2011-2292:2012-324-T	g.chr17:36349314G>A	uc002hpr.2	-						TBC1D3_uc010wdl.1_5'Flank|TBC1D3_uc002hox.2_5'Flank|TBC1D3_uc010wdm.1_5'Flank|TBC1D3_uc002hpq.2_5'Flank|TBC1D3_uc010cvj.1_5'Flank|TBC1D3_uc010cvk.2_Intron|TBC1D3_uc002hpp.2_5'Flank|TBC1D3_uc010wdn.1_Intron	NM_001123391	NP_001116863
STAT3	6774	broad.mit.edu	37	17	40490479	40490479	+	Intron	SNP	G	T	T			2011-2292:2012-324-T	g.chr17:40490479G>T	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
RAD51C	5889	broad.mit.edu	37	17	56780838	56780838	+	Intron	SNP	A	G	G			2011-2292:2012-324-T	g.chr17:56780838A>G	uc002iwu.2	+						RAD51C_uc010woa.1_Intron|RAD51C_uc010ddc.2_Intron|RAD51C_uc002iwv.2_Intron|RAD51C_uc002iww.2_Intron	NM_058216	NP_478123
ABCA6	23460	broad.mit.edu	37	17	67138138	67138138	+	5'Flank	SNP	C	T	T	rs3744489	by1000genomes	2011-2292:2012-324-T	g.chr17:67138138C>T	uc002jhw.1	-						ABCA6_uc002jhy.2_5'Flank	NM_080284	NP_525023
ZNF345	25850	broad.mit.edu	37	19	37341847	37341847	+	Intron	SNP	G	A	A			2011-2292:2012-324-T	g.chr19:37341847G>A	uc002oex.2	+						ZNF345_uc002oey.3_5'UTR|ZNF345_uc002oez.2_RNA	NM_003419	NP_003410
RMND5A	64795	broad.mit.edu	37	2	87644175	87644175	+	Intron	SNP	C	G	G			2011-2292:2012-324-T	g.chr2:87644175C>G	uc002srs.3	+								
BAGE2	85319	broad.mit.edu	37	21	11058310	11058310	+	Missense_Mutation	SNP	C	A	A			2011-2292:2012-324-T	g.chr21:11058310C>A	uc002yit.1	-	3	338	c.130G>T	c.(130-132)GTA>TTA	p.V44L	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288
PTTG1IP	754	broad.mit.edu	37	21	46283065	46283065	+	Intron	SNP	C	G	G			2011-2292:2012-324-T	g.chr21:46283065C>G	uc002zgb.1	-						PTTG1IP_uc011afj.1_Intron|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330
XRCC6	2547	broad.mit.edu	37	22	42046748	42046748	+	Missense_Mutation	SNP	A	G	G			2011-2292:2012-324-T	g.chr22:42046748A>G	uc003bao.1	+	8	1052	c.982A>G	c.(982-984)ATA>GTA	p.I328V	XRCC6_uc003bap.1_Missense_Mutation_p.I287V|XRCC6_uc011apc.1_Missense_Mutation_p.I278V|XRCC6_uc003baq.1_Missense_Mutation_p.I328V|XRCC6_uc003bar.1_Missense_Mutation_p.I328V|XRCC6_uc003bas.1_Missense_Mutation_p.I278V	NM_001469	NP_001460
DPPA4	55211	broad.mit.edu	37	3	109047696	109047696	+	Intron	SNP	G	A	A			2011-2292:2012-324-T	g.chr3:109047696G>A	uc003dxq.3	-						DPPA4_uc011bho.1_Intron	NM_018189	NP_060659
C4orf22	255119	broad.mit.edu	37	4	81850602	81850602	+	Intron	SNP	C	G	G			2011-2292:2012-324-T	g.chr4:81850602C>G	uc003hmf.2	+						C4orf22_uc010ijp.2_Intron	NM_152770	NP_689983
ADAMTS12	81792	broad.mit.edu	37	5	33881323	33881323	+	Silent	SNP	C	T	T			2011-2292:2012-324-T	g.chr5:33881323C>T	uc003jia.1	-	2	553	c.390G>A	c.(388-390)AAG>AAA	p.K130K	ADAMTS12_uc010iuq.1_Silent_p.K130K|ADAMTS12_uc003jib.1_Silent_p.K130K	NM_030955	NP_112217
IL6ST	3572	broad.mit.edu	37	5	55246101	55246101	+	Intron	SNP	A	C	C			2011-2292:2012-324-T	g.chr5:55246101A>C	uc003jqq.2	-						IL6ST_uc010iwb.2_Intron|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Intron|IL6ST_uc003jqr.2_Intron|IL6ST_uc010iwe.1_Intron	NM_002184	NP_002175
EPHA7	2045	broad.mit.edu	37	6	93954972	93954972	+	Intron	SNP	T	C	C	rs72039284		2011-2292:2012-324-T	g.chr6:93954972T>C	uc003poe.2	-						EPHA7_uc003pof.2_Intron|EPHA7_uc011eac.1_Intron	NM_004440	NP_004431
COQ3	51805	broad.mit.edu	37	6	99817598	99817598	+	Missense_Mutation	SNP	C	T	T			2011-2292:2012-324-T	g.chr6:99817598C>T	uc003ppk.2	-	7	1015	c.988G>A	c.(988-990)GCT>ACT	p.A330T		NM_017421	NP_059117
SYNE1	23345	broad.mit.edu	37	6	152501316	152501316	+	Missense_Mutation	SNP	C	G	G			2011-2292:2012-324-T	g.chr6:152501316C>G	uc010kiw.2	-	129	24017	c.23415G>C	c.(23413-23415)CAG>CAC	p.Q7805H	SYNE1_uc010kiv.2_Missense_Mutation_p.Q2329H|SYNE1_uc003qos.3_Missense_Mutation_p.Q2329H|SYNE1_uc003qot.3_Missense_Mutation_p.Q7734H|SYNE1_uc003qou.3_Missense_Mutation_p.Q7805H|SYNE1_uc003qop.3_5'Flank|SYNE1_uc011eez.1_Missense_Mutation_p.Q7H|SYNE1_uc003qoq.3_Missense_Mutation_p.Q7H|SYNE1_uc003qor.3_Missense_Mutation_p.Q705H	NM_182961	NP_892006
MLL3	58508	broad.mit.edu	37	7	151970939	151970939	+	Missense_Mutation	SNP	C	A	A			2011-2292:2012-324-T	g.chr7:151970939C>A	uc003wla.2	-	7	1082	c.863G>T	c.(862-864)TGT>TTT	p.C288F		NM_170606	NP_733751
WRN	7486	broad.mit.edu	37	8	30954258	30954258	+	Intron	SNP	C	T	T			2011-2292:2012-324-T	g.chr8:30954258C>T	uc003xio.3	+						WRN_uc010lvk.2_Intron	NM_000553	NP_000544
UBR5	51366	broad.mit.edu	37	8	103307065	103307065	+	Intron	SNP	C	G	G			2011-2292:2012-324-T	g.chr8:103307065C>G	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
ADCK5	203054	broad.mit.edu	37	8	145596577	145596577	+	5'Flank	SNP	C	T	T			2011-2292:2012-324-T	g.chr8:145596577C>T	uc003zch.2	+						ADCK5_uc003zcg.2_5'Flank	NM_174922	NP_777582
NOTCH1	4851	broad.mit.edu	37	9	139417370	139417370	+	Nonsense_Mutation	SNP	G	T	T			2011-2292:2012-324-T	g.chr9:139417370G>T	uc004chz.2	-	4	674	c.674C>A	c.(673-675)TCG>TAG	p.S225*		NM_017617	NP_060087
KIF1B	23095	broad.mit.edu	37	1	10328338	10328338	+	Intron	SNP	C	T	T	rs1339458	by1000genomes	2011-2293:2012-1333-T	g.chr1:10328338C>T	uc001aqx.3	+						KIF1B_uc001aqv.3_Intron|KIF1B_uc001aqw.3_Intron|KIF1B_uc001aqy.2_Intron|KIF1B_uc001aqz.2_Intron|KIF1B_uc001ara.2_Intron|KIF1B_uc001arb.2_Intron|KIF1B_uc009vmt.2_Intron	NM_015074	NP_055889
MACF1	23499	broad.mit.edu	37	1	39889677	39889677	+	Intron	SNP	G	A	A	rs663892	by1000genomes	2011-2293:2012-1333-T	g.chr1:39889677G>A	uc010oiu.1	+						MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron	NM_033044	NP_149033
MDM4	4194	broad.mit.edu	37	1	204512100	204512100	+	Intron	SNP	T	C	C	rs4252717	by1000genomes	2011-2293:2012-1333-T	g.chr1:204512100T>C	uc001hba.2	+						MDM4_uc001hbd.1_Intron|MDM4_uc010pqw.1_Intron|MDM4_uc010pqx.1_Intron|MDM4_uc001hay.1_Intron|MDM4_uc001hbb.2_Intron|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_Intron|MDM4_uc009xbe.1_Intron	NM_002393	NP_002384
BRSK2	9024	broad.mit.edu	37	11	1416034	1416034	+	Intron	SNP	C	A	A			2011-2293:2012-1333-T	g.chr11:1416034C>A	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
PIK3C2G	5288	broad.mit.edu	37	12	18491381	18491381	+	Missense_Mutation	SNP	G	A	A			2011-2293:2012-1333-T	g.chr12:18491381G>A	uc001rdt.2	+	9	1410	c.1294G>A	c.(1294-1296)GAA>AAA	p.E432K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E432K|PIK3C2G_uc010sic.1_Missense_Mutation_p.E210K	NM_004570	NP_004561
H3F3C	440093	broad.mit.edu	37	12	31944475	31944475	+	3'UTR	SNP	C	T	T	rs11051595	by1000genomes	2011-2293:2012-1333-T	g.chr12:31944475C>T	uc001rkr.2	-	1						NM_001013699	NP_001013721
NAV3	89795	broad.mit.edu	37	12	78513699	78513699	+	Silent	SNP	A	G	G			2011-2293:2012-1333-T	g.chr12:78513699A>G	uc001syp.2	+	15	3896	c.3723A>G	c.(3721-3723)CCA>CCG	p.P1241P	NAV3_uc001syo.2_Silent_p.P1241P|NAV3_uc010sub.1_Silent_p.P741P|NAV3_uc009zsf.2_Silent_p.P249P	NM_014903	NP_055718
CDADC1	81602	broad.mit.edu	37	13	49866322	49866322	+	3'UTR	SNP	C	T	T	rs9535193	by1000genomes	2011-2293:2012-1333-T	g.chr13:49866322C>T	uc001vcu.2	+	10					CDADC1_uc010tgk.1_3'UTR|CDADC1_uc001vcv.2_RNA	NM_030911	NP_112173
TPP2	7174	broad.mit.edu	37	13	103328619	103328619	+	Intron	SNP	C	A	A	rs584710	by1000genomes	2011-2293:2012-1333-T	g.chr13:103328619C>A	uc001vpi.3	+							NM_003291	NP_003282
PROZ	8858	broad.mit.edu	37	13	113816515	113816515	+	Intron	SNP	G	C	C			2011-2293:2012-1333-T	g.chr13:113816515G>C	uc001vta.1	+						PROZ_uc010agr.1_Intron	NM_003891	NP_003882
NRXN3	9369	broad.mit.edu	37	14	78870008	78870008	+	5'Flank	SNP	G	C	C			2011-2293:2012-1333-T	g.chr14:78870008G>C	uc001xun.2	+						NRXN3_uc001xum.1_Intron	NM_004796	NP_004787
AKT1	207	broad.mit.edu	37	14	105259706	105259706	+	5'UTR	SNP	C	T	T	rs10138227	byFrequency;by1000genomes	2011-2293:2012-1333-T	g.chr14:105259706C>T	uc001ypk.2	-	1					INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_5'UTR|AKT1_uc010axa.2_Intron|AKT1_uc001ypm.2_Intron|AKT1_uc001ypn.2_Intron	NM_005163	NP_005154
ERN2	10595	broad.mit.edu	37	16	23702608	23702608	+	Intron	SNP	G	C	C			2011-2293:2012-1333-T	g.chr16:23702608G>C	uc002dma.3	-						ERN2_uc010bxp.2_Intron	NM_033266	NP_150296
RPH3AL	9501	broad.mit.edu	37	17	190631	190631	+	Intron	SNP	C	T	T			2011-2293:2012-1333-T	g.chr17:190631C>T	uc002fre.1	-						RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	T	T	rs11540652		2011-2293:2012-1333-T	g.chr17:7577538C>T	uc002gim.2	-	7	937	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	TP53_uc002gig.1_Missense_Mutation_p.R248Q|TP53_uc002gih.2_Missense_Mutation_p.R248Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116Q|TP53_uc010cng.1_Missense_Mutation_p.R116Q|TP53_uc002gii.1_Missense_Mutation_p.R116Q|TP53_uc010cnh.1_Missense_Mutation_p.R248Q|TP53_uc010cni.1_Missense_Mutation_p.R248Q|TP53_uc002gij.2_Missense_Mutation_p.R248Q|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155Q|TP53_uc002gio.2_Missense_Mutation_p.R116Q	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7579312	7579312	+	Silent	SNP	C	A	A	rs55863639		2011-2293:2012-1333-T	g.chr17:7579312C>A	uc002gim.2	-	4	569	c.375G>T	c.(373-375)ACG>ACT	p.T125T	TP53_uc002gig.1_Silent_p.T125T|TP53_uc002gih.2_Silent_p.T125T|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Silent_p.T125T|TP53_uc010cni.1_Silent_p.T125T|TP53_uc002gij.2_Silent_p.T125T|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Silent_p.T86T|TP53_uc010cnk.1_Silent_p.T140T	NM_001126112	NP_001119584
NCOR1	9611	broad.mit.edu	37	17	15938208	15938208	+	Missense_Mutation	SNP	T	G	G			2011-2293:2012-1333-T	g.chr17:15938208T>G	uc002gpo.2	-	45	7246	c.7006A>C	c.(7006-7008)AAG>CAG	p.K2336Q	NCOR1_uc002gpn.2_Missense_Mutation_p.K2233Q|NCOR1_uc002gpl.2_Missense_Mutation_p.K350Q|NCOR1_uc002gpm.2_Missense_Mutation_p.K855Q|NCOR1_uc010vwb.1_Missense_Mutation_p.K920Q|NCOR1_uc010coy.2_Missense_Mutation_p.K1244Q	NM_006311	NP_006302
ABCA6	23460	broad.mit.edu	37	17	67099129	67099129	+	Intron	SNP	A	G	G	rs2364315	by1000genomes	2011-2293:2012-1333-T	g.chr17:67099129A>G	uc002jhw.1	-							NM_080284	NP_525023
TBC1D16	125058	broad.mit.edu	37	17	77998354	77998354	+	Intron	SNP	A	G	G			2011-2293:2012-1333-T	g.chr17:77998354A>G	uc002jxj.2	-							NM_019020	NP_061893
PIK3C3	5289	broad.mit.edu	37	18	39534825	39534825	+	5'Flank	SNP	C	T	T	rs3813065	by1000genomes	2011-2293:2012-1333-T	g.chr18:39534825C>T	uc002lap.2	+						PIK3C3_uc010xcl.1_5'Flank|PIK3C3_uc002lao.2_5'Flank	NM_002647	NP_002638
DOK6	220164	broad.mit.edu	37	18	67365585	67365585	+	Intron	SNP	A	G	G	rs4581806	by1000genomes	2011-2293:2012-1333-T	g.chr18:67365585A>G	uc002lkl.2	+							NM_152721	NP_689934
LMNB2	84823	broad.mit.edu	37	19	2452971	2452971	+	Intron	SNP	A	C	C	rs12972223	by1000genomes	2011-2293:2012-1333-T	g.chr19:2452971A>C	uc002lvy.2	-						LMNB2_uc002lwa.1_Intron	NM_032737	NP_116126
NOTCH3	4854	broad.mit.edu	37	19	15272526	15272526	+	Intron	SNP	C	A	A			2011-2293:2012-1333-T	g.chr19:15272526C>A	uc002nan.2	-							NM_000435	NP_000426
TTN	7273	broad.mit.edu	37	2	179469997	179469997	+	Silent	SNP	C	G	G			2011-2293:2012-1333-T	g.chr2:179469997C>G	uc010zfg.1	-	229	46427	c.46203G>C	c.(46201-46203)CTG>CTC	p.L15401L	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L9096L|TTN_uc010zfi.1_Silent_p.L9029L|TTN_uc010zfj.1_Silent_p.L8904L	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179587687	179587687	+	Intron	SNP	T	C	C	rs2742327	by1000genomes	2011-2293:2012-1333-T	g.chr2:179587687T>C	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179603080	179603080	+	Silent	SNP	T	A	A			2011-2293:2012-1333-T	g.chr2:179603080T>A	uc010zfg.1	-	46	10592	c.10368A>T	c.(10366-10368)CCA>CCT	p.P3456P	TTN_uc010zfh.1_Silent_p.P4529P|TTN_uc010zfi.1_Silent_p.P4462P|TTN_uc010zfj.1_Silent_p.P4337P|TTN_uc002umz.1_Silent_p.P117P	NM_133378	NP_596869
STAT1	6772	broad.mit.edu	37	2	191839976	191839976	+	Intron	SNP	C	T	T	rs1914408	byFrequency;by1000genomes	2011-2293:2012-1333-T	g.chr2:191839976C>T	uc002usj.2	-						STAT1_uc010fse.1_Intron	NM_007315	NP_009330
ABCA12	26154	broad.mit.edu	37	2	215872522	215872522	+	Missense_Mutation	SNP	C	T	T			2011-2293:2012-1333-T	g.chr2:215872522C>T	uc002vew.2	-	19	2741	c.2521G>A	c.(2521-2523)GAG>AAG	p.E841K	ABCA12_uc002vev.2_Missense_Mutation_p.E523K|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099
TAF4	6874	broad.mit.edu	37	20	60553687	60553687	+	Intron	SNP	A	G	G	rs79482470	by1000genomes	2011-2293:2012-1333-T	g.chr20:60553687A>G	uc002ybs.2	-							NM_003185	NP_003176
MYT1	4661	broad.mit.edu	37	20	62833270	62833270	+	Intron	SNP	C	T	T	rs75939601	by1000genomes	2011-2293:2012-1333-T	g.chr20:62833270C>T	uc002yii.2	+						MYT1_uc002yih.2_Intron	NM_004535	NP_004526
MYH9	4627	broad.mit.edu	37	22	36716930	36716930	+	Nonsense_Mutation	SNP	T	A	A			2011-2293:2012-1333-T	g.chr22:36716930T>A	uc003apg.2	-	8	1012	c.781A>T	c.(781-783)AAA>TAA	p.K261*	MYH9_uc003aph.1_Nonsense_Mutation_p.K125*	NM_002473	NP_002464
MLC1	23209	broad.mit.edu	37	22	50500662	50500662	+	Intron	SNP	C	G	G			2011-2293:2012-1333-T	g.chr22:50500662C>G	uc003bjg.1	-						MLC1_uc011arl.1_Intron|MLC1_uc003bjh.1_Intron|MLC1_uc011arm.1_Intron|MLC1_uc011arn.1_Intron|MLC1_uc011aro.1_Intron	NM_139202	NP_631941
PRKCD	5580	broad.mit.edu	37	3	53215875	53215875	+	Intron	SNP	A	C	C	rs11130350	by1000genomes	2011-2293:2012-1333-T	g.chr3:53215875A>C	uc003dgl.2	+						PRKCD_uc003dgm.2_Intron|PRKCD_uc003dgn.2_Missense_Mutation_p.D233A|PRKCD_uc010hmt.1_5'Flank	NM_006254	NP_006245
EPHA3	2042	broad.mit.edu	37	3	89156519	89156519	+	5'Flank	SNP	C	T	T	rs13074291	by1000genomes	2011-2293:2012-1333-T	g.chr3:89156519C>T	uc003dqy.2	+						EPHA3_uc003dqx.1_5'Flank|EPHA3_uc010hon.1_5'Flank	NM_005233	NP_005224
EPHA3	2042	broad.mit.edu	37	3	89259031	89259031	+	Missense_Mutation	SNP	G	T	T			2011-2293:2012-1333-T	g.chr3:89259031G>T	uc003dqy.2	+	3	400	c.175G>T	c.(175-177)GAT>TAT	p.D59Y	EPHA3_uc003dqx.1_Missense_Mutation_p.D59Y|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224
BBX	56987	broad.mit.edu	37	3	107493738	107493738	+	Intron	SNP	A	T	T			2011-2293:2012-1333-T	g.chr3:107493738A>T	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc003dwm.3_Intron|BBX_uc003dwo.3_Intron	NM_001142568	NP_001136040
SLITRK3	22865	broad.mit.edu	37	3	164907029	164907029	+	Silent	SNP	G	T	T			2011-2293:2012-1333-T	g.chr3:164907029G>T	uc003fej.3	-	2	2034	c.1590C>A	c.(1588-1590)GCC>GCA	p.A530A	SLITRK3_uc003fek.2_Silent_p.A530A	NM_014926	NP_055741
MECOM	2122	broad.mit.edu	37	3	169099123	169099123	+	Missense_Mutation	SNP	A	T	T			2011-2293:2012-1333-T	g.chr3:169099123A>T	uc011bpj.1	-	2	630	c.227T>A	c.(226-228)ATT>AAT	p.I76N	MECOM_uc003ffl.2_Missense_Mutation_p.I48N|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Missense_Mutation_p.I76N|MECOM_uc011bpl.1_Missense_Mutation_p.I76N	NM_004991	NP_004982
GABRA4	2557	broad.mit.edu	37	4	46973233	46973233	+	Silent	SNP	C	T	T			2011-2293:2012-1333-T	g.chr4:46973233C>T	uc003gxg.2	-	7	880	c.741G>A	c.(739-741)ACG>ACA	p.T247T		NM_000809	NP_000800
INPP4B	8821	broad.mit.edu	37	4	143383850	143383850	+	5'UTR	SNP	T	C	C			2011-2293:2012-1333-T	g.chr4:143383850T>C	uc003iix.3	-	4					INPP4B_uc003iiw.3_5'UTR|INPP4B_uc011cho.1_RNA|INPP4B_uc003iiz.2_RNA	NM_003866	NP_003857
FBXW7	55294	broad.mit.edu	37	4	153245374	153245374	+	Missense_Mutation	SNP	C	A	A			2011-2293:2012-1333-T	g.chr4:153245374C>A	uc003ims.2	-	11	1966	c.1817G>T	c.(1816-1818)TGG>TTG	p.W606L	FBXW7_uc011cii.1_Missense_Mutation_p.W606L|FBXW7_uc003imt.2_Missense_Mutation_p.W606L|FBXW7_uc011cih.1_Missense_Mutation_p.W430L|FBXW7_uc003imq.2_Missense_Mutation_p.W526L|FBXW7_uc003imr.2_Missense_Mutation_p.W488L	NM_033632	NP_361014
CDH10	1008	broad.mit.edu	37	5	24645257	24645257	+	5'Flank	SNP	A	T	T	rs79959666	by1000genomes	2011-2293:2012-1333-T	g.chr5:24645257A>T	uc003jgr.1	-						CDH10_uc011cnu.1_5'Flank	NM_006727	NP_006718
CDH9	1007	broad.mit.edu	37	5	26890584	26890584	+	Missense_Mutation	SNP	C	A	A			2011-2293:2012-1333-T	g.chr5:26890584C>A	uc003jgs.1	-	8	1512	c.1343G>T	c.(1342-1344)CGG>CTG	p.R448L	CDH9_uc011cnv.1_Missense_Mutation_p.R41L	NM_016279	NP_057363
HLA-G	3135	broad.mit.edu	37	6	29798419	29798419	+	Intron	SNP	G	A	A	rs114465251	byFrequency;by1000genomes	2011-2293:2012-1333-T	g.chr6:29798419G>A	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
ROS1	6098	broad.mit.edu	37	6	117737479	117737479	+	Missense_Mutation	SNP	C	T	T			2011-2293:2012-1333-T	g.chr6:117737479C>T	uc003pxp.1	-	3	369	c.170G>A	c.(169-171)TGT>TAT	p.C57Y	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
SYNE1	23345	broad.mit.edu	37	6	152461061	152461061	+	Intron	SNP	G	A	A	rs3818110	by1000genomes	2011-2293:2012-1333-T	g.chr6:152461061G>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152546997	152546997	+	Missense_Mutation	SNP	C	A	A			2011-2293:2012-1333-T	g.chr6:152546997C>A	uc010kiw.2	-	116	21812	c.21210G>T	c.(21208-21210)TTG>TTT	p.L7070F	SYNE1_uc010kiv.2_Missense_Mutation_p.L1594F|SYNE1_uc003qos.3_Missense_Mutation_p.L1594F|SYNE1_uc003qot.3_Missense_Mutation_p.L6999F|SYNE1_uc003qou.3_Missense_Mutation_p.L7070F|SYNE1_uc003qor.3_5'UTR	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152716612	152716612	+	Intron	SNP	G	T	T			2011-2293:2012-1333-T	g.chr6:152716612G>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152762246	152762246	+	Intron	SNP	C	A	A			2011-2293:2012-1333-T	g.chr6:152762246C>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron	NM_182961	NP_892006
PRKAR1B	5575	broad.mit.edu	37	7	675589	675589	+	Intron	SNP	C	A	A			2011-2293:2012-1333-T	g.chr7:675589C>A	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron	NM_002735	NP_002726
BBS9	27241	broad.mit.edu	37	7	33217023	33217023	+	Intron	SNP	G	T	T			2011-2293:2012-1333-T	g.chr7:33217023G>T	uc003tdn.1	+						BBS9_uc003tdo.1_Intron|BBS9_uc003tdp.1_Intron|BBS9_uc003tdq.1_Intron|BBS9_uc010kwn.1_Intron|BBS9_uc011kan.1_Intron|BBS9_uc011kao.1_Intron	NM_198428	NP_940820
WBSCR17	64409	broad.mit.edu	37	7	71134961	71134961	+	Missense_Mutation	SNP	C	T	T			2011-2293:2012-1333-T	g.chr7:71134961C>T	uc003tvy.2	+	8	1271	c.1271C>T	c.(1270-1272)CCG>CTG	p.P424L	WBSCR17_uc003tvz.2_Missense_Mutation_p.P123L	NM_022479	NP_071924
GRM8	2918	broad.mit.edu	37	7	126173762	126173762	+	Silent	SNP	C	A	A			2011-2293:2012-1333-T	g.chr7:126173762C>A	uc003vlr.2	-	8	1985	c.1674G>T	c.(1672-1674)CTG>CTT	p.L558L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.L558L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836
EZH2	2146	broad.mit.edu	37	7	148508833	148508833	+	Intron	SNP	A	G	G	rs2072407	by1000genomes	2011-2293:2012-1333-T	g.chr7:148508833A>G	uc003wfd.1	-						EZH2_uc011kug.1_Intron|EZH2_uc003wfb.1_Intron|EZH2_uc003wfc.1_Intron|EZH2_uc011kuh.1_Intron	NM_004456	NP_004447
PTPRN2	5799	broad.mit.edu	37	7	158278120	158278120	+	Intron	SNP	C	A	A			2011-2293:2012-1333-T	g.chr7:158278120C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158295535	158295535	+	Intron	SNP	G	A	A			2011-2293:2012-1333-T	g.chr7:158295535G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158295537	158295537	+	Intron	SNP	C	T	T			2011-2293:2012-1333-T	g.chr7:158295537C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PCM1	5108	broad.mit.edu	37	8	17871563	17871563	+	Intron	SNP	G	C	C	rs73666809	by1000genomes	2011-2293:2012-1333-T	g.chr8:17871563G>C	uc003wyi.3	+						PCM1_uc011kyh.1_Intron|PCM1_uc003wyj.3_Intron|PCM1_uc011kyi.1_Intron|PCM1_uc011kyj.1_Intron|PCM1_uc003wyk.3_Intron|PCM1_uc011kyk.1_Intron	NM_006197	NP_006188
FGFR1	2260	broad.mit.edu	37	8	38279396	38279396	+	Missense_Mutation	SNP	C	G	G			2011-2293:2012-1333-T	g.chr8:38279396C>G	uc003xlp.2	-	8	1942	c.1000G>C	c.(1000-1002)GAG>CAG	p.E334Q	FGFR1_uc011lbo.1_Missense_Mutation_p.E332Q|FGFR1_uc011lbp.1_Missense_Mutation_p.E245Q|FGFR1_uc011lbq.1_Missense_Mutation_p.E243Q|FGFR1_uc010lwk.2_Missense_Mutation_p.E326Q|FGFR1_uc011lbr.1_RNA|FGFR1_uc011lbs.1_Missense_Mutation_p.E174Q|FGFR1_uc011lbt.1_Intron|FGFR1_uc011lbu.1_Missense_Mutation_p.E365Q|FGFR1_uc011lbv.1_Missense_Mutation_p.E332Q|FGFR1_uc011lbw.1_Missense_Mutation_p.E245Q|FGFR1_uc011lbx.1_Missense_Mutation_p.E245Q	NM_023110	NP_075598
RB1CC1	9821	broad.mit.edu	37	8	53596267	53596267	+	Missense_Mutation	SNP	T	A	A			2011-2293:2012-1333-T	g.chr8:53596267T>A	uc003xre.3	-	5	769	c.211A>T	c.(211-213)ATT>TTT	p.I71F	RB1CC1_uc003xrf.3_Missense_Mutation_p.I71F	NM_014781	NP_055596
ZFHX4	79776	broad.mit.edu	37	8	77766311	77766311	+	Missense_Mutation	SNP	C	A	A			2011-2293:2012-1333-T	g.chr8:77766311C>A	uc003yav.2	+	10	7406	c.7019C>A	c.(7018-7020)TCT>TAT	p.S2340Y	ZFHX4_uc003yau.1_Missense_Mutation_p.S2385Y|ZFHX4_uc003yaw.1_Missense_Mutation_p.S2340Y	NM_024721	NP_078997
CSMD3	114788	broad.mit.edu	37	8	113347650	113347650	+	Missense_Mutation	SNP	G	T	T			2011-2293:2012-1333-T	g.chr8:113347650G>T	uc003ynu.2	-	45	7232	c.7073C>A	c.(7072-7074)GCT>GAT	p.A2358D	CSMD3_uc003yns.2_Missense_Mutation_p.A1560D|CSMD3_uc003ynt.2_Missense_Mutation_p.A2318D|CSMD3_uc011lhx.1_Missense_Mutation_p.A2254D|CSMD3_uc003ynw.1_Missense_Mutation_p.A69D	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113516073	113516073	+	Missense_Mutation	SNP	C	T	T			2011-2293:2012-1333-T	g.chr8:113516073C>T	uc003ynu.2	-	30	5188	c.5029G>A	c.(5029-5031)GCT>ACT	p.A1677T	CSMD3_uc003yns.2_Missense_Mutation_p.A949T|CSMD3_uc003ynt.2_Missense_Mutation_p.A1637T|CSMD3_uc011lhx.1_Missense_Mutation_p.A1573T	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113585637	113585637	+	Intron	SNP	A	G	G	rs7014796	by1000genomes	2011-2293:2012-1333-T	g.chr8:113585637A>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CDKN2A	1029	broad.mit.edu	37	9	21974730	21974730	+	Nonsense_Mutation	SNP	C	A	A			2011-2293:2012-1333-T	g.chr9:21974730C>A	uc003zpk.2	-	1	309	c.97G>T	c.(97-99)GAG>TAG	p.E33*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Nonsense_Mutation_p.E33*|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068
GNAQ	2776	broad.mit.edu	37	9	80409345	80409345	+	Intron	SNP	A	G	G	rs1328529	by1000genomes	2011-2293:2012-1333-T	g.chr9:80409345A>G	uc004akw.2	-						GNAQ_uc011lso.1_Intron	NM_002072	NP_002063
QSOX2	169714	broad.mit.edu	37	9	139129544	139129544	+	Intron	SNP	C	T	T	rs113408184	by1000genomes	2011-2293:2012-1333-T	g.chr9:139129544C>T	uc010nbi.2	-							NM_181701	NP_859052
NOTCH1	4851	broad.mit.edu	37	9	139403268	139403268	+	Intron	SNP	T	C	C	rs3125000	by1000genomes	2011-2293:2012-1333-T	g.chr9:139403268T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
IRF6	3664	broad.mit.edu	37	1	209965533	209965533	+	Intron	SNP	G	C	C			2011-2297:2012-323-T	g.chr1:209965533G>C	uc001hhq.1	-						IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Intron	NM_006147	NP_006138
IRF6	3664	broad.mit.edu	37	1	209969714	209969714	+	Nonsense_Mutation	SNP	G	A	A			2011-2297:2012-323-T	g.chr1:209969714G>A	uc001hhq.1	-	4	621	c.358C>T	c.(358-360)CAG>TAG	p.Q120*	IRF6_uc010psm.1_Nonsense_Mutation_p.Q25*|IRF6_uc009xct.1_Nonsense_Mutation_p.Q120*	NM_006147	NP_006138
PIK3C2A	5286	broad.mit.edu	37	11	17191720	17191720	+	5'Flank	SNP	T	G	G			2011-2297:2012-323-T	g.chr11:17191720T>G	uc001mmq.3	-						PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Intron|PIK3C2A_uc001mmr.3_Intron|PIK3C2A_uc010rcx.1_Intron|PIK3C2A_uc009ygv.1_Intron	NM_002645	NP_002636
OR4C15	81309	broad.mit.edu	37	11	55322817	55322817	+	Missense_Mutation	SNP	G	C	C			2011-2297:2012-323-T	g.chr11:55322817G>C	uc010rig.1	+	1	1035	c.1035G>C	c.(1033-1035)AAG>AAC	p.K345N		NM_001001920	NP_001001920
PZP	5858	broad.mit.edu	37	12	9353577	9353577	+	Missense_Mutation	SNP	G	A	A			2011-2297:2012-323-T	g.chr12:9353577G>A	uc001qvl.2	-	6	610	c.581C>T	c.(580-582)TCA>TTA	p.S194L	PZP_uc009zgl.2_Missense_Mutation_p.S63L	NM_002864	NP_002855
SYNE2	23224	broad.mit.edu	37	14	64599307	64599307	+	Intron	SNP	G	C	C			2011-2297:2012-323-T	g.chr14:64599307G>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64655662	64655662	+	Intron	SNP	C	T	T			2011-2297:2012-323-T	g.chr14:64655662C>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron	NM_015180	NP_055995
LMF1	64788	broad.mit.edu	37	16	1001359	1001359	+	Intron	SNP	C	G	G	rs3852753	by1000genomes	2011-2297:2012-323-T	g.chr16:1001359C>G	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
SETD1A	9739	broad.mit.edu	37	16	30970045	30970045	+	5'UTR	SNP	G	A	A			2011-2297:2012-323-T	g.chr16:30970045G>A	uc002ead.1	+	2					SETD1A_uc002eae.1_5'UTR	NM_014712	NP_055527
ABR	29	broad.mit.edu	37	17	1046533	1046534	+	Intron	DNP	GC	AT	AT			2011-2297:2012-323-T	g.chr17:1046533_1046534GC>AT	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
NCOR1	9611	broad.mit.edu	37	17	15978831	15978831	+	Intron	SNP	A	C	C			2011-2297:2012-323-T	g.chr17:15978831A>C	uc002gpo.2	-						NCOR1_uc002gpn.2_Intron|NCOR1_uc002gpp.1_Intron|NCOR1_uc010vwb.1_Intron|NCOR1_uc010coy.2_Intron|NCOR1_uc010vwc.1_Intron	NM_006311	NP_006302
NF1	4763	broad.mit.edu	37	17	29527494	29527494	+	Nonsense_Mutation	SNP	C	T	T			2011-2297:2012-323-T	g.chr17:29527494C>T	uc002hgg.2	+	9	1276	c.943C>T	c.(943-945)CAG>TAG	p.Q315*	NF1_uc002hge.1_Nonsense_Mutation_p.Q315*|NF1_uc002hgf.1_Nonsense_Mutation_p.Q315*|NF1_uc002hgh.2_Nonsense_Mutation_p.Q315*|NF1_uc010csn.1_Nonsense_Mutation_p.Q175*	NM_001042492	NP_001035957
PHLPP1	23239	broad.mit.edu	37	18	60582022	60582022	+	Intron	SNP	C	T	T			2011-2297:2012-323-T	g.chr18:60582022C>T	uc002lis.2	+							NM_194449	NP_919431
PXDN	7837	broad.mit.edu	37	2	1708334	1708334	+	Intron	SNP	A	G	G			2011-2297:2012-323-T	g.chr2:1708334A>G	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
LRP1B	53353	broad.mit.edu	37	2	141214064	141214064	+	Missense_Mutation	SNP	G	T	T			2011-2297:2012-323-T	g.chr2:141214064G>T	uc002tvj.1	-	62	10895	c.9923C>A	c.(9922-9924)GCT>GAT	p.A3308D		NM_018557	NP_061027
ZEB2	9839	broad.mit.edu	37	2	145187476	145187476	+	Missense_Mutation	SNP	C	T	T			2011-2297:2012-323-T	g.chr2:145187476C>T	uc002tvu.2	-	3	671	c.191G>A	c.(190-192)AGT>AAT	p.S64N	ZEB2_uc002tvv.2_Missense_Mutation_p.S59N|ZEB2_uc010zbm.1_Missense_Mutation_p.S59N|ZEB2_uc010fnp.2_Missense_Mutation_p.S59N|ZEB2_uc010fnq.1_Missense_Mutation_p.S93N|ZEB2_uc002tvw.2_Missense_Mutation_p.S59N	NM_014795	NP_055610
NFE2L2	4780	broad.mit.edu	37	2	178097918	178097918	+	Intron	SNP	G	C	C			2011-2297:2012-323-T	g.chr2:178097918G>C	uc002ulh.3	-						NFE2L2_uc002ulg.3_Intron|NFE2L2_uc010zfa.1_Intron|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_Missense_Mutation_p.I138M	NM_006164	NP_006155
TTN	7273	broad.mit.edu	37	2	179480402	179480402	+	Nonsense_Mutation	SNP	A	T	T			2011-2297:2012-323-T	g.chr2:179480402A>T	uc010zfg.1	-	207	40946	c.40722T>A	c.(40720-40722)TAT>TAA	p.Y13574*	TTN_uc010zfh.1_Nonsense_Mutation_p.Y7269*|TTN_uc010zfi.1_Nonsense_Mutation_p.Y7202*|TTN_uc010zfj.1_Nonsense_Mutation_p.Y7077*	NM_133378	NP_596869
MICAL3	57553	broad.mit.edu	37	22	18360211	18360211	+	Intron	SNP	G	A	A			2011-2297:2012-323-T	g.chr22:18360211G>A	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
TET2	54790	broad.mit.edu	37	4	106157700	106157700	+	Nonsense_Mutation	SNP	T	A	A	rs145844118		2011-2297:2012-323-T	g.chr4:106157700T>A	uc003hxk.2	+	3	2987	c.2601T>A	c.(2599-2601)TAT>TAA	p.Y867*	TET2_uc011cez.1_Nonsense_Mutation_p.Y888*|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Nonsense_Mutation_p.Y867*|TET2_uc003hxi.1_Nonsense_Mutation_p.Y867*	NM_001127208	NP_001120680
AIM1	202	broad.mit.edu	37	6	106959637	106959637	+	5'Flank	SNP	G	A	A			2011-2297:2012-323-T	g.chr6:106959637G>A	uc003prh.2	+							NM_001624	NP_001615
HBS1L	10767	broad.mit.edu	37	6	135303768	135303768	+	Intron	SNP	T	C	C			2011-2297:2012-323-T	g.chr6:135303768T>C	uc003qez.2	-						HBS1L_uc003qey.2_Intron|HBS1L_uc011ecy.1_Intron|HBS1L_uc011ecz.1_Intron|HBS1L_uc011eda.1_Intron	NM_006620	NP_006611
SYNE1	23345	broad.mit.edu	37	6	152651000	152651000	+	Silent	SNP	G	A	A			2011-2297:2012-323-T	g.chr6:152651000G>A	uc010kiw.2	-	78	15422	c.14820C>T	c.(14818-14820)ATC>ATT	p.I4940I	SYNE1_uc003qot.3_Silent_p.I4869I|SYNE1_uc003qou.3_Silent_p.I4940I|SYNE1_uc010kiz.2_Silent_p.I695I	NM_182961	NP_892006
HUWE1	10075	broad.mit.edu	37	X	53603920	53603920	+	Missense_Mutation	SNP	T	C	C	rs146386689		2011-2297:2012-323-T	g.chrX:53603920T>C	uc004dsp.2	-	44	6226	c.5824A>G	c.(5824-5826)ATC>GTC	p.I1942V	HUWE1_uc004dsn.2_Missense_Mutation_p.I767V	NM_031407	NP_113584
KIAA1751	85452	broad.mit.edu	37	1	1900800	1900800	+	Intron	SNP	A	C	C			2011-2298:2012-322-T	g.chr1:1900800A>C	uc001aim.1	-						KIAA1751_uc009vkz.1_Intron	NM_001080484	NP_001073953
COL11A1	1301	broad.mit.edu	37	1	103496779	103496779	+	Missense_Mutation	SNP	T	C	C			2011-2298:2012-322-T	g.chr1:103496779T>C	uc001dul.2	-	5	991	c.673A>G	c.(673-675)ATC>GTC	p.I225V	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.I225V|COL11A1_uc001dun.2_Missense_Mutation_p.I225V|COL11A1_uc009weh.2_Missense_Mutation_p.I225V	NM_001854	NP_001845
USH2A	7399	broad.mit.edu	37	1	215916372	215916372	+	Intron	SNP	G	C	C			2011-2298:2012-322-T	g.chr1:215916372G>C	uc001hku.1	-							NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216380670	216380670	+	Nonsense_Mutation	SNP	G	T	T			2011-2298:2012-322-T	g.chr1:216380670G>T	uc001hku.1	-	16	3648	c.3261C>A	c.(3259-3261)TAC>TAA	p.Y1087*	USH2A_uc001hkv.2_Nonsense_Mutation_p.Y1087*	NM_206933	NP_996816
DIP2C	22982	broad.mit.edu	37	10	725565	725566	+	Intron	DNP	TG	CA	CA			2011-2298:2012-322-T	g.chr10:725565_725566TG>CA	uc001ifp.2	-							NM_014974	NP_055789
ANXA8	653145	broad.mit.edu	37	10	47059281	47059281	+	Intron	SNP	A	G	G			2011-2298:2012-322-T	g.chr10:47059281A>G	uc001jed.3	-								
ANXA8	653145	broad.mit.edu	37	10	47059292	47059292	+	Intron	SNP	A	G	G			2011-2298:2012-322-T	g.chr10:47059292A>G	uc001jed.3	-								
IGF2	3481	broad.mit.edu	37	11	2153129	2153129	+	3'UTR	SNP	G	A	A			2011-2298:2012-322-T	g.chr11:2153129G>A	uc009yde.2	-	4					IGF2_uc001lvf.2_RNA|IGF2_uc001lvg.2_3'UTR|IGF2_uc009ydf.2_3'UTR|IGF2_uc001lvh.2_3'UTR|INS-IGF2_uc001lvi.2_RNA	NM_001007139	NP_001007140
SLC2A13	114134	broad.mit.edu	37	12	40345198	40345198	+	Intron	SNP	C	G	G			2011-2298:2012-322-T	g.chr12:40345198C>G	uc010skm.1	-						SLC2A13_uc001rmf.2_Intron	NM_052885	NP_443117
TMEM132D	121256	broad.mit.edu	37	12	129574033	129574033	+	Intron	SNP	C	A	A			2011-2298:2012-322-T	g.chr12:129574033C>A	uc009zyl.1	-							NM_133448	NP_597705
SYNE2	23224	broad.mit.edu	37	14	64565245	64565245	+	Intron	SNP	G	A	A			2011-2298:2012-322-T	g.chr14:64565245G>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apx.1_Intron|SYNE2_uc010apz.1_5'Flank	NM_015180	NP_055995
LMF1	64788	broad.mit.edu	37	16	998857	998857	+	Intron	SNP	C	T	T	rs34349854		2011-2298:2012-322-T	g.chr16:998857C>T	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1003057	1003057	+	Intron	SNP	G	A	A			2011-2298:2012-322-T	g.chr16:1003057G>A	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
TP53	7157	broad.mit.edu	37	17	7578526	7578526	+	Missense_Mutation	SNP	C	T	T			2011-2298:2012-322-T	g.chr17:7578526C>T	uc002gim.2	-	5	598	c.404G>A	c.(403-405)TGC>TAC	p.C135Y	TP53_uc002gig.1_Missense_Mutation_p.C135Y|TP53_uc002gih.2_Missense_Mutation_p.C135Y|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.C3Y|TP53_uc010cng.1_Missense_Mutation_p.C3Y|TP53_uc002gii.1_Missense_Mutation_p.C3Y|TP53_uc010cnh.1_Missense_Mutation_p.C135Y|TP53_uc010cni.1_Missense_Mutation_p.C135Y|TP53_uc002gij.2_Missense_Mutation_p.C135Y|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.C42Y|TP53_uc002gio.2_Missense_Mutation_p.C3Y|TP53_uc010vug.1_Missense_Mutation_p.C96Y	NM_001126112	NP_001119584
BRCA1	672	broad.mit.edu	37	17	41321905	41321905	+	Intron	SNP	C	G	G			2011-2298:2012-322-T	g.chr17:41321905C>G	uc010whp.1	-						uc010czc.2_Intron|NBR1_uc010czd.2_5'Flank|NBR1_uc010diz.2_5'Flank|NBR1_uc010whu.1_5'Flank|NBR1_uc010whv.1_5'Flank|NBR1_uc010whw.1_5'Flank	NM_007298	NP_009229
SEC14L1	6397	broad.mit.edu	37	17	75212138	75212138	+	3'UTR	SNP	C	T	T			2011-2298:2012-322-T	g.chr17:75212138C>T	uc002jto.2	+	17					SEC14L1_uc010dhc.2_Intron|SEC14L1_uc010wth.1_3'UTR|SEC14L1_uc002jtm.2_3'UTR|SEC14L1_uc010wti.1_3'UTR	NM_003003	NP_002994
CDH2	1000	broad.mit.edu	37	18	25736606	25736606	+	Intron	SNP	C	A	A	rs71370785		2011-2298:2012-322-T	g.chr18:25736606C>A	uc002kwg.2	-							NM_001792	NP_001783
SETBP1	26040	broad.mit.edu	37	18	42643275	42643275	+	Missense_Mutation	SNP	C	G	G			2011-2298:2012-322-T	g.chr18:42643275C>G	uc010dni.2	+	6	4699	c.4403C>G	c.(4402-4404)TCC>TGC	p.S1468C		NM_015559	NP_056374
SMAD4	4089	broad.mit.edu	37	18	48573459	48573459	+	Missense_Mutation	SNP	G	A	A			2011-2298:2012-322-T	g.chr18:48573459G>A	uc010xdp.1	+	2	581	c.43G>A	c.(43-45)GCC>ACC	p.A15T	SMAD4_uc010xdo.1_RNA	NM_005359	NP_005350
ZNF180	7733	broad.mit.edu	37	19	44981095	44981095	+	Missense_Mutation	SNP	G	C	C			2011-2298:2012-322-T	g.chr19:44981095G>C	uc002ozf.3	-	5	1885	c.1603C>G	c.(1603-1605)CAG>GAG	p.Q535E	ZNF180_uc002ozh.3_Missense_Mutation_p.Q192E|ZNF180_uc002ozi.3_Missense_Mutation_p.Q508E|ZNF180_uc002ozg.3_Missense_Mutation_p.Q534E|ZNF180_uc010ejm.2_Missense_Mutation_p.Q510E	NM_013256	NP_037388
NTN5	126147	broad.mit.edu	37	19	49172647	49172647	+	Intron	SNP	C	T	T			2011-2298:2012-322-T	g.chr19:49172647C>T	uc002pkb.2	-						SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Intron	NM_145807	NP_665806
NLRP12	91662	broad.mit.edu	37	19	54310750	54310750	+	Missense_Mutation	SNP	T	A	A			2011-2298:2012-322-T	g.chr19:54310750T>A	uc002qch.3	-	4	2462	c.2242A>T	c.(2242-2244)AGG>TGG	p.R748W	NLRP12_uc010eqw.2_5'UTR|NLRP12_uc002qci.3_Missense_Mutation_p.R748W|NLRP12_uc002qcj.3_Missense_Mutation_p.R749W|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.R749W	NM_144687	NP_653288
HPCAL1	3241	broad.mit.edu	37	2	10539397	10539397	+	Intron	SNP	C	T	T			2011-2298:2012-322-T	g.chr2:10539397C>T	uc002raj.2	+						HPCAL1_uc002rak.2_Intron|HPCAL1_uc002ral.2_Intron|HPCAL1_uc010exe.2_Intron|HPCAL1_uc010exf.2_Intron	NM_002149	NP_002140
HPCAL1	3241	broad.mit.edu	37	2	10539427	10539427	+	Intron	SNP	C	T	T			2011-2298:2012-322-T	g.chr2:10539427C>T	uc002raj.2	+						HPCAL1_uc002rak.2_Intron|HPCAL1_uc002ral.2_Intron|HPCAL1_uc010exe.2_Intron|HPCAL1_uc010exf.2_Intron	NM_002149	NP_002140
CNGA3	1261	broad.mit.edu	37	2	99012306	99012306	+	Splice_Site	SNP	G	C	C			2011-2298:2012-322-T	g.chr2:99012306G>C	uc002syt.2	+	8	1091	c.674_splice	c.e8-1	p.G225_splice	CNGA3_uc002syu.2_Splice_Site_p.G207_splice|CNGA3_uc010fij.2_Splice_Site_p.G229_splice	NM_001298	NP_001289
TTN	7273	broad.mit.edu	37	2	179411817	179411817	+	Missense_Mutation	SNP	A	G	G			2011-2298:2012-322-T	g.chr2:179411817A>G	uc010zfg.1	-	289	86955	c.86731T>C	c.(86731-86733)TAT>CAT	p.Y28911H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.Y22606H|TTN_uc010zfi.1_Missense_Mutation_p.Y22539H|TTN_uc010zfj.1_Missense_Mutation_p.Y22414H	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179594537	179594537	+	Missense_Mutation	SNP	G	A	A			2011-2298:2012-322-T	g.chr2:179594537G>A	uc010zfg.1	-	60	14935	c.14711C>T	c.(14710-14712)GCC>GTC	p.A4904V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.A1565V	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179634544	179634544	+	Missense_Mutation	SNP	C	G	G			2011-2298:2012-322-T	g.chr2:179634544C>G	uc010zfg.1	-	37	8988	c.8764G>C	c.(8764-8766)GAG>CAG	p.E2922Q	TTN_uc010zfh.1_Missense_Mutation_p.E2876Q|TTN_uc010zfi.1_Missense_Mutation_p.E2876Q|TTN_uc010zfj.1_Missense_Mutation_p.E2876Q|TTN_uc002unb.2_Missense_Mutation_p.E2922Q	NM_133378	NP_596869
STAT1	6772	broad.mit.edu	37	2	191841922	191841922	+	Intron	SNP	T	C	C			2011-2298:2012-322-T	g.chr2:191841922T>C	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron	NM_007315	NP_009330
TAF4	6874	broad.mit.edu	37	20	60561279	60561279	+	Intron	SNP	T	C	C			2011-2298:2012-322-T	g.chr20:60561279T>C	uc002ybs.2	-							NM_003185	NP_003176
CNTN6	27255	broad.mit.edu	37	3	1444072	1444072	+	Missense_Mutation	SNP	T	A	A			2011-2298:2012-322-T	g.chr3:1444072T>A	uc003boz.2	+	22	3155	c.2888T>A	c.(2887-2889)CTG>CAG	p.L963Q	CNTN6_uc011asj.1_Missense_Mutation_p.L891Q|CNTN6_uc003bpa.2_Missense_Mutation_p.L963Q	NM_014461	NP_055276
EPHA3	2042	broad.mit.edu	37	3	89390058	89390058	+	Intron	SNP	G	T	T			2011-2298:2012-322-T	g.chr3:89390058G>T	uc003dqy.2	+						EPHA3_uc003dqx.1_Intron|EPHA3_uc010hon.1_Intron	NM_005233	NP_005224
BBX	56987	broad.mit.edu	37	3	107429465	107429465	+	Missense_Mutation	SNP	A	G	G			2011-2298:2012-322-T	g.chr3:107429465A>G	uc010hpr.2	+	4	485	c.158A>G	c.(157-159)GAT>GGT	p.D53G	BBX_uc003dwk.3_Missense_Mutation_p.D53G|BBX_uc003dwl.3_Missense_Mutation_p.D53G|BBX_uc010hps.1_Missense_Mutation_p.D74G|BBX_uc003dwm.3_Missense_Mutation_p.D53G	NM_001142568	NP_001136040
TP63	8626	broad.mit.edu	37	3	189604194	189604194	+	Missense_Mutation	SNP	A	G	G			2011-2298:2012-322-T	g.chr3:189604194A>G	uc003fry.2	+	11	1450	c.1361A>G	c.(1360-1362)CAG>CGG	p.Q454R	TP63_uc003frz.2_Missense_Mutation_p.Q454R|TP63_uc010hzc.1_Missense_Mutation_p.Q454R|TP63_uc003fsc.2_Missense_Mutation_p.Q360R|TP63_uc003fsd.2_Missense_Mutation_p.Q360R|TP63_uc010hzd.1_Missense_Mutation_p.Q275R	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195502429	195502429	+	Intron	SNP	A	G	G			2011-2298:2012-322-T	g.chr3:195502429A>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
KDR	3791	broad.mit.edu	37	4	55948758	55948758	+	Missense_Mutation	SNP	A	T	T			2011-2298:2012-322-T	g.chr4:55948758A>T	uc003has.2	-	28	4009	c.3707T>A	c.(3706-3708)GTA>GAA	p.V1236E	KDR_uc003hat.1_Missense_Mutation_p.V1236E	NM_002253	NP_002244
SLC6A18	348932	broad.mit.edu	37	5	1227299	1227299	+	Intron	SNP	C	T	T			2011-2298:2012-322-T	g.chr5:1227299C>T	uc003jby.1	+							NM_182632	NP_872438
SLCO4C1	353189	broad.mit.edu	37	5	101606528	101606528	+	Intron	SNP	T	C	C	rs66964883		2011-2298:2012-322-T	g.chr5:101606528T>C	uc003knm.2	-							NM_180991	NP_851322
E2F3	1871	broad.mit.edu	37	6	20490405	20490405	+	Missense_Mutation	SNP	C	A	A			2011-2298:2012-322-T	g.chr6:20490405C>A	uc003nda.2	+	7	1469	c.1142C>A	c.(1141-1143)GCT>GAT	p.A381D		NM_001949	NP_001940
HLA-F	3134	broad.mit.edu	37	6	29689425	29689425	+	5'Flank	SNP	G	C	C			2011-2298:2012-322-T	g.chr6:29689425G>C	uc010jrl.2	+						HLA-F_uc003nnm.3_5'Flank|HLA-F_uc003nno.3_5'Flank|HLA-F_uc011dlx.1_5'Flank|HLA-F_uc011dly.1_5'Flank	NM_018950	NP_061823
AIM1	202	broad.mit.edu	37	6	106968385	106968385	+	Missense_Mutation	SNP	C	G	G			2011-2298:2012-322-T	g.chr6:106968385C>G	uc003prh.2	+	2	2565	c.2078C>G	c.(2077-2079)TCT>TGT	p.S693C		NM_001624	NP_001615
THSD7A	221981	broad.mit.edu	37	7	11416197	11416197	+	Missense_Mutation	SNP	C	A	A			2011-2298:2012-322-T	g.chr7:11416197C>A	uc003ssf.3	-	26	5141	c.4889G>T	c.(4888-4890)TGC>TTC	p.C1630F	uc003ssb.2_Intron|THSD7A_uc003ssd.3_Missense_Mutation_p.C134F	NM_015204	NP_056019
THSD7A	221981	broad.mit.edu	37	7	11509534	11509534	+	Missense_Mutation	SNP	C	A	A			2011-2298:2012-322-T	g.chr7:11509534C>A	uc003ssf.3	-	9	2592	c.2340G>T	c.(2338-2340)TGG>TGT	p.W780C		NM_015204	NP_056019
SLC26A3	1811	broad.mit.edu	37	7	107423341	107423341	+	Intron	SNP	C	G	G			2011-2298:2012-322-T	g.chr7:107423341C>G	uc003ver.2	-						SLC26A3_uc003ves.2_Intron	NM_000111	NP_000102
MET	4233	broad.mit.edu	37	7	116398461	116398461	+	Intron	SNP	A	G	G			2011-2298:2012-322-T	g.chr7:116398461A>G	uc003vij.2	+						MET_uc010lkh.2_Intron|MET_uc011kng.1_Intron|MET_uc011knh.1_Intron|MET_uc011kni.1_Intron|MET_uc011knj.1_Intron	NM_000245	NP_000236
EXOC4	60412	broad.mit.edu	37	7	132937628	132937628	+	5'Flank	SNP	A	T	T			2011-2298:2012-322-T	g.chr7:132937628A>T	uc003vrk.2	+						EXOC4_uc011kpo.1_5'Flank|EXOC4_uc003vri.2_5'Flank|EXOC4_uc003vrj.2_5'Flank	NM_021807	NP_068579
KIAA1549	57670	broad.mit.edu	37	7	138597024	138597024	+	Intron	SNP	G	C	C			2011-2298:2012-322-T	g.chr7:138597024G>C	uc011kql.1	-						KIAA1549_uc003vuk.3_Intron|KIAA1549_uc011kqj.1_Intron	NM_020910	NP_065961
RB1CC1	9821	broad.mit.edu	37	8	53569276	53569276	+	Missense_Mutation	SNP	T	C	C			2011-2298:2012-322-T	g.chr8:53569276T>C	uc003xre.3	-	15	3671	c.3113A>G	c.(3112-3114)GAA>GGA	p.E1038G	RB1CC1_uc003xrf.3_Missense_Mutation_p.E1038G	NM_014781	NP_055596
CSMD3	114788	broad.mit.edu	37	8	113349858	113349858	+	Missense_Mutation	SNP	G	C	C			2011-2298:2012-322-T	g.chr8:113349858G>C	uc003ynu.2	-	43	6914	c.6755C>G	c.(6754-6756)CCA>CGA	p.P2252R	CSMD3_uc003yns.2_Missense_Mutation_p.P1454R|CSMD3_uc003ynt.2_Missense_Mutation_p.P2212R|CSMD3_uc011lhx.1_Missense_Mutation_p.P2148R|CSMD3_uc003ynw.1_5'UTR	NM_198123	NP_937756
TOP1MT	116447	broad.mit.edu	37	8	144405117	144405117	+	Intron	SNP	A	G	G	rs138039866	by1000genomes	2011-2298:2012-322-T	g.chr8:144405117A>G	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
HEATR7A	727957	broad.mit.edu	37	8	145288295	145288295	+	Intron	SNP	C	A	A	rs11779369		2011-2298:2012-322-T	g.chr8:145288295C>A	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
EHMT1	79813	broad.mit.edu	37	9	140615768	140615768	+	Intron	SNP	A	G	G			2011-2298:2012-322-T	g.chr9:140615768A>G	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
NKAP	79576	broad.mit.edu	37	X	119059416	119059416	+	Intron	SNP	C	T	T			2011-2298:2012-322-T	g.chrX:119059416C>T	uc004esh.2	-						NKAP_uc004esg.2_Intron	NM_024528	NP_078804
MEGF6	1953	broad.mit.edu	37	1	3500360	3500360	+	Intron	SNP	G	C	C			2011-2299:2012-1334-T	g.chr1:3500360G>C	uc001akl.2	-							NM_001409	NP_001400
ABCA4	24	broad.mit.edu	37	1	94548931	94548931	+	Missense_Mutation	SNP	C	T	T			2011-2299:2012-1334-T	g.chr1:94548931C>T	uc001dqh.2	-	7	939	c.835G>A	c.(835-837)GAT>AAT	p.D279N	ABCA4_uc010otn.1_Missense_Mutation_p.D279N	NM_000350	NP_000341
CDH23	64072	broad.mit.edu	37	10	73448824	73448824	+	Intron	SNP	G	T	T			2011-2299:2012-1334-T	g.chr10:73448824G>T	uc001jrx.3	+						CDH23_uc001jry.2_Intron|CDH23_uc001jrz.2_Intron	NM_022124	NP_071407
TSPAN9	10867	broad.mit.edu	37	12	3307245	3307245	+	Intron	SNP	G	C	C			2011-2299:2012-1334-T	g.chr12:3307245G>C	uc001qlp.2	+							NM_006675	NP_006666
PIK3C2G	5288	broad.mit.edu	37	12	18762450	18762450	+	Intron	SNP	A	C	C	rs2277328	by1000genomes	2011-2299:2012-1334-T	g.chr12:18762450A>C	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron|PIK3C2G_uc010sib.1_Intron|PIK3C2G_uc010sic.1_Intron	NM_004570	NP_004561
LMF1	64788	broad.mit.edu	37	16	908582	908582	+	Intron	SNP	C	T	T			2011-2299:2012-1334-T	g.chr16:908582C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
KLHDC4	54758	broad.mit.edu	37	16	87772300	87772300	+	Intron	SNP	A	G	G			2011-2299:2012-1334-T	g.chr16:87772300A>G	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
KLHDC4	54758	broad.mit.edu	37	16	87772648	87772648	+	Intron	SNP	T	C	C			2011-2299:2012-1334-T	g.chr16:87772648T>C	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
NCOR1	9611	broad.mit.edu	37	17	15989671	15989671	+	Silent	SNP	G	A	A			2011-2299:2012-1334-T	g.chr17:15989671G>A	uc002gpo.2	-	23	3342	c.3102C>T	c.(3100-3102)CCC>CCT	p.P1034P	NCOR1_uc002gpn.2_Silent_p.P1050P|NCOR1_uc002gpp.1_Silent_p.P941P|NCOR1_uc002gpq.1_Silent_p.P126P	NM_006311	NP_006302
PRKCA	5578	broad.mit.edu	37	17	64794792	64794792	+	Intron	SNP	A	G	G			2011-2299:2012-1334-T	g.chr17:64794792A>G	uc002jfp.1	+							NM_002737	NP_002728
RPTOR	57521	broad.mit.edu	37	17	78717843	78717843	+	Intron	SNP	T	C	C			2011-2299:2012-1334-T	g.chr17:78717843T>C	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78717850	78717850	+	Intron	SNP	C	T	T			2011-2299:2012-1334-T	g.chr17:78717850C>T	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78718239	78718239	+	Intron	SNP	C	T	T			2011-2299:2012-1334-T	g.chr17:78718239C>T	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
KIAA1468	57614	broad.mit.edu	37	18	59958847	59958847	+	Missense_Mutation	SNP	C	T	T			2011-2299:2012-1334-T	g.chr18:59958847C>T	uc002lil.2	+	27	3657	c.3442C>T	c.(3442-3444)CTC>TTC	p.L1148F	KIAA1468_uc010xel.1_Missense_Mutation_p.L1148F|KIAA1468_uc002lim.2_Missense_Mutation_p.L826F	NM_020854	NP_065905
ATP9B	374868	broad.mit.edu	37	18	77087809	77087809	+	Intron	SNP	G	A	A			2011-2299:2012-1334-T	g.chr18:77087809G>A	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
C18orf22	79863	broad.mit.edu	37	18	77833562	77833562	+	Intron	SNP	G	A	A			2011-2299:2012-1334-T	g.chr18:77833562G>A	uc010dri.1	+						uc002lnu.2_Intron		
U2AF2	11338	broad.mit.edu	37	19	56181851	56181851	+	Intron	SNP	G	C	C			2011-2299:2012-1334-T	g.chr19:56181851G>C	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
RMND5A	64795	broad.mit.edu	37	2	87641918	87641918	+	Intron	SNP	G	C	C			2011-2299:2012-1334-T	g.chr2:87641918G>C	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641985	87641985	+	Intron	SNP	C	T	T			2011-2299:2012-1334-T	g.chr2:87641985C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644457	87644457	+	Intron	SNP	C	T	T			2011-2299:2012-1334-T	g.chr2:87644457C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87656158	87656158	+	Intron	SNP	C	A	A			2011-2299:2012-1334-T	g.chr2:87656158C>A	uc002srs.3	+								
C20orf26	26074	broad.mit.edu	37	20	20338566	20338566	+	Intron	SNP	G	A	A			2011-2299:2012-1334-T	g.chr20:20338566G>A	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
BAGE2	85319	broad.mit.edu	37	21	11021038	11021038	+	Intron	SNP	T	A	A	rs144226131	by1000genomes	2011-2299:2012-1334-T	g.chr21:11021038T>A	uc002yit.1	-						TPTE_uc002yis.1_Intron	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11038700	11038700	+	Intron	SNP	T	A	A			2011-2299:2012-1334-T	g.chr21:11038700T>A	uc002yit.1	-						TPTE_uc002yis.1_Intron	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11049651	11049651	+	Intron	SNP	T	C	C	rs12329881	by1000genomes	2011-2299:2012-1334-T	g.chr21:11049651T>C	uc002yit.1	-							NM_182482	NP_872288
CEP72	55722	broad.mit.edu	37	5	650266	650266	+	Intron	SNP	G	A	A	rs141119533	by1000genomes	2011-2299:2012-1334-T	g.chr5:650266G>A	uc003jbf.2	+							NM_018140	NP_060610
NSD1	64324	broad.mit.edu	37	5	176693575	176693576	+	Intron	DNP	CT	TG	TG			2011-2299:2012-1334-T	g.chr5:176693575_176693576CT>TG	uc003mfr.3	+						NSD1_uc003mft.3_Intron|NSD1_uc003mfs.1_Intron|NSD1_uc011dfx.1_Intron	NM_022455	NP_071900
BPHL	670	broad.mit.edu	37	6	3146880	3146880	+	Intron	SNP	G	A	A			2011-2299:2012-1334-T	g.chr6:3146880G>A	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
SYNE1	23345	broad.mit.edu	37	6	152765647	152765647	+	Missense_Mutation	SNP	C	T	T	rs138915528		2011-2299:2012-1334-T	g.chr6:152765647C>T	uc010kiw.2	-	30	4338	c.3736G>A	c.(3736-3738)GAA>AAA	p.E1246K	SYNE1_uc003qot.3_Missense_Mutation_p.E1253K|SYNE1_uc003qou.3_Missense_Mutation_p.E1246K|SYNE1_uc010kjb.1_Missense_Mutation_p.E1229K|SYNE1_uc003qow.2_Missense_Mutation_p.E541K|SYNE1_uc003qox.1_Missense_Mutation_p.E762K	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169014616	169014616	+	Intron	SNP	G	T	T			2011-2299:2012-1334-T	g.chr6:169014616G>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169015447	169015447	+	Intron	SNP	A	G	G			2011-2299:2012-1334-T	g.chr6:169015447A>G	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
MLL3	58508	broad.mit.edu	37	7	151970695	151970695	+	Intron	SNP	A	T	T			2011-2299:2012-1334-T	g.chr7:151970695A>T	uc003wla.2	-							NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	157864065	157864065	+	Intron	SNP	G	A	A			2011-2299:2012-1334-T	g.chr7:157864065G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158144762	158144762	+	Intron	SNP	C	G	G			2011-2299:2012-1334-T	g.chr7:158144762C>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PBX3	5090	broad.mit.edu	37	9	128728325	128728325	+	3'UTR	SNP	C	A	A			2011-2299:2012-1334-T	g.chr9:128728325C>A	uc004bqb.2	+	9					PBX3_uc004bqc.2_3'UTR|PBX3_uc004bqd.2_3'UTR|PBX3_uc011lzw.1_3'UTR|PBX3_uc011lzx.1_3'UTR|PBX3_uc004bqe.2_3'UTR	NM_006195	NP_006186
NOTCH1	4851	broad.mit.edu	37	9	139392012	139392012	+	Intron	SNP	T	A	A			2011-2299:2012-1334-T	g.chr9:139392012T>A	uc004chz.2	-							NM_017617	NP_060087
HDX	139324	broad.mit.edu	37	X	83724103	83724103	+	Missense_Mutation	SNP	G	T	T			2011-2299:2012-1334-T	g.chrX:83724103G>T	uc004eek.1	-	3	737	c.628C>A	c.(628-630)CCT>ACT	p.P210T	HDX_uc011mqv.1_Missense_Mutation_p.P210T|HDX_uc004eel.1_Missense_Mutation_p.P152T	NM_144657	NP_653258
USP26	83844	broad.mit.edu	37	X	132160085	132160085	+	Missense_Mutation	SNP	C	T	T			2011-2299:2012-1334-T	g.chrX:132160085C>T	uc010nrm.1	-	6	2634	c.2164G>A	c.(2164-2166)GAA>AAA	p.E722K	USP26_uc011mvf.1_Missense_Mutation_p.E722K	NM_031907	NP_114113
SCNN1D	6339	broad.mit.edu	37	1	1224865	1224865	+	Intron	SNP	T	C	C			2011-2300:2012-321-T	g.chr1:1224865T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1225009	1225009	+	Intron	SNP	T	C	C			2011-2300:2012-321-T	g.chr1:1225009T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRKCZ	5590	broad.mit.edu	37	1	2054762	2054762	+	Intron	SNP	A	G	G			2011-2300:2012-321-T	g.chr1:2054762A>G	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron	NM_002744	NP_002735
KIAA0562	9731	broad.mit.edu	37	1	3741575	3741575	+	Intron	SNP	G	A	A			2011-2300:2012-321-T	g.chr1:3741575G>A	uc001aky.2	-						KIAA0562_uc010nzm.1_Intron	NM_014704	NP_055519
NBPF1	55672	broad.mit.edu	37	1	16892801	16892801	+	Intron	SNP	C	T	T			2011-2300:2012-321-T	g.chr1:16892801C>T	uc009vos.1	-						uc001ayw.2_5'Flank	NM_017940	NP_060410
NOTCH2	4853	broad.mit.edu	37	1	120471540	120471540	+	Intron	SNP	T	A	A			2011-2300:2012-321-T	g.chr1:120471540T>A	uc001eik.2	-							NM_024408	NP_077719
SMYD3	64754	broad.mit.edu	37	1	246139486	246139487	+	Intron	DNP	CG	TA	TA	rs149525810		2011-2300:2012-321-T	g.chr1:246139486_246139487CG>TA	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
OR51S1	119692	broad.mit.edu	37	11	4870501	4870501	+	5'Flank	SNP	C	T	T			2011-2300:2012-321-T	g.chr11:4870501C>T	uc010qyo.1	-							NM_001004758	NP_001004758
GPR133	283383	broad.mit.edu	37	12	131613841	131613841	+	Intron	SNP	G	A	A			2011-2300:2012-321-T	g.chr12:131613841G>A	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc009zyp.2_Intron	NM_198827	NP_942122
ATP11A	23250	broad.mit.edu	37	13	113527558	113527558	+	Intron	SNP	T	G	G	rs111370207		2011-2300:2012-321-T	g.chr13:113527558T>G	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc010ago.2_Intron	NM_015205	NP_056020
MCF2L	23263	broad.mit.edu	37	13	113665990	113665990	+	Intron	SNP	G	A	A	rs78098297	by1000genomes	2011-2300:2012-321-T	g.chr13:113665990G>A	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron	NM_001112732	NP_001106203
FAM179B	23116	broad.mit.edu	37	14	45537733	45537733	+	Missense_Mutation	SNP	C	G	G			2011-2300:2012-321-T	g.chr14:45537733C>G	uc001wvv.2	+	17	4906	c.4697C>G	c.(4696-4698)TCT>TGT	p.S1566C	FAM179B_uc001wvw.2_Missense_Mutation_p.S1619C|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906
SYNE2	23224	broad.mit.edu	37	14	64518309	64518309	+	Missense_Mutation	SNP	A	G	G			2011-2300:2012-321-T	g.chr14:64518309A>G	uc001xgm.2	+	48	7908	c.7678A>G	c.(7678-7680)ATT>GTT	p.I2560V	SYNE2_uc001xgl.2_Missense_Mutation_p.I2560V	NM_015180	NP_055995
NRXN3	9369	broad.mit.edu	37	14	80312049	80312049	+	Intron	SNP	C	G	G	rs71103829		2011-2300:2012-321-T	g.chr14:80312049C>G	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_Intron|NRXN3_uc001xuq.2_Intron|NRXN3_uc010asw.2_Intron|NRXN3_uc001xur.3_Intron	NM_004796	NP_004787
PPP4R4	57718	broad.mit.edu	37	14	94703955	94703955	+	Missense_Mutation	SNP	A	T	T			2011-2300:2012-321-T	g.chr14:94703955A>T	uc001ycs.1	+	8	939	c.785A>T	c.(784-786)GAT>GTT	p.D262V		NM_058237	NP_478144
RAB11FIP3	9727	broad.mit.edu	37	16	554301	554301	+	Intron	SNP	C	T	T			2011-2300:2012-321-T	g.chr16:554301C>T	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
P2RX5	5026	broad.mit.edu	37	17	3584101	3584101	+	Intron	SNP	A	G	G			2011-2300:2012-321-T	g.chr17:3584101A>G	uc002fwi.2	-						P2RX5_uc002fwd.2_Intron|P2RX5_uc002fwh.1_Intron|P2RX5_uc010vrx.1_Intron|P2RX5_uc002fwj.2_Intron|P2RX5_uc002fwk.2_Intron|P2RX5_uc002fwl.2_Intron	NM_002561	NP_002552
TP53	7157	broad.mit.edu	37	17	7578235	7578235	+	Missense_Mutation	SNP	T	C	C			2011-2300:2012-321-T	g.chr17:7578235T>C	uc002gim.2	-	6	808	c.614A>G	c.(613-615)TAT>TGT	p.Y205C	TP53_uc002gig.1_Missense_Mutation_p.Y205C|TP53_uc002gih.2_Missense_Mutation_p.Y205C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.Y73C|TP53_uc010cng.1_Missense_Mutation_p.Y73C|TP53_uc002gii.1_Missense_Mutation_p.Y73C|TP53_uc010cnh.1_Missense_Mutation_p.Y205C|TP53_uc010cni.1_Missense_Mutation_p.Y205C|TP53_uc002gij.2_Missense_Mutation_p.Y205C|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.Y112C|TP53_uc002gio.2_Missense_Mutation_p.Y73C|TP53_uc010vug.1_Missense_Mutation_p.Y166C	NM_001126112	NP_001119584
STAT3	6774	broad.mit.edu	37	17	40490499	40490499	+	Intron	SNP	G	T	T			2011-2300:2012-321-T	g.chr17:40490499G>T	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
SLC16A3	9123	broad.mit.edu	37	17	80212854	80212854	+	Intron	SNP	C	G	G			2011-2300:2012-321-T	g.chr17:80212854C>G	uc002kee.2	+						CSNK1D_uc002kef.2_Intron|CSNK1D_uc002kei.2_Intron|CSNK1D_uc002kej.2_Intron|CSNK1D_uc010wvj.1_Intron|CSNK1D_uc002keh.2_5'Flank|CSNK1D_uc010dim.1_5'Flank	NM_004207	NP_004198
DOK6	220164	broad.mit.edu	37	18	67365577	67365577	+	Intron	SNP	G	A	A	rs7241894	by1000genomes	2011-2300:2012-321-T	g.chr18:67365577G>A	uc002lkl.2	+							NM_152721	NP_689934
KEAP1	9817	broad.mit.edu	37	19	10610154	10610154	+	Missense_Mutation	SNP	C	T	T			2011-2300:2012-321-T	g.chr19:10610154C>T	uc002moq.1	-	2	712	c.556G>A	c.(556-558)GGC>AGC	p.G186S	KEAP1_uc002mor.1_Missense_Mutation_p.G186S	NM_012289	NP_036421
CACNG7	59284	broad.mit.edu	37	19	54424256	54424256	+	Intron	SNP	G	C	C			2011-2300:2012-321-T	g.chr19:54424256G>C	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
APOB	338	broad.mit.edu	37	2	21267314	21267314	+	5'Flank	SNP	C	T	T			2011-2300:2012-321-T	g.chr2:21267314C>T	uc002red.2	-							NM_000384	NP_000375
SLC3A1	6519	broad.mit.edu	37	2	44513714	44513714	+	Intron	SNP	C	T	T	rs74682360	by1000genomes	2011-2300:2012-321-T	g.chr2:44513714C>T	uc002ruc.3	+						SLC3A1_uc002rty.2_Intron|SLC3A1_uc002rtz.2_Intron|SLC3A1_uc002rua.2_Intron|SLC3A1_uc002rub.2_Intron|SLC3A1_uc002rud.3_Intron	NM_000341	NP_000332
FANCL	55120	broad.mit.edu	37	2	58425957	58425957	+	Intron	SNP	G	T	T			2011-2300:2012-321-T	g.chr2:58425957G>T	uc002rzw.3	-						FANCL_uc002rzx.3_Intron|FANCL_uc010fce.2_Intron|FANCL_uc010fcf.1_Intron	NM_018062	NP_060532
RMND5A	64795	broad.mit.edu	37	2	87633651	87633651	+	Intron	SNP	C	A	A			2011-2300:2012-321-T	g.chr2:87633651C>A	uc002srs.3	+								
MAP2	4133	broad.mit.edu	37	2	210561188	210561188	+	Intron	SNP	A	G	G			2011-2300:2012-321-T	g.chr2:210561188A>G	uc002vde.1	+						MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Intron	NM_002374	NP_002365
TAF4	6874	broad.mit.edu	37	20	60561559	60561559	+	Intron	SNP	T	C	C			2011-2300:2012-321-T	g.chr20:60561559T>C	uc002ybs.2	-							NM_003185	NP_003176
BAGE2	85319	broad.mit.edu	37	21	11021274	11021274	+	Intron	SNP	G	A	A	rs4627671		2011-2300:2012-321-T	g.chr21:11021274G>A	uc002yit.1	-						TPTE_uc002yis.1_Intron	NM_182482	NP_872288
TTLL8	164714	broad.mit.edu	37	22	50467744	50467744	+	Intron	SNP	G	A	A			2011-2300:2012-321-T	g.chr22:50467744G>A	uc011ark.1	-							NM_001080447	NP_001073916
TUBGCP6	85378	broad.mit.edu	37	22	50673692	50673692	+	Intron	SNP	C	T	T	rs2341369	by1000genomes	2011-2300:2012-321-T	g.chr22:50673692C>T	uc003bkb.1	-						TUBGCP6_uc010har.1_Intron|TUBGCP6_uc010has.1_Intron	NM_020461	NP_065194
SI	6476	broad.mit.edu	37	3	164772957	164772957	+	Intron	SNP	C	T	T	rs9290256	by1000genomes	2011-2300:2012-321-T	g.chr3:164772957C>T	uc003fei.2	-							NM_001041	NP_001032
SI	6476	broad.mit.edu	37	3	164796343	164796343	+	5'Flank	SNP	T	C	C	rs7629658	by1000genomes	2011-2300:2012-321-T	g.chr3:164796343T>C	uc003fei.2	-							NM_001041	NP_001032
LPP	4026	broad.mit.edu	37	3	187930770	187930770	+	5'UTR	SNP	C	T	T			2011-2300:2012-321-T	g.chr3:187930770C>T	uc003frs.1	+	1					LPP_uc011bsg.1_Intron	NM_005578	NP_005569
WHSC1	7468	broad.mit.edu	37	4	1944204	1944204	+	Intron	SNP	A	G	G			2011-2300:2012-321-T	g.chr4:1944204A>G	uc003gdz.3	+						WHSC1_uc003geb.3_Intron|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_Intron|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Intron|WHSC1_uc003gdy.1_3'UTR|WHSC1_uc010icd.1_3'UTR|WHSC1_uc003gea.1_3'UTR|WHSC1_uc010ice.1_3'UTR|WHSC1_uc003geh.1_3'UTR	NM_001042424	NP_001035889
WHSC1	7468	broad.mit.edu	37	4	1962765	1962765	+	Missense_Mutation	SNP	G	A	A			2011-2300:2012-321-T	g.chr4:1962765G>A	uc003gdz.3	+	18	3435	c.3259G>A	c.(3259-3261)GAA>AAA	p.E1087K	WHSC1_uc003geb.3_Missense_Mutation_p.E1087K|WHSC1_uc003gec.3_Missense_Mutation_p.E1087K|WHSC1_uc003ged.3_Missense_Mutation_p.E1087K|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Missense_Mutation_p.E306K|WHSC1_uc011bvh.1_Missense_Mutation_p.E148K|WHSC1_uc010icf.2_Missense_Mutation_p.E435K	NM_001042424	NP_001035889
INPP4B	8821	broad.mit.edu	37	4	143114329	143114329	+	Silent	SNP	G	A	A			2011-2300:2012-321-T	g.chr4:143114329G>A	uc003iix.3	-	16	1687	c.1092C>T	c.(1090-1092)ATC>ATT	p.I364I	INPP4B_uc003iiw.3_Silent_p.I364I|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Silent_p.I179I|INPP4B_uc011cho.1_RNA|INPP4B_uc011chp.1_Silent_p.I235I	NM_003866	NP_003857
MEF2C	4208	broad.mit.edu	37	5	88057119	88057119	+	Silent	SNP	G	A	A			2011-2300:2012-321-T	g.chr5:88057119G>A	uc003kjj.2	-	4	958	c.285C>T	c.(283-285)GGC>GGT	p.G95G	MEF2C_uc003kji.2_Silent_p.G95G|MEF2C_uc003kjk.2_Silent_p.G95G|MEF2C_uc003kjm.2_Intron|MEF2C_uc003kjl.2_Silent_p.G95G	NM_002397	NP_002388
HBS1L	10767	broad.mit.edu	37	6	135307850	135307850	+	Intron	SNP	C	T	T			2011-2300:2012-321-T	g.chr6:135307850C>T	uc003qez.2	-						HBS1L_uc003qey.2_Intron|HBS1L_uc011ecy.1_Intron|HBS1L_uc011ecz.1_Intron|HBS1L_uc011eda.1_Intron	NM_006620	NP_006611
SNX16	64089	broad.mit.edu	37	8	82754703	82754703	+	5'Flank	SNP	C	G	G			2011-2300:2012-321-T	g.chr8:82754703C>G	uc011lft.1	-						SNX16_uc003ycn.2_5'Flank|SNX16_uc003yco.2_5'Flank	NM_022133	NP_071416
ZFP41	286128	broad.mit.edu	37	8	144342202	144342202	+	3'UTR	SNP	G	C	C			2011-2300:2012-321-T	g.chr8:144342202G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
NOTCH1	4851	broad.mit.edu	37	9	139437859	139437859	+	Intron	SNP	G	T	T			2011-2300:2012-321-T	g.chr9:139437859G>T	uc004chz.2	-							NM_017617	NP_060087
KIAA2022	340533	broad.mit.edu	37	X	73959365	73959365	+	Intron	SNP	G	A	A			2011-2300:2012-321-T	g.chrX:73959365G>A	uc004eby.2	-							NM_001008537	NP_001008537
PRDM16	63976	broad.mit.edu	37	1	3186141	3186141	+	Intron	SNP	C	T	T	rs140793355	by1000genomes	2011-2301:2012-320-T	g.chr1:3186141C>T	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
KIF1B	23095	broad.mit.edu	37	1	10322054	10322054	+	Intron	SNP	G	A	A	rs4846209	by1000genomes	2011-2301:2012-320-T	g.chr1:10322054G>A	uc001aqx.3	+						KIF1B_uc001aqv.3_Intron|KIF1B_uc001aqw.3_Intron|KIF1B_uc001aqy.2_Intron|KIF1B_uc001aqz.2_Intron|KIF1B_uc001ara.2_Intron|KIF1B_uc001arb.2_Intron|KIF1B_uc009vmt.2_Intron	NM_015074	NP_055889
USH2A	7399	broad.mit.edu	37	1	216495400	216495400	+	Intron	SNP	A	G	G	rs2089947	by1000genomes	2011-2301:2012-320-T	g.chr1:216495400A>G	uc001hku.1	-						USH2A_uc001hkv.2_Intron	NM_206933	NP_996816
PARP1	142	broad.mit.edu	37	1	226550741	226550741	+	Intron	SNP	C	T	T	rs747659	byFrequency;by1000genomes	2011-2301:2012-320-T	g.chr1:226550741C>T	uc001hqd.3	-							NM_001618	NP_001609
SMYD3	64754	broad.mit.edu	37	1	246139343	246139343	+	Intron	SNP	A	G	G			2011-2301:2012-320-T	g.chr1:246139343A>G	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
CUBN	8029	broad.mit.edu	37	10	16866929	16866929	+	3'UTR	SNP	G	A	A	rs7085076	by1000genomes	2011-2301:2012-320-T	g.chr10:16866929G>A	uc001ioo.2	-	67						NM_001081	NP_001072
CUBN	8029	broad.mit.edu	37	10	17032281	17032281	+	Intron	SNP	C	T	T	rs2291521	by1000genomes	2011-2301:2012-320-T	g.chr10:17032281C>T	uc001ioo.2	-							NM_001081	NP_001072
ADAM12	8038	broad.mit.edu	37	10	127843756	127843756	+	Intron	SNP	G	A	A	rs1466360	by1000genomes	2011-2301:2012-320-T	g.chr10:127843756G>A	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
ADAM12	8038	broad.mit.edu	37	10	127843921	127843921	+	Intron	SNP	T	C	C	rs1466361	by1000genomes	2011-2301:2012-320-T	g.chr10:127843921T>C	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
OR4C15	81309	broad.mit.edu	37	11	55321513	55321513	+	5'Flank	SNP	T	C	C	rs492480	by1000genomes	2011-2301:2012-320-T	g.chr11:55321513T>C	uc010rig.1	+							NM_001001920	NP_001001920
MAML2	84441	broad.mit.edu	37	11	95724658	95724658	+	Intron	SNP	C	G	G	rs488398	by1000genomes	2011-2301:2012-320-T	g.chr11:95724658C>G	uc001pfw.1	-							NM_032427	NP_115803
B4GALNT3	283358	broad.mit.edu	37	12	622058	622058	+	Intron	SNP	T	G	G	rs28808123	by1000genomes	2011-2301:2012-320-T	g.chr12:622058T>G	uc001qii.1	+							NM_173593	NP_775864
FAM101A	144347	broad.mit.edu	37	12	124787351	124787351	+	Intron	SNP	T	C	C	rs61933972	by1000genomes	2011-2301:2012-320-T	g.chr12:124787351T>C	uc001ugd.1	+						FAM101A_uc001uge.1_Intron	NM_181709	NP_859060
DICER1	23405	broad.mit.edu	37	14	95600006	95600006	+	Intron	SNP	G	C	C	rs10139161	by1000genomes	2011-2301:2012-320-T	g.chr14:95600006G>C	uc001ydw.2	-						DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron|DICER1_uc001ydz.1_Intron|DICER1_uc001yea.1_Intron|DICER1_uc001yeb.1_Intron|DICER1_uc001yec.1_Intron	NM_030621	NP_085124
TLN2	83660	broad.mit.edu	37	15	62967342	62967342	+	Intron	SNP	A	G	G	rs1878785	by1000genomes	2011-2301:2012-320-T	g.chr15:62967342A>G	uc002alb.3	+							NM_015059	NP_055874
LMF1	64788	broad.mit.edu	37	16	999999	999999	+	Intron	SNP	C	T	T			2011-2301:2012-320-T	g.chr16:999999C>T	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000018	1000018	+	Intron	SNP	G	A	A			2011-2301:2012-320-T	g.chr16:1000018G>A	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
DNAH3	55567	broad.mit.edu	37	16	20986506	20986506	+	Intron	SNP	C	T	T	rs3115438	by1000genomes	2011-2301:2012-320-T	g.chr16:20986506C>T	uc010vbe.1	-						DNAH3_uc010vbd.1_Intron	NM_017539	NP_060009
PRKCB	5579	broad.mit.edu	37	16	24135112	24135112	+	Intron	SNP	T	C	C	rs1013316	by1000genomes	2011-2301:2012-320-T	g.chr16:24135112T>C	uc002dmd.2	+						PRKCB_uc002dme.2_Intron	NM_212535	NP_997700
CDH13	1012	broad.mit.edu	37	16	83691917	83691917	+	Intron	SNP	G	A	A			2011-2301:2012-320-T	g.chr16:83691917G>A	uc002fgx.2	+						CDH13_uc010vns.1_Intron|CDH13_uc010vnt.1_Intron|CDH13_uc010vnu.1_Intron	NM_001257	NP_001248
TP53	7157	broad.mit.edu	37	17	7579307	7579307	+	Intron	SNP	C	A	A			2011-2301:2012-320-T	g.chr17:7579307C>A	uc002gim.2	-						TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gij.2_Intron|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Intron	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7579472	7579472	+	Missense_Mutation	SNP	G	C	C	rs1042522	byFrequency;by1000genomes	2011-2301:2012-320-T	g.chr17:7579472G>C	uc002gim.2	-	4	409	c.215C>G	c.(214-216)CCC>CGC	p.P72R	TP53_uc002gig.1_Missense_Mutation_p.P72R|TP53_uc002gih.2_Missense_Mutation_p.P72R|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Missense_Mutation_p.P72R|TP53_uc010cni.1_Missense_Mutation_p.P72R|TP53_uc002gij.2_Missense_Mutation_p.P72R|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Missense_Mutation_p.P33R|TP53_uc010cnk.1_Missense_Mutation_p.P87R	NM_001126112	NP_001119584
PIK3R6	146850	broad.mit.edu	37	17	8739821	8739821	+	Intron	SNP	G	C	C	rs12948724	by1000genomes	2011-2301:2012-320-T	g.chr17:8739821G>C	uc002glq.1	-						PIK3R6_uc002glr.1_Intron|PIK3R6_uc002gls.1_Intron	NM_001010855	NP_001010855
PGAP3	93210	broad.mit.edu	37	17	37843859	37843859	+	Intron	SNP	G	A	A	rs2517956	by1000genomes	2011-2301:2012-320-T	g.chr17:37843859G>A	uc002hsj.2	-						ERBB2_uc002hsm.2_5'Flank|ERBB2_uc010cwa.2_5'Flank|PGAP3_uc010cvy.2_5'Flank|PGAP3_uc010wej.1_Intron|PGAP3_uc002hsk.2_Intron|PGAP3_uc010cvz.2_Intron|ERBB2_uc002hsl.2_5'Flank	NM_033419	NP_219487
BRCA1	672	broad.mit.edu	37	17	41219780	41219780	+	Intron	SNP	T	C	C	rs8176234	by1000genomes	2011-2301:2012-320-T	g.chr17:41219780T>C	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
BRCA1	672	broad.mit.edu	37	17	41276247	41276247	+	Intron	SNP	A	G	G	rs3765640	by1000genomes	2011-2301:2012-320-T	g.chr17:41276247A>G	uc002icq.2	-						BRCA1_uc010whp.1_Intron|NBR2_uc002idf.2_5'Flank|NBR2_uc010czb.1_5'Flank|NBR2_uc002idg.2_5'Flank|NBR2_uc002idh.2_5'Flank|BRCA1_uc010whl.1_5'Flank|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_5'Flank|BRCA1_uc010cyy.1_Intron|BRCA1_uc010whs.1_Intron|BRCA1_uc010cyz.2_Intron|BRCA1_uc010cza.2_Intron|BRCA1_uc010wht.1_Intron	NM_007294	NP_009225
PRKCA	5578	broad.mit.edu	37	17	64795614	64795614	+	Intron	SNP	G	A	A			2011-2301:2012-320-T	g.chr17:64795614G>A	uc002jfp.1	+							NM_002737	NP_002728
KIAA1468	57614	broad.mit.edu	37	18	59925938	59925938	+	Intron	SNP	G	A	A	rs3752093	by1000genomes	2011-2301:2012-320-T	g.chr18:59925938G>A	uc002lil.2	+						KIAA1468_uc002lik.1_Intron|KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
DSEL	92126	broad.mit.edu	37	18	65182392	65182392	+	5'UTR	SNP	T	C	C	rs2291172	by1000genomes	2011-2301:2012-320-T	g.chr18:65182392T>C	uc002lke.1	-	2						NM_032160	NP_115536
MYO1F	4542	broad.mit.edu	37	19	8608724	8608724	+	Intron	SNP	G	C	C			2011-2301:2012-320-T	g.chr19:8608724G>C	uc002mkg.2	-							NM_012335	NP_036467
NOTCH3	4854	broad.mit.edu	37	19	15292366	15292366	+	Intron	SNP	C	T	T	rs11669982	by1000genomes	2011-2301:2012-320-T	g.chr19:15292366C>T	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
LILRB2	10288	broad.mit.edu	37	19	54785013	54785013	+	5'UTR	SNP	T	A	A			2011-2301:2012-320-T	g.chr19:54785013T>A	uc002qfb.2	-	1					LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_5'Flank|LILRB2_uc010erj.2_5'Flank|LILRB2_uc002qfc.2_5'UTR|LILRB2_uc010yet.1_5'UTR|LILRB2_uc010yeu.1_5'Flank	NM_005874	NP_005865
RMND5A	64795	broad.mit.edu	37	2	87645997	87645997	+	Intron	SNP	A	G	G			2011-2301:2012-320-T	g.chr2:87645997A>G	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141260754	141260754	+	Intron	SNP	G	A	A	rs76928339	by1000genomes	2011-2301:2012-320-T	g.chr2:141260754G>A	uc002tvj.1	-							NM_018557	NP_061027
CHRNA4	1137	broad.mit.edu	37	20	61997581	61997581	+	Intron	SNP	A	G	G	rs66778029		2011-2301:2012-320-T	g.chr20:61997581A>G	uc002yet.1	-							NM_000744	NP_000735
MICAL3	57553	broad.mit.edu	37	22	18359888	18359888	+	Intron	SNP	G	C	C			2011-2301:2012-320-T	g.chr22:18359888G>C	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
PLEKHG4B	153478	broad.mit.edu	37	5	172971	172971	+	Intron	SNP	G	A	A	rs6868964	by1000genomes	2011-2301:2012-320-T	g.chr5:172971G>A	uc003jak.2	+							NM_052909	NP_443141
NUP43	348995	broad.mit.edu	37	6	150067675	150067675	+	5'UTR	SNP	A	G	G	rs10872646	by1000genomes	2011-2301:2012-320-T	g.chr6:150067675A>G	uc003qmz.2	-	1					NUP43_uc011eee.1_RNA|NUP43_uc011eef.1_5'UTR	NM_198887	NP_942590
SYNE1	23345	broad.mit.edu	37	6	152698123	152698123	+	Intron	SNP	C	G	G			2011-2301:2012-320-T	g.chr6:152698123C>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron|SYNE1_uc003qov.2_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169014404	169014404	+	Intron	SNP	C	T	T			2011-2301:2012-320-T	g.chr6:169014404C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
EGFR	1956	broad.mit.edu	37	7	55086212	55086212	+	5'Flank	SNP	A	C	C	rs759171	by1000genomes	2011-2301:2012-320-T	g.chr7:55086212A>C	uc003tqk.2	+						EGFR_uc003tqh.2_5'Flank|EGFR_uc003tqi.2_5'Flank|EGFR_uc003tqj.2_5'Flank|EGFR_uc010kzg.1_5'Flank	NM_005228	NP_005219
CNTNAP2	26047	broad.mit.edu	37	7	147674912	147674912	+	Intron	SNP	T	C	C	rs2373284	by1000genomes	2011-2301:2012-320-T	g.chr7:147674912T>C	uc003weu.1	+							NM_014141	NP_054860
PTPRN2	5799	broad.mit.edu	37	7	157388157	157388157	+	Intron	SNP	G	A	A	rs75482660	by1000genomes	2011-2301:2012-320-T	g.chr7:157388157G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157851370	157851370	+	Intron	SNP	A	G	G			2011-2301:2012-320-T	g.chr7:157851370A>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157863833	157863833	+	Intron	SNP	G	A	A	rs138755397	by1000genomes	2011-2301:2012-320-T	g.chr7:157863833G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157864218	157864218	+	Intron	SNP	A	G	G	rs115685233	by1000genomes	2011-2301:2012-320-T	g.chr7:157864218A>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
UBR5	51366	broad.mit.edu	37	8	103297304	103297304	+	Intron	SNP	G	C	C			2011-2301:2012-320-T	g.chr8:103297304G>C	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
CSMD3	114788	broad.mit.edu	37	8	113418777	113418778	+	Missense_Mutation	DNP	TC	AA	AA			2011-2301:2012-320-T	g.chr8:113418777_113418778TC>AA	uc003ynu.2	-	35	5943_5944	c.5784_5785GA>TT	c.(5782-5787)TGGAAT>TGTTAT	p.1928_1929WN>CY	CSMD3_uc003yns.2_Missense_Mutation_p.1130_1131WN>CY|CSMD3_uc003ynt.2_Missense_Mutation_p.1888_1889WN>CY|CSMD3_uc011lhx.1_Missense_Mutation_p.1824_1825WN>CY	NM_198123	NP_937756
ENPP2	5168	broad.mit.edu	37	8	120651087	120651087	+	5'UTR	SNP	G	A	A			2011-2301:2012-320-T	g.chr8:120651087G>A	uc003yot.1	-	1					ENPP2_uc003yos.1_5'UTR|ENPP2_uc010mdd.1_5'UTR	NM_001040092	NP_001035181
AP2A2	161	broad.mit.edu	37	11	991068	991068	+	Intron	SNP	G	T	T	rs112707551		2011-2302:2012-314-T	g.chr11:991068G>T	uc001lss.2	+						AP2A2_uc001lst.1_Intron|AP2A2_uc009yco.1_Intron|AP2A2_uc009ycq.1_5'Flank	NM_012305	NP_036437
MACROD1	28992	broad.mit.edu	37	11	63778169	63778169	+	Intron	SNP	A	G	G	rs35492216	by1000genomes	2011-2302:2012-314-T	g.chr11:63778169A>G	uc001nyh.2	-							NM_014067	NP_054786
TPCN2	219931	broad.mit.edu	37	11	68843990	68843990	+	Intron	SNP	G	A	A	rs35306535	by1000genomes	2011-2302:2012-314-T	g.chr11:68843990G>A	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_Intron	NM_139075	NP_620714
ABCA12	26154	broad.mit.edu	37	2	215868978	215868978	+	Missense_Mutation	SNP	C	T	T	rs146002078	byFrequency	2011-2302:2012-314-T	g.chr2:215868978C>T	uc002vew.2	-	20	2858	c.2638G>A	c.(2638-2640)GTG>ATG	p.V880M	ABCA12_uc002vev.2_Missense_Mutation_p.V562M|ABCA12_uc010zjn.1_Translation_Start_Site	NM_173076	NP_775099
MLF1	4291	broad.mit.edu	37	3	158310153	158310153	+	Intron	SNP	A	G	G	rs6771248	by1000genomes	2011-2302:2012-314-T	g.chr3:158310153A>G	uc003fcb.2	+						MLF1_uc003fbz.2_Intron|MLF1_uc003fca.2_Intron|MLF1_uc003fbx.2_Intron|MLF1_uc003fcc.2_Intron|MLF1_uc003fby.2_Intron|MLF1_uc010hvx.2_Intron	NM_022443	NP_071888
DNAH5	1767	broad.mit.edu	37	5	13850739	13850739	+	Intron	SNP	T	A	A	rs4701988	by1000genomes	2011-2302:2012-314-T	g.chr5:13850739T>A	uc003jfd.2	-							NM_001369	NP_001360
DLGAP2	9228	broad.mit.edu	37	8	1571574	1571574	+	Intron	SNP	C	T	T	rs34951699	by1000genomes	2011-2302:2012-314-T	g.chr8:1571574C>T	uc003wpl.2	+						DLGAP2_uc003wpm.2_Intron|uc003wpn.1_5'Flank	NM_004745	NP_004736
DPYS	1807	broad.mit.edu	37	8	105463593	105463593	+	Missense_Mutation	SNP	C	T	T			2011-2302:2012-314-T	g.chr8:105463593C>T	uc003yly.3	-	2	433	c.304G>A	c.(304-306)GCC>ACC	p.A102T		NM_001385	NP_001376
BAI1	575	broad.mit.edu	37	8	143597744	143597744	+	Intron	SNP	G	A	A	rs35665724	by1000genomes	2011-2302:2012-314-T	g.chr8:143597744G>A	uc003ywm.2	+							NM_001702	NP_001693
PIK3CD	5293	broad.mit.edu	37	1	9711487	9711487	+	5'Flank	SNP	T	C	C	rs7518793	by1000genomes	2011-2303:2012-1323-T	g.chr1:9711487T>C	uc001aqb.3	+						PIK3CD_uc001aqa.2_5'Flank	NM_005026	NP_005017
PIK3CD	5293	broad.mit.edu	37	1	9711642	9711642	+	5'Flank	SNP	A	G	G	rs7516138	by1000genomes	2011-2303:2012-1323-T	g.chr1:9711642A>G	uc001aqb.3	+						PIK3CD_uc001aqa.2_5'Flank	NM_005026	NP_005017
PIK3CD	5293	broad.mit.edu	37	1	9711674	9711674	+	5'Flank	SNP	A	G	G	rs7516214	by1000genomes	2011-2303:2012-1323-T	g.chr1:9711674A>G	uc001aqb.3	+						PIK3CD_uc001aqa.2_5'Flank	NM_005026	NP_005017
MCOLN2	255231	broad.mit.edu	37	1	85397286	85397286	+	Intron	SNP	G	C	C	rs34793286	by1000genomes	2011-2303:2012-1323-T	g.chr1:85397286G>C	uc001dkm.2	-						MCOLN2_uc001dkn.2_Intron	NM_153259	NP_694991
NOS1AP	9722	broad.mit.edu	37	1	162332521	162332521	+	Intron	SNP	T	A	A	rs17428733	by1000genomes	2011-2303:2012-1323-T	g.chr1:162332521T>A	uc001gbv.2	+						NOS1AP_uc010pks.1_Intron|NOS1AP_uc001gbw.2_Intron|NOS1AP_uc009wut.1_5'Flank	NM_014697	NP_055512
C1orf125	126859	broad.mit.edu	37	1	179497440	179497440	+	Intron	SNP	T	A	A			2011-2303:2012-1323-T	g.chr1:179497440T>A	uc001gmo.2	+						C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron	NM_144696	NP_653297
ADARB2	105	broad.mit.edu	37	10	1369508	1369508	+	Intron	SNP	A	G	G			2011-2303:2012-1323-T	g.chr10:1369508A>G	uc009xhq.2	-							NM_018702	NP_061172
MUC2	4583	broad.mit.edu	37	11	1085304	1085304	+	Intron	SNP	C	A	A	rs137992395	by1000genomes	2011-2303:2012-1323-T	g.chr11:1085304C>A	uc001lsx.1	+							NM_002457	NP_002448
MTA2	9219	broad.mit.edu	37	11	62362293	62362293	+	Intron	SNP	A	G	G	rs11231154	by1000genomes	2011-2303:2012-1323-T	g.chr11:62362293A>G	uc001ntq.1	-						MTA2_uc010rlx.1_Intron	NM_004739	NP_004730
MCF2L	23263	broad.mit.edu	37	13	113667187	113667187	+	Intron	SNP	A	T	T	rs9577191		2011-2303:2012-1323-T	g.chr13:113667187A>T	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron	NM_001112732	NP_001106203
SYNE2	23224	broad.mit.edu	37	14	64548132	64548132	+	Intron	SNP	C	G	G	rs17101624	by1000genomes	2011-2303:2012-1323-T	g.chr14:64548132C>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apx.1_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64568636	64568636	+	Intron	SNP	G	T	T	rs77622144	by1000genomes	2011-2303:2012-1323-T	g.chr14:64568636G>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64568832	64568832	+	Intron	SNP	C	T	T	rs78468258	by1000genomes	2011-2303:2012-1323-T	g.chr14:64568832C>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
INF2	64423	broad.mit.edu	37	14	105239192	105239192	+	Intron	SNP	T	C	C	rs2494732	byFrequency;by1000genomes	2011-2303:2012-1323-T	g.chr14:105239192T>C	uc010tyi.1	+						AKT1_uc001ypk.2_Intron|AKT1_uc001ypl.2_Intron|AKT1_uc010axa.2_Intron|AKT1_uc001ypm.2_Intron|AKT1_uc001ypn.2_Intron|AKT1_uc001ypj.2_5'Flank|AKT1_uc010tyk.1_Intron	NM_022489	NP_071934
ZNF276	92822	broad.mit.edu	37	16	89805261	89805261	+	3'UTR	SNP	A	G	G	rs1800359	byFrequency;by1000genomes	2011-2303:2012-1323-T	g.chr16:89805261A>G	uc002fos.3	+	11					ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|FANCA_uc002fou.1_Intron|FANCA_uc010vpn.1_Intron	NM_001113525	NP_001106997
COL1A1	1277	broad.mit.edu	37	17	48263903	48263903	+	Intron	SNP	A	G	G	rs2277632	by1000genomes	2011-2303:2012-1323-T	g.chr17:48263903A>G	uc002iqm.2	-							NM_000088	NP_000079
MXRA7	439921	broad.mit.edu	37	17	74702510	74702510	+	Intron	SNP	A	G	G	rs62085152	by1000genomes	2011-2303:2012-1323-T	g.chr17:74702510A>G	uc002jsk.1	-						MXRA7_uc002jsl.2_Intron|MXRA7_uc002jsm.2_Intron	NM_001008528	NP_001008528
LAMA1	284217	broad.mit.edu	37	18	6992509	6992509	+	Intron	SNP	C	T	T	rs7243349	by1000genomes	2011-2303:2012-1323-T	g.chr18:6992509C>T	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
ZNF813	126017	broad.mit.edu	37	19	54006848	54006848	+	Intron	SNP	G	C	C	rs11880610	by1000genomes	2011-2303:2012-1323-T	g.chr19:54006848G>C	uc010eqq.1	+						uc002qbv.2_RNA		
LILRB2	10288	broad.mit.edu	37	19	54784898	54784898	+	5'UTR	SNP	A	C	C	rs13345054	by1000genomes	2011-2303:2012-1323-T	g.chr19:54784898A>C	uc002qfb.2	-	1					LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_5'Flank|LILRB2_uc010erj.2_5'Flank|LILRB2_uc002qfc.2_5'UTR|LILRB2_uc010yet.1_5'UTR|LILRB2_uc010yeu.1_5'Flank	NM_005874	NP_005865
LILRB2	10288	broad.mit.edu	37	19	54784908	54784908	+	Translation_Start_Site	SNP	C	A	A	rs13345069	by1000genomes	2011-2303:2012-1323-T	g.chr19:54784908C>A	uc002qfb.2	-	1	126	c.-140G>T	c.(-142--138)GAGGC>GATGC		LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_5'Flank|LILRB2_uc010erj.2_5'Flank|LILRB2_uc002qfc.2_Translation_Start_Site|LILRB2_uc010yet.1_Translation_Start_Site|LILRB2_uc010yeu.1_5'Flank	NM_005874	NP_005865
LRP1B	53353	broad.mit.edu	37	2	141299317	141299317	+	Intron	SNP	A	G	G	rs9287535	by1000genomes	2011-2303:2012-1323-T	g.chr2:141299317A>G	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	142889154	142889154	+	5'UTR	SNP	C	A	A	rs10211565	by1000genomes	2011-2303:2012-1323-T	g.chr2:142889154C>A	uc002tvj.1	-	1					LRP1B_uc010fnl.1_5'UTR	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179588272	179588272	+	Silent	SNP	G	T	T			2011-2303:2012-1323-T	g.chr2:179588272G>T	uc010zfg.1	-	71	18047	c.17823C>A	c.(17821-17823)ATC>ATA	p.I5941I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I2602I	NM_133378	NP_596869
RIPK4	54101	broad.mit.edu	37	21	43166626	43166626	+	Intron	SNP	T	G	G	rs8133138	by1000genomes	2011-2303:2012-1323-T	g.chr21:43166626T>G	uc002yzn.1	-							NM_020639	NP_065690
C21orf56	84221	broad.mit.edu	37	21	47603413	47603413	+	5'UTR	SNP	A	G	G	rs56293013	by1000genomes	2011-2303:2012-1323-T	g.chr21:47603413A>G	uc011afu.1	-	2					C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
XRCC6	2547	broad.mit.edu	37	22	42017264	42017264	+	5'Flank	SNP	A	G	G	rs132770	by1000genomes	2011-2303:2012-1323-T	g.chr22:42017264A>G	uc003bao.1	+						PPPDE2_uc003ban.1_5'Flank|PPPDE2_uc011apb.1_5'Flank|XRCC6_uc003bap.1_5'Flank|XRCC6_uc011apc.1_5'Flank|XRCC6_uc003baq.1_5'Flank|XRCC6_uc003bar.1_5'Flank|XRCC6_uc003bas.1_5'Flank	NM_001469	NP_001460
XPC	7508	broad.mit.edu	37	3	14190268	14190268	+	Intron	SNP	G	C	C	rs2470353	byFrequency;by1000genomes	2011-2303:2012-1323-T	g.chr3:14190268G>C	uc011ave.1	-						XPC_uc011avf.1_Intron|XPC_uc011avg.1_Intron	NM_004628	NP_004619
IFT122	55764	broad.mit.edu	37	3	129235568	129235568	+	Intron	SNP	C	G	G	rs142458922	by1000genomes	2011-2303:2012-1323-T	g.chr3:129235568C>G	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
ZIC4	84107	broad.mit.edu	37	3	147109829	147109829	+	Intron	SNP	T	C	C	rs58262807	by1000genomes	2011-2303:2012-1323-T	g.chr3:147109829T>C	uc003ewd.1	-						ZIC4_uc003ewc.1_Intron|ZIC4_uc011bno.1_Intron	NM_032153	NP_115529
PIK3CA	5290	broad.mit.edu	37	3	178938866	178938866	+	Missense_Mutation	SNP	A	G	G			2011-2303:2012-1323-T	g.chr3:178938866A>G	uc003fjk.2	+	14	2265	c.2108A>G	c.(2107-2109)AAT>AGT	p.N703S		NM_006218	NP_006209
AFAP1	60312	broad.mit.edu	37	4	7800104	7800104	+	Intron	SNP	G	A	A	rs113569350	by1000genomes	2011-2303:2012-1323-T	g.chr4:7800104G>A	uc003gkg.1	-						AFAP1_uc011bwk.1_Intron	NM_198595	NP_940997
HLA-G	3135	broad.mit.edu	37	6	29975453	29975453	+	Intron	SNP	C	A	A	rs2240619		2011-2303:2012-1323-T	g.chr6:29975453C>A	uc011dmb.1	+						NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_Intron|HLA-J_uc003rtl.3_Intron|HLA-J_uc003nov.3_Intron	NM_002127	NP_002118
PARK2	5071	broad.mit.edu	37	6	162365101	162365101	+	Intron	SNP	G	A	A	rs111680434	by1000genomes	2011-2303:2012-1323-T	g.chr6:162365101G>A	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron	NM_004562	NP_004553
PARK2	5071	broad.mit.edu	37	6	162365166	162365166	+	Intron	SNP	G	A	A	rs5011907	by1000genomes	2011-2303:2012-1323-T	g.chr6:162365166G>A	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron	NM_004562	NP_004553
PMS2	5395	broad.mit.edu	37	7	6048845	6048845	+	5'Flank	SNP	A	G	G	rs2302336	by1000genomes	2011-2303:2012-1323-T	g.chr7:6048845A>G	uc003spl.2	-						PMS2_uc003spk.2_5'Flank|PMS2_uc011jwl.1_5'Flank|PMS2_uc010ktg.2_5'Flank|PMS2_uc010kte.2_5'Flank|PMS2_uc010ktf.1_5'Flank|AIMP2_uc003spo.2_5'Flank	NM_000535	NP_000526
PLEC	5339	broad.mit.edu	37	8	145010305	145010305	+	Intron	SNP	A	G	G	rs6988767	by1000genomes	2011-2303:2012-1323-T	g.chr8:145010305A>G	uc003zaf.1	-						PLEC_uc003zab.1_Intron|PLEC_uc003zac.1_Intron|PLEC_uc003zad.2_Intron|PLEC_uc003zae.1_Intron|PLEC_uc003zag.1_Intron|PLEC_uc003zah.2_Intron|PLEC_uc003zaj.2_Intron	NM_201380	NP_958782
PLEC	5339	broad.mit.edu	37	8	145012777	145012777	+	Intron	SNP	C	G	G	rs7823393	by1000genomes	2011-2303:2012-1323-T	g.chr8:145012777C>G	uc003zaf.1	-						PLEC_uc003zab.1_Intron|PLEC_uc003zac.1_Intron|PLEC_uc003zad.2_Intron|PLEC_uc003zae.1_Intron|PLEC_uc003zag.1_Intron|PLEC_uc003zah.2_Intron|PLEC_uc003zaj.2_Intron	NM_201380	NP_958782
PLEC	5339	broad.mit.edu	37	8	145025298	145025298	+	5'Flank	SNP	C	T	T	rs34952598		2011-2303:2012-1323-T	g.chr8:145025298C>T	uc003zaf.1	-						PLEC_uc003zag.1_Intron|PLEC_uc003zah.2_Intron|PLEC_uc003zaj.2_Intron	NM_201380	NP_958782
ENTPD2	954	broad.mit.edu	37	9	139944496	139944496	+	Intron	SNP	T	C	C	rs10870169	by1000genomes	2011-2303:2012-1323-T	g.chr9:139944496T>C	uc004ckw.1	-						ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Intron	NM_203468	NP_982293
ENTPD2	954	broad.mit.edu	37	9	139944509	139944509	+	Intron	SNP	T	C	C	rs10735661	by1000genomes	2011-2303:2012-1323-T	g.chr9:139944509T>C	uc004ckw.1	-						ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Intron	NM_203468	NP_982293
ENTPD2	954	broad.mit.edu	37	9	139944588	139944588	+	Intron	SNP	T	C	C	rs7869655	by1000genomes	2011-2303:2012-1323-T	g.chr9:139944588T>C	uc004ckw.1	-						ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Intron	NM_203468	NP_982293
NOTCH2	4853	broad.mit.edu	37	1	120478161	120478161	+	Nonsense_Mutation	SNP	G	A	A			2011-2304:2012-319-T	g.chr1:120478161G>A	uc001eik.2	-	22	3845	c.3589C>T	c.(3589-3591)CAG>TAG	p.Q1197*	NOTCH2_uc001eil.2_Nonsense_Mutation_p.Q1197*	NM_024408	NP_077719
HRAS	3265	broad.mit.edu	37	11	534285	534285	+	Missense_Mutation	SNP	C	A	A	rs104894226		2011-2304:2012-319-T	g.chr11:534285C>A	uc001lpv.2	-	2	226	c.38G>T	c.(37-39)GGT>GTT	p.G13V	HRAS_uc010qvw.1_Missense_Mutation_p.G13V|HRAS_uc010qvx.1_Missense_Mutation_p.G13V|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334
TDRD3	81550	broad.mit.edu	37	13	61034465	61034465	+	Intron	SNP	T	C	C			2011-2304:2012-319-T	g.chr13:61034465T>C	uc001via.2	+						TDRD3_uc010aef.2_Intron|TDRD3_uc001vhz.3_Intron|TDRD3_uc010aeg.2_Intron|TDRD3_uc001vib.3_Intron	NM_030794	NP_110421
PHKB	5257	broad.mit.edu	37	16	47545625	47545625	+	Missense_Mutation	SNP	T	A	A			2011-2304:2012-319-T	g.chr16:47545625T>A	uc002eev.3	+	5	507	c.455T>A	c.(454-456)GTT>GAT	p.V152D	PHKB_uc010vgi.1_Missense_Mutation_p.V145D|PHKB_uc002eeu.3_Missense_Mutation_p.V145D	NM_000293	NP_000284
ABCA9	10350	broad.mit.edu	37	17	67057608	67057608	+	5'Flank	SNP	G	A	A			2011-2304:2012-319-T	g.chr17:67057608G>A	uc002jhu.2	-						ABCA9_uc002jhv.2_5'Flank	NM_080283	NP_525022
ABCA9	10350	broad.mit.edu	37	17	67057631	67057631	+	5'Flank	SNP	C	T	T			2011-2304:2012-319-T	g.chr17:67057631C>T	uc002jhu.2	-						ABCA9_uc002jhv.2_5'Flank	NM_080283	NP_525022
CASP8	841	broad.mit.edu	37	2	202141549	202141549	+	Splice_Site	SNP	G	A	A			2011-2304:2012-319-T	g.chr2:202141549G>A	uc002uxr.1	+	8	870	c.661_splice	c.e8-1	p.T221_splice	CASP8_uc002uxo.1_Splice_Site_p.D199_splice|CASP8_uc002uxp.1_Splice_Site_p.T238_splice|CASP8_uc002uxq.1_Splice_Site_p.T206_splice|CASP8_uc002uxt.1_Splice_Site_p.T280_splice|CASP8_uc002uxu.1_Splice_Site|CASP8_uc002uxv.1_Splice_Site_p.T206_splice|CASP8_uc002uxw.1_Splice_Site_p.T206_splice|CASP8_uc002uxy.1_Splice_Site_p.T221_splice|CASP8_uc002uxx.1_Splice_Site_p.T206_splice|CASP8_uc010ftf.2_Intron|CASP8_uc010fte.1_Splice_Site_p.D81_splice	NM_033355	NP_203519
ATIC	471	broad.mit.edu	37	2	216214428	216214428	+	3'UTR	SNP	C	T	T			2011-2304:2012-319-T	g.chr2:216214428C>T	uc002vex.3	+	16					ATIC_uc010zjo.1_3'UTR|ATIC_uc002vey.3_3'UTR	NM_004044	NP_004035
C20orf26	26074	broad.mit.edu	37	20	20336837	20336837	+	Intron	SNP	G	A	A			2011-2304:2012-319-T	g.chr20:20336837G>A	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
NCOA3	8202	broad.mit.edu	37	20	46279897	46279897	+	Nonsense_Mutation	SNP	C	T	T			2011-2304:2012-319-T	g.chr20:46279897C>T	uc002xtk.2	+	20	4028	c.3823C>T	c.(3823-3825)CAG>TAG	p.Q1275*	NCOA3_uc010ght.1_Nonsense_Mutation_p.Q1266*|NCOA3_uc002xtl.2_Nonsense_Mutation_p.Q1271*|NCOA3_uc002xtm.2_Nonsense_Mutation_p.Q1270*|NCOA3_uc002xtn.2_Nonsense_Mutation_p.Q1274*|NCOA3_uc010zyc.1_Nonsense_Mutation_p.Q1070*	NM_181659	NP_858045
FAT1	2195	broad.mit.edu	37	4	187628298	187628298	+	Missense_Mutation	SNP	A	G	G			2011-2304:2012-319-T	g.chr4:187628298A>G	uc003izf.2	-	2	2872	c.2684T>C	c.(2683-2685)ATT>ACT	p.I895T	FAT1_uc010iso.1_Missense_Mutation_p.I895T	NM_005245	NP_005236
WRN	7486	broad.mit.edu	37	8	31014896	31014896	+	Missense_Mutation	SNP	G	C	C			2011-2304:2012-319-T	g.chr8:31014896G>C	uc003xio.3	+	33	4620	c.3832G>C	c.(3832-3834)GAG>CAG	p.E1278Q	WRN_uc010lvk.2_Missense_Mutation_p.E745Q	NM_000553	NP_000544
SCNN1D	6339	broad.mit.edu	37	1	1223780	1223780	+	Intron	SNP	G	C	C			2011-2305:2012-313-T	g.chr1:1223780G>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
ABL2	27	broad.mit.edu	37	1	179077568	179077568	+	Missense_Mutation	SNP	T	C	C			2011-2305:2012-313-T	g.chr1:179077568T>C	uc001gmj.3	-	12	3121	c.2834A>G	c.(2833-2835)GAC>GGC	p.D945G	ABL2_uc010pnf.1_Missense_Mutation_p.D842G|ABL2_uc010png.1_Missense_Mutation_p.D821G|ABL2_uc010pnh.1_Missense_Mutation_p.D924G|ABL2_uc001gmg.3_Missense_Mutation_p.D827G|ABL2_uc001gmi.3_Missense_Mutation_p.D930G|ABL2_uc001gmh.3_Missense_Mutation_p.D909G|ABL2_uc010pne.1_Missense_Mutation_p.D806G	NM_007314	NP_009298
RYR2	6262	broad.mit.edu	37	1	237219690	237219690	+	Intron	SNP	G	A	A			2011-2305:2012-313-T	g.chr1:237219690G>A	uc001hyl.1	+							NM_001035	NP_001026
RYR2	6262	broad.mit.edu	37	1	237219731	237219731	+	Intron	SNP	T	C	C	rs35966328		2011-2305:2012-313-T	g.chr1:237219731T>C	uc001hyl.1	+							NM_001035	NP_001026
PRDM11	56981	broad.mit.edu	37	11	45246070	45246070	+	Missense_Mutation	SNP	A	G	G			2011-2305:2012-313-T	g.chr11:45246070A>G	uc001myo.2	+	8	1396	c.1147A>G	c.(1147-1149)ATG>GTG	p.M383V		NM_020229	NP_064614
GPR133	283383	broad.mit.edu	37	12	131613783	131613783	+	Intron	SNP	G	C	C			2011-2305:2012-313-T	g.chr12:131613783G>C	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc009zyp.2_Intron	NM_198827	NP_942122
COL4A1	1282	broad.mit.edu	37	13	110908130	110908130	+	Intron	SNP	G	A	A			2011-2305:2012-313-T	g.chr13:110908130G>A	uc001vqw.3	-						COL4A1_uc010agl.2_Intron	NM_001845	NP_001836
FOXN3	1112	broad.mit.edu	37	14	89828519	89828519	+	Intron	SNP	C	T	T			2011-2305:2012-313-T	g.chr14:89828519C>T	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
WDR25	79446	broad.mit.edu	37	14	100993139	100993139	+	Intron	SNP	C	G	G	rs77172847		2011-2305:2012-313-T	g.chr14:100993139C>G	uc010avx.2	+						WDR25_uc001yhm.2_Intron|WDR25_uc001yhn.2_Intron|WDR25_uc010avy.2_Intron|WDR25_uc001yho.2_Intron	NM_001161476	NP_001154948
RAB11FIP3	9727	broad.mit.edu	37	16	544885	544885	+	Intron	SNP	A	T	T	rs8051090	by1000genomes	2011-2305:2012-313-T	g.chr16:544885A>T	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
ABR	29	broad.mit.edu	37	17	1022622	1022622	+	Intron	SNP	T	A	A			2011-2305:2012-313-T	g.chr17:1022622T>A	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
TP53	7157	broad.mit.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	T	T	rs28934576	by1000genomes	2011-2305:2012-313-T	g.chr17:7577120C>T	uc002gim.2	-	8	1012	c.818G>A	c.(817-819)CGT>CAT	p.R273H	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141H|TP53_uc010cng.1_Missense_Mutation_p.R141H|TP53_uc002gii.1_Missense_Mutation_p.R141H|TP53_uc010cnh.1_Missense_Mutation_p.R273H|TP53_uc010cni.1_Missense_Mutation_p.R273H|TP53_uc002gij.2_Missense_Mutation_p.R273H	NM_001126112	NP_001119584
STAT3	6774	broad.mit.edu	37	17	40490019	40490019	+	Intron	SNP	T	G	G	rs71367911		2011-2305:2012-313-T	g.chr17:40490019T>G	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
MXRA7	439921	broad.mit.edu	37	17	74702399	74702399	+	Intron	SNP	A	G	G	rs35026044	by1000genomes	2011-2305:2012-313-T	g.chr17:74702399A>G	uc002jsk.1	-						MXRA7_uc002jsl.2_Intron|MXRA7_uc002jsm.2_Intron	NM_001008528	NP_001008528
LAMA1	284217	broad.mit.edu	37	18	6992509	6992509	+	Intron	SNP	C	T	T	rs7243349	by1000genomes	2011-2305:2012-313-T	g.chr18:6992509C>T	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
MBP	4155	broad.mit.edu	37	18	74749252	74749252	+	Intron	SNP	G	A	A	rs116665438	by1000genomes	2011-2305:2012-313-T	g.chr18:74749252G>A	uc010xfd.1	-						MBP_uc002lmr.2_Intron	NM_001025101	NP_001020272
ATP9B	374868	broad.mit.edu	37	18	76906424	76906424	+	Intron	SNP	T	C	C			2011-2305:2012-313-T	g.chr18:76906424T>C	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmy.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
TCF3	6929	broad.mit.edu	37	19	1628326	1628326	+	Intron	SNP	A	G	G			2011-2305:2012-313-T	g.chr19:1628326A>G	uc002ltr.2	-						TCF3_uc002ltt.3_Intron|TCF3_uc002ltq.2_Intron|TCF3_uc002lts.1_Intron	NM_003200	NP_003191
ZNF331	55422	broad.mit.edu	37	19	54025201	54025201	+	5'UTR	SNP	A	G	G	rs8100247	by1000genomes	2011-2305:2012-313-T	g.chr19:54025201A>G	uc002qbx.1	+	1					ZNF331_uc002qbw.1_RNA|ZNF331_uc002qby.1_5'UTR|ZNF331_uc002qbz.1_5'UTR	NM_018555	NP_061025
PXDN	7837	broad.mit.edu	37	2	1707362	1707362	+	Intron	SNP	G	A	A			2011-2305:2012-313-T	g.chr2:1707362G>A	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
C2orf65	130951	broad.mit.edu	37	2	74788359	74788359	+	Intron	SNP	A	G	G			2011-2305:2012-313-T	g.chr2:74788359A>G	uc002smy.2	-						C2orf65_uc010ysa.1_Intron|C2orf65_uc010ffp.2_Intron|C2orf65_uc002smx.2_Intron	NM_138804	NP_620159
PRDM15	63977	broad.mit.edu	37	21	43226450	43226450	+	Intron	SNP	C	T	T			2011-2305:2012-313-T	g.chr21:43226450C>T	uc002yzq.1	-						PRDM15_uc002yzo.2_Intron|PRDM15_uc002yzp.2_Intron|PRDM15_uc002yzr.1_Intron	NM_022115	NP_071398
FANCD2	2177	broad.mit.edu	37	3	10108835	10108835	+	Intron	SNP	T	C	C	rs116962388	by1000genomes	2011-2305:2012-313-T	g.chr3:10108835T>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron	NM_033084	NP_149075
POLQ	10721	broad.mit.edu	37	3	121265176	121265176	+	5'Flank	SNP	G	A	A	rs3806614	by1000genomes	2011-2305:2012-313-T	g.chr3:121265176G>A	uc003eee.3	-							NM_199420	NP_955452
PIK3CA	5290	broad.mit.edu	37	3	178927974	178927974	+	Missense_Mutation	SNP	G	A	A			2011-2305:2012-313-T	g.chr3:178927974G>A	uc003fjk.2	+	8	1409	c.1252G>A	c.(1252-1254)GAA>AAA	p.E418K		NM_006218	NP_006209
TP63	8626	broad.mit.edu	37	3	189349247	189349247	+	5'UTR	SNP	A	T	T	rs28673064	by1000genomes	2011-2305:2012-313-T	g.chr3:189349247A>T	uc003fry.2	+	1					TP63_uc003frx.2_5'UTR|TP63_uc003frz.2_5'UTR|TP63_uc010hzc.1_5'UTR	NM_003722	NP_003713
TPPP	11076	broad.mit.edu	37	5	691915	691915	+	Intron	SNP	T	C	C			2011-2305:2012-313-T	g.chr5:691915T>C	uc003jbh.3	-							NM_007030	NP_008961
SLC6A18	348932	broad.mit.edu	37	5	1238508	1238509	+	Intron	DNP	GG	CA	CA			2011-2305:2012-313-T	g.chr5:1238508_1238509GG>CA	uc003jby.1	+							NM_182632	NP_872438
FAM134B	54463	broad.mit.edu	37	5	16535853	16535853	+	Intron	SNP	A	G	G	rs70938059		2011-2305:2012-313-T	g.chr5:16535853A>G	uc003jfs.2	-							NM_001034850	NP_001030022
PRDM9	56979	broad.mit.edu	37	5	23526853	23526853	+	Silent	SNP	C	T	T			2011-2305:2012-313-T	g.chr5:23526853C>T	uc003jgo.2	+	11	1838	c.1656C>T	c.(1654-1656)TAC>TAT	p.Y552Y		NM_020227	NP_064612
TCP10	6953	broad.mit.edu	37	6	167800480	167800480	+	5'Flank	SNP	G	T	T			2011-2305:2012-313-T	g.chr6:167800480G>T	uc003qvv.1	-						TCP10_uc003qvu.2_5'Flank|TCP10_uc003qvw.2_5'Flank	NM_004610	NP_004601
SMOC2	64094	broad.mit.edu	37	6	169016120	169016120	+	Intron	SNP	C	T	T			2011-2305:2012-313-T	g.chr6:169016120C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
PIK3CG	5294	broad.mit.edu	37	7	106508630	106508630	+	Silent	SNP	G	A	A			2011-2305:2012-313-T	g.chr7:106508630G>A	uc003vdv.3	+	2	709	c.624G>A	c.(622-624)CCG>CCA	p.P208P	PIK3CG_uc003vdu.2_Silent_p.P208P|PIK3CG_uc003vdw.2_Silent_p.P208P	NM_002649	NP_002640
ARHGEF10	9639	broad.mit.edu	37	8	1787445	1787445	+	Intron	SNP	G	A	A	rs111709184		2011-2305:2012-313-T	g.chr8:1787445G>A	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
RB1CC1	9821	broad.mit.edu	37	8	53596373	53596373	+	Intron	SNP	A	T	T			2011-2305:2012-313-T	g.chr8:53596373A>T	uc003xre.3	-						RB1CC1_uc003xrf.3_Intron	NM_014781	NP_055596
PKHD1L1	93035	broad.mit.edu	37	8	110425594	110425594	+	Intron	SNP	G	A	A	rs4604408	by1000genomes	2011-2305:2012-313-T	g.chr8:110425594G>A	uc003yne.2	+							NM_177531	NP_803875
CDKN2A	1029	broad.mit.edu	37	9	21968242	21968242	+	Intron	SNP	C	T	T			2011-2305:2012-313-T	g.chr9:21968242C>T	uc003zpk.2	-						MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Intron|CDKN2A_uc010miu.2_Intron|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068
MTAP	4507	broad.mit.edu	37	9	22009698	22009698	+	Intron	SNP	G	C	C	rs2069418	by1000genomes	2011-2305:2012-313-T	g.chr9:22009698G>C	uc003zpi.1	+						CDKN2BAS_uc010miw.1_Intron|CDKN2BAS_uc010mix.1_Intron|CDKN2BAS_uc003zpm.2_Intron|CDKN2B_uc003zpn.2_5'Flank|CDKN2B_uc003zpo.2_5'Flank	NM_002451	NP_002442
TTF1	7270	broad.mit.edu	37	9	135252745	135252745	+	Intron	SNP	T	C	C	rs140561030	by1000genomes	2011-2305:2012-313-T	g.chr9:135252745T>C	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTF1	7270	broad.mit.edu	37	9	135252752	135252752	+	Intron	SNP	G	A	A			2011-2305:2012-313-T	g.chr9:135252752G>A	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
EXD3	54932	broad.mit.edu	37	9	140250115	140250115	+	Intron	SNP	A	T	T			2011-2305:2012-313-T	g.chr9:140250115A>T	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
PPP2R3B	28227	broad.mit.edu	37	X	323960	323960	+	Intron	SNP	C	T	T			2011-2305:2012-313-T	g.chrX:323960C>T	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
CHD5	26038	broad.mit.edu	37	1	6220442	6220442	+	Intron	SNP	G	A	A			2011-2306:2012-1324-T	g.chr1:6220442G>A	uc001amb.1	-							NM_015557	NP_056372
CHD5	26038	broad.mit.edu	37	1	6220446	6220446	+	Intron	SNP	T	C	C			2011-2306:2012-1324-T	g.chr1:6220446T>C	uc001amb.1	-							NM_015557	NP_056372
PDPN	10630	broad.mit.edu	37	1	13928539	13928541	+	Intron	TNP	TGC	GCA	GCA	rs70984269		2011-2306:2012-1324-T	g.chr1:13928539_13928541TGC>GCA	uc001avd.2	+						PDPN_uc001avc.2_Intron|PDPN_uc009vob.2_Intron|PDPN_uc009voc.2_Intron|PDPN_uc001ave.2_Intron|PDPN_uc001avf.2_Intron	NM_006474	NP_006465
PDE4DIP	9659	broad.mit.edu	37	1	145039744	145039744	+	5'UTR	SNP	C	A	A			2011-2306:2012-1324-T	g.chr1:145039744C>A	uc001elx.3	-	1					NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_5'UTR|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
PDE4DIP	9659	broad.mit.edu	37	1	145039821	145039821	+	5'UTR	SNP	C	A	A	rs7554603	by1000genomes	2011-2306:2012-1324-T	g.chr1:145039821C>A	uc001elx.3	-	1					NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_5'UTR|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
PDE4DIP	9659	broad.mit.edu	37	1	145039831	145039831	+	5'UTR	SNP	A	G	G	rs1343582	by1000genomes	2011-2306:2012-1324-T	g.chr1:145039831A>G	uc001elx.3	-	1					NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_5'UTR|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
ASH1L	55870	broad.mit.edu	37	1	155429725	155429725	+	Intron	SNP	A	C	C	rs10908466	by1000genomes	2011-2306:2012-1324-T	g.chr1:155429725A>C	uc009wqq.2	-						ASH1L_uc001fkt.2_Intron	NM_018489	NP_060959
MTA2	9219	broad.mit.edu	37	11	62365234	62365234	+	Intron	SNP	T	G	G			2011-2306:2012-1324-T	g.chr11:62365234T>G	uc001ntq.1	-						MTA2_uc010rlx.1_Intron	NM_004739	NP_004730
TPCN2	219931	broad.mit.edu	37	11	68844562	68844562	+	Intron	SNP	T	C	C			2011-2306:2012-1324-T	g.chr11:68844562T>C	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_Intron	NM_139075	NP_620714
MRE11A	4361	broad.mit.edu	37	11	94227029	94227029	+	5'UTR	SNP	C	T	T	rs1805360	by1000genomes	2011-2306:2012-1324-T	g.chr11:94227029C>T	uc001peu.2	-	1					MRE11A_uc001pev.2_5'UTR|MRE11A_uc009ywj.2_5'UTR|ANKRD49_uc001pew.2_5'Flank|ANKRD49_uc001pex.2_5'Flank	NM_005591	NP_005582
MRE11A	4361	broad.mit.edu	37	11	94227098	94227098	+	5'Flank	SNP	G	T	T	rs12708334	by1000genomes	2011-2306:2012-1324-T	g.chr11:94227098G>T	uc001peu.2	-						MRE11A_uc001pev.2_5'Flank|MRE11A_uc009ywj.2_5'Flank|ANKRD49_uc001pew.2_5'Flank|ANKRD49_uc001pex.2_5'Flank	NM_005591	NP_005582
CCND2	894	broad.mit.edu	37	12	4382320	4382320	+	5'Flank	SNP	G	T	T	rs55895521	by1000genomes	2011-2306:2012-1324-T	g.chr12:4382320G>T	uc001qmo.2	+							NM_001759	NP_001750
NELL2	4753	broad.mit.edu	37	12	45270272	45270272	+	5'Flank	SNP	G	A	A	rs4415832	by1000genomes	2011-2306:2012-1324-T	g.chr12:45270272G>A	uc001rog.2	-						NELL2_uc001rof.3_5'Flank|NELL2_uc001roh.2_5'Flank|NELL2_uc009zkd.2_5'Flank|NELL2_uc010skz.1_Intron|NELL2_uc010sla.1_Intron|NELL2_uc001roi.1_Intron|NELL2_uc010slb.1_5'Flank|NELL2_uc001roj.2_5'Flank	NM_001145108	NP_001138580
MLL2	8085	broad.mit.edu	37	12	49436724	49436724	+	Intron	SNP	A	G	G	rs12580349	by1000genomes	2011-2306:2012-1324-T	g.chr12:49436724A>G	uc001rta.3	-							NM_003482	NP_003473
GPR133	283383	broad.mit.edu	37	12	131613756	131613756	+	Intron	SNP	G	A	A			2011-2306:2012-1324-T	g.chr12:131613756G>A	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc009zyp.2_Intron	NM_198827	NP_942122
RYR3	6263	broad.mit.edu	37	15	34038849	34038849	+	Intron	SNP	G	A	A	rs12910601	by1000genomes	2011-2306:2012-1324-T	g.chr15:34038849G>A	uc001zhi.2	+						RYR3_uc010bar.2_Intron	NM_001036	NP_001027
ETFA	2108	broad.mit.edu	37	15	76553486	76553486	+	Intron	SNP	A	G	G	rs76144335	by1000genomes	2011-2306:2012-1324-T	g.chr15:76553486A>G	uc002bbt.2	-						ETFA_uc010bkq.1_Intron|ETFA_uc002bbu.1_Intron	NM_000126	NP_000117
ETFA	2108	broad.mit.edu	37	15	76553500	76553500	+	Intron	SNP	A	G	G	rs113576573	by1000genomes	2011-2306:2012-1324-T	g.chr15:76553500A>G	uc002bbt.2	-						ETFA_uc010bkq.1_Intron|ETFA_uc002bbu.1_Intron	NM_000126	NP_000117
ABAT	18	broad.mit.edu	37	16	8806421	8806421	+	Intron	SNP	T	C	C	rs1273385	by1000genomes	2011-2306:2012-1324-T	g.chr16:8806421T>C	uc002czc.3	+						ABAT_uc002czd.3_5'Flank|ABAT_uc010buh.2_5'Flank	NM_020686	NP_065737
ABAT	18	broad.mit.edu	37	16	8807100	8807100	+	Intron	SNP	G	T	T	rs1060784	by1000genomes	2011-2306:2012-1324-T	g.chr16:8807100G>T	uc002czc.3	+						ABAT_uc002czd.3_5'UTR|ABAT_uc010buh.2_5'UTR	NM_020686	NP_065737
ABAT	18	broad.mit.edu	37	16	8807315	8807315	+	Intron	SNP	C	T	T	rs7188782	by1000genomes	2011-2306:2012-1324-T	g.chr16:8807315C>T	uc002czc.3	+						ABAT_uc002czd.3_5'UTR|ABAT_uc010buh.2_5'UTR	NM_020686	NP_065737
HYDIN	54768	broad.mit.edu	37	16	70867855	70867855	+	Silent	SNP	G	C	C			2011-2306:2012-1324-T	g.chr16:70867855G>C	uc002ezr.2	-	79	13739	c.13611C>G	c.(13609-13611)CCC>CCG	p.P4537P	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210
FANCA	2175	broad.mit.edu	37	16	89804855	89804855	+	3'UTR	SNP	C	T	T	rs1230	by1000genomes	2011-2306:2012-1324-T	g.chr16:89804855C>T	uc002fou.1	-	43					ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002fop.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fos.3_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|ZNF276_uc010cit.1_3'UTR|FANCA_uc010vpn.1_3'UTR	NM_000135	NP_000126
ABR	29	broad.mit.edu	37	17	1046317	1046317	+	Intron	SNP	G	A	A			2011-2306:2012-1324-T	g.chr17:1046317G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1046346	1046346	+	Intron	SNP	A	G	G			2011-2306:2012-1324-T	g.chr17:1046346A>G	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1046461	1046461	+	Intron	SNP	G	A	A			2011-2306:2012-1324-T	g.chr17:1046461G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1049811	1049811	+	Intron	SNP	C	T	T	rs28374195	by1000genomes	2011-2306:2012-1324-T	g.chr17:1049811C>T	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1057058	1057058	+	Intron	SNP	G	A	A			2011-2306:2012-1324-T	g.chr17:1057058G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
RPTOR	57521	broad.mit.edu	37	17	78814193	78814193	+	Intron	SNP	T	C	C	rs2672870	by1000genomes	2011-2306:2012-1324-T	g.chr17:78814193T>C	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78814197	78814197	+	Intron	SNP	T	C	C	rs12944497	by1000genomes	2011-2306:2012-1324-T	g.chr17:78814197T>C	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
CSNK1G2	1455	broad.mit.edu	37	19	1959795	1959795	+	Intron	SNP	G	A	A	rs74186978	by1000genomes	2011-2306:2012-1324-T	g.chr19:1959795G>A	uc002lul.3	+							NM_001319	NP_001310
KEAP1	9817	broad.mit.edu	37	19	10610617	10610617	+	Silent	SNP	C	T	T	rs141924513	byFrequency	2011-2306:2012-1324-T	g.chr19:10610617C>T	uc002moq.1	-	2	249	c.93G>A	c.(91-93)GTG>GTA	p.V31V	KEAP1_uc002mor.1_Silent_p.V31V	NM_012289	NP_036421
LRP1B	53353	broad.mit.edu	37	2	142888376	142888376	+	5'UTR	SNP	G	C	C	rs1375610	by1000genomes	2011-2306:2012-1324-T	g.chr2:142888376G>C	uc002tvj.1	-	1					LRP1B_uc010fnl.1_Missense_Mutation_p.P12A	NM_018557	NP_061027
CASP8	841	broad.mit.edu	37	2	202124997	202124997	+	Intron	SNP	T	C	C	rs6754084	by1000genomes	2011-2306:2012-1324-T	g.chr2:202124997T>C	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxs.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc010ftd.1_Intron|CASP8_uc002uxv.1_Intron|CASP8_uc002uxw.1_5'Flank	NM_033355	NP_203519
BAGE2	85319	broad.mit.edu	37	21	11038967	11038967	+	3'UTR	SNP	T	C	C	rs28692944	by1000genomes	2011-2306:2012-1324-T	g.chr21:11038967T>C	uc002yit.1	-	6					TPTE_uc002yis.1_RNA	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11039033	11039033	+	3'UTR	SNP	G	A	A	rs28369127	by1000genomes	2011-2306:2012-1324-T	g.chr21:11039033G>A	uc002yit.1	-	6					TPTE_uc002yis.1_RNA	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11039055	11039055	+	3'UTR	SNP	A	G	G	rs28538601	by1000genomes	2011-2306:2012-1324-T	g.chr21:11039055A>G	uc002yit.1	-	6					TPTE_uc002yis.1_RNA	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11039079	11039079	+	3'UTR	SNP	C	A	A	rs3888469		2011-2306:2012-1324-T	g.chr21:11039079C>A	uc002yit.1	-	6					TPTE_uc002yis.1_RNA	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11039298	11039298	+	3'UTR	SNP	C	T	T	rs3888470		2011-2306:2012-1324-T	g.chr21:11039298C>T	uc002yit.1	-	6					TPTE_uc002yis.1_RNA	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11039302	11039302	+	3'UTR	SNP	A	G	G	rs8130395		2011-2306:2012-1324-T	g.chr21:11039302A>G	uc002yit.1	-	6					TPTE_uc002yis.1_RNA	NM_182482	NP_872288
C21orf56	84221	broad.mit.edu	37	21	47603413	47603413	+	5'UTR	SNP	A	G	G	rs56293013	by1000genomes	2011-2306:2012-1324-T	g.chr21:47603413A>G	uc011afu.1	-	2					C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
MST1R	4486	broad.mit.edu	37	3	49924947	49924947	+	Silent	SNP	G	A	A	rs5030975	byFrequency	2011-2306:2012-1324-T	g.chr3:49924947G>A	uc003cxy.3	-	20	4260	c.3996C>T	c.(3994-3996)CCC>CCT	p.P1332P	MST1R_uc011bdc.1_Silent_p.P211P	NM_002447	NP_002438
MLF1	4291	broad.mit.edu	37	3	158289035	158289035	+	5'UTR	SNP	T	A	A	rs3817373	by1000genomes	2011-2306:2012-1324-T	g.chr3:158289035T>A	uc003fcb.2	+	1					uc003fbw.1_5'Flank|MLF1_uc003fbz.2_5'UTR|MLF1_uc003fca.2_5'UTR|MLF1_uc003fbx.2_5'UTR|MLF1_uc003fcc.2_5'UTR|MLF1_uc003fby.2_5'UTR|MLF1_uc010hvx.2_5'UTR	NM_022443	NP_071888
ATXN1	6310	broad.mit.edu	37	6	16327903	16327903	+	Missense_Mutation	SNP	C	A	A	rs3817753		2011-2306:2012-1324-T	g.chr6:16327903C>A	uc003nbt.2	-	8	1610	c.639G>T	c.(637-639)CAG>CAT	p.Q213H	ATXN1_uc010jpi.2_Missense_Mutation_p.Q213H|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323
FAM135B	51059	broad.mit.edu	37	8	139153374	139153374	+	Intron	SNP	G	C	C	rs4909738	by1000genomes	2011-2306:2012-1324-T	g.chr8:139153374G>C	uc003yuy.2	-						FAM135B_uc003yux.2_Intron|FAM135B_uc003yuz.2_Intron	NM_015912	NP_056996
PARP10	84875	broad.mit.edu	37	8	145051414	145051414	+	3'UTR	SNP	G	A	A	rs1134027	by1000genomes	2011-2306:2012-1324-T	g.chr8:145051414G>A	uc003zal.3	-	11					PLEC_uc003zaj.2_5'Flank|PARP10_uc003zak.3_3'UTR|PARP10_uc011lku.1_3'UTR|PARP10_uc011lkv.1_RNA	NM_032789	NP_116178
CRB2	286204	broad.mit.edu	37	9	126123604	126123604	+	Intron	SNP	T	C	C	rs11789721	by1000genomes	2011-2306:2012-1324-T	g.chr9:126123604T>C	uc004bnx.1	+						CRB2_uc004bnw.1_Intron	NM_173689	NP_775960
ENTPD2	954	broad.mit.edu	37	9	139944496	139944496	+	Intron	SNP	T	C	C	rs10870169	by1000genomes	2011-2306:2012-1324-T	g.chr9:139944496T>C	uc004ckw.1	-						ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Intron	NM_203468	NP_982293
ENTPD2	954	broad.mit.edu	37	9	139944509	139944509	+	Intron	SNP	T	C	C	rs10735661	by1000genomes	2011-2306:2012-1324-T	g.chr9:139944509T>C	uc004ckw.1	-						ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Intron	NM_203468	NP_982293
ENTPD2	954	broad.mit.edu	37	9	139944588	139944588	+	Intron	SNP	T	C	C	rs7869655	by1000genomes	2011-2306:2012-1324-T	g.chr9:139944588T>C	uc004ckw.1	-						ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Intron	NM_203468	NP_982293
ENTPD2	954	broad.mit.edu	37	9	139944689	139944689	+	Intron	SNP	T	C	C	rs7869777	by1000genomes	2011-2306:2012-1324-T	g.chr9:139944689T>C	uc004ckw.1	-						ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Intron	NM_203468	NP_982293
MCOLN2	255231	broad.mit.edu	37	1	85422061	85422061	+	Intron	SNP	C	T	T	rs632545	by1000genomes	2011-2307:2012-1335-T	g.chr1:85422061C>T	uc001dkm.2	-						MCOLN2_uc001dkn.2_Intron	NM_153259	NP_694991
NOTCH2	4853	broad.mit.edu	37	1	120612168	120612168	+	5'UTR	SNP	C	T	T	rs11801102	by1000genomes	2011-2307:2012-1335-T	g.chr1:120612168C>T	uc001eik.2	-	1					NOTCH2_uc001eil.2_5'UTR|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719
NOTCH2	4853	broad.mit.edu	37	1	120612269	120612269	+	5'UTR	SNP	A	G	G	rs145966861	by1000genomes	2011-2307:2012-1335-T	g.chr1:120612269A>G	uc001eik.2	-	1					NOTCH2_uc001eil.2_5'UTR|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719
LRFN5	145581	broad.mit.edu	37	14	42076434	42076434	+	5'Flank	SNP	C	T	T	rs61990289	by1000genomes	2011-2307:2012-1335-T	g.chr14:42076434C>T	uc001wvm.2	+							NM_152447	NP_689660
FOXN3	1112	broad.mit.edu	37	14	89827134	89827134	+	Intron	SNP	C	G	G			2011-2307:2012-1335-T	g.chr14:89827134C>G	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
CDH15	1013	broad.mit.edu	37	16	89254939	89254939	+	Intron	SNP	G	A	A	rs10598322		2011-2307:2012-1335-T	g.chr16:89254939G>A	uc002fmt.2	+							NM_004933	NP_004924
ABR	29	broad.mit.edu	37	17	1021849	1021849	+	Intron	SNP	T	C	C			2011-2307:2012-1335-T	g.chr17:1021849T>C	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
TP53	7157	broad.mit.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	A	A			2011-2307:2012-1335-T	g.chr17:7574003G>A	uc002gim.2	-	10	1218	c.1024C>T	c.(1024-1026)CGA>TGA	p.R342*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Nonsense_Mutation_p.R210*|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Nonsense_Mutation_p.R342*	NM_001126112	NP_001119584
STAT3	6774	broad.mit.edu	37	17	40490019	40490019	+	Intron	SNP	T	G	G	rs71367911		2011-2307:2012-1335-T	g.chr17:40490019T>G	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
C18orf1	753	broad.mit.edu	37	18	13262891	13262891	+	Intron	SNP	G	A	A			2011-2307:2012-1335-T	g.chr18:13262891G>A	uc002ksa.2	+						C18orf1_uc002ksb.2_Intron	NM_181481	NP_852146
CNN2	1265	broad.mit.edu	37	19	1034146	1034146	+	Intron	SNP	A	G	G			2011-2307:2012-1335-T	g.chr19:1034146A>G	uc002lqu.2	+						CNN2_uc002lqt.1_Intron|CNN2_uc010drz.1_Intron|CNN2_uc002lqv.2_Intron|CNN2_uc010xgb.1_Intron|CNN2_uc010xgc.1_Intron	NM_004368	NP_004359
NTN5	126147	broad.mit.edu	37	19	49172647	49172647	+	Intron	SNP	C	T	T			2011-2307:2012-1335-T	g.chr19:49172647C>T	uc002pkb.2	-						SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Intron	NM_145807	NP_665806
TTN	7273	broad.mit.edu	37	2	179462460	179462460	+	Missense_Mutation	SNP	A	G	G			2011-2307:2012-1335-T	g.chr2:179462460A>G	uc010zfg.1	-	243	49869	c.49645T>C	c.(49645-49647)TCT>CCT	p.S16549P	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S10244P|TTN_uc010zfi.1_Missense_Mutation_p.S10177P|TTN_uc010zfj.1_Missense_Mutation_p.S10052P	NM_133378	NP_596869
TTLL8	164714	broad.mit.edu	37	22	50467696	50467696	+	Intron	SNP	A	G	G	rs13056079		2011-2307:2012-1335-T	g.chr22:50467696A>G	uc011ark.1	-							NM_001080447	NP_001073916
AFAP1	60312	broad.mit.edu	37	4	7898377	7898377	+	Intron	SNP	C	T	T	rs34895446		2011-2307:2012-1335-T	g.chr4:7898377C>T	uc003gkg.1	-						AFAP1_uc011bwk.1_Intron	NM_198595	NP_940997
SLC10A7	84068	broad.mit.edu	37	4	147207501	147207501	+	Intron	SNP	T	G	G			2011-2307:2012-1335-T	g.chr4:147207501T>G	uc010ioz.2	-						SLC10A7_uc003ikr.2_Intron|SLC10A7_uc010ipa.2_Intron|SLC10A7_uc003iks.2_Intron	NM_001029998	NP_001025169
FAT1	2195	broad.mit.edu	37	4	187522449	187522449	+	Nonsense_Mutation	SNP	G	A	A			2011-2307:2012-1335-T	g.chr4:187522449G>A	uc003izf.2	-	21	11802	c.11614C>T	c.(11614-11616)CGA>TGA	p.R3872*		NM_005245	NP_005236
SLC9A3	6550	broad.mit.edu	37	5	487011	487011	+	Intron	SNP	C	T	T			2011-2307:2012-1335-T	g.chr5:487011C>T	uc003jbe.2	-						SLC9A3_uc011clx.1_Intron	NM_004174	NP_004165
MAD1L1	8379	broad.mit.edu	37	7	2089820	2089820	+	Intron	SNP	G	A	A			2011-2307:2012-1335-T	g.chr7:2089820G>A	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
ZFP41	286128	broad.mit.edu	37	8	144342173	144342173	+	3'UTR	SNP	G	C	C			2011-2307:2012-1335-T	g.chr8:144342173G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
ZFP41	286128	broad.mit.edu	37	8	144342202	144342202	+	3'UTR	SNP	G	C	C			2011-2307:2012-1335-T	g.chr8:144342202G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
PARP10	84875	broad.mit.edu	37	8	145055557	145055557	+	Intron	SNP	A	G	G	rs62530287		2011-2307:2012-1335-T	g.chr8:145055557A>G	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
ABCA4	24	broad.mit.edu	37	1	94576968	94576968	+	Intron	SNP	T	C	C	rs2297634	by1000genomes	2011-2309:2012-318-T	g.chr1:94576968T>C	uc001dqh.2	-						ABCA4_uc010otn.1_Intron	NM_000350	NP_000341
C1orf125	126859	broad.mit.edu	37	1	179503805	179503805	+	Intron	SNP	C	T	T	rs112037427		2011-2309:2012-318-T	g.chr1:179503805C>T	uc001gmo.2	+						C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron	NM_144696	NP_653297
DIP2C	22982	broad.mit.edu	37	10	724548	724548	+	Intron	SNP	A	C	C	rs4881507	by1000genomes	2011-2309:2012-318-T	g.chr10:724548A>C	uc001ifp.2	-							NM_014974	NP_055789
PIK3C2A	5286	broad.mit.edu	37	11	17111272	17111272	+	3'UTR	SNP	A	G	G	rs10832733	by1000genomes	2011-2309:2012-318-T	g.chr11:17111272A>G	uc001mmq.3	-	32					PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_3'UTR|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636
OR4C15	81309	broad.mit.edu	37	11	55321661	55321661	+	5'Flank	SNP	C	T	T	rs55828496	by1000genomes	2011-2309:2012-318-T	g.chr11:55321661C>T	uc010rig.1	+							NM_001001920	NP_001001920
GPR133	283383	broad.mit.edu	37	12	131578398	131578398	+	Intron	SNP	G	A	A	rs2398547	by1000genomes	2011-2309:2012-318-T	g.chr12:131578398G>A	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
TP53	7157	broad.mit.edu	37	17	7578202	7578202	+	Missense_Mutation	SNP	A	C	C			2011-2309:2012-318-T	g.chr17:7578202A>C	uc002gim.2	-	6	841	c.647T>G	c.(646-648)GTG>GGG	p.V216G	TP53_uc002gig.1_Missense_Mutation_p.V216G|TP53_uc002gih.2_Missense_Mutation_p.V216G|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.V84G|TP53_uc010cng.1_Missense_Mutation_p.V84G|TP53_uc002gii.1_Missense_Mutation_p.V84G|TP53_uc010cnh.1_Missense_Mutation_p.V216G|TP53_uc010cni.1_Missense_Mutation_p.V216G|TP53_uc002gij.2_Missense_Mutation_p.V216G|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.V123G|TP53_uc002gio.2_Missense_Mutation_p.V84G|TP53_uc010vug.1_Missense_Mutation_p.V177G	NM_001126112	NP_001119584
RPTOR	57521	broad.mit.edu	37	17	78814156	78814156	+	Intron	SNP	G	A	A	rs113199399		2011-2309:2012-318-T	g.chr17:78814156G>A	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78814173	78814173	+	Intron	SNP	A	G	G	rs148700666	by1000genomes	2011-2309:2012-318-T	g.chr17:78814173A>G	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
MED16	10025	broad.mit.edu	37	19	879483	879483	+	Intron	SNP	G	A	A	rs112204210	by1000genomes	2011-2309:2012-318-T	g.chr19:879483G>A	uc002lqd.1	-						MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Intron|MED16_uc002lqf.2_Intron|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Intron|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472
RMND5A	64795	broad.mit.edu	37	2	87645024	87645024	+	Intron	SNP	C	T	T			2011-2309:2012-318-T	g.chr2:87645024C>T	uc002srs.3	+								
CASP8	841	broad.mit.edu	37	2	202131505	202131505	+	Missense_Mutation	SNP	C	T	T			2011-2309:2012-318-T	g.chr2:202131505C>T	uc002uxr.1	+	3	505	c.296C>T	c.(295-297)TCT>TTT	p.S99F	CASP8_uc010ftc.1_Missense_Mutation_p.S99F|CASP8_uc002uxo.1_Missense_Mutation_p.S99F|CASP8_uc002uxp.1_Missense_Mutation_p.S99F|CASP8_uc002uxq.1_Missense_Mutation_p.S99F|CASP8_uc002uxs.1_Missense_Mutation_p.S99F|CASP8_uc002uxt.1_Missense_Mutation_p.S158F|CASP8_uc002uxu.1_RNA|CASP8_uc010ftd.1_Intron|CASP8_uc002uxv.1_Missense_Mutation_p.S99F|CASP8_uc002uxw.1_Missense_Mutation_p.S99F|CASP8_uc002uxy.1_Missense_Mutation_p.S99F|CASP8_uc002uxx.1_Missense_Mutation_p.S99F|CASP8_uc010ftf.2_Missense_Mutation_p.S99F	NM_033355	NP_203519
ARFGEF2	10564	broad.mit.edu	37	20	47628363	47628363	+	Intron	SNP	G	A	A	rs1535268	by1000genomes	2011-2309:2012-318-T	g.chr20:47628363G>A	uc002xtx.3	+						ARFGEF2_uc010zyf.1_Intron	NM_006420	NP_006411
KCNQ2	3785	broad.mit.edu	37	20	62064055	62064055	+	Intron	SNP	T	A	A			2011-2309:2012-318-T	g.chr20:62064055T>A	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron	NM_172107	NP_742105
KCNQ2	3785	broad.mit.edu	37	20	62064064	62064064	+	Intron	SNP	C	T	T			2011-2309:2012-318-T	g.chr20:62064064C>T	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron	NM_172107	NP_742105
FAT1	2195	broad.mit.edu	37	4	187527039	187527039	+	Intron	SNP	G	A	A	rs11735243	by1000genomes	2011-2309:2012-318-T	g.chr4:187527039G>A	uc003izf.2	-							NM_005245	NP_005236
AHRR	57491	broad.mit.edu	37	5	309862	309862	+	Intron	SNP	C	A	A			2011-2309:2012-318-T	g.chr5:309862C>A	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|PDCD6_uc003jat.1_Intron|PDCD6_uc003jau.1_Intron	NM_020731	NP_065782
AHRR	57491	broad.mit.edu	37	5	392342	392342	+	Intron	SNP	G	A	A			2011-2309:2012-318-T	g.chr5:392342G>A	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
RASA1	5921	broad.mit.edu	37	5	86672233	86672233	+	Nonsense_Mutation	SNP	C	T	T			2011-2309:2012-318-T	g.chr5:86672233C>T	uc003kiw.2	+	16	2153	c.2035C>T	c.(2035-2037)CGA>TGA	p.R679*	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_Nonsense_Mutation_p.R502*|RASA1_uc011ctv.1_Nonsense_Mutation_p.R512*|RASA1_uc011ctw.1_Nonsense_Mutation_p.R513*|RASA1_uc010jaw.2_Nonsense_Mutation_p.R501*	NM_002890	NP_002881
LAMB1	3912	broad.mit.edu	37	7	107618420	107618420	+	Intron	SNP	A	G	G	rs11769960	by1000genomes	2011-2309:2012-318-T	g.chr7:107618420A>G	uc003vew.2	-						LAMB1_uc003vev.2_Intron|LAMB1_uc003vex.2_Intron|LAMB1_uc010ljn.1_Intron	NM_002291	NP_002282
PTPRN2	5799	broad.mit.edu	37	7	157852057	157852057	+	Intron	SNP	G	A	A			2011-2309:2012-318-T	g.chr7:157852057G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157941000	157941000	+	Intron	SNP	G	A	A			2011-2309:2012-318-T	g.chr7:157941000G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157941079	157941079	+	Intron	SNP	T	A	A			2011-2309:2012-318-T	g.chr7:157941079T>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
UNC5D	137970	broad.mit.edu	37	8	35588568	35588568	+	Missense_Mutation	SNP	G	A	A			2011-2309:2012-318-T	g.chr8:35588568G>A	uc003xjr.1	+	11	2048	c.1720G>A	c.(1720-1722)GAG>AAG	p.E574K	UNC5D_uc003xjs.1_Missense_Mutation_p.E569K|UNC5D_uc003xju.1_Missense_Mutation_p.E150K	NM_080872	NP_543148
RB1CC1	9821	broad.mit.edu	37	8	53540663	53540663	+	Missense_Mutation	SNP	G	C	C			2011-2309:2012-318-T	g.chr8:53540663G>C	uc003xre.3	-	22	5123	c.4565C>G	c.(4564-4566)ACT>AGT	p.T1522S	RB1CC1_uc003xrf.3_Missense_Mutation_p.T1522S	NM_014781	NP_055596
CSMD3	114788	broad.mit.edu	37	8	113420605	113420605	+	Silent	SNP	T	A	A			2011-2309:2012-318-T	g.chr8:113420605T>A	uc003ynu.2	-	34	5706	c.5547A>T	c.(5545-5547)ACA>ACT	p.T1849T	CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Silent_p.T1809T|CSMD3_uc011lhx.1_Silent_p.T1745T	NM_198123	NP_937756
CDKN2A	1029	broad.mit.edu	37	9	21971053	21971053	+	Missense_Mutation	SNP	G	T	T	rs137854598		2011-2309:2012-318-T	g.chr9:21971053G>T	uc003zpk.2	-	2	517	c.305C>A	c.(304-306)GCG>GAG	p.A102E	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.G157G	NM_000077	NP_000068
FANCG	2189	broad.mit.edu	37	9	35076894	35076894	+	Intron	SNP	C	T	T			2011-2309:2012-318-T	g.chr9:35076894C>T	uc003zwb.1	-						FANCG_uc003zwa.1_Intron|FANCG_uc010mkj.1_Intron|FANCG_uc011lot.1_Intron	NM_004629	NP_004620
GNAQ	2776	broad.mit.edu	37	9	80343561	80343561	+	Missense_Mutation	SNP	G	A	A			2011-2309:2012-318-T	g.chr9:80343561G>A	uc004akw.2	-	6	799	c.758C>T	c.(757-759)GCT>GTT	p.A253V	GNAQ_uc011lso.1_Missense_Mutation_p.A51V	NM_002072	NP_002063
HDX	139324	broad.mit.edu	37	X	83757817	83757817	+	5'Flank	SNP	G	A	A	rs2294339	by1000genomes	2011-2309:2012-318-T	g.chrX:83757817G>A	uc004eek.1	-						HDX_uc011mqv.1_5'Flank|HDX_uc004eel.1_5'Flank	NM_144657	NP_653258
B4GALNT3	283358	broad.mit.edu	37	12	622058	622058	+	Intron	SNP	T	G	G	rs28808123	by1000genomes	2011-2310:2012-317-T	g.chr12:622058T>G	uc001qii.1	+							NM_173593	NP_775864
GPR133	283383	broad.mit.edu	37	12	131502357	131502357	+	Intron	SNP	T	C	C	rs35375835	by1000genomes	2011-2310:2012-317-T	g.chr12:131502357T>C	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
F7	2155	broad.mit.edu	37	13	113761891	113761891	+	Intron	SNP	G	A	A			2011-2310:2012-317-T	g.chr13:113761891G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
ZFPM1	161882	broad.mit.edu	37	16	88553198	88553198	+	Intron	SNP	T	C	C	rs28634651	by1000genomes	2011-2310:2012-317-T	g.chr16:88553198T>C	uc002fkv.2	+							NM_153813	NP_722520
TP53	7157	broad.mit.edu	37	17	7578478	7578478	+	Missense_Mutation	SNP	G	T	T			2011-2310:2012-317-T	g.chr17:7578478G>T	uc002gim.2	-	5	646	c.452C>A	c.(451-453)CCC>CAC	p.P151H	TP53_uc002gig.1_Missense_Mutation_p.P151H|TP53_uc002gih.2_Missense_Mutation_p.P151H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P19H|TP53_uc010cng.1_Missense_Mutation_p.P19H|TP53_uc002gii.1_Missense_Mutation_p.P19H|TP53_uc010cnh.1_Missense_Mutation_p.P151H|TP53_uc010cni.1_Missense_Mutation_p.P151H|TP53_uc002gij.2_Missense_Mutation_p.P151H|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.P58H|TP53_uc002gio.2_Missense_Mutation_p.P19H|TP53_uc010vug.1_Missense_Mutation_p.P112H	NM_001126112	NP_001119584
KIAA1468	57614	broad.mit.edu	37	18	59954765	59954765	+	Intron	SNP	G	T	T	rs1567038	by1000genomes	2011-2310:2012-317-T	g.chr18:59954765G>T	uc002lil.2	+						KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
DNMT3A	1788	broad.mit.edu	37	2	25458546	25458546	+	Intron	SNP	C	T	T	rs2304429	by1000genomes	2011-2310:2012-317-T	g.chr2:25458546C>T	uc002rgc.2	-						DNMT3A_uc002rgd.2_Intron|DNMT3A_uc010eyi.2_Intron|DNMT3A_uc002rgb.2_Intron	NM_022552	NP_072046
FARP2	9855	broad.mit.edu	37	2	242352839	242352839	+	Intron	SNP	A	G	G			2011-2310:2012-317-T	g.chr2:242352839A>G	uc002wbi.1	+						FARP2_uc010zoq.1_Intron|FARP2_uc010zor.1_Intron	NM_014808	NP_055623
CNTNAP2	26047	broad.mit.edu	37	7	147336165	147336165	+	Intron	SNP	G	T	T			2011-2310:2012-317-T	g.chr7:147336165G>T	uc003weu.1	+							NM_014141	NP_054860
NOTCH1	4851	broad.mit.edu	37	9	139412628	139412628	+	Missense_Mutation	SNP	C	A	A			2011-2310:2012-317-T	g.chr9:139412628C>A	uc004chz.2	-	7	1216	c.1216G>T	c.(1216-1218)GGC>TGC	p.G406C		NM_017617	NP_060087
JAK1	3716	broad.mit.edu	37	1	65334910	65334910	+	Intron	SNP	G	C	C			2011-2311:2012-362-T	g.chr1:65334910G>C	uc001dbu.1	-						JAK1_uc009wam.1_Intron	NM_002227	NP_002218
PDE4DIP	9659	broad.mit.edu	37	1	144892586	144892586	+	Missense_Mutation	SNP	G	T	T	rs138493755		2011-2311:2012-362-T	g.chr1:144892586G>T	uc001elw.3	-	22	3110	c.2819C>A	c.(2818-2820)GCA>GAA	p.A940E	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.A1006E|PDE4DIP_uc001emc.1_Missense_Mutation_p.A940E|PDE4DIP_uc001emd.1_Missense_Mutation_p.A940E|PDE4DIP_uc001elv.3_5'UTR|PDE4DIP_uc001emb.1_Missense_Mutation_p.A1103E	NM_014644	NP_055459
SPTA1	6708	broad.mit.edu	37	1	158612687	158612687	+	Missense_Mutation	SNP	C	A	A			2011-2311:2012-362-T	g.chr1:158612687C>A	uc001fst.1	-	32	4721	c.4522G>T	c.(4522-4524)GAC>TAC	p.D1508Y		NM_003126	NP_003117
SPTA1	6708	broad.mit.edu	37	1	158637806	158637806	+	Missense_Mutation	SNP	T	A	A			2011-2311:2012-362-T	g.chr1:158637806T>A	uc001fst.1	-	15	2079	c.1880A>T	c.(1879-1881)GAA>GTA	p.E627V		NM_003126	NP_003117
IDI1	3422	broad.mit.edu	37	10	1092876	1092876	+	Intron	SNP	A	C	C			2011-2311:2012-362-T	g.chr10:1092876A>C	uc001iga.2	-						IDI1_uc001ifz.2_5'Flank|IDI1_uc001igb.2_Intron|IDI1_uc001igc.2_Intron|uc001igd.2_5'Flank	NM_004508	NP_004499
EXT2	2132	broad.mit.edu	37	11	44117122	44117122	+	5'UTR	SNP	G	A	A	rs3923808	by1000genomes	2011-2311:2012-362-T	g.chr11:44117122G>A	uc001mxz.2	+	1					EXT2_uc010rfo.1_Intron|EXT2_uc001mxy.2_5'UTR|EXT2_uc009ykt.2_5'UTR|EXT2_uc001mya.2_5'Flank	NM_207122	NP_997005
AHNAK	79026	broad.mit.edu	37	11	62284492	62284492	+	Silent	SNP	C	A	A			2011-2311:2012-362-T	g.chr11:62284492C>A	uc001ntl.2	-	5	17697	c.17397G>T	c.(17395-17397)CTG>CTT	p.L5799L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
AHNAK	79026	broad.mit.edu	37	11	62292304	62292304	+	Silent	SNP	A	G	G			2011-2311:2012-362-T	g.chr11:62292304A>G	uc001ntl.2	-	5	9885	c.9585T>C	c.(9583-9585)ATT>ATC	p.I3195I	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
NINJ2	4815	broad.mit.edu	37	12	691889	691889	+	Intron	SNP	A	G	G			2011-2311:2012-362-T	g.chr12:691889A>G	uc001qil.2	-						NINJ2_uc010sdr.1_Intron|NINJ2_uc010sds.1_Intron	NM_016533	NP_057617
LRRK2	120892	broad.mit.edu	37	12	40749963	40749963	+	Missense_Mutation	SNP	G	C	C			2011-2311:2012-362-T	g.chr12:40749963G>C	uc001rmg.3	+	46	6938	c.6817G>C	c.(6817-6819)GCA>CCA	p.A2273P	LRRK2_uc009zjw.2_Missense_Mutation_p.A1111P|LRRK2_uc001rmi.2_Missense_Mutation_p.A1106P	NM_198578	NP_940980
MLL2	8085	broad.mit.edu	37	12	49436079	49436079	+	Nonsense_Mutation	SNP	C	A	A			2011-2311:2012-362-T	g.chr12:49436079C>A	uc001rta.3	-	28	5902	c.5902G>T	c.(5902-5904)GAG>TAG	p.E1968*		NM_003482	NP_003473
NAV3	89795	broad.mit.edu	37	12	78415660	78415660	+	Intron	SNP	T	A	A			2011-2311:2012-362-T	g.chr12:78415660T>A	uc001syp.2	+						NAV3_uc001syo.2_Intron	NM_014903	NP_055718
ANO4	121601	broad.mit.edu	37	12	101480632	101480632	+	Intron	SNP	G	T	T			2011-2311:2012-362-T	g.chr12:101480632G>T	uc010svm.1	+						ANO4_uc001thw.2_Intron|ANO4_uc001thx.2_Intron|ANO4_uc001thy.2_Intron	NM_178826	NP_849148
TRIP11	9321	broad.mit.edu	37	14	92465804	92465804	+	Intron	SNP	T	A	A			2011-2311:2012-362-T	g.chr14:92465804T>A	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
HERC2	8924	broad.mit.edu	37	15	28359837	28359837	+	Missense_Mutation	SNP	C	T	T			2011-2311:2012-362-T	g.chr15:28359837C>T	uc001zbj.2	-	90	13940	c.13834G>A	c.(13834-13836)GAC>AAC	p.D4612N	HERC2_uc001zbi.2_Missense_Mutation_p.D301N	NM_004667	NP_004658
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	A	A	rs11540652		2011-2311:2012-362-T	g.chr17:7577538C>A	uc002gim.2	-	7	937	c.743G>T	c.(742-744)CGG>CTG	p.R248L	TP53_uc002gig.1_Missense_Mutation_p.R248L|TP53_uc002gih.2_Missense_Mutation_p.R248L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116L|TP53_uc010cng.1_Missense_Mutation_p.R116L|TP53_uc002gii.1_Missense_Mutation_p.R116L|TP53_uc010cnh.1_Missense_Mutation_p.R248L|TP53_uc010cni.1_Missense_Mutation_p.R248L|TP53_uc002gij.2_Missense_Mutation_p.R248L|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155L|TP53_uc002gio.2_Missense_Mutation_p.R116L	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7578442	7578442	+	Missense_Mutation	SNP	T	C	C	rs148924904		2011-2311:2012-362-T	g.chr17:7578442T>C	uc002gim.2	-	5	682	c.488A>G	c.(487-489)TAC>TGC	p.Y163C	TP53_uc002gig.1_Missense_Mutation_p.Y163C|TP53_uc002gih.2_Missense_Mutation_p.Y163C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.Y31C|TP53_uc010cng.1_Missense_Mutation_p.Y31C|TP53_uc002gii.1_Missense_Mutation_p.Y31C|TP53_uc010cnh.1_Missense_Mutation_p.Y163C|TP53_uc010cni.1_Missense_Mutation_p.Y163C|TP53_uc002gij.2_Missense_Mutation_p.Y163C|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.Y70C|TP53_uc002gio.2_Missense_Mutation_p.Y31C|TP53_uc010vug.1_Missense_Mutation_p.Y124C	NM_001126112	NP_001119584
MYH1	4619	broad.mit.edu	37	17	10415208	10415208	+	Missense_Mutation	SNP	G	T	T			2011-2311:2012-362-T	g.chr17:10415208G>T	uc002gmo.2	-	14	1458	c.1364C>A	c.(1363-1365)CCC>CAC	p.P455H	uc002gml.1_Intron	NM_005963	NP_005954
ABCA6	23460	broad.mit.edu	37	17	67109812	67109812	+	Missense_Mutation	SNP	C	T	T			2011-2311:2012-362-T	g.chr17:67109812C>T	uc002jhw.1	-	14	2024	c.1849G>A	c.(1849-1851)GAA>AAA	p.E617K	ABCA6_uc002jhx.1_Missense_Mutation_p.E70K	NM_080284	NP_525023
C18orf1	753	broad.mit.edu	37	18	13262554	13262554	+	Intron	SNP	C	T	T			2011-2311:2012-362-T	g.chr18:13262554C>T	uc002ksa.2	+						C18orf1_uc002ksb.2_Intron	NM_181481	NP_852146
DCC	1630	broad.mit.edu	37	18	50936780	50936780	+	Intron	SNP	G	A	A	rs10853631	by1000genomes	2011-2311:2012-362-T	g.chr18:50936780G>A	uc002lfe.1	+						DCC_uc010xdr.1_Intron|DCC_uc010dpf.1_Intron	NM_005215	NP_005206
RTTN	25914	broad.mit.edu	37	18	67679326	67679326	+	Intron	SNP	A	G	G	rs12961728	by1000genomes	2011-2311:2012-362-T	g.chr18:67679326A>G	uc002lkp.2	-						RTTN_uc002lko.2_Intron|RTTN_uc010xfb.1_Intron|RTTN_uc002lkn.2_Intron|RTTN_uc010dqp.2_Intron	NM_173630	NP_775901
KCNG2	26251	broad.mit.edu	37	18	77626503	77626503	+	Intron	SNP	G	T	T	rs62103182	by1000genomes	2011-2311:2012-362-T	g.chr18:77626503G>T	uc010xfl.1	+							NM_012283	NP_036415
SFRS14	10147	broad.mit.edu	37	19	19136989	19136989	+	Silent	SNP	G	A	A			2011-2311:2012-362-T	g.chr19:19136989G>A	uc002nkx.2	-	3	314	c.168C>T	c.(166-168)GAC>GAT	p.D56D	SFRS14_uc002nkz.1_Silent_p.D70D|SFRS14_uc002nla.1_Silent_p.D56D|SFRS14_uc002nlb.2_Silent_p.D56D|SFRS14_uc010xqk.1_Translation_Start_Site	NM_014884	NP_055699
CNGA3	1261	broad.mit.edu	37	2	99012404	99012404	+	Silent	SNP	C	T	T			2011-2311:2012-362-T	g.chr2:99012404C>T	uc002syt.2	+	8	1188	c.771C>T	c.(769-771)GTC>GTT	p.V257V	CNGA3_uc002syu.2_Silent_p.V239V|CNGA3_uc010fij.2_Silent_p.V261V	NM_001298	NP_001289
ZEB2	9839	broad.mit.edu	37	2	145157056	145157056	+	Silent	SNP	G	T	T			2011-2311:2012-362-T	g.chr2:145157056G>T	uc002tvu.2	-	8	2178	c.1698C>A	c.(1696-1698)GTC>GTA	p.V566V	ZEB2_uc002tvv.2_Silent_p.V560V|ZEB2_uc010zbm.1_Silent_p.V537V|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Silent_p.V595V	NM_014795	NP_055610
TTN	7273	broad.mit.edu	37	2	179606103	179606103	+	Missense_Mutation	SNP	G	A	A			2011-2311:2012-362-T	g.chr2:179606103G>A	uc010zfh.1	-	46	11568	c.11344C>T	c.(11344-11346)CTT>TTT	p.L3782F	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.L3715F|TTN_uc010zfj.1_Missense_Mutation_p.L3590F|TTN_uc002umz.1_Intron	NM_133437	NP_597681
TTN	7273	broad.mit.edu	37	2	179633613	179633613	+	Missense_Mutation	SNP	C	T	T			2011-2311:2012-362-T	g.chr2:179633613C>T	uc010zfg.1	-	38	9174	c.8950G>A	c.(8950-8952)GAC>AAC	p.D2984N	TTN_uc010zfh.1_Missense_Mutation_p.D2938N|TTN_uc010zfi.1_Missense_Mutation_p.D2938N|TTN_uc010zfj.1_Missense_Mutation_p.D2938N|TTN_uc002unb.2_Missense_Mutation_p.D2984N	NM_133378	NP_596869
ESPNL	339768	broad.mit.edu	37	2	239027152	239027152	+	Intron	SNP	G	A	A			2011-2311:2012-362-T	g.chr2:239027152G>A	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
PAK7	57144	broad.mit.edu	37	20	9543367	9543367	+	Intron	SNP	C	A	A			2011-2311:2012-362-T	g.chr20:9543367C>A	uc002wnl.2	-						PAK7_uc002wnk.2_Intron|PAK7_uc002wnj.2_Intron|PAK7_uc010gby.1_Intron	NM_020341	NP_065074
ASXL1	171023	broad.mit.edu	37	20	31022351	31022351	+	Missense_Mutation	SNP	G	C	C			2011-2311:2012-362-T	g.chr20:31022351G>C	uc002wxs.2	+	12	2262	c.1836G>C	c.(1834-1836)AGG>AGC	p.R612S	ASXL1_uc010geb.2_Missense_Mutation_p.R503S	NM_015338	NP_056153
FOXP1	27086	broad.mit.edu	37	3	71102865	71102865	+	Silent	SNP	C	T	T			2011-2311:2012-362-T	g.chr3:71102865C>T	uc003dol.2	-	4	665	c.342G>A	c.(340-342)CAG>CAA	p.Q114Q	FOXP1_uc003dom.2_Intron|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.Q114Q|FOXP1_uc003dop.2_Silent_p.Q114Q|FOXP1_uc003doq.1_Silent_p.Q114Q|FOXP1_uc003doi.2_Silent_p.Q14Q|FOXP1_uc003doj.2_Silent_p.Q14Q|FOXP1_uc003dok.2_Intron	NM_032682	NP_116071
EPHA3	2042	broad.mit.edu	37	3	89156740	89156740	+	5'UTR	SNP	C	T	T			2011-2311:2012-362-T	g.chr3:89156740C>T	uc003dqy.2	+	1					EPHA3_uc003dqx.1_5'UTR|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224
GMPS	8833	broad.mit.edu	37	3	155637002	155637002	+	Intron	SNP	G	C	C			2011-2311:2012-362-T	g.chr3:155637002G>C	uc003faq.2	+						GMPS_uc011bom.1_Intron	NM_003875	NP_003866
SORCS2	57537	broad.mit.edu	37	4	7455225	7455225	+	Intron	SNP	A	G	G			2011-2311:2012-362-T	g.chr4:7455225A>G	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
FBXW7	55294	broad.mit.edu	37	4	153333606	153333606	+	Intron	SNP	T	A	A			2011-2311:2012-362-T	g.chr4:153333606T>A	uc003ims.2	-						FBXW7_uc011cii.1_Intron|FBXW7_uc003imt.2_Intron|FBXW7_uc003imu.2_Intron	NM_033632	NP_361014
SLC9A3	6550	broad.mit.edu	37	5	500972	500972	+	Intron	SNP	T	C	C			2011-2311:2012-362-T	g.chr5:500972T>C	uc003jbe.2	-						SLC9A3_uc011clx.1_Intron	NM_004174	NP_004165
TRIO	7204	broad.mit.edu	37	5	14482839	14482839	+	Missense_Mutation	SNP	A	G	G			2011-2311:2012-362-T	g.chr5:14482839A>G	uc003jff.2	+	46	6620	c.6614A>G	c.(6613-6615)AAG>AGG	p.K2205R	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Missense_Mutation_p.K1854R	NM_007118	NP_009049
CDH10	1008	broad.mit.edu	37	5	24498637	24498637	+	Intron	SNP	G	T	T			2011-2311:2012-362-T	g.chr5:24498637G>T	uc003jgr.1	-						CDH10_uc011cnu.1_Intron	NM_006727	NP_006718
CDH9	1007	broad.mit.edu	37	5	26881273	26881273	+	Missense_Mutation	SNP	T	C	C			2011-2311:2012-362-T	g.chr5:26881273T>C	uc003jgs.1	-	12	2511	c.2342A>G	c.(2341-2343)TAT>TGT	p.Y781C	CDH9_uc011cnv.1_Missense_Mutation_p.Y374C	NM_016279	NP_057363
CDH9	1007	broad.mit.edu	37	5	26902630	26902630	+	Missense_Mutation	SNP	C	A	A			2011-2311:2012-362-T	g.chr5:26902630C>A	uc003jgs.1	-	7	1377	c.1208G>T	c.(1207-1209)GGA>GTA	p.G403V		NM_016279	NP_057363
MEF2C	4208	broad.mit.edu	37	5	88100532	88100532	+	Missense_Mutation	SNP	G	C	C			2011-2311:2012-362-T	g.chr5:88100532G>C	uc003kjj.2	-	3	814	c.141C>G	c.(139-141)ATC>ATG	p.I47M	MEF2C_uc003kji.2_Missense_Mutation_p.I47M|MEF2C_uc003kjk.2_Missense_Mutation_p.I47M|MEF2C_uc003kjm.2_Missense_Mutation_p.I47M|MEF2C_uc003kjl.2_Missense_Mutation_p.I47M	NM_002397	NP_002388
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139838409	139838409	+	Missense_Mutation	SNP	A	G	G			2011-2311:2012-362-T	g.chr5:139838409A>G	uc003lfs.1	+	8	1566	c.1442A>G	c.(1441-1443)GAA>GGA	p.E481G	ANKHD1_uc003lfq.1_Missense_Mutation_p.E481G|ANKHD1_uc003lfr.2_Missense_Mutation_p.E481G|ANKHD1_uc003lft.1_5'Flank|ANKHD1_uc003lfu.1_5'Flank|ANKHD1_uc003lfp.2_Missense_Mutation_p.E470G|ANKHD1_uc003lfo.2_Missense_Mutation_p.E481G|ANKHD1_uc010jfk.2_Missense_Mutation_p.E481G	NM_020690	NP_065741
PCDHB11	56125	broad.mit.edu	37	5	140579412	140579412	+	Missense_Mutation	SNP	G	C	C	rs35630223		2011-2311:2012-362-T	g.chr5:140579412G>C	uc003liy.2	+	1	65	c.65G>C	c.(64-66)GGA>GCA	p.G22A	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754
NSD1	64324	broad.mit.edu	37	5	176638794	176638794	+	Nonsense_Mutation	SNP	G	T	T			2011-2311:2012-362-T	g.chr5:176638794G>T	uc003mfr.3	+	5	3532	c.3394G>T	c.(3394-3396)GGA>TGA	p.G1132*	NSD1_uc003mft.3_Nonsense_Mutation_p.G863*|NSD1_uc003mfs.1_Nonsense_Mutation_p.G1029*|NSD1_uc011dfx.1_Nonsense_Mutation_p.G780*	NM_022455	NP_071900
NSD1	64324	broad.mit.edu	37	5	176710828	176710828	+	Missense_Mutation	SNP	G	T	T			2011-2311:2012-362-T	g.chr5:176710828G>T	uc003mfr.3	+	20	6188	c.6050G>T	c.(6049-6051)CGG>CTG	p.R2017L	NSD1_uc003mft.3_Missense_Mutation_p.R1748L|NSD1_uc011dfx.1_Missense_Mutation_p.R1665L	NM_022455	NP_071900
PKHD1	5314	broad.mit.edu	37	6	51897901	51897901	+	Silent	SNP	G	A	A			2011-2311:2012-362-T	g.chr6:51897901G>A	uc003pah.1	-	29	3567	c.3291C>T	c.(3289-3291)CCC>CCT	p.P1097P	PKHD1_uc003pai.2_Silent_p.P1097P	NM_138694	NP_619639
SYNE1	23345	broad.mit.edu	37	6	152485171	152485171	+	Intron	SNP	C	A	A			2011-2311:2012-362-T	g.chr6:152485171C>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152777321	152777321	+	Intron	SNP	G	A	A			2011-2311:2012-362-T	g.chr6:152777321G>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152783798	152783798	+	Intron	SNP	A	G	G			2011-2311:2012-362-T	g.chr6:152783798A>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_3'UTR|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
SLC22A2	6582	broad.mit.edu	37	6	160639912	160639912	+	Intron	SNP	C	T	T			2011-2311:2012-362-T	g.chr6:160639912C>T	uc003qtf.2	-						SLC22A2_uc003qte.1_Intron	NM_003058	NP_003049
MAD1L1	8379	broad.mit.edu	37	7	1910218	1910218	+	Intron	SNP	C	A	A			2011-2311:2012-362-T	g.chr7:1910218C>A	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc003sld.1_Intron	NM_001013836	NP_001013858
THSD7A	221981	broad.mit.edu	37	7	11581209	11581209	+	Silent	SNP	A	C	C			2011-2311:2012-362-T	g.chr7:11581209A>C	uc003ssf.3	-	6	1911	c.1659T>G	c.(1657-1659)TCT>TCG	p.S553S		NM_015204	NP_056019
VPS41	27072	broad.mit.edu	37	7	38857356	38857356	+	Intron	SNP	C	A	A			2011-2311:2012-362-T	g.chr7:38857356C>A	uc003tgy.2	-						VPS41_uc003tgz.2_Intron|VPS41_uc010kxn.2_Intron	NM_014396	NP_055211
GRM8	2918	broad.mit.edu	37	7	126542518	126542518	+	Intron	SNP	A	G	G			2011-2311:2012-362-T	g.chr7:126542518A>G	uc003vlr.2	-						GRM8_uc003vls.2_Intron|GRM8_uc011kof.1_Intron|GRM8_uc003vlt.2_Intron|GRM8_uc010lkz.1_Intron|GRM8_uc003vlu.1_Intron	NM_000845	NP_000836
CNTNAP2	26047	broad.mit.edu	37	7	146471334	146471334	+	Intron	SNP	C	T	T			2011-2311:2012-362-T	g.chr7:146471334C>T	uc003weu.1	+							NM_014141	NP_054860
CNTNAP2	26047	broad.mit.edu	37	7	146997336	146997336	+	Silent	SNP	T	A	A			2011-2311:2012-362-T	g.chr7:146997336T>A	uc003weu.1	+	9	1968	c.1452T>A	c.(1450-1452)ACT>ACA	p.T484T		NM_014141	NP_054860
CNTNAP2	26047	broad.mit.edu	37	7	147092716	147092716	+	Missense_Mutation	SNP	T	C	C			2011-2311:2012-362-T	g.chr7:147092716T>C	uc003weu.1	+	10	2030	c.1514T>C	c.(1513-1515)ATG>ACG	p.M505T		NM_014141	NP_054860
PTPRN2	5799	broad.mit.edu	37	7	157524320	157524320	+	Intron	SNP	C	A	A			2011-2311:2012-362-T	g.chr7:157524320C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
UNC5D	137970	broad.mit.edu	37	8	35631836	35631836	+	Missense_Mutation	SNP	C	A	A			2011-2311:2012-362-T	g.chr8:35631836C>A	uc003xjr.1	+	16	2826	c.2498C>A	c.(2497-2499)ACT>AAT	p.T833N	UNC5D_uc003xjs.1_Missense_Mutation_p.T828N|UNC5D_uc003xju.1_Missense_Mutation_p.T409N	NM_080872	NP_543148
CSMD3	114788	broad.mit.edu	37	8	113662691	113662691	+	Intron	SNP	A	G	G			2011-2311:2012-362-T	g.chr8:113662691A>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
ENPP2	5168	broad.mit.edu	37	8	120628659	120628659	+	Intron	SNP	A	C	C			2011-2311:2012-362-T	g.chr8:120628659A>C	uc003yot.1	-						ENPP2_uc003yos.1_Intron|ENPP2_uc010mdd.1_Intron	NM_001040092	NP_001035181
PHKA2	5256	broad.mit.edu	37	X	18958196	18958196	+	Intron	SNP	C	A	A			2011-2311:2012-362-T	g.chrX:18958196C>A	uc004cyv.3	-							NM_000292	NP_000283
RGAG1	57529	broad.mit.edu	37	X	109695557	109695557	+	Missense_Mutation	SNP	C	A	A			2011-2311:2012-362-T	g.chrX:109695557C>A	uc004eor.1	+	3	1958	c.1712C>A	c.(1711-1713)ACT>AAT	p.T571N	RGAG1_uc011msr.1_Missense_Mutation_p.T571N	NM_020769	NP_065820
ODZ1	10178	broad.mit.edu	37	X	124097654	124097654	+	Translation_Start_Site	SNP	A	C	C			2011-2311:2012-362-T	g.chrX:124097654A>C	uc004euj.2	-	1	13	c.-51T>G	c.(-53--49)ATTAA>ATGAA		ODZ1_uc011muj.1_Translation_Start_Site|ODZ1_uc010nqy.2_Translation_Start_Site	NM_014253	NP_055068
WDR63	126820	broad.mit.edu	37	1	85592296	85592296	+	Missense_Mutation	SNP	T	C	C			2011-2312:2012-361-T	g.chr1:85592296T>C	uc001dkt.2	+	20	2406	c.2215T>C	c.(2215-2217)TAC>CAC	p.Y739H	WDR63_uc009wcl.2_Missense_Mutation_p.Y700H	NM_145172	NP_660155
F7	2155	broad.mit.edu	37	13	113762696	113762696	+	Intron	SNP	T	A	A			2011-2312:2012-361-T	g.chr13:113762696T>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113763406	113763406	+	Intron	SNP	G	A	A			2011-2312:2012-361-T	g.chr13:113763406G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
SYNE2	23224	broad.mit.edu	37	14	64340877	64340877	+	Intron	SNP	A	G	G	rs8016321	by1000genomes	2011-2312:2012-361-T	g.chr14:64340877A>G	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
FOXN3	1112	broad.mit.edu	37	14	89828449	89828449	+	Intron	SNP	G	C	C			2011-2312:2012-361-T	g.chr14:89828449G>C	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
LMF1	64788	broad.mit.edu	37	16	907924	907924	+	Intron	SNP	T	A	A			2011-2312:2012-361-T	g.chr16:907924T>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	907993	907993	+	Intron	SNP	T	A	A			2011-2312:2012-361-T	g.chr16:907993T>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
KLHDC4	54758	broad.mit.edu	37	16	87773092	87773092	+	Intron	SNP	C	T	T			2011-2312:2012-361-T	g.chr16:87773092C>T	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
ABR	29	broad.mit.edu	37	17	1021217	1021217	+	Intron	SNP	C	T	T			2011-2312:2012-361-T	g.chr17:1021217C>T	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
TP53	7157	broad.mit.edu	37	17	7576855	7576855	+	Nonsense_Mutation	SNP	G	A	A			2011-2312:2012-361-T	g.chr17:7576855G>A	uc002gim.2	-	9	1185	c.991C>T	c.(991-993)CAG>TAG	p.Q331*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.Q331*|TP53_uc010cne.1_RNA|TP53_uc010cnf.1_Nonsense_Mutation_p.Q199*|TP53_uc010cng.1_Nonsense_Mutation_p.Q199*|TP53_uc002gii.1_Nonsense_Mutation_p.Q199*|TP53_uc010cnh.1_Nonsense_Mutation_p.Q331*|TP53_uc010cni.1_Nonsense_Mutation_p.Q331*|TP53_uc002gij.2_Nonsense_Mutation_p.Q331*	NM_001126112	NP_001119584
CACNG7	59284	broad.mit.edu	37	19	54424833	54424833	+	Intron	SNP	C	T	T			2011-2312:2012-361-T	g.chr19:54424833C>T	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
CACNG7	59284	broad.mit.edu	37	19	54424886	54424886	+	Intron	SNP	C	T	T			2011-2312:2012-361-T	g.chr19:54424886C>T	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
RMND5A	64795	broad.mit.edu	37	2	87642617	87642617	+	Intron	SNP	G	A	A			2011-2312:2012-361-T	g.chr2:87642617G>A	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179590747	179590747	+	Missense_Mutation	SNP	G	T	T			2011-2312:2012-361-T	g.chr2:179590747G>T	uc010zfg.1	-	67	16794	c.16570C>A	c.(16570-16572)CCT>ACT	p.P5524T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P2185T	NM_133378	NP_596869
C2orf83	56918	broad.mit.edu	37	2	228482399	228482399	+	Intron	SNP	C	T	T			2011-2312:2012-361-T	g.chr2:228482399C>T	uc002vph.2	-						C2orf83_uc010zlu.1_Intron	NM_020161	NP_064546
EP300	2033	broad.mit.edu	37	22	41568480	41568480	+	Intron	SNP	T	C	C	rs2076577	by1000genomes	2011-2312:2012-361-T	g.chr22:41568480T>C	uc003azl.3	+							NM_001429	NP_001420
MLC1	23209	broad.mit.edu	37	22	50500636	50500636	+	Intron	SNP	G	A	A	rs144177767	by1000genomes	2011-2312:2012-361-T	g.chr22:50500636G>A	uc003bjg.1	-						MLC1_uc011arl.1_Intron|MLC1_uc003bjh.1_Intron|MLC1_uc011arm.1_Intron|MLC1_uc011arn.1_Intron|MLC1_uc011aro.1_Intron	NM_139202	NP_631941
SI	6476	broad.mit.edu	37	3	164737487	164737487	+	Missense_Mutation	SNP	T	A	A			2011-2312:2012-361-T	g.chr3:164737487T>A	uc003fei.2	-	28	3388	c.3326A>T	c.(3325-3327)GAA>GTA	p.E1109V		NM_001041	NP_001032
SI	6476	broad.mit.edu	37	3	164796343	164796343	+	5'Flank	SNP	T	C	C	rs7629658	by1000genomes	2011-2312:2012-361-T	g.chr3:164796343T>C	uc003fei.2	-							NM_001041	NP_001032
PCDHA2	56146	broad.mit.edu	37	5	140174708	140174708	+	Silent	SNP	G	A	A			2011-2312:2012-361-T	g.chr5:140174708G>A	uc003lhd.2	+	1	265	c.159G>A	c.(157-159)GGG>GGA	p.G53G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.G53G|PCDHA2_uc011czy.1_Silent_p.G53G	NM_018905	NP_061728
PCDHA2	56146	broad.mit.edu	37	5	140174714	140174714	+	Missense_Mutation	SNP	G	T	T			2011-2312:2012-361-T	g.chr5:140174714G>T	uc003lhd.2	+	1	271	c.165G>T	c.(163-165)GAG>GAT	p.E55D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E55D|PCDHA2_uc011czy.1_Missense_Mutation_p.E55D	NM_018905	NP_061728
HLA-G	3135	broad.mit.edu	37	6	29894580	29894580	+	Intron	SNP	T	G	G	rs113887501		2011-2312:2012-361-T	g.chr6:29894580T>G	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_RNA	NM_002127	NP_002118
SYNE1	23345	broad.mit.edu	37	6	152453094	152453094	+	Intron	SNP	G	A	A	rs2295193	by1000genomes	2011-2312:2012-361-T	g.chr6:152453094G>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
WBSCR17	64409	broad.mit.edu	37	7	70597454	70597454	+	5'Flank	SNP	G	C	C			2011-2312:2012-361-T	g.chr7:70597454G>C	uc003tvy.2	+							NM_022479	NP_071924
WDR86	349136	broad.mit.edu	37	7	151094874	151094874	+	Intron	SNP	A	G	G	rs71531420		2011-2312:2012-361-T	g.chr7:151094874A>G	uc003wkb.2	-						WDR86_uc003wka.2_Intron|WDR86_uc011kvk.1_Intron|WDR86_uc003wkc.2_Intron	NM_198285	NP_938026
PTPRN2	5799	broad.mit.edu	37	7	157509700	157509700	+	Intron	SNP	C	T	T	rs71538050		2011-2312:2012-361-T	g.chr7:157509700C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PDE4DIP	9659	broad.mit.edu	37	1	144892566	144892566	+	Missense_Mutation	SNP	C	T	T	rs151273118		2011-2313:2012-360-T	g.chr1:144892566C>T	uc001elw.3	-	22	3130	c.2839G>A	c.(2839-2841)GAA>AAA	p.E947K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.E1013K|PDE4DIP_uc001emc.1_Missense_Mutation_p.E947K|PDE4DIP_uc001emd.1_Missense_Mutation_p.E947K|PDE4DIP_uc001elv.3_5'UTR|PDE4DIP_uc001emb.1_Missense_Mutation_p.E1110K	NM_014644	NP_055459
USH2A	7399	broad.mit.edu	37	1	215953099	215953099	+	Intron	SNP	C	G	G			2011-2313:2012-360-T	g.chr1:215953099C>G	uc001hku.1	-							NM_206933	NP_996816
MUC2	4583	broad.mit.edu	37	11	1092954	1092954	+	Silent	SNP	G	A	A			2011-2313:2012-360-T	g.chr11:1092954G>A	uc001lsx.1	+	31	11886	c.11859G>A	c.(11857-11859)ACG>ACA	p.T3953T		NM_002457	NP_002448
MUC2	4583	broad.mit.edu	37	11	1092973	1092973	+	Missense_Mutation	SNP	C	T	T			2011-2313:2012-360-T	g.chr11:1092973C>T	uc001lsx.1	+	31	11905	c.11878C>T	c.(11878-11880)CCC>TCC	p.P3960S		NM_002457	NP_002448
ASCL4	121549	broad.mit.edu	37	12	108168272	108168272	+	5'UTR	SNP	G	A	A			2011-2313:2012-360-T	g.chr12:108168272G>A	uc001tmr.2	+	1						NM_203436	NP_982260
F7	2155	broad.mit.edu	37	13	113762077	113762077	+	Intron	SNP	C	G	G			2011-2313:2012-360-T	g.chr13:113762077C>G	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
INO80	54617	broad.mit.edu	37	15	41324206	41324206	+	Intron	SNP	C	G	G			2011-2313:2012-360-T	g.chr15:41324206C>G	uc001zni.2	-						INO80_uc010ucu.1_Intron	NM_017553	NP_060023
LMF1	64788	broad.mit.edu	37	16	999993	999993	+	Intron	SNP	A	C	C			2011-2313:2012-360-T	g.chr16:999993A>C	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
C1QTNF8	390664	broad.mit.edu	37	16	1142977	1142977	+	Intron	SNP	C	G	G			2011-2313:2012-360-T	g.chr16:1142977C>G	uc010uuw.1	-							NM_207419	NP_997302
RPL3L	6123	broad.mit.edu	37	16	1999930	1999930	+	Intron	SNP	A	G	G			2011-2313:2012-360-T	g.chr16:1999930A>G	uc002cnh.2	-							NM_005061	NP_005052
ABAT	18	broad.mit.edu	37	16	8875189	8875189	+	Missense_Mutation	SNP	G	A	A			2011-2313:2012-360-T	g.chr16:8875189G>A	uc002czc.3	+	16	1571	c.1405G>A	c.(1405-1407)GAC>AAC	p.D469N	ABAT_uc002czd.3_Missense_Mutation_p.D469N|ABAT_uc010buh.2_Missense_Mutation_p.D411N|ABAT_uc010bui.2_Missense_Mutation_p.D469N	NM_020686	NP_065737
ANKRD11	29123	broad.mit.edu	37	16	89372186	89372186	+	Intron	SNP	C	T	T			2011-2313:2012-360-T	g.chr16:89372186C>T	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_Intron|ANKRD11_uc002fnf.1_Intron	NM_013275	NP_037407
ANKRD11	29123	broad.mit.edu	37	16	89372197	89372197	+	Intron	SNP	C	T	T			2011-2313:2012-360-T	g.chr16:89372197C>T	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_Intron|ANKRD11_uc002fnf.1_Intron	NM_013275	NP_037407
RPH3AL	9501	broad.mit.edu	37	17	138234	138234	+	Intron	SNP	G	A	A			2011-2313:2012-360-T	g.chr17:138234G>A	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
PRKCA	5578	broad.mit.edu	37	17	64734940	64734940	+	Missense_Mutation	SNP	A	G	G			2011-2313:2012-360-T	g.chr17:64734940A>G	uc002jfp.1	+	11	1333	c.1289A>G	c.(1288-1290)CAG>CGG	p.Q430R	PRKCA_uc002jfo.1_Missense_Mutation_p.Q301R	NM_002737	NP_002728
CACNG7	59284	broad.mit.edu	37	19	54424216	54424216	+	Intron	SNP	C	G	G			2011-2313:2012-360-T	g.chr19:54424216C>G	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
LTBP1	4052	broad.mit.edu	37	2	33359746	33359746	+	Intron	SNP	C	T	T			2011-2313:2012-360-T	g.chr2:33359746C>T	uc002ros.2	+						LTBP1_uc002rot.2_5'UTR|LTBP1_uc002rou.2_5'UTR|LTBP1_uc002rov.2_5'UTR|LTBP1_uc010ymz.1_5'UTR|LTBP1_uc010yna.1_5'UTR	NM_206943	NP_996826
RMND5A	64795	broad.mit.edu	37	2	87623376	87623376	+	Intron	SNP	G	A	A			2011-2313:2012-360-T	g.chr2:87623376G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87633489	87633489	+	Intron	SNP	G	A	A			2011-2313:2012-360-T	g.chr2:87633489G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87634181	87634181	+	Intron	SNP	G	A	A			2011-2313:2012-360-T	g.chr2:87634181G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644696	87644696	+	Intron	SNP	C	G	G			2011-2313:2012-360-T	g.chr2:87644696C>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645932	87645932	+	Intron	SNP	C	T	T			2011-2313:2012-360-T	g.chr2:87645932C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645970	87645970	+	Intron	SNP	C	A	A			2011-2313:2012-360-T	g.chr2:87645970C>A	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179497756	179497756	+	Missense_Mutation	SNP	C	T	T			2011-2313:2012-360-T	g.chr2:179497756C>T	uc010zfg.1	-	183	35622	c.35398G>A	c.(35398-35400)GAG>AAG	p.E11800K	TTN_uc010zfh.1_Missense_Mutation_p.E5495K|TTN_uc010zfi.1_Missense_Mutation_p.E5428K|TTN_uc010zfj.1_Missense_Mutation_p.E5303K	NM_133378	NP_596869
PMS1	5378	broad.mit.edu	37	2	190649449	190649449	+	Intron	SNP	G	A	A			2011-2313:2012-360-T	g.chr2:190649449G>A	uc002urh.3	+						PMS1_uc010zga.1_Intron|PMS1_uc010zgb.1_Intron|PMS1_uc002urk.3_Intron|PMS1_uc002uri.3_Intron|PMS1_uc010zgc.1_Intron|PMS1_uc010zgd.1_Intron|PMS1_uc002urj.2_Intron|ORMDL1_uc002urb.3_5'Flank|ORMDL1_uc002urc.3_5'Flank|ORMDL1_uc002urd.3_5'Flank|ORMDL1_uc002ure.3_5'Flank|ORMDL1_uc002urf.3_5'Flank|PMS1_uc010zfz.1_Intron	NM_000534	NP_000525
MAP2	4133	broad.mit.edu	37	2	210598062	210598062	+	3'UTR	SNP	G	A	A			2011-2313:2012-360-T	g.chr2:210598062G>A	uc002vde.1	+	15					MAP2_uc002vdd.1_3'UTR|MAP2_uc002vdf.1_3'UTR|MAP2_uc002vdg.1_3'UTR|MAP2_uc002vdh.1_3'UTR|MAP2_uc002vdi.1_3'UTR	NM_002374	NP_002365
C20orf26	26074	broad.mit.edu	37	20	20336950	20336950	+	Intron	SNP	G	T	T	rs73607409		2011-2313:2012-360-T	g.chr20:20336950G>T	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
BAGE2	85319	broad.mit.edu	37	21	11049346	11049346	+	Intron	SNP	C	T	T			2011-2313:2012-360-T	g.chr21:11049346C>T	uc002yit.1	-							NM_182482	NP_872288
DSCAM	1826	broad.mit.edu	37	21	41711285	41711285	+	Missense_Mutation	SNP	G	A	A			2011-2313:2012-360-T	g.chr21:41711285G>A	uc002yyq.1	-	7	1720	c.1268C>T	c.(1267-1269)CCG>CTG	p.P423L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380
CHEK2	11200	broad.mit.edu	37	22	29105856	29105856	+	Intron	SNP	G	A	A			2011-2313:2012-360-T	g.chr22:29105856G>A	uc003adu.1	-						CHEK2_uc003ads.1_Intron|CHEK2_uc010gvh.1_Intron|CHEK2_uc010gvi.1_Intron|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_Intron|CHEK2_uc010gvk.1_Intron|CHEK2_uc003adt.1_Intron|CHEK2_uc003adv.1_Intron|CHEK2_uc003adw.1_Intron|CHEK2_uc003adx.1_Intron|CHEK2_uc003ady.1_Intron|CHEK2_uc003adz.1_Intron	NM_007194	NP_009125
SAPS2	9701	broad.mit.edu	37	22	50819744	50819744	+	Intron	SNP	C	T	T			2011-2313:2012-360-T	g.chr22:50819744C>T	uc003blb.1	+						SAPS2_uc003bky.1_Intron|SAPS2_uc003bkz.1_Intron|SAPS2_uc003blc.2_Intron|SAPS2_uc003bla.1_Intron	NM_014678	NP_055493
FANCD2	2177	broad.mit.edu	37	3	10108835	10108835	+	Intron	SNP	T	C	C	rs116962388	by1000genomes	2011-2313:2012-360-T	g.chr3:10108835T>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron	NM_033084	NP_149075
PBRM1	55193	broad.mit.edu	37	3	52696158	52696158	+	Silent	SNP	C	T	T			2011-2313:2012-360-T	g.chr3:52696158C>T	uc003des.2	-	4	531	c.519G>A	c.(517-519)GTG>GTA	p.V173V	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Silent_p.V173V|PBRM1_uc003der.2_Silent_p.V173V|PBRM1_uc003det.2_Silent_p.V173V|PBRM1_uc003deu.2_Silent_p.V173V|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Silent_p.V173V|PBRM1_uc010hmk.1_Silent_p.V173V|PBRM1_uc003dey.2_Silent_p.V173V|PBRM1_uc003dez.1_Silent_p.V173V|PBRM1_uc003dfb.1_Silent_p.V71V	NM_181042	NP_060635
SI	6476	broad.mit.edu	37	3	164777098	164777098	+	Intron	SNP	G	C	C			2011-2313:2012-360-T	g.chr3:164777098G>C	uc003fei.2	-							NM_001041	NP_001032
SI	6476	broad.mit.edu	37	3	164786935	164786935	+	Missense_Mutation	SNP	G	C	C			2011-2313:2012-360-T	g.chr3:164786935G>C	uc003fei.2	-	4	366	c.304C>G	c.(304-306)CTT>GTT	p.L102V		NM_001041	NP_001032
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2011-2313:2012-360-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
MUC4	4585	broad.mit.edu	37	3	195502763	195502763	+	Intron	SNP	A	T	T			2011-2313:2012-360-T	g.chr3:195502763A>T	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
SORBS2	8470	broad.mit.edu	37	4	186717994	186717994	+	Intron	SNP	G	A	A			2011-2313:2012-360-T	g.chr4:186717994G>A	uc003iyl.2	-						SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Intron|SORBS2_uc011cky.1_Intron|SORBS2_uc003iyp.2_Intron	NM_021069	NP_066547
TRIO	7204	broad.mit.edu	37	5	14290805	14290805	+	Intron	SNP	G	A	A	rs30629	by1000genomes	2011-2313:2012-360-T	g.chr5:14290805G>A	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc011cna.1_Intron|TRIO_uc003jfh.1_5'Flank	NM_007118	NP_009049
CDHR2	54825	broad.mit.edu	37	5	176018925	176018925	+	Intron	SNP	T	G	G			2011-2313:2012-360-T	g.chr5:176018925T>G	uc003mem.1	+						CDHR2_uc003men.1_Intron	NM_017675	NP_060145
FAM120B	84498	broad.mit.edu	37	6	170686427	170686427	+	Intron	SNP	T	C	C			2011-2313:2012-360-T	g.chr6:170686427T>C	uc003qxp.2	+						FAM120B_uc003qxo.1_Intron|FAM120B_uc011ehd.1_Intron|FAM120B_uc010kla.1_Intron	NM_032448	NP_115824
PTPRN2	5799	broad.mit.edu	37	7	157524862	157524862	+	Intron	SNP	C	A	A			2011-2313:2012-360-T	g.chr7:157524862C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158067064	158067064	+	Intron	SNP	A	G	G	rs111239251		2011-2313:2012-360-T	g.chr7:158067064A>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PLAG1	5324	broad.mit.edu	37	8	57079603	57079603	+	Silent	SNP	C	T	T			2011-2313:2012-360-T	g.chr8:57079603C>T	uc003xsq.3	-	3	1153	c.702G>A	c.(700-702)AAG>AAA	p.K234K	PLAG1_uc003xsr.3_Silent_p.K234K|PLAG1_uc010lyi.2_Silent_p.K234K|PLAG1_uc010lyj.2_Silent_p.K152K	NM_001114635	NP_001108107
ZFHX4	79776	broad.mit.edu	37	8	77764291	77764291	+	Missense_Mutation	SNP	C	A	A			2011-2313:2012-360-T	g.chr8:77764291C>A	uc003yav.2	+	10	5386	c.4999C>A	c.(4999-5001)CAG>AAG	p.Q1667K	ZFHX4_uc003yau.1_Missense_Mutation_p.Q1712K|ZFHX4_uc003yaw.1_Missense_Mutation_p.Q1667K	NM_024721	NP_078997
CSMD3	114788	broad.mit.edu	37	8	113568881	113568881	+	Intron	SNP	C	T	T			2011-2313:2012-360-T	g.chr8:113568881C>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113966981	113966981	+	Missense_Mutation	SNP	G	T	T			2011-2313:2012-360-T	g.chr8:113966981G>T	uc003ynu.2	-	8	1511	c.1352C>A	c.(1351-1353)GCC>GAC	p.A451D	CSMD3_uc003ynt.2_Missense_Mutation_p.A411D|CSMD3_uc011lhx.1_Missense_Mutation_p.A347D	NM_198123	NP_937756
TRAPPC9	83696	broad.mit.edu	37	8	141120653	141120653	+	Intron	SNP	A	G	G			2011-2313:2012-360-T	g.chr8:141120653A>G	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
ARHGAP39	80728	broad.mit.edu	37	8	145851319	145851319	+	Intron	SNP	C	T	T			2011-2313:2012-360-T	g.chr8:145851319C>T	uc011llk.1	-							NM_025251	NP_079527
NUP214	8021	broad.mit.edu	37	9	134015899	134015899	+	Intron	SNP	C	G	G	rs2281902	by1000genomes	2011-2313:2012-360-T	g.chr9:134015899C>G	uc004cag.2	+						NUP214_uc004cah.2_Intron|NUP214_uc004caf.1_Intron	NM_005085	NP_005076
HEPH	9843	broad.mit.edu	37	X	65423203	65423203	+	Intron	SNP	C	A	A	rs147730802	by1000genomes	2011-2313:2012-360-T	g.chrX:65423203C>A	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron|HEPH_uc010nks.2_5'Flank	NM_138737	NP_620074
SCNN1D	6339	broad.mit.edu	37	1	1223826	1223826	+	Intron	SNP	T	C	C			2011-2314:2012-359-T	g.chr1:1223826T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRDM16	63976	broad.mit.edu	37	1	3296004	3296004	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr1:3296004G>A	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
MEGF6	1953	broad.mit.edu	37	1	3499931	3499931	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr1:3499931C>T	uc001akl.2	-							NM_001409	NP_001400
GRHL3	57822	broad.mit.edu	37	1	24671766	24671766	+	Intron	SNP	C	G	G	rs75399360		2011-2314:2012-359-T	g.chr1:24671766C>G	uc001biy.2	+						GRHL3_uc001bix.2_Intron|GRHL3_uc001biz.2_Intron	NM_021180	NP_067003
COL11A1	1301	broad.mit.edu	37	1	103491867	103491867	+	Missense_Mutation	SNP	C	T	T			2011-2314:2012-359-T	g.chr1:103491867C>T	uc001dul.2	-	6	1120	c.802G>A	c.(802-804)GAA>AAA	p.E268K	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Intron|COL11A1_uc001dun.2_Intron|COL11A1_uc009weh.2_Missense_Mutation_p.E268K	NM_001854	NP_001845
LOC200030	200030	broad.mit.edu	37	1	148346783	148346783	+	5'UTR	SNP	A	G	G			2011-2314:2012-359-T	g.chr1:148346783A>G	uc001eqf.2	-	1					LOC200030_uc001eqe.2_5'UTR|LOC200030_uc001eqg.2_5'UTR|NBPF14_uc009wkf.1_RNA|uc001erd.3_5'UTR|uc001erc.3_RNA|uc010paj.1_5'UTR|uc010pav.1_5'UTR|uc010paw.1_5'UTR	NM_017940	NP_060410
FAIM3	9214	broad.mit.edu	37	1	207097778	207097778	+	5'Flank	SNP	T	C	C			2011-2314:2012-359-T	g.chr1:207097778T>C	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
USH2A	7399	broad.mit.edu	37	1	215824212	215824212	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr1:215824212G>A	uc001hku.1	-							NM_206933	NP_996816
SMYD3	64754	broad.mit.edu	37	1	246139923	246139923	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr1:246139923C>T	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
ADARB2	105	broad.mit.edu	37	10	1502295	1502295	+	Intron	SNP	G	C	C			2011-2314:2012-359-T	g.chr10:1502295G>C	uc009xhq.2	-							NM_018702	NP_061172
ANXA8	653145	broad.mit.edu	37	10	47023295	47023295	+	Intron	SNP	T	C	C			2011-2314:2012-359-T	g.chr10:47023295T>C	uc001jed.3	-								
CRTAC1	55118	broad.mit.edu	37	10	99660522	99660522	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr10:99660522C>T	uc001kou.1	-						CRTAC1_uc001kov.2_Intron|CRTAC1_uc001kot.1_Intron	NM_018058	NP_060528
LHPP	64077	broad.mit.edu	37	10	126299465	126299465	+	Intron	SNP	A	C	C			2011-2314:2012-359-T	g.chr10:126299465A>C	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron|LHPP_uc009yaj.1_Intron	NM_022126	NP_071409
LSP1	4046	broad.mit.edu	37	11	1895165	1895165	+	Intron	SNP	A	G	G	rs111312679		2011-2314:2012-359-T	g.chr11:1895165A>G	uc001lui.2	+						LSP1_uc001luj.2_Intron|LSP1_uc001luk.2_Intron|LSP1_uc001lul.2_Intron|LSP1_uc001lum.2_Intron	NM_002339	NP_002330
NAV3	89795	broad.mit.edu	37	12	78224965	78224965	+	5'Flank	SNP	G	C	C			2011-2314:2012-359-T	g.chr12:78224965G>C	uc001syp.2	+						NAV3_uc001syo.2_5'Flank	NM_014903	NP_055718
RB1	5925	broad.mit.edu	37	13	48955336	48955336	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr13:48955336C>T	uc001vcb.2	+							NM_000321	NP_000312
TDRD3	81550	broad.mit.edu	37	13	61060092	61060092	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr13:61060092C>T	uc001via.2	+						TDRD3_uc010aef.2_Intron|TDRD3_uc001vhz.3_Intron|TDRD3_uc010aeg.2_Intron|TDRD3_uc001vib.3_Intron	NM_030794	NP_110421
FOXN3	1112	broad.mit.edu	37	14	89827177	89827177	+	Intron	SNP	T	C	C			2011-2314:2012-359-T	g.chr14:89827177T>C	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
FOXN3	1112	broad.mit.edu	37	14	89828283	89828283	+	Intron	SNP	T	A	A			2011-2314:2012-359-T	g.chr14:89828283T>A	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
RIN3	79890	broad.mit.edu	37	14	93106449	93106449	+	Intron	SNP	A	G	G			2011-2314:2012-359-T	g.chr14:93106449A>G	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
TMEM8A	58986	broad.mit.edu	37	16	428302	428302	+	Intron	SNP	C	A	A			2011-2314:2012-359-T	g.chr16:428302C>A	uc002cgu.3	-						TMEM8A_uc002cgv.3_Intron	NM_021259	NP_067082
LMF1	64788	broad.mit.edu	37	16	907606	907606	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr16:907606C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908058	908058	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr16:908058G>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	909209	909209	+	Intron	SNP	T	A	A			2011-2314:2012-359-T	g.chr16:909209T>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
CDH11	1009	broad.mit.edu	37	16	65032710	65032710	+	Missense_Mutation	SNP	G	A	A			2011-2314:2012-359-T	g.chr16:65032710G>A	uc002eoi.2	-	4	712	c.278C>T	c.(277-279)TCA>TTA	p.S93L	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.S93L|CDH11_uc010vin.1_5'UTR|CDH11_uc010vio.1_Missense_Mutation_p.S93L	NM_001797	NP_001788
ABR	29	broad.mit.edu	37	17	1046534	1046534	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr17:1046534C>T	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
MYH13	8735	broad.mit.edu	37	17	10219114	10219114	+	Nonsense_Mutation	SNP	G	A	A			2011-2314:2012-359-T	g.chr17:10219114G>A	uc002gmk.1	-	29	3970	c.3880C>T	c.(3880-3882)CGA>TGA	p.R1294*		NM_003802	NP_003793
PRKCA	5578	broad.mit.edu	37	17	64794732	64794732	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr17:64794732G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64794963	64794963	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr17:64794963G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795341	64795341	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr17:64795341G>A	uc002jfp.1	+							NM_002737	NP_002728
KIAA1468	57614	broad.mit.edu	37	18	59949614	59949614	+	Missense_Mutation	SNP	A	G	G			2011-2314:2012-359-T	g.chr18:59949614A>G	uc002lil.2	+	25	3405	c.3190A>G	c.(3190-3192)ACA>GCA	p.T1064A	KIAA1468_uc010xel.1_Missense_Mutation_p.T1064A|KIAA1468_uc002lim.2_Missense_Mutation_p.T742A	NM_020854	NP_065905
BCL2	596	broad.mit.edu	37	18	60865818	60865818	+	Intron	SNP	T	C	C			2011-2314:2012-359-T	g.chr18:60865818T>C	uc002lit.1	-						BCL2_uc002liu.1_Intron	NM_000633	NP_000624
BCL2	596	broad.mit.edu	37	18	60865884	60865884	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr18:60865884C>T	uc002lit.1	-						BCL2_uc002liu.1_Intron	NM_000633	NP_000624
PQLC1	80148	broad.mit.edu	37	18	77676017	77676017	+	Intron	SNP	C	G	G	rs113616038		2011-2314:2012-359-T	g.chr18:77676017C>G	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron|uc002lnm.1_RNA	NM_025078	NP_079354
NLRP12	91662	broad.mit.edu	37	19	54312033	54312033	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr19:54312033C>T	uc002qch.3	-						NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Intron|NLRP12_uc002qcj.3_Intron|NLRP12_uc002qck.3_Intron|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288
TSSC1	7260	broad.mit.edu	37	2	3243877	3243877	+	Intron	SNP	A	G	G			2011-2314:2012-359-T	g.chr2:3243877A>G	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
HPCAL1	3241	broad.mit.edu	37	2	10539414	10539414	+	Intron	SNP	A	T	T			2011-2314:2012-359-T	g.chr2:10539414A>T	uc002raj.2	+						HPCAL1_uc002rak.2_Intron|HPCAL1_uc002ral.2_Intron|HPCAL1_uc010exe.2_Intron|HPCAL1_uc010exf.2_Intron	NM_002149	NP_002140
RMND5A	64795	broad.mit.edu	37	2	87633489	87633489	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr2:87633489G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87634181	87634181	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr2:87634181G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641654	87641654	+	Intron	SNP	C	G	G			2011-2314:2012-359-T	g.chr2:87641654C>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87642514	87642514	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr2:87642514G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644201	87644201	+	Intron	SNP	C	A	A			2011-2314:2012-359-T	g.chr2:87644201C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87656072	87656072	+	Intron	SNP	C	G	G			2011-2314:2012-359-T	g.chr2:87656072C>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87656471	87656471	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr2:87656471C>T	uc002srs.3	+								
PTTG1IP	754	broad.mit.edu	37	21	46283065	46283065	+	Intron	SNP	C	G	G			2011-2314:2012-359-T	g.chr21:46283065C>G	uc002zgb.1	-						PTTG1IP_uc011afj.1_Intron|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330
MICAL3	57553	broad.mit.edu	37	22	18360016	18360016	+	Intron	SNP	T	G	G			2011-2314:2012-359-T	g.chr22:18360016T>G	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
EP300	2033	broad.mit.edu	37	22	41574535	41574535	+	Nonsense_Mutation	SNP	C	T	T			2011-2314:2012-359-T	g.chr22:41574535C>T	uc003azl.3	+	31	7215	c.6820C>T	c.(6820-6822)CAG>TAG	p.Q2274*		NM_001429	NP_001420
CNTN6	27255	broad.mit.edu	37	3	1369185	1369185	+	Silent	SNP	G	C	C			2011-2314:2012-359-T	g.chr3:1369185G>C	uc003boz.2	+	10	1395	c.1128G>C	c.(1126-1128)CTG>CTC	p.L376L	CNTN6_uc011asj.1_Silent_p.L304L|CNTN6_uc003bpa.2_Silent_p.L376L	NM_014461	NP_055276
FANCD2	2177	broad.mit.edu	37	3	10068130	10068130	+	5'UTR	SNP	G	A	A			2011-2314:2012-359-T	g.chr3:10068130G>A	uc003buw.2	+	1					CIDEC_uc003bto.2_5'Flank|FANCD2_uc003bux.1_5'UTR|FANCD2_uc003buy.1_5'Flank|CIDECP_uc003bus.2_5'Flank|CIDECP_uc003but.2_5'Flank|CIDECP_uc003buu.1_5'Flank|FANCD2_uc003buv.2_5'UTR	NM_033084	NP_149075
RAF1	5894	broad.mit.edu	37	3	12706111	12706111	+	5'Flank	SNP	G	A	A			2011-2314:2012-359-T	g.chr3:12706111G>A	uc003bxf.3	-						RAF1_uc011auu.1_5'Flank	NM_002880	NP_002871
EPHA3	2042	broad.mit.edu	37	3	89156378	89156378	+	5'Flank	SNP	G	A	A			2011-2314:2012-359-T	g.chr3:89156378G>A	uc003dqy.2	+						EPHA3_uc003dqx.1_5'Flank|EPHA3_uc010hon.1_5'Flank	NM_005233	NP_005224
PIK3CA	5290	broad.mit.edu	37	3	178916624	178916624	+	Missense_Mutation	SNP	G	A	A			2011-2314:2012-359-T	g.chr3:178916624G>A	uc003fjk.2	+	2	168	c.11G>A	c.(10-12)CGA>CAA	p.R4Q		NM_006218	NP_006209
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2011-2314:2012-359-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
DGKG	1608	broad.mit.edu	37	3	186080448	186080448	+	5'Flank	SNP	C	G	G			2011-2314:2012-359-T	g.chr3:186080448C>G	uc003fqa.2	-						DGKG_uc003fqb.2_5'Flank|DGKG_uc003fqc.2_5'Flank|DGKG_uc011brx.1_5'Flank	NM_001346	NP_001337
TP63	8626	broad.mit.edu	37	3	189455644	189455644	+	Missense_Mutation	SNP	G	A	A			2011-2314:2012-359-T	g.chr3:189455644G>A	uc003fry.2	+	2	267	c.178G>A	c.(178-180)GAT>AAT	p.D60N	TP63_uc003frx.2_Missense_Mutation_p.D60N|TP63_uc003frz.2_Missense_Mutation_p.D60N|TP63_uc010hzc.1_Missense_Mutation_p.D60N	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195504395	195504395	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr3:195504395C>T	uc011bto.1	-						MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FBXW7	55294	broad.mit.edu	37	4	153247096	153247096	+	Intron	SNP	C	A	A			2011-2314:2012-359-T	g.chr4:153247096C>A	uc003ims.2	-						FBXW7_uc011cii.1_Intron|FBXW7_uc003imt.2_Intron|FBXW7_uc011cih.1_Intron|FBXW7_uc003imq.2_Intron|FBXW7_uc003imr.2_Intron	NM_033632	NP_361014
AHRR	57491	broad.mit.edu	37	5	397428	397429	+	Intron	DNP	CT	AC	AC			2011-2314:2012-359-T	g.chr5:397428_397429CT>AC	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
BPHL	670	broad.mit.edu	37	6	3146166	3146166	+	Intron	SNP	T	G	G			2011-2314:2012-359-T	g.chr6:3146166T>G	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
HIST1H4H	8365	broad.mit.edu	37	6	26286087	26286087	+	5'Flank	SNP	G	A	A			2011-2314:2012-359-T	g.chr6:26286087G>A	uc003nhm.2	-						HIST1H4H_uc003nhl.1_5'Flank	NM_003543	NP_003534
HLA-G	3135	broad.mit.edu	37	6	29795951	29795951	+	Silent	SNP	G	A	A			2011-2314:2012-359-T	g.chr6:29795951G>A	uc003nnw.2	+	3	379	c.201G>A	c.(199-201)CCG>CCA	p.P67P	HLA-G_uc011dmb.1_Silent_p.P39P|HLA-G_uc003raj.3_Silent_p.P72P|HLA-G_uc003nnz.3_Silent_p.P67P|HLA-G_uc010jrn.2_Silent_p.P67P|HLA-G_uc003nny.3_RNA|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-A	3105	broad.mit.edu	37	6	29910587	29910587	+	Nonsense_Mutation	SNP	G	T	T	rs41549014		2011-2314:2012-359-T	g.chr6:29910587G>T	uc003nol.2	+	2	127	c.127G>T	c.(127-129)GAG>TAG	p.E43*	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Nonsense_Mutation_p.E43*|HLA-A_uc003noo.2_Nonsense_Mutation_p.E43*|HLA-A_uc010jrr.2_Nonsense_Mutation_p.E43*|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Nonsense_Mutation_p.E15*|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107
SCML4	256380	broad.mit.edu	37	6	108103903	108103903	+	Intron	SNP	C	G	G			2011-2314:2012-359-T	g.chr6:108103903C>G	uc010kdf.2	-						SCML4_uc003prz.3_Intron|SCML4_uc011eam.1_Intron	NM_198081	NP_932347
SDK1	221935	broad.mit.edu	37	7	3621696	3621696	+	Intron	SNP	T	C	C			2011-2314:2012-359-T	g.chr7:3621696T>C	uc003smx.2	+							NM_152744	NP_689957
PCLO	27445	broad.mit.edu	37	7	82595479	82595479	+	Nonsense_Mutation	SNP	G	A	A	rs76361255		2011-2314:2012-359-T	g.chr7:82595479G>A	uc003uhx.2	-	4	3914	c.3625C>T	c.(3625-3627)CAA>TAA	p.Q1209*	PCLO_uc003uhv.2_Nonsense_Mutation_p.Q1209*	NM_033026	NP_149015
PTPRN2	5799	broad.mit.edu	37	7	157851125	157851125	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr7:157851125C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157851140	157851140	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr7:157851140G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PKHD1L1	93035	broad.mit.edu	37	8	110523065	110523065	+	Missense_Mutation	SNP	C	T	T			2011-2314:2012-359-T	g.chr8:110523065C>T	uc003yne.2	+	71	11559	c.11455C>T	c.(11455-11457)CAC>TAC	p.H3819Y		NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113326102	113326102	+	Intron	SNP	G	A	A			2011-2314:2012-359-T	g.chr8:113326102G>A	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc003ynw.1_Intron	NM_198123	NP_937756
TRAPPC9	83696	broad.mit.edu	37	8	141120653	141120653	+	Intron	SNP	A	G	G			2011-2314:2012-359-T	g.chr8:141120653A>G	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
SARDH	1757	broad.mit.edu	37	9	136534026	136534026	+	Intron	SNP	C	T	T			2011-2314:2012-359-T	g.chr9:136534026C>T	uc004cep.3	-						SARDH_uc004ceo.2_Intron|SARDH_uc011mdn.1_Intron|SARDH_uc011mdo.1_Intron|SARDH_uc004cen.2_Intron	NM_001134707	NP_001128179
EHMT1	79813	broad.mit.edu	37	9	140610597	140610597	+	Intron	SNP	G	T	T			2011-2314:2012-359-T	g.chr9:140610597G>T	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
KIAA1751	85452	broad.mit.edu	37	1	1886519	1886519	+	3'UTR	SNP	C	A	A	rs2748975	by1000genomes	2011-2315:2012-358-T	g.chr1:1886519C>A	uc001aim.1	-	18						NM_001080484	NP_001073953
KIF1B	23095	broad.mit.edu	37	1	10386340	10386340	+	Silent	SNP	G	T	T			2011-2315:2012-358-T	g.chr1:10386340G>T	uc001aqx.3	+	27	3049	c.2847G>T	c.(2845-2847)ACG>ACT	p.T949T	KIF1B_uc001aqw.3_Silent_p.T903T|KIF1B_uc001aqy.2_Silent_p.T923T|KIF1B_uc001aqz.2_Silent_p.T949T|KIF1B_uc001ara.2_Silent_p.T909T|KIF1B_uc001arb.2_Silent_p.T935T	NM_015074	NP_055889
C1orf173	127254	broad.mit.edu	37	1	75038587	75038587	+	Missense_Mutation	SNP	C	G	G			2011-2315:2012-358-T	g.chr1:75038587C>G	uc001dgg.2	-	14	3026	c.2807G>C	c.(2806-2808)GGG>GCG	p.G936A		NM_001002912	NP_001002912
C1orf125	126859	broad.mit.edu	37	1	179351889	179351889	+	Silent	SNP	C	A	A			2011-2315:2012-358-T	g.chr1:179351889C>A	uc001gmo.2	+	7	763	c.636C>A	c.(634-636)TCC>TCA	p.S212S	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_5'UTR|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Silent_p.S212S	NM_144696	NP_653297
USH2A	7399	broad.mit.edu	37	1	215844615	215844615	+	Missense_Mutation	SNP	G	T	T			2011-2315:2012-358-T	g.chr1:215844615G>T	uc001hku.1	-	64	14219	c.13832C>A	c.(13831-13833)GCG>GAG	p.A4611E		NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216258049	216258049	+	Missense_Mutation	SNP	G	T	T			2011-2315:2012-358-T	g.chr1:216258049G>T	uc001hku.1	-	25	5545	c.5158C>A	c.(5158-5160)CTA>ATA	p.L1720I		NM_206933	NP_996816
CCNY	219771	broad.mit.edu	37	10	35838419	35838419	+	Intron	SNP	G	A	A			2011-2315:2012-358-T	g.chr10:35838419G>A	uc001iyw.3	+						CCNY_uc001iyu.3_Intron|CCNY_uc001iyv.3_Intron|CCNY_uc001iyx.3_Intron|CCNY_uc009xmb.2_Intron|CCNY_uc010qet.1_Intron	NM_145012	NP_659449
PTEN	5728	broad.mit.edu	37	10	89624042	89624042	+	5'UTR	SNP	T	C	C			2011-2315:2012-358-T	g.chr10:89624042T>C	uc001kfb.2	+	2					KILLIN_uc009xti.2_5'Flank	NM_000314	NP_000305
PTEN	5728	broad.mit.edu	37	10	89624044	89624044	+	5'UTR	SNP	C	A	A			2011-2315:2012-358-T	g.chr10:89624044C>A	uc001kfb.2	+	2					KILLIN_uc009xti.2_5'Flank	NM_000314	NP_000305
PIK3C2G	5288	broad.mit.edu	37	12	18477805	18477805	+	Intron	SNP	G	A	A			2011-2315:2012-358-T	g.chr12:18477805G>A	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron|PIK3C2G_uc010sib.1_Intron|PIK3C2G_uc010sic.1_Intron	NM_004570	NP_004561
MLL2	8085	broad.mit.edu	37	12	49444844	49444844	+	Nonsense_Mutation	SNP	G	T	T			2011-2315:2012-358-T	g.chr12:49444844G>T	uc001rta.3	-	10	2622	c.2622C>A	c.(2620-2622)TGC>TGA	p.C874*		NM_003482	NP_003473
NAV3	89795	broad.mit.edu	37	12	78444519	78444519	+	Intron	SNP	G	T	T			2011-2315:2012-358-T	g.chr12:78444519G>T	uc001syp.2	+						NAV3_uc001syo.2_Intron|NAV3_uc010sub.1_Intron	NM_014903	NP_055718
GALNT9	50614	broad.mit.edu	37	12	132882120	132882120	+	Intron	SNP	C	G	G	rs150356368	by1000genomes	2011-2315:2012-358-T	g.chr12:132882120C>G	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
PCDH17	27253	broad.mit.edu	37	13	58206251	58206251	+	5'UTR	SNP	C	G	G			2011-2315:2012-358-T	g.chr13:58206251C>G	uc001vhq.1	+	1					PCDH17_uc010aec.1_5'UTR	NM_001040429	NP_001035519
LRFN5	145581	broad.mit.edu	37	14	42356114	42356114	+	Missense_Mutation	SNP	G	A	A			2011-2315:2012-358-T	g.chr14:42356114G>A	uc001wvm.2	+	3	1484	c.286G>A	c.(286-288)GCT>ACT	p.A96T	LRFN5_uc010ana.2_Missense_Mutation_p.A96T	NM_152447	NP_689660
SYNE2	23224	broad.mit.edu	37	14	64449333	64449333	+	Intron	SNP	T	C	C			2011-2315:2012-358-T	g.chr14:64449333T>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64657289	64657289	+	Intron	SNP	A	G	G			2011-2315:2012-358-T	g.chr14:64657289A>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron	NM_015180	NP_055995
LMF1	64788	broad.mit.edu	37	16	998857	998857	+	Intron	SNP	C	T	T	rs34349854		2011-2315:2012-358-T	g.chr16:998857C>T	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
RPL3L	6123	broad.mit.edu	37	16	1999729	1999729	+	Intron	SNP	T	G	G			2011-2315:2012-358-T	g.chr16:1999729T>G	uc002cnh.2	-							NM_005061	NP_005052
TUSC5	286753	broad.mit.edu	37	17	1189882	1189882	+	Intron	SNP	C	T	T	rs35316021	by1000genomes	2011-2315:2012-358-T	g.chr17:1189882C>T	uc002fsi.1	+							NM_172367	NP_758955
TP53	7157	broad.mit.edu	37	17	7578526	7578526	+	Missense_Mutation	SNP	C	A	A			2011-2315:2012-358-T	g.chr17:7578526C>A	uc002gim.2	-	5	598	c.404G>T	c.(403-405)TGC>TTC	p.C135F	TP53_uc002gig.1_Missense_Mutation_p.C135F|TP53_uc002gih.2_Missense_Mutation_p.C135F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.C3F|TP53_uc010cng.1_Missense_Mutation_p.C3F|TP53_uc002gii.1_Missense_Mutation_p.C3F|TP53_uc010cnh.1_Missense_Mutation_p.C135F|TP53_uc010cni.1_Missense_Mutation_p.C135F|TP53_uc002gij.2_Missense_Mutation_p.C135F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.C42F|TP53_uc002gio.2_Missense_Mutation_p.C3F|TP53_uc010vug.1_Missense_Mutation_p.C96F	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7579312	7579312	+	Silent	SNP	C	A	A	rs55863639		2011-2315:2012-358-T	g.chr17:7579312C>A	uc002gim.2	-	4	569	c.375G>T	c.(373-375)ACG>ACT	p.T125T	TP53_uc002gig.1_Silent_p.T125T|TP53_uc002gih.2_Silent_p.T125T|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Silent_p.T125T|TP53_uc010cni.1_Silent_p.T125T|TP53_uc002gij.2_Silent_p.T125T|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Silent_p.T86T|TP53_uc010cnk.1_Silent_p.T140T	NM_001126112	NP_001119584
MYH1	4619	broad.mit.edu	37	17	10415361	10415361	+	Intron	SNP	G	T	T			2011-2315:2012-358-T	g.chr17:10415361G>T	uc002gmo.2	-						uc002gml.1_Intron	NM_005963	NP_005954
RSAD1	55316	broad.mit.edu	37	17	48553543	48553543	+	5'Flank	SNP	C	G	G			2011-2315:2012-358-T	g.chr17:48553543C>G	uc002iqw.1	+						RSAD1_uc010wmp.1_5'Flank|RSAD1_uc010wmq.1_5'Flank	NM_018346	NP_060816
PRKCA	5578	broad.mit.edu	37	17	64794846	64794846	+	Intron	SNP	G	A	A			2011-2315:2012-358-T	g.chr17:64794846G>A	uc002jfp.1	+							NM_002737	NP_002728
NLRP4	147945	broad.mit.edu	37	19	56390078	56390078	+	Intron	SNP	C	T	T			2011-2315:2012-358-T	g.chr19:56390078C>T	uc002qmd.3	+						NLRP4_uc002qmf.2_Intron|NLRP4_uc010etf.2_Intron	NM_134444	NP_604393
SMC6	79677	broad.mit.edu	37	2	17846816	17846816	+	Missense_Mutation	SNP	T	C	C			2011-2315:2012-358-T	g.chr2:17846816T>C	uc002rco.2	-	28	3522	c.3226A>G	c.(3226-3228)ACA>GCA	p.T1076A	SMC6_uc010exo.2_Missense_Mutation_p.T1076A|SMC6_uc002rcn.2_Missense_Mutation_p.T1076A	NM_001142286	NP_001135758
APOB	338	broad.mit.edu	37	2	21235150	21235150	+	Silent	SNP	G	A	A			2011-2315:2012-358-T	g.chr2:21235150G>A	uc002red.2	-	26	4718	c.4590C>T	c.(4588-4590)ACC>ACT	p.T1530T		NM_000384	NP_000375
APOB	338	broad.mit.edu	37	2	21248011	21248011	+	Intron	SNP	A	G	G			2011-2315:2012-358-T	g.chr2:21248011A>G	uc002red.2	-							NM_000384	NP_000375
LTBP1	4052	broad.mit.edu	37	2	33588468	33588468	+	Missense_Mutation	SNP	T	C	C			2011-2315:2012-358-T	g.chr2:33588468T>C	uc002ros.2	+	29	4285	c.4285T>C	c.(4285-4287)TGC>CGC	p.C1429R	LTBP1_uc002rot.2_Missense_Mutation_p.C1103R|LTBP1_uc002rou.2_Missense_Mutation_p.C1102R|LTBP1_uc002rov.2_Missense_Mutation_p.C1049R|LTBP1_uc010ymz.1_Missense_Mutation_p.C1060R|LTBP1_uc010yna.1_Missense_Mutation_p.C1007R|LTBP1_uc010ynb.1_Missense_Mutation_p.C326R	NM_206943	NP_996826
RMND5A	64795	broad.mit.edu	37	2	87634178	87634178	+	Intron	SNP	C	A	A			2011-2315:2012-358-T	g.chr2:87634178C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87642551	87642551	+	Intron	SNP	A	G	G			2011-2315:2012-358-T	g.chr2:87642551A>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644201	87644201	+	Intron	SNP	C	A	A			2011-2315:2012-358-T	g.chr2:87644201C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644457	87644457	+	Intron	SNP	C	T	T			2011-2315:2012-358-T	g.chr2:87644457C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645932	87645932	+	Intron	SNP	C	T	T			2011-2315:2012-358-T	g.chr2:87645932C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645997	87645997	+	Intron	SNP	A	G	G			2011-2315:2012-358-T	g.chr2:87645997A>G	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141274739	141274739	+	Intron	SNP	A	T	T			2011-2315:2012-358-T	g.chr2:141274739A>T	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141458125	141458125	+	Missense_Mutation	SNP	G	A	A			2011-2315:2012-358-T	g.chr2:141458125G>A	uc002tvj.1	-	41	7465	c.6493C>T	c.(6493-6495)CGG>TGG	p.R2165W		NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179497826	179497826	+	Intron	SNP	C	T	T			2011-2315:2012-358-T	g.chr2:179497826C>T	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179583190	179583190	+	Missense_Mutation	SNP	C	G	G			2011-2315:2012-358-T	g.chr2:179583190C>G	uc010zfg.1	-	82	21135	c.20911G>C	c.(20911-20913)GAG>CAG	p.E6971Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E3632Q	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179615314	179615314	+	Missense_Mutation	SNP	C	T	T			2011-2315:2012-358-T	g.chr2:179615314C>T	uc002unb.2	-	46	12037	c.11813G>A	c.(11812-11814)CGC>CAC	p.R3938H	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870
TTN	7273	broad.mit.edu	37	2	179647570	179647570	+	Silent	SNP	A	T	T			2011-2315:2012-358-T	g.chr2:179647570A>T	uc010zfg.1	-	18	3287	c.3063T>A	c.(3061-3063)GCT>GCA	p.A1021A	TTN_uc010zfh.1_Silent_p.A975A|TTN_uc010zfi.1_Silent_p.A975A|TTN_uc010zfj.1_Silent_p.A975A|TTN_uc002unb.2_Silent_p.A1021A	NM_133378	NP_596869
PAK7	57144	broad.mit.edu	37	20	9625073	9625073	+	Intron	SNP	C	G	G			2011-2315:2012-358-T	g.chr20:9625073C>G	uc002wnl.2	-						PAK7_uc002wnk.2_Intron|PAK7_uc002wnj.2_Intron|PAK7_uc010gby.1_Intron	NM_020341	NP_065074
C20orf26	26074	broad.mit.edu	37	20	20337725	20337725	+	Intron	SNP	A	G	G			2011-2315:2012-358-T	g.chr20:20337725A>G	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20338161	20338161	+	Intron	SNP	G	A	A			2011-2315:2012-358-T	g.chr20:20338161G>A	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
HUNK	30811	broad.mit.edu	37	21	33291364	33291364	+	Intron	SNP	C	A	A			2011-2315:2012-358-T	g.chr21:33291364C>A	uc002yph.2	+							NM_014586	NP_055401
DSCAM	1826	broad.mit.edu	37	21	42064765	42064765	+	Nonsense_Mutation	SNP	C	T	T			2011-2315:2012-358-T	g.chr21:42064765C>T	uc002yyq.1	-	3	931	c.479G>A	c.(478-480)TGG>TAG	p.W160*	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45196808	45196808	+	Intron	SNP	T	C	C			2011-2315:2012-358-T	g.chr22:45196808T>C	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
CLSTN2	64084	broad.mit.edu	37	3	140185411	140185411	+	Intron	SNP	A	G	G			2011-2315:2012-358-T	g.chr3:140185411A>G	uc003etn.2	+						CLSTN2_uc003etm.2_Intron	NM_022131	NP_071414
SI	6476	broad.mit.edu	37	3	164748599	164748599	+	Missense_Mutation	SNP	C	A	A			2011-2315:2012-358-T	g.chr3:164748599C>A	uc003fei.2	-	25	2855	c.2793G>T	c.(2791-2793)TGG>TGT	p.W931C		NM_001041	NP_001032
BCL6	604	broad.mit.edu	37	3	187447017	187447017	+	Silent	SNP	T	A	A			2011-2315:2012-358-T	g.chr3:187447017T>A	uc003frp.3	-	5	1633	c.1176A>T	c.(1174-1176)CCA>CCT	p.P392P	BCL6_uc011bsf.1_Silent_p.P392P|BCL6_uc010hza.2_Silent_p.P290P|BCL6_uc003frq.1_Silent_p.P392P	NM_001130845	NP_001124317
SORCS2	57537	broad.mit.edu	37	4	7455225	7455225	+	Intron	SNP	A	G	G			2011-2315:2012-358-T	g.chr4:7455225A>G	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
SORCS2	57537	broad.mit.edu	37	4	7707915	7707915	+	Intron	SNP	C	T	T			2011-2315:2012-358-T	g.chr4:7707915C>T	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
KCTD8	386617	broad.mit.edu	37	4	44176814	44176814	+	Missense_Mutation	SNP	C	A	A			2011-2315:2012-358-T	g.chr4:44176814C>A	uc003gwu.2	-	2	1699	c.1415G>T	c.(1414-1416)GGG>GTG	p.G472V		NM_198353	NP_938167
DNAH5	1767	broad.mit.edu	37	5	13776478	13776478	+	Intron	SNP	C	T	T			2011-2315:2012-358-T	g.chr5:13776478C>T	uc003jfd.2	-							NM_001369	NP_001360
CDH12	1010	broad.mit.edu	37	5	21751968	21751968	+	Missense_Mutation	SNP	C	A	A			2011-2315:2012-358-T	g.chr5:21751968C>A	uc010iuc.2	-	12	2721	c.2263G>T	c.(2263-2265)GAC>TAC	p.D755Y	CDH12_uc011cno.1_Missense_Mutation_p.D715Y|CDH12_uc003jgk.2_Missense_Mutation_p.D755Y|uc003jgj.2_Intron	NM_004061	NP_004052
CDH12	1010	broad.mit.edu	37	5	21752277	21752277	+	Missense_Mutation	SNP	C	T	T			2011-2315:2012-358-T	g.chr5:21752277C>T	uc010iuc.2	-	12	2412	c.1954G>A	c.(1954-1956)GAC>AAC	p.D652N	CDH12_uc011cno.1_Missense_Mutation_p.D612N|CDH12_uc003jgk.2_Missense_Mutation_p.D652N|uc003jgj.2_Intron	NM_004061	NP_004052
NSD1	64324	broad.mit.edu	37	5	176637228	176637228	+	Nonsense_Mutation	SNP	C	T	T			2011-2315:2012-358-T	g.chr5:176637228C>T	uc003mfr.3	+	5	1966	c.1828C>T	c.(1828-1830)CAA>TAA	p.Q610*	NSD1_uc003mft.3_Nonsense_Mutation_p.Q341*|NSD1_uc003mfs.1_Nonsense_Mutation_p.Q507*|NSD1_uc011dfx.1_Nonsense_Mutation_p.Q258*	NM_022455	NP_071900
DST	667	broad.mit.edu	37	6	56480764	56480764	+	Intron	SNP	C	A	A			2011-2315:2012-358-T	g.chr6:56480764C>A	uc003pdf.2	-						DST_uc003pcz.3_Intron|DST_uc011dxj.1_Intron|DST_uc011dxk.1_Intron|DST_uc003pcy.3_Intron|DST_uc003pdb.2_Intron|DST_uc003pdc.3_Missense_Mutation_p.A2501S	NM_001144769	NP_001138241
SYNE1	23345	broad.mit.edu	37	6	152466798	152466798	+	Intron	SNP	G	C	C			2011-2315:2012-358-T	g.chr6:152466798G>C	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
CARD11	84433	broad.mit.edu	37	7	2977554	2977554	+	Missense_Mutation	SNP	C	T	T			2011-2315:2012-358-T	g.chr7:2977554C>T	uc003smv.2	-	8	1534	c.1130G>A	c.(1129-1131)CGG>CAG	p.R377Q		NM_032415	NP_115791
RELN	5649	broad.mit.edu	37	7	103270488	103270488	+	Silent	SNP	G	A	A			2011-2315:2012-358-T	g.chr7:103270488G>A	uc003vca.2	-	20	2761	c.2601C>T	c.(2599-2601)AAC>AAT	p.N867N	RELN_uc010liz.2_Silent_p.N867N	NM_005045	NP_005036
PIK3CG	5294	broad.mit.edu	37	7	106513520	106513520	+	Intron	SNP	T	C	C			2011-2315:2012-358-T	g.chr7:106513520T>C	uc003vdv.3	+						PIK3CG_uc003vdu.2_Intron|PIK3CG_uc003vdw.2_Intron	NM_002649	NP_002640
PTPRN2	5799	broad.mit.edu	37	7	157851974	157851974	+	Intron	SNP	C	T	T			2011-2315:2012-358-T	g.chr7:157851974C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158295597	158295597	+	Intron	SNP	C	A	A			2011-2315:2012-358-T	g.chr7:158295597C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
HOOK3	84376	broad.mit.edu	37	8	42865619	42865619	+	Intron	SNP	G	A	A			2011-2315:2012-358-T	g.chr8:42865619G>A	uc003xpr.2	+							NM_032410	NP_115786
UBXN2B	137886	broad.mit.edu	37	8	59338565	59338565	+	Intron	SNP	C	T	T			2011-2315:2012-358-T	g.chr8:59338565C>T	uc003xtl.2	+							NM_001077619	NP_001071087
SLCO5A1	81796	broad.mit.edu	37	8	70744116	70744116	+	Missense_Mutation	SNP	C	A	A			2011-2315:2012-358-T	g.chr8:70744116C>A	uc003xyl.2	-	2	1500	c.793G>T	c.(793-795)GCT>TCT	p.A265S	SLCO5A1_uc010lzb.2_Missense_Mutation_p.A265S|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Missense_Mutation_p.A265S|SLCO5A1_uc010lzc.2_Missense_Mutation_p.A265S	NM_030958	NP_112220
ZFHX4	79776	broad.mit.edu	37	8	77764435	77764435	+	Missense_Mutation	SNP	G	T	T			2011-2315:2012-358-T	g.chr8:77764435G>T	uc003yav.2	+	10	5530	c.5143G>T	c.(5143-5145)GCC>TCC	p.A1715S	ZFHX4_uc003yau.1_Missense_Mutation_p.A1760S|ZFHX4_uc003yaw.1_Missense_Mutation_p.A1715S	NM_024721	NP_078997
UBR5	51366	broad.mit.edu	37	8	103305937	103305937	+	Silent	SNP	T	A	A			2011-2315:2012-358-T	g.chr8:103305937T>A	uc003ykr.1	-	34	4518	c.4485A>T	c.(4483-4485)GCA>GCT	p.A1495A	UBR5_uc003yks.1_Silent_p.A1495A	NM_015902	NP_056986
UBR5	51366	broad.mit.edu	37	8	103306406	103306406	+	Intron	SNP	T	A	A			2011-2315:2012-358-T	g.chr8:103306406T>A	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
PKHD1L1	93035	broad.mit.edu	37	8	110478991	110478991	+	Missense_Mutation	SNP	C	A	A			2011-2315:2012-358-T	g.chr8:110478991C>A	uc003yne.2	+	50	8702	c.8598C>A	c.(8596-8598)GAC>GAA	p.D2866E		NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113668405	113668405	+	Missense_Mutation	SNP	A	T	T			2011-2315:2012-358-T	g.chr8:113668405A>T	uc003ynu.2	-	18	3141	c.2982T>A	c.(2980-2982)AAT>AAA	p.N994K	CSMD3_uc003yns.2_Missense_Mutation_p.N266K|CSMD3_uc003ynt.2_Missense_Mutation_p.N954K|CSMD3_uc011lhx.1_Missense_Mutation_p.N890K	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	114449034	114449034	+	Missense_Mutation	SNP	C	A	A			2011-2315:2012-358-T	g.chr8:114449034C>A	uc003ynu.2	-	1	209	c.50G>T	c.(49-51)TGG>TTG	p.W17L	CSMD3_uc011lhx.1_Missense_Mutation_p.W17L|CSMD3_uc010mcx.1_Missense_Mutation_p.W17L|CSMD3_uc003ynx.3_Missense_Mutation_p.W17L	NM_198123	NP_937756
HUWE1	10075	broad.mit.edu	37	X	53658957	53658957	+	Intron	SNP	T	G	G			2011-2315:2012-358-T	g.chrX:53658957T>G	uc004dsp.2	-							NM_031407	NP_113584
MAGEC1	9947	broad.mit.edu	37	X	140991165	140991165	+	5'Flank	SNP	C	A	A			2011-2315:2012-358-T	g.chrX:140991165C>A	uc004fbt.2	+						MAGEC1_uc010nsl.1_5'Flank	NM_005462	NP_005453
MAGEC2	51438	broad.mit.edu	37	X	141293473	141293473	+	5'Flank	SNP	G	A	A			2011-2315:2012-358-T	g.chrX:141293473G>A	uc004fbu.1	-							NM_016249	NP_057333
AGRN	375790	broad.mit.edu	37	1	966193	966193	+	Intron	SNP	A	G	G			2011-2316:2012-312-T	g.chr1:966193A>G	uc001ack.1	+							NM_198576	NP_940978
SPTA1	6708	broad.mit.edu	37	1	158612606	158612606	+	Nonsense_Mutation	SNP	G	A	A			2011-2316:2012-312-T	g.chr1:158612606G>A	uc001fst.1	-	32	4802	c.4603C>T	c.(4603-4605)CAG>TAG	p.Q1535*		NM_003126	NP_003117
USH2A	7399	broad.mit.edu	37	1	216495464	216495464	+	Intron	SNP	G	T	T			2011-2316:2012-312-T	g.chr1:216495464G>T	uc001hku.1	-						USH2A_uc001hkv.2_Intron	NM_206933	NP_996816
RYR2	6262	broad.mit.edu	37	1	237219619	237219619	+	Intron	SNP	G	C	C			2011-2316:2012-312-T	g.chr1:237219619G>C	uc001hyl.1	+							NM_001035	NP_001026
RYR2	6262	broad.mit.edu	37	1	237219632	237219632	+	Intron	SNP	A	G	G			2011-2316:2012-312-T	g.chr1:237219632A>G	uc001hyl.1	+							NM_001035	NP_001026
OR8H2	390151	broad.mit.edu	37	11	55872201	55872201	+	5'Flank	SNP	C	A	A			2011-2316:2012-312-T	g.chr11:55872201C>A	uc010riy.1	+							NM_001005200	NP_001005200
MRE11A	4361	broad.mit.edu	37	11	94225920	94225920	+	Intron	SNP	C	T	T	rs497763	by1000genomes	2011-2316:2012-312-T	g.chr11:94225920C>T	uc001peu.2	-						MRE11A_uc001pev.2_Intron|MRE11A_uc009ywj.2_5'UTR|ANKRD49_uc001pew.2_5'Flank|ANKRD49_uc001pex.2_5'Flank	NM_005591	NP_005582
ATM	472	broad.mit.edu	37	11	108172401	108172401	+	Missense_Mutation	SNP	C	A	A			2011-2316:2012-312-T	g.chr11:108172401C>A	uc001pkb.1	+	35	5589	c.5204C>A	c.(5203-5205)ACC>AAC	p.T1735N	ATM_uc009yxr.1_Missense_Mutation_p.T1735N|ATM_uc001pke.1_Missense_Mutation_p.T387N|ATM_uc001pkg.1_Missense_Mutation_p.T92N	NM_000051	NP_000042
PZP	5858	broad.mit.edu	37	12	9305424	9305424	+	Missense_Mutation	SNP	T	G	G			2011-2316:2012-312-T	g.chr12:9305424T>G	uc001qvl.2	-	31	4146	c.4117A>C	c.(4117-4119)ATC>CTC	p.I1373L	PZP_uc009zgl.2_Missense_Mutation_p.I1159L	NM_002864	NP_002855
PDE3A	5139	broad.mit.edu	37	12	20792792	20792792	+	Missense_Mutation	SNP	C	A	A			2011-2316:2012-312-T	g.chr12:20792792C>A	uc001reh.1	+	10	2174	c.2152C>A	c.(2152-2154)CTT>ATT	p.L718I		NM_000921	NP_000912
NCOR2	9612	broad.mit.edu	37	12	124952711	124952711	+	Intron	SNP	C	A	A			2011-2316:2012-312-T	g.chr12:124952711C>A	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
NCOR2	9612	broad.mit.edu	37	12	124952725	124952725	+	Intron	SNP	C	T	T			2011-2316:2012-312-T	g.chr12:124952725C>T	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
GPR133	283383	broad.mit.edu	37	12	131613783	131613783	+	Intron	SNP	G	C	C			2011-2316:2012-312-T	g.chr12:131613783G>C	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc009zyp.2_Intron	NM_198827	NP_942122
FANCM	57697	broad.mit.edu	37	14	45605287	45605287	+	Missense_Mutation	SNP	G	T	T	rs146609069	byFrequency	2011-2316:2012-312-T	g.chr14:45605287G>T	uc001wwd.3	+	1	152	c.53G>T	c.(52-54)CGA>CTA	p.R18L	FANCM_uc001wwc.2_Missense_Mutation_p.R18L|FANCM_uc010anf.2_Missense_Mutation_p.R18L|FKBP3_uc010tqf.1_5'Flank	NM_020937	NP_065988
NRXN3	9369	broad.mit.edu	37	14	79746418	79746418	+	Intron	SNP	G	A	A			2011-2316:2012-312-T	g.chr14:79746418G>A	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_5'UTR|NRXN3_uc010asw.2_5'UTR|NRXN3_uc001xur.3_5'UTR	NM_004796	NP_004787
AKT1	207	broad.mit.edu	37	14	105239254	105239254	+	Missense_Mutation	SNP	G	C	C			2011-2316:2012-312-T	g.chr14:105239254G>C	uc001ypk.2	-	11	1687	c.1133C>G	c.(1132-1134)TCC>TGC	p.S378C	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Missense_Mutation_p.S378C|AKT1_uc010axa.2_Missense_Mutation_p.S378C|AKT1_uc001ypm.2_Missense_Mutation_p.S378C|AKT1_uc001ypn.2_Missense_Mutation_p.S378C|AKT1_uc001ypj.2_5'Flank|AKT1_uc010tyk.1_Missense_Mutation_p.S316C	NM_005163	NP_005154
LMF1	64788	broad.mit.edu	37	16	907583	907583	+	Intron	SNP	C	T	T	rs144035372		2011-2316:2012-312-T	g.chr16:907583C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	907606	907606	+	Intron	SNP	C	T	T			2011-2316:2012-312-T	g.chr16:907606C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1002863	1002863	+	Intron	SNP	A	C	C	rs75397517	by1000genomes	2011-2316:2012-312-T	g.chr16:1002863A>C	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
SPIRE2	84501	broad.mit.edu	37	16	89919182	89919182	+	Intron	SNP	G	A	A			2011-2316:2012-312-T	g.chr16:89919182G>A	uc002foz.1	+						SPIRE2_uc010civ.1_Intron|SPIRE2_uc010ciw.1_Intron|SPIRE2_uc002fpa.1_Intron|SPIRE2_uc010cix.1_Intron	NM_032451	NP_115827
RPH3AL	9501	broad.mit.edu	37	17	95170	95170	+	Intron	SNP	G	A	A			2011-2316:2012-312-T	g.chr17:95170G>A	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	1021130	1021130	+	Intron	SNP	T	C	C			2011-2316:2012-312-T	g.chr17:1021130T>C	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1022610	1022610	+	Intron	SNP	C	T	T			2011-2316:2012-312-T	g.chr17:1022610C>T	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
P2RX5	5026	broad.mit.edu	37	17	3583760	3583760	+	Intron	SNP	A	G	G	rs112686978		2011-2316:2012-312-T	g.chr17:3583760A>G	uc002fwi.2	-						P2RX5_uc002fwd.2_Intron|P2RX5_uc002fwh.1_Intron|P2RX5_uc010vrx.1_Intron|P2RX5_uc002fwj.2_Intron|P2RX5_uc002fwk.2_Intron|P2RX5_uc002fwl.2_Intron	NM_002561	NP_002552
MYH1	4619	broad.mit.edu	37	17	10402357	10402357	+	Silent	SNP	C	T	T			2011-2316:2012-312-T	g.chr17:10402357C>T	uc002gmo.2	-	29	4012	c.3918G>A	c.(3916-3918)TCG>TCA	p.S1306S	uc002gml.1_Intron	NM_005963	NP_005954
STAT3	6774	broad.mit.edu	37	17	40486093	40486093	+	Intron	SNP	A	T	T			2011-2316:2012-312-T	g.chr17:40486093A>T	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
PRKCA	5578	broad.mit.edu	37	17	64795160	64795160	+	Intron	SNP	G	A	A			2011-2316:2012-312-T	g.chr17:64795160G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795513	64795513	+	Intron	SNP	T	A	A			2011-2316:2012-312-T	g.chr17:64795513T>A	uc002jfp.1	+							NM_002737	NP_002728
ZNF443	10224	broad.mit.edu	37	19	12542333	12542333	+	Missense_Mutation	SNP	G	A	A	rs143162114	byFrequency;by1000genomes	2011-2316:2012-312-T	g.chr19:12542333G>A	uc002mtu.2	-	4	851	c.653C>T	c.(652-654)ACG>ATG	p.T218M		NM_005815	NP_005806
CACNG7	59284	broad.mit.edu	37	19	54427233	54427233	+	Intron	SNP	G	T	T			2011-2316:2012-312-T	g.chr19:54427233G>T	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
CACNG7	59284	broad.mit.edu	37	19	54427242	54427242	+	Intron	SNP	C	T	T	rs74973062		2011-2316:2012-312-T	g.chr19:54427242C>T	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
MYT1L	23040	broad.mit.edu	37	2	1935170	1935170	+	Intron	SNP	C	T	T			2011-2316:2012-312-T	g.chr2:1935170C>T	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
HDAC4	9759	broad.mit.edu	37	2	240204069	240204069	+	Intron	SNP	C	T	T			2011-2316:2012-312-T	g.chr2:240204069C>T	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron	NM_006037	NP_006028
RRBP1	6238	broad.mit.edu	37	20	17639864	17639864	+	Intron	SNP	T	C	C			2011-2316:2012-312-T	g.chr20:17639864T>C	uc002wpv.1	-						RRBP1_uc002wpu.2_5'Flank|RRBP1_uc002wpw.1_Intron|RRBP1_uc010gcl.1_Intron	NM_001042576	NP_001036041
CDH4	1002	broad.mit.edu	37	20	59839912	59839912	+	Intron	SNP	C	T	T			2011-2316:2012-312-T	g.chr20:59839912C>T	uc002ybn.1	+							NM_001794	NP_001785
CDH4	1002	broad.mit.edu	37	20	59839921	59839921	+	Intron	SNP	T	C	C			2011-2316:2012-312-T	g.chr20:59839921T>C	uc002ybn.1	+							NM_001794	NP_001785
MPPED1	758	broad.mit.edu	37	22	43892319	43892319	+	Intron	SNP	G	A	A			2011-2316:2012-312-T	g.chr22:43892319G>A	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
SULT4A1	25830	broad.mit.edu	37	22	44231012	44231012	+	Intron	SNP	A	T	T			2011-2316:2012-312-T	g.chr22:44231012A>T	uc003bee.1	-						SULT4A1_uc003bed.1_Intron|SULT4A1_uc003bef.1_Intron|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166
SAPS2	9701	broad.mit.edu	37	22	50844264	50844264	+	Intron	SNP	T	C	C			2011-2316:2012-312-T	g.chr22:50844264T>C	uc003blb.1	+						SAPS2_uc003bky.1_Intron|SAPS2_uc003bkz.1_Intron|SAPS2_uc003blc.2_Intron|SAPS2_uc003bla.1_Intron	NM_014678	NP_055493
CELSR3	1951	broad.mit.edu	37	3	48694620	48694620	+	Missense_Mutation	SNP	C	T	T			2011-2316:2012-312-T	g.chr3:48694620C>T	uc003cul.2	-	2	4191	c.3910G>A	c.(3910-3912)GCT>ACT	p.A1304T	CELSR3_uc003cuf.1_Missense_Mutation_p.A1374T	NM_001407	NP_001398
MUC4	4585	broad.mit.edu	37	3	195498208	195498209	+	Intron	DNP	TT	CC	CC	rs112809092		2011-2316:2012-312-T	g.chr3:195498208_195498209TT>CC	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
CEP72	55722	broad.mit.edu	37	5	648365	648365	+	Intron	SNP	G	A	A			2011-2316:2012-312-T	g.chr5:648365G>A	uc003jbf.2	+							NM_018140	NP_060610
SYNE1	23345	broad.mit.edu	37	6	152462431	152462431	+	Missense_Mutation	SNP	C	A	A			2011-2316:2012-312-T	g.chr6:152462431C>A	uc010kiw.2	-	139	25755	c.25153G>T	c.(25153-25155)GAC>TAC	p.D8385Y	SYNE1_uc010kiv.2_Missense_Mutation_p.D2909Y|SYNE1_uc003qos.3_Missense_Mutation_p.D2909Y|SYNE1_uc003qot.3_Missense_Mutation_p.D8337Y|SYNE1_uc003qou.3_Missense_Mutation_p.D8385Y|SYNE1_uc003qop.3_Missense_Mutation_p.D570Y|SYNE1_uc011eez.1_Missense_Mutation_p.D587Y|SYNE1_uc003qoq.3_Missense_Mutation_p.D587Y|SYNE1_uc003qor.3_Missense_Mutation_p.D1308Y	NM_182961	NP_892006
ADAP1	11033	broad.mit.edu	37	7	982255	982255	+	Intron	SNP	A	T	T			2011-2316:2012-312-T	g.chr7:982255A>T	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	157660017	157660017	+	Intron	SNP	T	C	C			2011-2316:2012-312-T	g.chr7:157660017T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158112286	158112286	+	Intron	SNP	C	T	T	rs113458596	by1000genomes	2011-2316:2012-312-T	g.chr7:158112286C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158112323	158112324	+	Intron	DNP	AC	GT	GT			2011-2316:2012-312-T	g.chr7:158112323_158112324AC>GT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ZFHX4	79776	broad.mit.edu	37	8	77618329	77618329	+	Missense_Mutation	SNP	A	C	C			2011-2316:2012-312-T	g.chr8:77618329A>C	uc003yav.2	+	2	2393	c.2006A>C	c.(2005-2007)GAG>GCG	p.E669A	ZFHX4_uc003yat.1_Missense_Mutation_p.E669A|ZFHX4_uc003yau.1_Missense_Mutation_p.E669A|ZFHX4_uc003yaw.1_Missense_Mutation_p.E669A	NM_024721	NP_078997
PARP10	84875	broad.mit.edu	37	8	145055677	145055677	+	Intron	SNP	G	A	A	rs143266606	by1000genomes	2011-2316:2012-312-T	g.chr8:145055677G>A	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
PARP10	84875	broad.mit.edu	37	8	145055693	145055693	+	Intron	SNP	C	T	T			2011-2316:2012-312-T	g.chr8:145055693C>T	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
LINGO2	158038	broad.mit.edu	37	9	28189443	28189443	+	Intron	SNP	G	A	A			2011-2316:2012-312-T	g.chr9:28189443G>A	uc003zqu.1	-						LINGO2_uc010mjf.1_Intron|LINGO2_uc003zqv.1_Intron	NM_152570	NP_689783
LINGO2	158038	broad.mit.edu	37	9	28189463	28189463	+	Intron	SNP	G	A	A			2011-2316:2012-312-T	g.chr9:28189463G>A	uc003zqu.1	-						LINGO2_uc010mjf.1_Intron|LINGO2_uc003zqv.1_Intron	NM_152570	NP_689783
EXD3	54932	broad.mit.edu	37	9	140276573	140276573	+	Intron	SNP	G	T	T			2011-2316:2012-312-T	g.chr9:140276573G>T	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncg.1_Intron|EXD3_uc004cmr.2_Intron|EXD3_uc004cms.2_Intron	NM_017820	NP_060290
EHMT1	79813	broad.mit.edu	37	9	140615768	140615768	+	Intron	SNP	A	G	G			2011-2316:2012-312-T	g.chr9:140615768A>G	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
PPP2R3B	28227	broad.mit.edu	37	X	303305	303305	+	Intron	SNP	T	G	G			2011-2316:2012-312-T	g.chrX:303305T>G	uc004cpg.2	-						PPP2R3B_uc004cpf.2_5'Flank	NM_013239	NP_037371
ADARB2	105	broad.mit.edu	37	10	1282121	1282121	+	Intron	SNP	T	C	C			2011-2317:2012-357-T	g.chr10:1282121T>C	uc009xhq.2	-							NM_018702	NP_061172
ADARB2	105	broad.mit.edu	37	10	1282209	1282209	+	Intron	SNP	T	C	C			2011-2317:2012-357-T	g.chr10:1282209T>C	uc009xhq.2	-							NM_018702	NP_061172
CDH23	64072	broad.mit.edu	37	10	73448668	73448668	+	Intron	SNP	C	T	T			2011-2317:2012-357-T	g.chr10:73448668C>T	uc001jrx.3	+						CDH23_uc001jry.2_Intron|CDH23_uc001jrz.2_Intron	NM_022124	NP_071407
LHPP	64077	broad.mit.edu	37	10	126299189	126299189	+	Intron	SNP	A	C	C			2011-2317:2012-357-T	g.chr10:126299189A>C	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron|LHPP_uc009yaj.1_Intron	NM_022126	NP_071409
OR51S1	119692	broad.mit.edu	37	11	4870604	4870604	+	5'Flank	SNP	C	T	T	rs34301246	by1000genomes	2011-2317:2012-357-T	g.chr11:4870604C>T	uc010qyo.1	-							NM_001004758	NP_001004758
TPCN2	219931	broad.mit.edu	37	11	68844204	68844204	+	Intron	SNP	C	T	T			2011-2317:2012-357-T	g.chr11:68844204C>T	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_Intron	NM_139075	NP_620714
SHANK2	22941	broad.mit.edu	37	11	70633508	70633508	+	Intron	SNP	A	G	G			2011-2317:2012-357-T	g.chr11:70633508A>G	uc001oqc.2	-							NM_012309	NP_036441
PHLDB1	23187	broad.mit.edu	37	11	118480115	118480115	+	Intron	SNP	G	C	C	rs12803321	by1000genomes	2011-2317:2012-357-T	g.chr11:118480115G>C	uc001ptr.1	+						PHLDB1_uc010ryh.1_Intron|PHLDB1_uc001pts.2_Intron|PHLDB1_uc001ptt.2_Intron|PHLDB1_uc001ptu.1_Intron	NM_015157	NP_055972
TSPAN9	10867	broad.mit.edu	37	12	3377872	3377872	+	Intron	SNP	G	C	C	rs78198836		2011-2317:2012-357-T	g.chr12:3377872G>C	uc001qlp.2	+							NM_006675	NP_006666
TSPAN9	10867	broad.mit.edu	37	12	3377875	3377875	+	Intron	SNP	C	T	T	rs76013798	by1000genomes	2011-2317:2012-357-T	g.chr12:3377875C>T	uc001qlp.2	+							NM_006675	NP_006666
SPIC	121599	broad.mit.edu	37	12	101870427	101870427	+	Intron	SNP	C	A	A	rs7978858	by1000genomes	2011-2317:2012-357-T	g.chr12:101870427C>A	uc001tid.2	+						SPIC_uc009zua.2_5'Flank|SPIC_uc010svp.1_5'Flank	NM_152323	NP_689536
GRK1	6011	broad.mit.edu	37	13	114431021	114431021	+	Intron	SNP	C	T	T			2011-2317:2012-357-T	g.chr13:114431021C>T	uc010tkf.1	+							NM_002929	NP_002920
FANCM	57697	broad.mit.edu	37	14	45605129	45605129	+	5'Flank	SNP	C	A	A			2011-2317:2012-357-T	g.chr14:45605129C>A	uc001wwd.3	+						FANCM_uc001wwc.2_5'Flank|FANCM_uc010anf.2_5'Flank|FKBP3_uc010tqf.1_5'Flank	NM_020937	NP_065988
SYNE2	23224	broad.mit.edu	37	14	64468918	64468918	+	Intron	SNP	G	A	A	rs12147217	by1000genomes	2011-2317:2012-357-T	g.chr14:64468918G>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	T	T	rs11540652		2011-2317:2012-357-T	g.chr17:7577538C>T	uc002gim.2	-	7	937	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	TP53_uc002gig.1_Missense_Mutation_p.R248Q|TP53_uc002gih.2_Missense_Mutation_p.R248Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116Q|TP53_uc010cng.1_Missense_Mutation_p.R116Q|TP53_uc002gii.1_Missense_Mutation_p.R116Q|TP53_uc010cnh.1_Missense_Mutation_p.R248Q|TP53_uc010cni.1_Missense_Mutation_p.R248Q|TP53_uc002gij.2_Missense_Mutation_p.R248Q|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155Q|TP53_uc002gio.2_Missense_Mutation_p.R116Q	NM_001126112	NP_001119584
PRKCA	5578	broad.mit.edu	37	17	64737717	64737717	+	Intron	SNP	T	A	A	rs3803821	by1000genomes	2011-2317:2012-357-T	g.chr17:64737717T>A	uc002jfp.1	+						PRKCA_uc002jfo.1_Intron	NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64800187	64800187	+	3'UTR	SNP	C	T	T	rs62621676	byFrequency;by1000genomes	2011-2317:2012-357-T	g.chr17:64800187C>T	uc002jfp.1	+	17						NM_002737	NP_002728
DOK6	220164	broad.mit.edu	37	18	67266636	67266636	+	Missense_Mutation	SNP	A	T	T			2011-2317:2012-357-T	g.chr18:67266636A>T	uc002lkl.2	+	3	381	c.191A>T	c.(190-192)AAT>ATT	p.N64I		NM_152721	NP_689934
ZNF799	90576	broad.mit.edu	37	19	12491639	12491639	+	Missense_Mutation	SNP	A	G	G	rs59301182	by1000genomes	2011-2317:2012-357-T	g.chr19:12491639A>G	uc002mts.3	-	4	903	c.437T>C	c.(436-438)CTG>CCG	p.L146P			
ZNF799	90576	broad.mit.edu	37	19	12491654	12491654	+	Missense_Mutation	SNP	C	T	T	rs57371898	by1000genomes	2011-2317:2012-357-T	g.chr19:12491654C>T	uc002mts.3	-	4	888	c.422G>A	c.(421-423)CGT>CAT	p.R141H			
TTN	7273	broad.mit.edu	37	2	179582162	179582162	+	Intron	SNP	C	T	T	rs62178977	by1000genomes	2011-2317:2012-357-T	g.chr2:179582162C>T	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133378	NP_596869
TRPM2	7226	broad.mit.edu	37	21	45848592	45848592	+	Intron	SNP	G	C	C			2011-2317:2012-357-T	g.chr21:45848592G>C	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron|TRPM2_uc011aff.1_Intron	NM_003307	NP_003298
MICAL3	57553	broad.mit.edu	37	22	18359824	18359824	+	Intron	SNP	G	A	A			2011-2317:2012-357-T	g.chr22:18359824G>A	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
MUC4	4585	broad.mit.edu	37	3	195502369	195502369	+	Intron	SNP	A	G	G	rs141572613	by1000genomes	2011-2317:2012-357-T	g.chr3:195502369A>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FAM53A	152877	broad.mit.edu	37	4	1672738	1672738	+	Intron	SNP	A	C	C			2011-2317:2012-357-T	g.chr4:1672738A>C	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
SORCS2	57537	broad.mit.edu	37	4	7455225	7455225	+	Intron	SNP	A	G	G			2011-2317:2012-357-T	g.chr4:7455225A>G	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
SLC10A7	84068	broad.mit.edu	37	4	147207476	147207476	+	Intron	SNP	T	C	C	rs111738244		2011-2317:2012-357-T	g.chr4:147207476T>C	uc010ioz.2	-						SLC10A7_uc003ikr.2_Intron|SLC10A7_uc010ipa.2_Intron|SLC10A7_uc003iks.2_Intron	NM_001029998	NP_001025169
FSTL5	56884	broad.mit.edu	37	4	163085523	163085523	+	5'Flank	SNP	G	C	C	rs12642329	by1000genomes	2011-2317:2012-357-T	g.chr4:163085523G>C	uc003iqh.2	-						FSTL5_uc003iqi.2_5'Flank|FSTL5_uc010iqv.2_5'Flank	NM_020116	NP_064501
RANBP17	64901	broad.mit.edu	37	5	170288551	170288551	+	5'Flank	SNP	C	G	G	rs3806931	by1000genomes	2011-2317:2012-357-T	g.chr5:170288551C>G	uc003mba.2	+						RANBP17_uc003max.1_5'Flank|RANBP17_uc003may.1_5'Flank|RANBP17_uc003maz.1_5'Flank|RANBP17_uc010jjr.1_5'Flank|RANBP17_uc003maw.2_5'Flank|RANBP17_uc011dew.1_5'Flank	NM_022897	NP_075048
UNC5A	90249	broad.mit.edu	37	5	176299785	176299786	+	Intron	DNP	CT	TC	TC			2011-2317:2012-357-T	g.chr5:176299785_176299786CT>TC	uc003mey.2	+						UNC5A_uc010jkg.1_Intron	NM_133369	NP_588610
UNC5A	90249	broad.mit.edu	37	5	176299888	176299889	+	Intron	DNP	CT	TC	TC			2011-2317:2012-357-T	g.chr5:176299888_176299889CT>TC	uc003mey.2	+						UNC5A_uc010jkg.1_Intron	NM_133369	NP_588610
RUFY1	80230	broad.mit.edu	37	5	178986261	178986261	+	Intron	SNP	C	G	G	rs6601050	by1000genomes	2011-2317:2012-357-T	g.chr5:178986261C>G	uc003mka.1	+						RUFY1_uc003mkb.1_5'Flank|RUFY1_uc003mkc.1_5'Flank	NM_025158	NP_079434
DST	667	broad.mit.edu	37	6	56476262	56476262	+	Intron	SNP	T	C	C	rs7747060	by1000genomes	2011-2317:2012-357-T	g.chr6:56476262T>C	uc003pdf.2	-						DST_uc003pcz.3_Intron|DST_uc011dxj.1_Intron|DST_uc011dxk.1_Intron|DST_uc003pcy.3_Intron|DST_uc003pdb.2_Intron	NM_001144769	NP_001138241
VPS41	27072	broad.mit.edu	37	7	38948813	38948813	+	5'Flank	SNP	G	T	T			2011-2317:2012-357-T	g.chr7:38948813G>T	uc003tgy.2	-						VPS41_uc003tgz.2_5'Flank|VPS41_uc010kxn.2_5'Flank	NM_014396	NP_055211
EGFR	1956	broad.mit.edu	37	7	55259450	55259450	+	Silent	SNP	C	T	T	rs17290559	byFrequency;by1000genomes	2011-2317:2012-357-T	g.chr7:55259450C>T	uc003tqk.2	+	21	2754	c.2508C>T	c.(2506-2508)CGC>CGT	p.R836R	EGFR_uc010kzg.1_Silent_p.R791R|EGFR_uc011kco.1_Silent_p.R783R|uc003tqo.2_5'Flank	NM_005228	NP_005219
PCLO	27445	broad.mit.edu	37	7	82545989	82545989	+	Silent	SNP	A	G	G			2011-2317:2012-357-T	g.chr7:82545989A>G	uc003uhx.2	-	7	11602	c.11313T>C	c.(11311-11313)GAT>GAC	p.D3771D	PCLO_uc003uhv.2_Silent_p.D3771D|PCLO_uc010lec.2_Silent_p.D736D	NM_033026	NP_149015
RELN	5649	broad.mit.edu	37	7	103237030	103237030	+	Missense_Mutation	SNP	C	T	T			2011-2317:2012-357-T	g.chr7:103237030C>T	uc003vca.2	-	25	3572	c.3412G>A	c.(3412-3414)GGA>AGA	p.G1138R	RELN_uc010liz.2_Missense_Mutation_p.G1138R	NM_005045	NP_005036
CSMD3	114788	broad.mit.edu	37	8	114185845	114185845	+	Intron	SNP	C	G	G			2011-2317:2012-357-T	g.chr8:114185845C>G	uc003ynu.2	-						CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc010mcx.1_Intron	NM_198123	NP_937756
ZNF16	7564	broad.mit.edu	37	8	146172583	146172583	+	Intron	SNP	G	A	A	rs71522405	by1000genomes	2011-2317:2012-357-T	g.chr8:146172583G>A	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
TTF1	7270	broad.mit.edu	37	9	135254044	135254044	+	Intron	SNP	A	C	C			2011-2317:2012-357-T	g.chr9:135254044A>C	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
PRDM16	63976	broad.mit.edu	37	1	3082438	3082438	+	Intron	SNP	A	T	T	rs78749930	by1000genomes	2011-2318:2012-356-T	g.chr1:3082438A>T	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3082448	3082448	+	Intron	SNP	C	G	G	rs76747589	by1000genomes	2011-2318:2012-356-T	g.chr1:3082448C>G	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
NBPF1	55672	broad.mit.edu	37	1	16914332	16914332	+	Intron	SNP	A	C	C			2011-2318:2012-356-T	g.chr1:16914332A>C	uc009vos.1	-						NBPF1_uc009vot.1_5'Flank|NBPF1_uc001ayz.1_5'Flank|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
C1orf173	127254	broad.mit.edu	37	1	75037596	75037596	+	Silent	SNP	G	A	A			2011-2318:2012-356-T	g.chr1:75037596G>A	uc001dgg.2	-	14	4017	c.3798C>T	c.(3796-3798)GTC>GTT	p.V1266V		NM_001002912	NP_001002912
C1orf173	127254	broad.mit.edu	37	1	75038393	75038393	+	Missense_Mutation	SNP	C	G	G			2011-2318:2012-356-T	g.chr1:75038393C>G	uc001dgg.2	-	14	3220	c.3001G>C	c.(3001-3003)GCA>CCA	p.A1001P		NM_001002912	NP_001002912
C1orf173	127254	broad.mit.edu	37	1	75107117	75107117	+	Missense_Mutation	SNP	T	A	A			2011-2318:2012-356-T	g.chr1:75107117T>A	uc001dgg.2	-	5	561	c.342A>T	c.(340-342)GAA>GAT	p.E114D		NM_001002912	NP_001002912
ABCA4	24	broad.mit.edu	37	1	94526098	94526098	+	Missense_Mutation	SNP	T	C	C			2011-2318:2012-356-T	g.chr1:94526098T>C	uc001dqh.2	-	14	2259	c.2155A>G	c.(2155-2157)ATC>GTC	p.I719V	ABCA4_uc010otn.1_Missense_Mutation_p.I719V	NM_000350	NP_000341
SPTA1	6708	broad.mit.edu	37	1	158609846	158609846	+	Intron	SNP	C	A	A			2011-2318:2012-356-T	g.chr1:158609846C>A	uc001fst.1	-							NM_003126	NP_003117
SPTA1	6708	broad.mit.edu	37	1	158641206	158641206	+	Missense_Mutation	SNP	C	T	T			2011-2318:2012-356-T	g.chr1:158641206C>T	uc001fst.1	-	12	1725	c.1526G>A	c.(1525-1527)GGC>GAC	p.G509D		NM_003126	NP_003117
SPTA1	6708	broad.mit.edu	37	1	158656739	158656739	+	5'Flank	SNP	A	G	G			2011-2318:2012-356-T	g.chr1:158656739A>G	uc001fst.1	-							NM_003126	NP_003117
PIK3C2B	5287	broad.mit.edu	37	1	204418378	204418378	+	Missense_Mutation	SNP	G	C	C			2011-2318:2012-356-T	g.chr1:204418378G>C	uc001haw.2	-	15	2760	c.2281C>G	c.(2281-2283)CAG>GAG	p.Q761E	PIK3C2B_uc010pqv.1_Missense_Mutation_p.Q761E	NM_002646	NP_002637
USH2A	7399	broad.mit.edu	37	1	216073272	216073272	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr1:216073272C>T	uc001hku.1	-							NM_206933	NP_996816
GPR123	84435	broad.mit.edu	37	10	134893278	134893278	+	Intron	SNP	G	A	A			2011-2318:2012-356-T	g.chr10:134893278G>A	uc001llw.2	+								
TMEM132D	121256	broad.mit.edu	37	12	129563151	129563151	+	Missense_Mutation	SNP	C	A	A			2011-2318:2012-356-T	g.chr12:129563151C>A	uc009zyl.1	-	8	2371	c.2043G>T	c.(2041-2043)CAG>CAT	p.Q681H	TMEM132D_uc001uia.2_Missense_Mutation_p.Q219H	NM_133448	NP_597705
CCNA1	8900	broad.mit.edu	37	13	37011805	37011805	+	Missense_Mutation	SNP	G	T	T			2011-2318:2012-356-T	g.chr13:37011805G>T	uc001uvr.3	+	3	687	c.337G>T	c.(337-339)GCC>TCC	p.A113S	CCNA1_uc010teo.1_Missense_Mutation_p.A69S|CCNA1_uc010abq.2_Missense_Mutation_p.A69S|CCNA1_uc010abp.2_Missense_Mutation_p.A69S|CCNA1_uc001uvs.3_Missense_Mutation_p.A112S|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905
GPC5	2262	broad.mit.edu	37	13	92051567	92051567	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr13:92051567C>T	uc010tif.1	+							NM_004466	NP_004457
TPP2	7174	broad.mit.edu	37	13	103286304	103286304	+	Missense_Mutation	SNP	G	A	A			2011-2318:2012-356-T	g.chr13:103286304G>A	uc001vpi.3	+	11	1352	c.1249G>A	c.(1249-1251)GAC>AAC	p.D417N		NM_003291	NP_003282
F7	2155	broad.mit.edu	37	13	113761619	113761619	+	Intron	SNP	G	A	A			2011-2318:2012-356-T	g.chr13:113761619G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
GRTP1	79774	broad.mit.edu	37	13	113984825	113984825	+	Intron	SNP	G	A	A	rs71446691	by1000genomes	2011-2318:2012-356-T	g.chr13:113984825G>A	uc001vtn.2	-						GRTP1_uc010tkb.1_Intron|GRTP1_uc010tkc.1_Intron	NM_024719	NP_078995
SYNE2	23224	broad.mit.edu	37	14	64600850	64600850	+	Missense_Mutation	SNP	A	G	G			2011-2318:2012-356-T	g.chr14:64600850A>G	uc001xgm.2	+	78	14808	c.14578A>G	c.(14578-14580)ACA>GCA	p.T4860A	SYNE2_uc001xgl.2_Missense_Mutation_p.T4860A|SYNE2_uc010apy.2_Missense_Mutation_p.T1245A|SYNE2_uc010apz.1_Missense_Mutation_p.T752A	NM_015180	NP_055995
NRXN3	9369	broad.mit.edu	37	14	79181420	79181420	+	Missense_Mutation	SNP	G	C	C			2011-2318:2012-356-T	g.chr14:79181420G>C	uc001xun.2	+	5	1354	c.863G>C	c.(862-864)GGC>GCC	p.G288A	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.G422A	NM_004796	NP_004787
FOXN3	1112	broad.mit.edu	37	14	89827138	89827138	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr14:89827138C>T	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
RAB11FIP3	9727	broad.mit.edu	37	16	554251	554251	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr16:554251C>T	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
LMF1	64788	broad.mit.edu	37	16	999993	999993	+	Intron	SNP	A	C	C			2011-2318:2012-356-T	g.chr16:999993A>C	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000013	1000013	+	Intron	SNP	C	A	A			2011-2318:2012-356-T	g.chr16:1000013C>A	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
RPL3L	6123	broad.mit.edu	37	16	1999930	1999930	+	Intron	SNP	A	G	G			2011-2318:2012-356-T	g.chr16:1999930A>G	uc002cnh.2	-							NM_005061	NP_005052
DNAH3	55567	broad.mit.edu	37	16	21069512	21069512	+	Silent	SNP	A	T	T			2011-2318:2012-356-T	g.chr16:21069512A>T	uc010vbe.1	-	27	3819	c.3819T>A	c.(3817-3819)CCT>CCA	p.P1273P		NM_017539	NP_060009
HYDIN	54768	broad.mit.edu	37	16	71127835	71127835	+	Missense_Mutation	SNP	C	A	A			2011-2318:2012-356-T	g.chr16:71127835C>A	uc002ezr.2	-	11	1459	c.1331G>T	c.(1330-1332)CGA>CTA	p.R444L	HYDIN_uc010cfz.1_Missense_Mutation_p.R189L|HYDIN_uc002ezv.2_Missense_Mutation_p.R444L|HYDIN_uc010vmc.1_Missense_Mutation_p.R461L|HYDIN_uc010vmd.1_Missense_Mutation_p.R471L|HYDIN_uc002ezw.3_Missense_Mutation_p.R461L	NM_032821	NP_116210
CBFA2T3	863	broad.mit.edu	37	16	89022128	89022128	+	Intron	SNP	C	G	G			2011-2318:2012-356-T	g.chr16:89022128C>G	uc002fmm.1	-						CBFA2T3_uc002fmn.1_Intron	NM_005187	NP_005178
CBFA2T3	863	broad.mit.edu	37	16	89022152	89022152	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr16:89022152C>T	uc002fmm.1	-						CBFA2T3_uc002fmn.1_Intron	NM_005187	NP_005178
P2RX5	5026	broad.mit.edu	37	17	3583482	3583482	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr17:3583482C>T	uc002fwi.2	-						P2RX5_uc002fwd.2_Intron|P2RX5_uc002fwh.1_Intron|P2RX5_uc010vrx.1_Intron|P2RX5_uc002fwj.2_Intron|P2RX5_uc002fwk.2_Intron|P2RX5_uc002fwl.2_Intron	NM_002561	NP_002552
STAT3	6774	broad.mit.edu	37	17	40490832	40490832	+	Splice_Site	SNP	T	C	C			2011-2318:2012-356-T	g.chr17:40490832T>C	uc002hzl.1	-	6	709	c.469_splice	c.e6-1	p.D157_splice	STAT3_uc002hzk.1_Splice_Site_p.D157_splice|STAT3_uc002hzm.1_Splice_Site_p.D157_splice|STAT3_uc010wgh.1_Splice_Site_p.D59_splice|STAT3_uc002hzn.1_Splice_Site_p.D157_splice	NM_139276	NP_644805
PRKCA	5578	broad.mit.edu	37	17	64795440	64795440	+	Intron	SNP	G	A	A			2011-2318:2012-356-T	g.chr17:64795440G>A	uc002jfp.1	+							NM_002737	NP_002728
CDH2	1000	broad.mit.edu	37	18	25736801	25736801	+	Intron	SNP	T	C	C	rs17446952		2011-2318:2012-356-T	g.chr18:25736801T>C	uc002kwg.2	-							NM_001792	NP_001783
MLLT1	4298	broad.mit.edu	37	19	6238789	6238789	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr19:6238789C>T	uc002mek.2	-							NM_005934	NP_005925
NOTCH3	4854	broad.mit.edu	37	19	15291470	15291470	+	Intron	SNP	C	A	A			2011-2318:2012-356-T	g.chr19:15291470C>A	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
MEF2B	100271849	broad.mit.edu	37	19	19260128	19260128	+	Silent	SNP	G	A	A			2011-2318:2012-356-T	g.chr19:19260128G>A	uc002nlm.2	-	3	279	c.165C>T	c.(163-165)TTC>TTT	p.F55F	MEF2B_uc002nln.2_Silent_p.F102F|MEF2B_uc002nll.2_Silent_p.F55F|LOC729991-MEF2B_uc010xqo.1_Silent_p.F55F|LOC729991-MEF2B_uc010xqp.1_Silent_p.F55F|LOC729991-MEF2B_uc002nlo.2_Silent_p.F55F|LOC729991-MEF2B_uc002nlp.2_Silent_p.F55F|MEF2B_uc002nlk.2_Silent_p.F55F	NM_001145785	NP_001139257
NTN5	126147	broad.mit.edu	37	19	49172584	49172584	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr19:49172584C>T	uc002pkb.2	-						SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Intron	NM_145807	NP_665806
ETFB	2109	broad.mit.edu	37	19	51849188	51849188	+	Intron	SNP	C	G	G			2011-2318:2012-356-T	g.chr19:51849188C>G	uc002pwh.2	-						ETFB_uc002pwg.2_Intron	NM_001985	NP_001976
ETFB	2109	broad.mit.edu	37	19	51849216	51849216	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr19:51849216C>T	uc002pwh.2	-						ETFB_uc002pwg.2_Intron	NM_001985	NP_001976
NLRP4	147945	broad.mit.edu	37	19	56361904	56361904	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr19:56361904C>T	uc002qmd.3	+							NM_134444	NP_604393
MYT1L	23040	broad.mit.edu	37	2	2008059	2008059	+	Intron	SNP	A	C	C			2011-2318:2012-356-T	g.chr2:2008059A>C	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron|MYT1L_uc002qxf.1_Intron	NM_015025	NP_055840
MYT1L	23040	broad.mit.edu	37	2	2193545	2193545	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr2:2193545C>T	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
LTBP1	4052	broad.mit.edu	37	2	33590536	33590536	+	Silent	SNP	C	A	A			2011-2318:2012-356-T	g.chr2:33590536C>A	uc002ros.2	+	31	4680	c.4680C>A	c.(4678-4680)GGC>GGA	p.G1560G	LTBP1_uc002rot.2_Silent_p.G1234G|LTBP1_uc002rou.2_Silent_p.G1233G|LTBP1_uc002rov.2_Silent_p.G1180G|LTBP1_uc010ymz.1_Silent_p.G1191G|LTBP1_uc010yna.1_Silent_p.G1138G|LTBP1_uc010ynb.1_Silent_p.G457G	NM_206943	NP_996826
RMND5A	64795	broad.mit.edu	37	2	87641717	87641717	+	Intron	SNP	C	A	A			2011-2318:2012-356-T	g.chr2:87641717C>A	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179537395	179537395	+	Missense_Mutation	SNP	G	C	C			2011-2318:2012-356-T	g.chr2:179537395G>C	uc010zfg.1	-	148	31143	c.30919C>G	c.(30919-30921)CCT>GCT	p.P10307A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6968A|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'Flank|TTN_uc002una.1_RNA|TTN_uc010frf.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179575454	179575455	+	Missense_Mutation	DNP	AG	TA	TA			2011-2318:2012-356-T	g.chr2:179575454_179575455AG>TA	uc010zfg.1	-	95	24861_24862	c.24637_24638CT>TA	c.(24637-24639)CTC>TAC	p.L8213Y	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L4874Y	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179611600	179611600	+	Missense_Mutation	SNP	G	T	T			2011-2318:2012-356-T	g.chr2:179611600G>T	uc002unb.2	-	46	15751	c.15527C>A	c.(15526-15528)CCA>CAA	p.P5176Q	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870
TTN	7273	broad.mit.edu	37	2	179642400	179642400	+	Intron	SNP	T	C	C			2011-2318:2012-356-T	g.chr2:179642400T>C	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002unb.2_Intron|uc002unc.1_RNA	NM_133378	NP_596869
MAP2	4133	broad.mit.edu	37	2	210443889	210443889	+	5'Flank	SNP	T	C	C			2011-2318:2012-356-T	g.chr2:210443889T>C	uc002vde.1	+						MAP2_uc002vdc.1_Intron|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_5'Flank|MAP2_uc002vdg.1_5'Flank	NM_002374	NP_002365
MAP2	4133	broad.mit.edu	37	2	210443892	210443893	+	5'Flank	DNP	CC	AA	AA			2011-2318:2012-356-T	g.chr2:210443892_210443893CC>AA	uc002vde.1	+						MAP2_uc002vdc.1_Intron|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_5'Flank|MAP2_uc002vdg.1_5'Flank	NM_002374	NP_002365
MAP2	4133	broad.mit.edu	37	2	210543228	210543228	+	Intron	SNP	G	C	C			2011-2318:2012-356-T	g.chr2:210543228G>C	uc002vde.1	+						MAP2_uc002vdc.1_Intron|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Intron	NM_002374	NP_002365
ERBB4	2066	broad.mit.edu	37	2	212522545	212522545	+	Missense_Mutation	SNP	C	A	A			2011-2318:2012-356-T	g.chr2:212522545C>A	uc002veg.1	-	16	1978	c.1880G>T	c.(1879-1881)GGT>GTT	p.G627V	ERBB4_uc002veh.1_Missense_Mutation_p.G627V|ERBB4_uc010zji.1_Intron|ERBB4_uc010zjj.1_Intron|ERBB4_uc010fut.1_Missense_Mutation_p.G627V	NM_005235	NP_005226
ABCA12	26154	broad.mit.edu	37	2	215914412	215914412	+	Missense_Mutation	SNP	A	G	G			2011-2318:2012-356-T	g.chr2:215914412A>G	uc002vew.2	-	6	851	c.631T>C	c.(631-633)TGC>CGC	p.C211R	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099
CUL3	8452	broad.mit.edu	37	2	225428059	225428059	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr2:225428059C>T	uc002vny.2	-						CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Intron	NM_003590	NP_003581
DSCAM	1826	broad.mit.edu	37	21	41414451	41414451	+	Missense_Mutation	SNP	C	T	T			2011-2318:2012-356-T	g.chr21:41414451C>T	uc002yyq.1	-	32	5985	c.5533G>A	c.(5533-5535)GAG>AAG	p.E1845K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380
TGFBR2	7048	broad.mit.edu	37	3	30713818	30713818	+	Missense_Mutation	SNP	G	C	C			2011-2318:2012-356-T	g.chr3:30713818G>C	uc003ceo.2	+	4	1525	c.1143G>C	c.(1141-1143)AAG>AAC	p.K381N	TGFBR2_uc003cen.2_Missense_Mutation_p.K406N	NM_003242	NP_003233
DPPA4	55211	broad.mit.edu	37	3	109050700	109050700	+	Intron	SNP	C	A	A			2011-2318:2012-356-T	g.chr3:109050700C>A	uc003dxq.3	-						DPPA4_uc011bho.1_Intron|DPPA4_uc011bhp.1_Intron	NM_018189	NP_060659
CHCHD6	84303	broad.mit.edu	37	3	126582025	126582025	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr3:126582025C>T	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
EPHB1	2047	broad.mit.edu	37	3	134911380	134911380	+	Intron	SNP	G	T	T			2011-2318:2012-356-T	g.chr3:134911380G>T	uc003eqt.2	+						EPHB1_uc003equ.2_Intron	NM_004441	NP_004432
GAK	2580	broad.mit.edu	37	4	907941	907941	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr4:907941C>T	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_Intron|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246
KIT	3815	broad.mit.edu	37	4	55598125	55598125	+	Silent	SNP	C	T	T			2011-2318:2012-356-T	g.chr4:55598125C>T	uc010igr.2	+	16	2409	c.2322C>T	c.(2320-2322)TAC>TAT	p.Y774Y	KIT_uc010igs.2_Silent_p.Y770Y	NM_000222	NP_000213
KDR	3791	broad.mit.edu	37	4	55946257	55946257	+	Missense_Mutation	SNP	C	T	T			2011-2318:2012-356-T	g.chr4:55946257C>T	uc003has.2	-	30	4224	c.3922G>A	c.(3922-3924)GGA>AGA	p.G1308R	KDR_uc003hat.1_Missense_Mutation_p.G1308R	NM_002253	NP_002244
INPP4B	8821	broad.mit.edu	37	4	143350251	143350251	+	Intron	SNP	G	T	T			2011-2318:2012-356-T	g.chr4:143350251G>T	uc003iix.3	-						INPP4B_uc003iiw.3_Intron|INPP4B_uc011chm.1_Intron|INPP4B_uc011cho.1_Intron|INPP4B_uc003iiz.2_Intron	NM_003866	NP_003857
DNAH5	1767	broad.mit.edu	37	5	13700663	13700663	+	Intron	SNP	T	C	C			2011-2318:2012-356-T	g.chr5:13700663T>C	uc003jfd.2	-						DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360
DNAH5	1767	broad.mit.edu	37	5	13727636	13727636	+	Missense_Mutation	SNP	G	A	A			2011-2318:2012-356-T	g.chr5:13727636G>A	uc003jfd.2	-	70	12055	c.12013C>T	c.(12013-12015)CCT>TCT	p.P4005S	DNAH5_uc003jfc.2_Missense_Mutation_p.P173S	NM_001369	NP_001360
IL6ST	3572	broad.mit.edu	37	5	55278679	55278679	+	Intron	SNP	G	C	C			2011-2318:2012-356-T	g.chr5:55278679G>C	uc003jqq.2	-						IL6ST_uc011cqk.1_5'Flank|IL6ST_uc003jqr.2_Intron	NM_002184	NP_002175
PCDHB4	56131	broad.mit.edu	37	5	140504018	140504018	+	3'UTR	SNP	A	C	C			2011-2318:2012-356-T	g.chr5:140504018A>C	uc003lip.1	+	1						NM_018938	NP_061761
PCDHB7	56129	broad.mit.edu	37	5	140553763	140553763	+	Silent	SNP	C	T	T			2011-2318:2012-356-T	g.chr5:140553763C>T	uc003lit.2	+	1	1521	c.1347C>T	c.(1345-1347)CCC>CCT	p.P449P		NM_018940	NP_061763
PCDHB11	56125	broad.mit.edu	37	5	140580296	140580296	+	Missense_Mutation	SNP	A	G	G			2011-2318:2012-356-T	g.chr5:140580296A>G	uc003liy.2	+	1	949	c.949A>G	c.(949-951)ATA>GTA	p.I317V	PCDHB11_uc011daj.1_5'UTR	NM_018931	NP_061754
ADAMTS2	9509	broad.mit.edu	37	5	178562151	178562151	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr5:178562151C>T	uc003mjw.2	-							NM_014244	NP_055059
RUFY1	80230	broad.mit.edu	37	5	178996454	178996454	+	Intron	SNP	A	T	T			2011-2318:2012-356-T	g.chr5:178996454A>T	uc003mka.1	+						RUFY1_uc003mkb.1_Intron|RUFY1_uc003mkc.1_Intron	NM_025158	NP_079434
RIPK1	8737	broad.mit.edu	37	6	3092822	3092822	+	Intron	SNP	A	G	G			2011-2318:2012-356-T	g.chr6:3092822A>G	uc010jni.2	+						RIPK1_uc003muv.3_Intron|RIPK1_uc003muw.3_Intron|RIPK1_uc011dhs.1_Intron|RIPK1_uc003mux.2_Intron	NM_003804	NP_003795
HLA-G	3135	broad.mit.edu	37	6	29896647	29896647	+	Intron	SNP	A	G	G			2011-2318:2012-356-T	g.chr6:29896647A>G	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|uc003noi.2_Intron	NM_002127	NP_002118
PHIP	55023	broad.mit.edu	37	6	79727254	79727254	+	Silent	SNP	A	C	C			2011-2318:2012-356-T	g.chr6:79727254A>C	uc003pir.2	-	11	1267	c.1041T>G	c.(1039-1041)GTT>GTG	p.V347V	PHIP_uc011dyp.1_Silent_p.V347V	NM_017934	NP_060404
ROS1	6098	broad.mit.edu	37	6	117711053	117711053	+	Intron	SNP	G	A	A			2011-2318:2012-356-T	g.chr6:117711053G>A	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117730858	117730858	+	Intron	SNP	T	A	A			2011-2318:2012-356-T	g.chr6:117730858T>A	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
SYNE1	23345	broad.mit.edu	37	6	152570205	152570205	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr6:152570205C>T	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152622916	152622916	+	Intron	SNP	C	A	A			2011-2318:2012-356-T	g.chr6:152622916C>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kiy.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152673362	152673362	+	Missense_Mutation	SNP	T	C	C			2011-2318:2012-356-T	g.chr6:152673362T>C	uc010kiw.2	-	70	11982	c.11380A>G	c.(11380-11382)ATG>GTG	p.M3794V	SYNE1_uc003qot.3_Missense_Mutation_p.M3779V|SYNE1_uc003qou.3_Missense_Mutation_p.M3794V|SYNE1_uc010kja.1_Missense_Mutation_p.M499V	NM_182961	NP_892006
TMEM181	57583	broad.mit.edu	37	6	158987584	158987584	+	Intron	SNP	G	A	A	rs111507704		2011-2318:2012-356-T	g.chr6:158987584G>A	uc003qrm.3	+						TMEM181_uc010kjr.1_Intron	NM_020823	NP_065874
THSD7A	221981	broad.mit.edu	37	7	11581241	11581241	+	Silent	SNP	G	T	T			2011-2318:2012-356-T	g.chr7:11581241G>T	uc003ssf.3	-	6	1879	c.1627C>A	c.(1627-1629)CGG>AGG	p.R543R		NM_015204	NP_056019
PKD1L1	168507	broad.mit.edu	37	7	47886675	47886675	+	Intron	SNP	A	T	T			2011-2318:2012-356-T	g.chr7:47886675A>T	uc003tny.1	-							NM_138295	NP_612152
PCLO	27445	broad.mit.edu	37	7	82764662	82764662	+	Missense_Mutation	SNP	G	T	T			2011-2318:2012-356-T	g.chr7:82764662G>T	uc003uhx.2	-	3	2493	c.2204C>A	c.(2203-2205)CCC>CAC	p.P735H	PCLO_uc003uhv.2_Missense_Mutation_p.P735H	NM_033026	NP_149015
PCLO	27445	broad.mit.edu	37	7	82785416	82785416	+	Missense_Mutation	SNP	C	G	G			2011-2318:2012-356-T	g.chr7:82785416C>G	uc003uhx.2	-	2	830	c.541G>C	c.(541-543)GAC>CAC	p.D181H	PCLO_uc003uhv.2_Missense_Mutation_p.D181H	NM_033026	NP_149015
PIK3CG	5294	broad.mit.edu	37	7	106509435	106509435	+	Missense_Mutation	SNP	C	G	G	rs138344795	byFrequency	2011-2318:2012-356-T	g.chr7:106509435C>G	uc003vdv.3	+	2	1514	c.1429C>G	c.(1429-1431)CGT>GGT	p.R477G	PIK3CG_uc003vdu.2_Missense_Mutation_p.R477G|PIK3CG_uc003vdw.2_Missense_Mutation_p.R477G	NM_002649	NP_002640
CNTNAP2	26047	broad.mit.edu	37	7	146805442	146805442	+	Nonsense_Mutation	SNP	G	T	T			2011-2318:2012-356-T	g.chr7:146805442G>T	uc003weu.1	+	5	1270	c.754G>T	c.(754-756)GGA>TGA	p.G252*		NM_014141	NP_054860
CNTNAP2	26047	broad.mit.edu	37	7	147336196	147336196	+	Splice_Site	SNP	A	T	T			2011-2318:2012-356-T	g.chr7:147336196A>T	uc003weu.1	+	13	2414	c.1898_splice	c.e13-2	p.E633_splice		NM_014141	NP_054860
DPP6	1804	broad.mit.edu	37	7	154570546	154570546	+	Intron	SNP	A	G	G			2011-2318:2012-356-T	g.chr7:154570546A>G	uc003wlk.2	+						DPP6_uc003wli.2_Intron|DPP6_uc003wlm.2_Intron|DPP6_uc011kvq.1_Intron	NM_130797	NP_570629
PTPRN2	5799	broad.mit.edu	37	7	157852134	157852134	+	Intron	SNP	T	C	C			2011-2318:2012-356-T	g.chr7:157852134T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157940970	157940970	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr7:157940970C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157944097	157944097	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr7:157944097C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158200270	158200270	+	Intron	SNP	C	G	G	rs28759227	by1000genomes	2011-2318:2012-356-T	g.chr7:158200270C>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ADAM18	8749	broad.mit.edu	37	8	39525591	39525591	+	Silent	SNP	C	A	A			2011-2318:2012-356-T	g.chr8:39525591C>A	uc003xni.2	+	14	1401	c.1401C>A	c.(1399-1401)ACC>ACA	p.T467T	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.T443T	NM_014237	NP_055052
PKHD1L1	93035	broad.mit.edu	37	8	110534460	110534460	+	Missense_Mutation	SNP	G	T	T			2011-2318:2012-356-T	g.chr8:110534460G>T	uc003yne.2	+	74	12181	c.12077G>T	c.(12076-12078)GGA>GTA	p.G4026V		NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113518958	113518958	+	Silent	SNP	G	T	T	rs139092367	byFrequency;by1000genomes	2011-2318:2012-356-T	g.chr8:113518958G>T	uc003ynu.2	-	29	5016	c.4857C>A	c.(4855-4857)ACC>ACA	p.T1619T	CSMD3_uc003yns.2_Silent_p.T891T|CSMD3_uc003ynt.2_Silent_p.T1579T|CSMD3_uc011lhx.1_Silent_p.T1515T	NM_198123	NP_937756
COL22A1	169044	broad.mit.edu	37	8	139691909	139691909	+	Missense_Mutation	SNP	C	G	G			2011-2318:2012-356-T	g.chr8:139691909C>G	uc003yvd.2	-	40	3470	c.3023G>C	c.(3022-3024)GGA>GCA	p.G1008A	COL22A1_uc011ljo.1_Intron	NM_152888	NP_690848
TOP1MT	116447	broad.mit.edu	37	8	144405543	144405543	+	Intron	SNP	C	T	T	rs140726687	by1000genomes	2011-2318:2012-356-T	g.chr8:144405543C>T	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
ZNF16	7564	broad.mit.edu	37	8	146172189	146172189	+	Intron	SNP	C	T	T			2011-2318:2012-356-T	g.chr8:146172189C>T	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
MELK	9833	broad.mit.edu	37	9	36643017	36643017	+	Silent	SNP	C	T	T			2011-2318:2012-356-T	g.chr9:36643017C>T	uc003zzn.2	+	11	996	c.858C>T	c.(856-858)TGC>TGT	p.C286C	MELK_uc011lpm.1_Silent_p.C155C|MELK_uc011lpn.1_Silent_p.C286C|MELK_uc011lpo.1_Silent_p.C92C|MELK_uc010mll.2_Silent_p.C254C|MELK_uc011lpp.1_Silent_p.C238C|MELK_uc010mlm.2_Silent_p.C215C|MELK_uc011lpq.1_Silent_p.C92C|MELK_uc011lpr.1_Silent_p.C215C|MELK_uc011lps.1_Silent_p.C206C	NM_014791	NP_055606
NOTCH1	4851	broad.mit.edu	37	9	139393274	139393274	+	Intron	SNP	C	A	A	rs142307776	by1000genomes	2011-2318:2012-356-T	g.chr9:139393274C>A	uc004chz.2	-							NM_017617	NP_060087
KIAA2022	340533	broad.mit.edu	37	X	73963513	73963513	+	Missense_Mutation	SNP	G	T	T			2011-2318:2012-356-T	g.chrX:73963513G>T	uc004eby.2	-	3	1496	c.879C>A	c.(877-879)AAC>AAA	p.N293K		NM_001008537	NP_001008537
RGAG1	57529	broad.mit.edu	37	X	109698605	109698605	+	3'UTR	SNP	G	C	C			2011-2318:2012-356-T	g.chrX:109698605G>C	uc004eor.1	+	4						NM_020769	NP_065820
PRKCZ	5590	broad.mit.edu	37	1	2055826	2055826	+	Intron	SNP	G	A	A	rs145155163	by1000genomes	2011-2319:2012-355-T	g.chr1:2055826G>A	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron	NM_002744	NP_002735
OPRL1	4987	broad.mit.edu	37	20	62720158	62720158	+	Intron	SNP	T	C	C	rs62218111		2011-2319:2012-355-T	g.chr20:62720158T>C	uc002yic.2	+						OPRL1_uc002yid.2_Intron	NM_182647	NP_872588
MAD1L1	8379	broad.mit.edu	37	7	1910768	1910768	+	Intron	SNP	C	A	A	rs75450597	by1000genomes	2011-2319:2012-355-T	g.chr7:1910768C>A	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc003sld.1_Intron	NM_001013836	NP_001013858
NOTCH2	4853	broad.mit.edu	37	1	120463044	120463044	+	Intron	SNP	C	T	T	rs41306195	byFrequency;by1000genomes	2011-2320:2012-354-T	g.chr1:120463044C>T	uc001eik.2	-							NM_024408	NP_077719
SPTA1	6708	broad.mit.edu	37	1	158656758	158656758	+	5'Flank	SNP	A	G	G	rs443000	by1000genomes	2011-2320:2012-354-T	g.chr1:158656758A>G	uc001fst.1	-							NM_003126	NP_003117
CCDC6	8030	broad.mit.edu	37	10	61642188	61642188	+	Intron	SNP	G	C	C			2011-2320:2012-354-T	g.chr10:61642188G>C	uc001jks.3	-							NM_005436	NP_005427
MCF2L	23263	broad.mit.edu	37	13	113659706	113659706	+	Intron	SNP	G	A	A	rs12019546	by1000genomes	2011-2320:2012-354-T	g.chr13:113659706G>A	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron	NM_001112732	NP_001106203
RPTOR	57521	broad.mit.edu	37	17	78718138	78718138	+	Intron	SNP	C	T	T	rs146122736		2011-2320:2012-354-T	g.chr17:78718138C>T	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
STAT1	6772	broad.mit.edu	37	2	191879243	191879243	+	5'Flank	SNP	T	C	C	rs13027915	by1000genomes	2011-2320:2012-354-T	g.chr2:191879243T>C	uc002usj.2	-						STAT1_uc010fse.1_5'Flank|STAT1_uc002usk.2_5'Flank|STAT1_uc002usl.2_5'Flank|STAT1_uc010fsf.1_5'Flank	NM_007315	NP_009330
STAT1	6772	broad.mit.edu	37	2	191879251	191879251	+	5'Flank	SNP	T	C	C	rs13027923	by1000genomes	2011-2320:2012-354-T	g.chr2:191879251T>C	uc002usj.2	-						STAT1_uc010fse.1_5'Flank|STAT1_uc002usk.2_5'Flank|STAT1_uc002usl.2_5'Flank|STAT1_uc010fsf.1_5'Flank	NM_007315	NP_009330
CDH4	1002	broad.mit.edu	37	20	59981647	59981647	+	Intron	SNP	C	T	T	rs6089501	by1000genomes	2011-2320:2012-354-T	g.chr20:59981647C>T	uc002ybn.1	+							NM_001794	NP_001785
SI	6476	broad.mit.edu	37	3	164772957	164772957	+	Intron	SNP	C	T	T	rs9290256	by1000genomes	2011-2320:2012-354-T	g.chr3:164772957C>T	uc003fei.2	-							NM_001041	NP_001032
SI	6476	broad.mit.edu	37	3	164781368	164781368	+	Intron	SNP	G	A	A	rs11718901	by1000genomes	2011-2320:2012-354-T	g.chr3:164781368G>A	uc003fei.2	-							NM_001041	NP_001032
LPP	4026	broad.mit.edu	37	3	188426256	188426256	+	Intron	SNP	A	G	G	rs9877192	by1000genomes	2011-2320:2012-354-T	g.chr3:188426256A>G	uc003frs.1	+						LPP_uc011bsg.1_Intron|LPP_uc011bsi.1_Intron|LPP_uc003frt.2_3'UTR|LPP_uc011bsj.1_Intron	NM_005578	NP_005569
C7orf50	84310	broad.mit.edu	37	7	1056401	1056401	+	Intron	SNP	A	G	G	rs114922888	by1000genomes	2011-2320:2012-354-T	g.chr7:1056401A>G	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
SLCO5A1	81796	broad.mit.edu	37	8	70744582	70744582	+	Silent	SNP	G	A	A	rs145247874		2011-2320:2012-354-T	g.chr8:70744582G>A	uc003xyl.2	-	2	1034	c.327C>T	c.(325-327)TCC>TCT	p.S109S	SLCO5A1_uc010lzb.2_Silent_p.S109S|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Silent_p.S109S|SLCO5A1_uc010lzc.2_Silent_p.S109S	NM_030958	NP_112220
RIMS2	9699	broad.mit.edu	37	8	104987771	104987771	+	Intron	SNP	G	A	A	rs72683111	by1000genomes	2011-2320:2012-354-T	g.chr8:104987771G>A	uc003yls.2	+						RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Intron|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron|RIMS2_uc003ylt.2_3'UTR	NM_014677	NP_055492
DPYS	1807	broad.mit.edu	37	8	105459793	105459793	+	Intron	SNP	C	A	A	rs7821992	by1000genomes	2011-2320:2012-354-T	g.chr8:105459793C>A	uc003yly.3	-							NM_001385	NP_001376
CSMD3	114788	broad.mit.edu	37	8	113585637	113585637	+	Intron	SNP	A	G	G	rs7014796	by1000genomes	2011-2320:2012-354-T	g.chr8:113585637A>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
ENPP2	5168	broad.mit.edu	37	8	120598395	120598395	+	Intron	SNP	G	A	A	rs72688223	byFrequency;by1000genomes	2011-2320:2012-354-T	g.chr8:120598395G>A	uc003yot.1	-						ENPP2_uc011lic.1_5'Flank|ENPP2_uc003yor.1_Intron|ENPP2_uc003yos.1_Intron|ENPP2_uc010mdd.1_Intron	NM_001040092	NP_001035181
PBX3	5090	broad.mit.edu	37	9	128677929	128677929	+	Intron	SNP	T	C	C	rs138144415	by1000genomes	2011-2320:2012-354-T	g.chr9:128677929T>C	uc004bqb.2	+						PBX3_uc004bqc.2_Intron|PBX3_uc004bqd.2_Intron|PBX3_uc011lzw.1_Intron|PBX3_uc011lzx.1_Intron|PBX3_uc004bqe.2_5'Flank	NM_006195	NP_006186
NUP214	8021	broad.mit.edu	37	9	134003900	134003900	+	Intron	SNP	A	G	G	rs967174	by1000genomes	2011-2320:2012-354-T	g.chr9:134003900A>G	uc004cag.2	+						NUP214_uc004cah.2_Intron|NUP214_uc004caf.1_Intron	NM_005085	NP_005076
NUP214	8021	broad.mit.edu	37	9	134015899	134015899	+	Intron	SNP	C	G	G	rs2281902	by1000genomes	2011-2320:2012-354-T	g.chr9:134015899C>G	uc004cag.2	+						NUP214_uc004cah.2_Intron|NUP214_uc004caf.1_Intron	NM_005085	NP_005076
ASMTL	8623	broad.mit.edu	37	X	1562309	1562309	+	Intron	SNP	T	A	A			2011-2320:2012-354-T	g.chrX:1562309T>A	uc004cpx.1	-						ASMTL_uc011mhe.1_Intron|ASMTL_uc004cpy.1_Intron|ASMTL_uc011mhf.1_Intron	NM_004192	NP_004183
LMF1	64788	broad.mit.edu	37	16	998857	998857	+	Intron	SNP	C	T	T	rs34349854		2011-2321:2012-353-T	g.chr16:998857C>T	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000355	1000355	+	Intron	SNP	G	A	A			2011-2321:2012-353-T	g.chr16:1000355G>A	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
FANCA	2175	broad.mit.edu	37	16	89849583	89849583	+	Intron	SNP	C	T	T	rs2239360	by1000genomes	2011-2321:2012-353-T	g.chr16:89849583C>T	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
NXN	64359	broad.mit.edu	37	17	797285	797285	+	Intron	SNP	T	A	A			2011-2321:2012-353-T	g.chr17:797285T>A	uc002fsa.2	-						NXN_uc002fsb.1_Intron	NM_022463	NP_071908
TP53	7157	broad.mit.edu	37	17	7577105	7577105	+	Missense_Mutation	SNP	G	A	A			2011-2321:2012-353-T	g.chr17:7577105G>A	uc002gim.2	-	8	1027	c.833C>T	c.(832-834)CCT>CTT	p.P278L	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.P278L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P146L|TP53_uc010cng.1_Missense_Mutation_p.P146L|TP53_uc002gii.1_Missense_Mutation_p.P146L|TP53_uc010cnh.1_Missense_Mutation_p.P278L|TP53_uc010cni.1_Missense_Mutation_p.P278L|TP53_uc002gij.2_Missense_Mutation_p.P278L	NM_001126112	NP_001119584
RAD51C	5889	broad.mit.edu	37	17	56783255	56783255	+	Intron	SNP	C	T	T	rs2567901	by1000genomes	2011-2321:2012-353-T	g.chr17:56783255C>T	uc002iwu.2	+						RAD51C_uc010woa.1_Intron|RAD51C_uc010ddc.2_Intron|RAD51C_uc002iwv.2_RNA|RAD51C_uc002iww.2_Intron	NM_058216	NP_478123
DCC	1630	broad.mit.edu	37	18	50936780	50936780	+	Intron	SNP	G	A	A	rs10853631	by1000genomes	2011-2321:2012-353-T	g.chr18:50936780G>A	uc002lfe.1	+						DCC_uc010xdr.1_Intron|DCC_uc010dpf.1_Intron	NM_005215	NP_005206
TSSC1	7260	broad.mit.edu	37	2	3243878	3243878	+	Intron	SNP	C	T	T			2011-2321:2012-353-T	g.chr2:3243878C>T	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
C20orf26	26074	broad.mit.edu	37	20	20336950	20336950	+	Intron	SNP	G	T	T	rs73607409		2011-2321:2012-353-T	g.chr20:20336950G>T	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
ZBTB46	140685	broad.mit.edu	37	20	62447416	62447416	+	Intron	SNP	G	A	A	rs4991876	by1000genomes	2011-2321:2012-353-T	g.chr20:62447416G>A	uc002ygu.2	-						uc002ygw.2_Intron	NM_025224	
HLA-F	3134	broad.mit.edu	37	6	29691090	29691090	+	5'Flank	SNP	T	A	A	rs1362125	by1000genomes	2011-2321:2012-353-T	g.chr6:29691090T>A	uc010jrl.2	+						HLA-F_uc003nnm.3_5'Flank|HLA-F_uc003nno.3_5'Flank|HLA-F_uc011dlx.1_5'Flank|HLA-F_uc011dly.1_5'Flank	NM_018950	NP_061823
PTPRN2	5799	broad.mit.edu	37	7	158144867	158144867	+	Intron	SNP	C	G	G			2011-2321:2012-353-T	g.chr7:158144867C>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ERICH1	157697	broad.mit.edu	37	8	626376	626376	+	Intron	SNP	A	G	G	rs78913982		2011-2321:2012-353-T	g.chr8:626376A>G	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
EPHA2	1969	broad.mit.edu	37	1	16460355	16460355	+	Missense_Mutation	SNP	C	G	G			2011-2322:2012-352-T	g.chr1:16460355C>G	uc001aya.1	-	9	1875	c.1738G>C	c.(1738-1740)GAA>CAA	p.E580Q		NM_004431	NP_004422
COL11A1	1301	broad.mit.edu	37	1	103544222	103544222	+	Silent	SNP	A	C	C			2011-2322:2012-352-T	g.chr1:103544222A>C	uc001dul.2	-	3	798	c.480T>G	c.(478-480)GCT>GCG	p.A160A	COL11A1_uc001dum.2_Silent_p.A160A|COL11A1_uc001dun.2_Silent_p.A160A|COL11A1_uc009weh.2_Silent_p.A160A	NM_001854	NP_001845
NOS1AP	9722	broad.mit.edu	37	1	162334364	162334364	+	Intron	SNP	C	A	A			2011-2322:2012-352-T	g.chr1:162334364C>A	uc001gbv.2	+						NOS1AP_uc010pks.1_Intron|NOS1AP_uc001gbw.2_Intron|NOS1AP_uc009wut.1_Translation_Start_Site	NM_014697	NP_055512
DDR2	4921	broad.mit.edu	37	1	162737215	162737215	+	Intron	SNP	C	A	A			2011-2322:2012-352-T	g.chr1:162737215C>A	uc001gcf.2	+						DDR2_uc001gcg.2_Intron	NM_001014796	NP_001014796
DDR2	4921	broad.mit.edu	37	1	162748410	162748410	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr1:162748410T>C	uc001gcf.2	+	18	2789	c.2324T>C	c.(2323-2325)GTT>GCT	p.V775A	DDR2_uc001gcg.2_Missense_Mutation_p.V775A	NM_001014796	NP_001014796
USH2A	7399	broad.mit.edu	37	1	216172433	216172433	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr1:216172433T>C	uc001hku.1	-							NM_206933	NP_996816
GRK5	2869	broad.mit.edu	37	10	121187299	121187299	+	Intron	SNP	T	G	G			2011-2322:2012-352-T	g.chr10:121187299T>G	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
GRK5	2869	broad.mit.edu	37	10	121187317	121187317	+	Intron	SNP	A	T	T	rs141177791	by1000genomes	2011-2322:2012-352-T	g.chr10:121187317A>T	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
GPR123	84435	broad.mit.edu	37	10	134924996	134924996	+	Intron	SNP	A	T	T	rs66945758	by1000genomes	2011-2322:2012-352-T	g.chr10:134924996A>T	uc001llx.3	+						GPR123_uc001llw.2_Intron	NM_001083909	NP_001077378
MUC2	4583	broad.mit.edu	37	11	1093008	1093008	+	Silent	SNP	C	T	T			2011-2322:2012-352-T	g.chr11:1093008C>T	uc001lsx.1	+	31	11940	c.11913C>T	c.(11911-11913)ATC>ATT	p.I3971I		NM_002457	NP_002448
MAML2	84441	broad.mit.edu	37	11	96076211	96076211	+	5'UTR	SNP	A	G	G			2011-2322:2012-352-T	g.chr11:96076211A>G	uc001pfw.1	-	1						NM_032427	NP_115803
TSPAN9	10867	broad.mit.edu	37	12	3378656	3378656	+	Intron	SNP	C	T	T	rs5018184	by1000genomes	2011-2322:2012-352-T	g.chr12:3378656C>T	uc001qlp.2	+							NM_006675	NP_006666
TSPAN9	10867	broad.mit.edu	37	12	3378658	3378658	+	Intron	SNP	G	C	C	rs5018185	by1000genomes	2011-2322:2012-352-T	g.chr12:3378658G>C	uc001qlp.2	+							NM_006675	NP_006666
TSPAN9	10867	broad.mit.edu	37	12	3378700	3378700	+	Intron	SNP	G	A	A	rs5018186		2011-2322:2012-352-T	g.chr12:3378700G>A	uc001qlp.2	+							NM_006675	NP_006666
EPS8	2059	broad.mit.edu	37	12	15811530	15811530	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr12:15811530A>G	uc009zif.2	-						EPS8_uc001rdb.2_Intron|EPS8_uc009zig.2_Intron|EPS8_uc010shv.1_Intron	NM_004447	NP_004438
KRAS	3845	broad.mit.edu	37	12	25398262	25398262	+	Missense_Mutation	SNP	C	G	G	rs121913538		2011-2322:2012-352-T	g.chr12:25398262C>G	uc001rgp.1	-	2	238	c.57G>C	c.(55-57)TTG>TTC	p.L19F	KRAS_uc001rgq.1_Missense_Mutation_p.L19F|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524
ABCD2	225	broad.mit.edu	37	12	40010858	40010858	+	Missense_Mutation	SNP	A	G	G			2011-2322:2012-352-T	g.chr12:40010858A>G	uc001rmb.2	-	2	1478	c.1052T>C	c.(1051-1053)GTT>GCT	p.V351A		NM_005164	NP_005155
LRRK2	120892	broad.mit.edu	37	12	40668638	40668638	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr12:40668638T>C	uc001rmg.3	+						LRRK2_uc001rmh.1_Intron	NM_198578	NP_940980
MLL2	8085	broad.mit.edu	37	12	49424713	49424713	+	Missense_Mutation	SNP	A	G	G			2011-2322:2012-352-T	g.chr12:49424713A>G	uc001rta.3	-	40	13634	c.13634T>C	c.(13633-13635)GTC>GCC	p.V4545A		NM_003482	NP_003473
TMEM132D	121256	broad.mit.edu	37	12	129573283	129573283	+	Intron	SNP	C	T	T			2011-2322:2012-352-T	g.chr12:129573283C>T	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
TFDP1	7027	broad.mit.edu	37	13	114279897	114279897	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr13:114279897T>C	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
LRFN5	145581	broad.mit.edu	37	14	42356325	42356325	+	Missense_Mutation	SNP	C	A	A			2011-2322:2012-352-T	g.chr14:42356325C>A	uc001wvm.2	+	3	1695	c.497C>A	c.(496-498)GCT>GAT	p.A166D	LRFN5_uc010ana.2_Missense_Mutation_p.A166D	NM_152447	NP_689660
FANCM	57697	broad.mit.edu	37	14	45639980	45639980	+	Intron	SNP	T	C	C	rs76620062	by1000genomes	2011-2322:2012-352-T	g.chr14:45639980T>C	uc001wwd.3	+						FANCM_uc010anf.2_Intron|FANCM_uc001wwe.3_Intron	NM_020937	NP_065988
SYNE2	23224	broad.mit.edu	37	14	64416814	64416814	+	Intron	SNP	A	G	G	rs2775001	by1000genomes	2011-2322:2012-352-T	g.chr14:64416814A>G	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64416898	64416898	+	Intron	SNP	T	G	G	rs2781426	by1000genomes	2011-2322:2012-352-T	g.chr14:64416898T>G	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64428201	64428201	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr14:64428201T>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64522724	64522724	+	Silent	SNP	G	A	A			2011-2322:2012-352-T	g.chr14:64522724G>A	uc001xgm.2	+	49	10037	c.9807G>A	c.(9805-9807)GTG>GTA	p.V3269V	SYNE2_uc001xgl.2_Silent_p.V3269V|SYNE2_uc010apw.1_5'UTR	NM_015180	NP_055995
FOXN3	1112	broad.mit.edu	37	14	89828322	89828322	+	Intron	SNP	T	A	A			2011-2322:2012-352-T	g.chr14:89828322T>A	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
TRIP11	9321	broad.mit.edu	37	14	92471901	92471901	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr14:92471901T>C	uc001xzy.2	-	11	3207	c.2419A>G	c.(2419-2421)ACA>GCA	p.T807A	TRIP11_uc010auf.1_Missense_Mutation_p.T543A	NM_004239	NP_004230
TRAF3	7187	broad.mit.edu	37	14	103371724	103371724	+	Missense_Mutation	SNP	C	A	A			2011-2322:2012-352-T	g.chr14:103371724C>A	uc001ymc.1	+	12	1663	c.1310C>A	c.(1309-1311)ACC>AAC	p.T437N	TRAF3_uc001yme.1_Missense_Mutation_p.T412N|TRAF3_uc001ymd.1_Missense_Mutation_p.T437N|TRAF3_uc010txy.1_Missense_Mutation_p.T354N	NM_145725	NP_663777
MAPKBP1	23005	broad.mit.edu	37	15	42110302	42110302	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr15:42110302A>G	uc001zok.3	+						MAPKBP1_uc001zoj.3_Intron|MAPKBP1_uc010bcj.2_Intron|MAPKBP1_uc010bci.2_Intron|MAPKBP1_uc010udb.1_Intron|MAPKBP1_uc010bck.2_Intron|MAPKBP1_uc010bcl.2_Intron	NM_001128608	NP_001122080
ANXA2	302	broad.mit.edu	37	15	60642156	60642156	+	Intron	SNP	C	G	G	rs8026244		2011-2322:2012-352-T	g.chr15:60642156C>G	uc002agn.2	-						ANXA2_uc002agk.2_Intron|ANXA2_uc002agl.2_Intron|ANXA2_uc002agm.2_Intron|ANXA2_uc010uhd.1_Intron	NM_001136015	NP_001129487
BTBD12	84464	broad.mit.edu	37	16	3658631	3658631	+	Missense_Mutation	SNP	G	A	A			2011-2322:2012-352-T	g.chr16:3658631G>A	uc002cvp.2	-	2	962	c.335C>T	c.(334-336)CCG>CTG	p.P112L	BTBD12_uc002cvq.1_Missense_Mutation_p.P112L	NM_032444	NP_115820
DNAH3	55567	broad.mit.edu	37	16	21139049	21139049	+	Missense_Mutation	SNP	G	C	C			2011-2322:2012-352-T	g.chr16:21139049G>C	uc010vbe.1	-	8	1167	c.1167C>G	c.(1165-1167)ATC>ATG	p.I389M	DNAH3_uc002die.2_Missense_Mutation_p.I360M	NM_017539	NP_060009
PALB2	79728	broad.mit.edu	37	16	23649440	23649440	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr16:23649440T>C	uc002dlx.1	-	2	259	c.59A>G	c.(58-60)AAA>AGA	p.K20R		NM_024675	NP_078951
CYLD	1540	broad.mit.edu	37	16	50821716	50821716	+	Silent	SNP	T	C	C			2011-2322:2012-352-T	g.chr16:50821716T>C	uc002egp.1	+	14	2476	c.2061T>C	c.(2059-2061)AAT>AAC	p.N687N	CYLD_uc010cbs.1_Silent_p.N684N|CYLD_uc002egq.1_Silent_p.N684N|CYLD_uc002egr.1_Silent_p.N684N	NM_015247	NP_056062
TP53	7157	broad.mit.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr17:7578394T>C	uc002gim.2	-	5	730	c.536A>G	c.(535-537)CAT>CGT	p.H179R	TP53_uc002gig.1_Missense_Mutation_p.H179R|TP53_uc002gih.2_Missense_Mutation_p.H179R|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.H47R|TP53_uc010cng.1_Missense_Mutation_p.H47R|TP53_uc002gii.1_Missense_Mutation_p.H47R|TP53_uc010cnh.1_Missense_Mutation_p.H179R|TP53_uc010cni.1_Missense_Mutation_p.H179R|TP53_uc002gij.2_Missense_Mutation_p.H179R|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.H86R|TP53_uc002gio.2_Missense_Mutation_p.H47R|TP53_uc010vug.1_Missense_Mutation_p.H140R	NM_001126112	NP_001119584
ACACA	31	broad.mit.edu	37	17	35456403	35456403	+	Intron	SNP	G	T	T			2011-2322:2012-352-T	g.chr17:35456403G>T	uc002hnm.2	-						ACACA_uc002hnk.2_Intron|ACACA_uc002hnl.2_Intron|ACACA_uc002hnn.2_Intron|ACACA_uc002hno.2_Intron|ACACA_uc010cuy.2_Intron|ACACA_uc010wdb.1_Intron|ACACA_uc010wdc.1_Intron	NM_198836	NP_942133
STAT3	6774	broad.mit.edu	37	17	40489939	40489939	+	Intron	SNP	T	G	G	rs62075766	by1000genomes	2011-2322:2012-352-T	g.chr17:40489939T>G	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
BRCA1	672	broad.mit.edu	37	17	41321896	41321896	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr17:41321896T>C	uc010whp.1	-						uc010czc.2_Intron|NBR1_uc010czd.2_5'Flank|NBR1_uc010diz.2_5'Flank|NBR1_uc010whu.1_5'Flank|NBR1_uc010whv.1_5'Flank|NBR1_uc010whw.1_5'Flank	NM_007298	NP_009229
RSAD1	55316	broad.mit.edu	37	17	48553655	48553655	+	5'Flank	SNP	G	C	C			2011-2322:2012-352-T	g.chr17:48553655G>C	uc002iqw.1	+						RSAD1_uc010wmp.1_5'Flank|RSAD1_uc010wmq.1_5'Flank	NM_018346	NP_060816
PRKCA	5578	broad.mit.edu	37	17	64794950	64794950	+	Intron	SNP	G	T	T			2011-2322:2012-352-T	g.chr17:64794950G>T	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795185	64795185	+	Intron	SNP	G	A	A			2011-2322:2012-352-T	g.chr17:64795185G>A	uc002jfp.1	+							NM_002737	NP_002728
CABLES1	91768	broad.mit.edu	37	18	20798577	20798577	+	Intron	SNP	C	T	T			2011-2322:2012-352-T	g.chr18:20798577C>T	uc002kuc.2	+						C18orf45_uc010xaq.1_Intron|CABLES1_uc002kub.2_Intron|CABLES1_uc002kud.2_Intron	NM_001100619	NP_001094089
PIK3C3	5289	broad.mit.edu	37	18	39550299	39550299	+	Missense_Mutation	SNP	G	A	A			2011-2322:2012-352-T	g.chr18:39550299G>A	uc002lap.2	+	4	468	c.410G>A	c.(409-411)CGC>CAC	p.R137H	PIK3C3_uc010xcl.1_Missense_Mutation_p.R74H|PIK3C3_uc002lao.2_Missense_Mutation_p.R137H	NM_002647	NP_002638
LILRA3	11026	broad.mit.edu	37	19	54803294	54803294	+	Missense_Mutation	SNP	G	A	A			2011-2322:2012-352-T	g.chr19:54803294G>A	uc002qfd.2	-	4	448	c.383C>T	c.(382-384)TCA>TTA	p.S128L	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.S128L	NM_006865	NP_006856
SH3YL1	26751	broad.mit.edu	37	2	235850	235850	+	Intron	SNP	C	T	T			2011-2322:2012-352-T	g.chr2:235850C>T	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
LRP1B	53353	broad.mit.edu	37	2	141597811	141597811	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr2:141597811A>G	uc002tvj.1	-							NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179414537	179414537	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr2:179414537T>C	uc010zfg.1	-	287	84432	c.84208A>G	c.(84208-84210)ACT>GCT	p.T28070A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T21765A|TTN_uc010zfi.1_Missense_Mutation_p.T21698A|TTN_uc010zfj.1_Missense_Mutation_p.T21573A	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179463930	179463930	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr2:179463930T>C	uc010zfg.1	-	239	49110	c.48886A>G	c.(48886-48888)AAA>GAA	p.K16296E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K9991E|TTN_uc010zfi.1_Missense_Mutation_p.K9924E|TTN_uc010zfj.1_Missense_Mutation_p.K9799E	NM_133378	NP_596869
ERBB4	2066	broad.mit.edu	37	2	212251809	212251809	+	Missense_Mutation	SNP	G	T	T			2011-2322:2012-352-T	g.chr2:212251809G>T	uc002veg.1	-	27	3348	c.3250C>A	c.(3250-3252)CCA>ACA	p.P1084T	ERBB4_uc002veh.1_Missense_Mutation_p.P1068T|ERBB4_uc010zji.1_Missense_Mutation_p.P1074T|ERBB4_uc010zjj.1_Missense_Mutation_p.P1058T	NM_005235	NP_005226
EPHA4	2043	broad.mit.edu	37	2	222437059	222437059	+	5'Flank	SNP	A	G	G			2011-2322:2012-352-T	g.chr2:222437059A>G	uc002vmq.2	-						EPHA4_uc002vmr.2_5'Flank|EPHA4_uc010zlm.1_5'Flank|EPHA4_uc010zln.1_Intron|uc002vms.1_5'Flank	NM_004438	NP_004429
TAF4	6874	broad.mit.edu	37	20	60561123	60561123	+	Intron	SNP	A	C	C			2011-2322:2012-352-T	g.chr20:60561123A>C	uc002ybs.2	-							NM_003185	NP_003176
MICAL3	57553	broad.mit.edu	37	22	18359800	18359800	+	Intron	SNP	T	G	G			2011-2322:2012-352-T	g.chr22:18359800T>G	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
EP300	2033	broad.mit.edu	37	22	41531616	41531616	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr22:41531616T>C	uc003azl.3	+							NM_001429	NP_001420
BBX	56987	broad.mit.edu	37	3	107495255	107495255	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr3:107495255A>G	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc003dwm.3_Intron|BBX_uc003dwo.3_Intron	NM_001142568	NP_001136040
BBX	56987	broad.mit.edu	37	3	107517352	107517352	+	Intron	SNP	T	A	A			2011-2322:2012-352-T	g.chr3:107517352T>A	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc003dwm.3_Intron|BBX_uc003dwo.3_Intron	NM_001142568	NP_001136040
EPHB1	2047	broad.mit.edu	37	3	134670235	134670235	+	Missense_Mutation	SNP	A	G	G			2011-2322:2012-352-T	g.chr3:134670235A>G	uc003eqt.2	+	3	366	c.146A>G	c.(145-147)GAT>GGT	p.D49G	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.D49G	NM_004441	NP_004432
SI	6476	broad.mit.edu	37	3	164786536	164786536	+	Missense_Mutation	SNP	G	C	C			2011-2322:2012-352-T	g.chr3:164786536G>C	uc003fei.2	-	5	519	c.457C>G	c.(457-459)CAG>GAG	p.Q153E		NM_001041	NP_001032
PIK3CA	5290	broad.mit.edu	37	3	178947178	178947178	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr3:178947178T>C	uc003fjk.2	+	18	2771	c.2614T>C	c.(2614-2616)TTC>CTC	p.F872L		NM_006218	NP_006209
BCL6	604	broad.mit.edu	37	3	187454437	187454437	+	5'Flank	SNP	A	G	G			2011-2322:2012-352-T	g.chr3:187454437A>G	uc003frp.3	-						BCL6_uc011bsf.1_5'Flank|BCL6_uc010hza.2_5'Flank|BCL6_uc003frq.1_Intron	NM_001130845	NP_001124317
WHSC1	7468	broad.mit.edu	37	4	1977445	1977445	+	Intron	SNP	C	T	T			2011-2322:2012-352-T	g.chr4:1977445C>T	uc003gdz.3	+						WHSC1_uc003geb.3_Intron|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_Intron|WHSC1_uc003gef.3_Intron|WHSC1_uc003gei.3_Intron|WHSC1_uc011bvh.1_Intron|WHSC1_uc010icf.2_Intron	NM_001042424	NP_001035889
AFAP1	60312	broad.mit.edu	37	4	7865857	7865857	+	Intron	SNP	C	G	G	rs147755073	by1000genomes	2011-2322:2012-352-T	g.chr4:7865857C>G	uc003gkg.1	-						AFAP1_uc011bwk.1_Intron	NM_198595	NP_940997
KDR	3791	broad.mit.edu	37	4	55972962	55972962	+	Silent	SNP	C	T	T			2011-2322:2012-352-T	g.chr4:55972962C>T	uc003has.2	-	11	1730	c.1428G>A	c.(1426-1428)GTG>GTA	p.V476V	KDR_uc003hat.1_Silent_p.V476V|KDR_uc011bzx.1_Silent_p.V476V	NM_002253	NP_002244
REST	5978	broad.mit.edu	37	4	57793964	57793964	+	Intron	SNP	C	G	G			2011-2322:2012-352-T	g.chr4:57793964C>G	uc003hch.2	+						REST_uc003hci.2_Intron|REST_uc010ihf.2_Intron	NM_005612	NP_005603
TET2	54790	broad.mit.edu	37	4	106157899	106157899	+	Nonsense_Mutation	SNP	G	T	T			2011-2322:2012-352-T	g.chr4:106157899G>T	uc003hxk.2	+	3	3186	c.2800G>T	c.(2800-2802)GGA>TGA	p.G934*	TET2_uc011cez.1_Nonsense_Mutation_p.G955*|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Nonsense_Mutation_p.G934*|TET2_uc003hxi.1_Nonsense_Mutation_p.G934*	NM_001127208	NP_001120680
FAT4	79633	broad.mit.edu	37	4	126328159	126328159	+	Nonsense_Mutation	SNP	C	A	A			2011-2322:2012-352-T	g.chr4:126328159C>A	uc003ifj.3	+	3	5432	c.5432C>A	c.(5431-5433)TCA>TAA	p.S1811*	FAT4_uc011cgp.1_Nonsense_Mutation_p.S109*	NM_024582	NP_078858
INPP4B	8821	broad.mit.edu	37	4	143129551	143129551	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr4:143129551T>C	uc003iix.3	-						INPP4B_uc003iiw.3_Intron|INPP4B_uc011chm.1_Intron|INPP4B_uc011chn.1_Intron|INPP4B_uc011cho.1_Intron|INPP4B_uc011chp.1_Intron	NM_003866	NP_003857
FAT1	2195	broad.mit.edu	37	4	187521636	187521636	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr4:187521636T>C	uc003izf.2	-							NM_005245	NP_005236
CLPTM1L	81037	broad.mit.edu	37	5	1330019	1330019	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr5:1330019A>G	uc003jch.2	-						CLPTM1L_uc003jcg.2_Intron	NM_030782	NP_110409
CTNND2	1501	broad.mit.edu	37	5	11732346	11732346	+	Missense_Mutation	SNP	C	T	T	rs150306957	byFrequency	2011-2322:2012-352-T	g.chr5:11732346C>T	uc003jfa.1	-	2	221	c.76G>A	c.(76-78)GAG>AAG	p.E26K	CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323
CDH12	1010	broad.mit.edu	37	5	22853593	22853593	+	5'UTR	SNP	G	C	C			2011-2322:2012-352-T	g.chr5:22853593G>C	uc003jgk.2	-	1						NM_004061	NP_004052
MSH3	4437	broad.mit.edu	37	5	80168880	80168880	+	Intron	SNP	T	G	G			2011-2322:2012-352-T	g.chr5:80168880T>G	uc003kgz.2	+							NM_002439	NP_002430
PCDHA1	56147	broad.mit.edu	37	5	140166059	140166059	+	Missense_Mutation	SNP	C	T	T			2011-2322:2012-352-T	g.chr5:140166059C>T	uc003lhb.2	+	1	184	c.184C>T	c.(184-186)CGC>TGC	p.R62C	PCDHA1_uc003lha.2_Missense_Mutation_p.R62C|PCDHA1_uc003lgz.2_Missense_Mutation_p.R62C	NM_018900	NP_061723
PCDHA12	56137	broad.mit.edu	37	5	140256783	140256783	+	Missense_Mutation	SNP	G	A	A			2011-2322:2012-352-T	g.chr5:140256783G>A	uc003lic.2	+	1	1853	c.1726G>A	c.(1726-1728)GCA>ACA	p.A576T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.A576T	NM_018903	NP_061726
MAPK9	5601	broad.mit.edu	37	5	179669770	179669770	+	Intron	SNP	G	A	A			2011-2322:2012-352-T	g.chr5:179669770G>A	uc003mls.3	-						MAPK9_uc003mlt.3_Intron|MAPK9_uc010jlc.2_Intron|MAPK9_uc003mlv.3_Intron	NM_002752	NP_002743
HLA-E	3133	broad.mit.edu	37	6	30460520	30460520	+	Intron	SNP	C	T	T			2011-2322:2012-352-T	g.chr6:30460520C>T	uc003nqg.2	+						HLA-E_uc011dmh.1_Intron	NM_005516	NP_005507
HLA-E	3133	broad.mit.edu	37	6	30460721	30460721	+	3'UTR	SNP	A	C	C			2011-2322:2012-352-T	g.chr6:30460721A>C	uc003nqg.2	+	8					HLA-E_uc011dmh.1_3'UTR	NM_005516	NP_005507
HLA-C	3107	broad.mit.edu	37	6	31237255	31237255	+	Intron	SNP	G	A	A	rs2523609		2011-2322:2012-352-T	g.chr6:31237255G>A	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron	NM_002117	NP_002108
HLA-C	3107	broad.mit.edu	37	6	31237323	31237323	+	Intron	SNP	A	G	G	rs68094471		2011-2322:2012-352-T	g.chr6:31237323A>G	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron	NM_002117	NP_002108
HLA-C	3107	broad.mit.edu	37	6	31237333	31237333	+	Intron	SNP	T	A	A	rs66772001		2011-2322:2012-352-T	g.chr6:31237333T>A	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron	NM_002117	NP_002108
TAP1	6890	broad.mit.edu	37	6	32820422	32820422	+	Intron	SNP	G	T	T			2011-2322:2012-352-T	g.chr6:32820422G>T	uc003ocg.2	-						TAP1_uc011dqi.1_5'UTR|PSMB9_uc011dqj.1_5'Flank|PSMB9_uc003sga.2_5'Flank	NM_000593	NP_000584
COQ3	51805	broad.mit.edu	37	6	99842421	99842421	+	5'Flank	SNP	G	A	A			2011-2322:2012-352-T	g.chr6:99842421G>A	uc003ppk.2	-							NM_017421	NP_059117
SYNE1	23345	broad.mit.edu	37	6	152454652	152454652	+	Intron	SNP	C	G	G			2011-2322:2012-352-T	g.chr6:152454652C>G	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152658256	152658256	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr6:152658256A>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron|SYNE1_uc010kiz.2_5'Flank	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152711395	152711395	+	Intron	SNP	T	A	A	rs214943	by1000genomes	2011-2322:2012-352-T	g.chr6:152711395T>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152717850	152717850	+	Intron	SNP	C	G	G			2011-2322:2012-352-T	g.chr6:152717850C>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152784087	152784087	+	Intron	SNP	C	T	T			2011-2322:2012-352-T	g.chr6:152784087C>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152784665	152784665	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr6:152784665T>C	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
PMS2	5395	broad.mit.edu	37	7	6026790	6026790	+	Nonsense_Mutation	SNP	G	A	A			2011-2322:2012-352-T	g.chr7:6026790G>A	uc003spl.2	-	11	1693	c.1606C>T	c.(1606-1608)CAG>TAG	p.Q536*	PMS2_uc003spj.2_Nonsense_Mutation_p.Q430*|PMS2_uc003spk.2_Nonsense_Mutation_p.Q401*|PMS2_uc011jwl.1_Nonsense_Mutation_p.Q401*|PMS2_uc010ktg.2_Nonsense_Mutation_p.Q225*|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Nonsense_Mutation_p.Q536*	NM_000535	NP_000526
SRPK2	6733	broad.mit.edu	37	7	104783479	104783479	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr7:104783479A>G	uc003vct.2	-						SRPK2_uc003vcu.2_Intron|SRPK2_uc003vcv.2_Intron|SRPK2_uc003vcw.1_Intron	NM_182691	NP_872633
SRPK2	6733	broad.mit.edu	37	7	104801006	104801006	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr7:104801006T>C	uc003vct.2	-	6	723	c.536A>G	c.(535-537)AAA>AGA	p.K179R	SRPK2_uc003vcu.2_Missense_Mutation_p.K179R|SRPK2_uc003vcv.2_Missense_Mutation_p.K190R|SRPK2_uc003vcw.1_Missense_Mutation_p.K179R	NM_182691	NP_872633
LAMB1	3912	broad.mit.edu	37	7	107580392	107580392	+	Intron	SNP	T	G	G			2011-2322:2012-352-T	g.chr7:107580392T>G	uc003vew.2	-						LAMB1_uc003vev.2_Intron	NM_002291	NP_002282
KIAA1549	57670	broad.mit.edu	37	7	138566323	138566323	+	Missense_Mutation	SNP	A	T	T			2011-2322:2012-352-T	g.chr7:138566323A>T	uc011kql.1	-	11	4089	c.4040T>A	c.(4039-4041)ATC>AAC	p.I1347N	KIAA1549_uc011kqi.1_Missense_Mutation_p.I131N|KIAA1549_uc003vuk.3_Missense_Mutation_p.I1297N|KIAA1549_uc011kqj.1_Missense_Mutation_p.I1347N|KIAA1549_uc011kqk.1_Missense_Mutation_p.I131N	NM_020910	NP_065961
EZH2	2146	broad.mit.edu	37	7	148516820	148516820	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr7:148516820A>G	uc003wfd.1	-						EZH2_uc011kug.1_Intron|EZH2_uc003wfb.1_Intron|EZH2_uc003wfc.1_Intron|EZH2_uc011kuh.1_Intron|EZH2_uc011kui.1_Intron|EZH2_uc011kuj.1_Intron	NM_004456	NP_004447
PTPRN2	5799	broad.mit.edu	37	7	158066718	158066718	+	Intron	SNP	C	A	A	rs113350652	by1000genomes	2011-2322:2012-352-T	g.chr7:158066718C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1787460	1787460	+	Intron	SNP	T	G	G	rs147083426	by1000genomes	2011-2322:2012-352-T	g.chr8:1787460T>G	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
UNC5D	137970	broad.mit.edu	37	8	35606110	35606110	+	Missense_Mutation	SNP	T	C	C			2011-2322:2012-352-T	g.chr8:35606110T>C	uc003xjr.1	+	12	2160	c.1832T>C	c.(1831-1833)ATC>ACC	p.I611T	UNC5D_uc003xjs.1_Missense_Mutation_p.I606T|UNC5D_uc003xju.1_Missense_Mutation_p.I187T	NM_080872	NP_543148
ZFHX4	79776	broad.mit.edu	37	8	77764201	77764201	+	Missense_Mutation	SNP	C	G	G			2011-2322:2012-352-T	g.chr8:77764201C>G	uc003yav.2	+	10	5296	c.4909C>G	c.(4909-4911)CAA>GAA	p.Q1637E	ZFHX4_uc003yau.1_Missense_Mutation_p.Q1682E|ZFHX4_uc003yaw.1_Missense_Mutation_p.Q1637E	NM_024721	NP_078997
UBR5	51366	broad.mit.edu	37	8	103299530	103299530	+	Intron	SNP	G	C	C			2011-2322:2012-352-T	g.chr8:103299530G>C	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
RIMS2	9699	broad.mit.edu	37	8	104831667	104831667	+	5'UTR	SNP	C	T	T			2011-2322:2012-352-T	g.chr8:104831667C>T	uc003ylw.2	+	1					RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylq.2_5'UTR|RIMS2_uc003ylr.2_5'UTR	NM_014677	NP_055492
CSMD3	114788	broad.mit.edu	37	8	113243689	113243689	+	Intron	SNP	A	G	G			2011-2322:2012-352-T	g.chr8:113243689A>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113349818	113349818	+	Silent	SNP	A	T	T			2011-2322:2012-352-T	g.chr8:113349818A>T	uc003ynu.2	-	43	6954	c.6795T>A	c.(6793-6795)CTT>CTA	p.L2265L	CSMD3_uc003yns.2_Silent_p.L1467L|CSMD3_uc003ynt.2_Silent_p.L2225L|CSMD3_uc011lhx.1_Silent_p.L2161L|CSMD3_uc003ynw.1_5'UTR	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113657526	113657526	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr8:113657526T>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
PLEC	5339	broad.mit.edu	37	8	144993139	144993139	+	Missense_Mutation	SNP	C	T	T			2011-2322:2012-352-T	g.chr8:144993139C>T	uc003zaf.1	-	32	11431	c.11261G>A	c.(11260-11262)CGC>CAC	p.R3754H	PLEC_uc003zab.1_Missense_Mutation_p.R3617H|PLEC_uc003zac.1_Missense_Mutation_p.R3621H|PLEC_uc003zad.2_Missense_Mutation_p.R3617H|PLEC_uc003zae.1_Missense_Mutation_p.R3585H|PLEC_uc003zag.1_Missense_Mutation_p.R3595H|PLEC_uc003zah.2_Missense_Mutation_p.R3603H|PLEC_uc003zaj.2_Missense_Mutation_p.R3644H	NM_201380	NP_958782
C9orf46	55848	broad.mit.edu	37	9	5469127	5469127	+	Intron	SNP	T	C	C			2011-2322:2012-352-T	g.chr9:5469127T>C	uc003zjd.2	-							NM_018465	NP_060935
FANCB	2187	broad.mit.edu	37	X	14877243	14877243	+	Intron	SNP	G	C	C			2011-2322:2012-352-T	g.chrX:14877243G>C	uc004cwg.1	-						FANCB_uc004cwh.1_Intron	NM_001018113	NP_001018123
HUWE1	10075	broad.mit.edu	37	X	53578136	53578136	+	Missense_Mutation	SNP	C	A	A			2011-2322:2012-352-T	g.chrX:53578136C>A	uc004dsp.2	-	65	9513	c.9111G>T	c.(9109-9111)CAG>CAT	p.Q3037H	HUWE1_uc004dsn.2_Missense_Mutation_p.Q1845H	NM_031407	NP_113584
FLG	2312	broad.mit.edu	37	1	152284329	152284329	+	Missense_Mutation	SNP	C	A	A			2011-2323:2012-311-T	g.chr1:152284329C>A	uc001ezu.1	-	3	3069	c.3033G>T	c.(3031-3033)GAG>GAT	p.E1011D	uc001ezv.2_5'Flank	NM_002016	NP_002007
ADARB2	105	broad.mit.edu	37	10	1369649	1369649	+	Intron	SNP	A	T	T			2011-2323:2012-311-T	g.chr10:1369649A>T	uc009xhq.2	-							NM_018702	NP_061172
GPR123	84435	broad.mit.edu	37	10	134893356	134893356	+	Intron	SNP	G	A	A			2011-2323:2012-311-T	g.chr10:134893356G>A	uc001llw.2	+								
CD248	57124	broad.mit.edu	37	11	66082692	66082692	+	Missense_Mutation	SNP	C	T	T			2011-2323:2012-311-T	g.chr11:66082692C>T	uc001ohm.1	-	1	1824	c.1807G>A	c.(1807-1809)GCC>ACC	p.A603T		NM_020404	NP_065137
KDM5A	5927	broad.mit.edu	37	12	498441	498441	+	5'UTR	SNP	C	T	T			2011-2323:2012-311-T	g.chr12:498441C>T	uc001qif.1	-	1					KDM5A_uc001qie.1_5'UTR|CCDC77_uc009zdk.2_5'Flank|CCDC77_uc010sdp.1_5'Flank|KDM5A_uc010sdn.1_5'UTR|KDM5A_uc010sdo.1_5'UTR	NM_001042603	NP_001036068
GPC5	2262	broad.mit.edu	37	13	92377308	92377308	+	Intron	SNP	G	T	T			2011-2323:2012-311-T	g.chr13:92377308G>T	uc010tif.1	+							NM_004466	NP_004457
TPSD1	23430	broad.mit.edu	37	16	1304992	1304992	+	5'Flank	SNP	T	C	C			2011-2323:2012-311-T	g.chr16:1304992T>C	uc002clb.1	+						TPSD1_uc010brm.1_5'Flank	NM_012217	NP_036349
TP53	7157	broad.mit.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	T	T			2011-2323:2012-311-T	g.chr17:7578413C>T	uc002gim.2	-	5	711	c.517G>A	c.(517-519)GTG>ATG	p.V173M	TP53_uc002gig.1_Missense_Mutation_p.V173M|TP53_uc002gih.2_Missense_Mutation_p.V173M|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.V41M|TP53_uc010cng.1_Missense_Mutation_p.V41M|TP53_uc002gii.1_Missense_Mutation_p.V41M|TP53_uc010cnh.1_Missense_Mutation_p.V173M|TP53_uc010cni.1_Missense_Mutation_p.V173M|TP53_uc002gij.2_Missense_Mutation_p.V173M|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.V80M|TP53_uc002gio.2_Missense_Mutation_p.V41M|TP53_uc010vug.1_Missense_Mutation_p.V134M	NM_001126112	NP_001119584
PQLC1	80148	broad.mit.edu	37	18	77680181	77680181	+	Intron	SNP	A	G	G			2011-2323:2012-311-T	g.chr18:77680181A>G	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
CD8A	925	broad.mit.edu	37	2	87018452	87018452	+	5'UTR	SNP	A	G	G	rs6743139	byFrequency;by1000genomes	2011-2323:2012-311-T	g.chr2:87018452A>G	uc002srt.2	-	1					RMND5A_uc002srs.3_Intron|CD8A_uc002srv.2_Intron|CD8A_uc010ytn.1_Intron|CD8A_uc002sru.2_5'UTR	NM_001768	NP_001759
RMND5A	64795	broad.mit.edu	37	2	87719761	87719761	+	Intron	SNP	C	A	A			2011-2323:2012-311-T	g.chr2:87719761C>A	uc002srs.3	+								
PCBP3	54039	broad.mit.edu	37	21	47235455	47235455	+	Intron	SNP	A	G	G			2011-2323:2012-311-T	g.chr21:47235455A>G	uc010gqb.2	+							NM_020528	NP_065389
CABIN1	23523	broad.mit.edu	37	22	24439425	24439425	+	Silent	SNP	G	T	T			2011-2323:2012-311-T	g.chr22:24439425G>T	uc002zzi.1	+	6	532	c.405G>T	c.(403-405)CTG>CTT	p.L135L	CABIN1_uc002zzj.1_Silent_p.L135L|CABIN1_uc002zzl.1_Silent_p.L135L|CABIN1_uc010guk.1_Silent_p.L90L|CABIN1_uc002zzk.1_Silent_p.L90L	NM_012295	NP_036427
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45196775	45196775	+	Intron	SNP	T	C	C			2011-2323:2012-311-T	g.chr22:45196775T>C	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
SI	6476	broad.mit.edu	37	3	164777677	164777677	+	Intron	SNP	T	G	G	rs9290259	by1000genomes	2011-2323:2012-311-T	g.chr3:164777677T>G	uc003fei.2	-							NM_001041	NP_001032
DSPP	1834	broad.mit.edu	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	A	A			2011-2323:2012-311-T	g.chr4:88536953G>A	uc003hqu.2	+	5	3259	c.3139G>A	c.(3139-3141)GAT>AAT	p.D1047N		NM_014208	NP_055023
FAT1	2195	broad.mit.edu	37	4	187538231	187538231	+	Silent	SNP	G	A	A			2011-2323:2012-311-T	g.chr4:187538231G>A	uc003izf.2	-	11	9191	c.9003C>T	c.(9001-9003)GGC>GGT	p.G3001G		NM_005245	NP_005236
FAT1	2195	broad.mit.edu	37	4	187584670	187584670	+	Silent	SNP	C	T	T			2011-2323:2012-311-T	g.chr4:187584670C>T	uc003izf.2	-	3	3551	c.3363G>A	c.(3361-3363)TCG>TCA	p.S1121S		NM_005245	NP_005236
TAP1	6890	broad.mit.edu	37	6	32816866	32816866	+	Silent	SNP	G	A	A			2011-2323:2012-311-T	g.chr6:32816866G>A	uc003ocg.2	-	6	1613	c.1458C>T	c.(1456-1458)ATC>ATT	p.I486I	TAP1_uc011dqi.1_Silent_p.I225I	NM_000593	NP_000584
PKHD1	5314	broad.mit.edu	37	6	51720652	51720652	+	Intron	SNP	G	A	A			2011-2323:2012-311-T	g.chr6:51720652G>A	uc003pah.1	-						PKHD1_uc010jzn.1_Intron|PKHD1_uc003pai.2_Intron	NM_138694	NP_619639
EXOC4	60412	broad.mit.edu	37	7	133502210	133502210	+	Silent	SNP	A	G	G			2011-2323:2012-311-T	g.chr7:133502210A>G	uc003vrk.2	+	11	1682	c.1647A>G	c.(1645-1647)GAA>GAG	p.E549E	EXOC4_uc011kpo.1_Silent_p.E448E|EXOC4_uc003vrl.2_Silent_p.E159E|EXOC4_uc011kpp.1_Silent_p.E81E	NM_021807	NP_068579
PTPRN2	5799	broad.mit.edu	37	7	157509700	157509700	+	Intron	SNP	C	T	T	rs71538050		2011-2323:2012-311-T	g.chr7:157509700C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
CSMD3	114788	broad.mit.edu	37	8	113484907	113484907	+	Nonsense_Mutation	SNP	C	A	A			2011-2323:2012-311-T	g.chr8:113484907C>A	uc003ynu.2	-	32	5467	c.5308G>T	c.(5308-5310)GAA>TAA	p.E1770*	CSMD3_uc003yns.2_Nonsense_Mutation_p.E1042*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.E1730*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.E1666*	NM_198123	NP_937756
TSC1	7248	broad.mit.edu	37	9	135772808	135772808	+	Splice_Site	SNP	A	T	T	rs118203736		2011-2323:2012-311-T	g.chr9:135772808A>T	uc004cca.2	-	21	3047	c.2813_splice	c.e21+1	p.R938_splice	TSC1_uc004ccb.3_Splice_Site_p.R937_splice|TSC1_uc011mcq.1_Splice_Site_p.R887_splice|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359
QSOX2	169714	broad.mit.edu	37	9	139128761	139128761	+	Intron	SNP	C	A	A			2011-2323:2012-311-T	g.chr9:139128761C>A	uc010nbi.2	-							NM_181701	NP_859052
AGBL4	84871	broad.mit.edu	37	1	49843724	49843724	+	Intron	SNP	C	T	T			2011-2324:2012-339-T	g.chr1:49843724C>T	uc001cru.2	-						AGBL4_uc010omw.1_Intron|AGBL4_uc010omx.1_Intron	NM_032785	NP_116174
SPAG17	200162	broad.mit.edu	37	1	118570897	118570897	+	Missense_Mutation	SNP	C	T	T			2011-2324:2012-339-T	g.chr1:118570897C>T	uc001ehk.2	-	26	3798	c.3730G>A	c.(3730-3732)GGT>AGT	p.G1244S		NM_206996	NP_996879
FLG	2312	broad.mit.edu	37	1	152284328	152284328	+	Missense_Mutation	SNP	T	C	C			2011-2324:2012-339-T	g.chr1:152284328T>C	uc001ezu.1	-	3	3070	c.3034A>G	c.(3034-3036)ACT>GCT	p.T1012A	uc001ezv.2_5'Flank	NM_002016	NP_002007
ASH1L	55870	broad.mit.edu	37	1	155448058	155448058	+	Missense_Mutation	SNP	G	A	A			2011-2324:2012-339-T	g.chr1:155448058G>A	uc009wqq.2	-	3	5083	c.4603C>T	c.(4603-4605)CGT>TGT	p.R1535C	ASH1L_uc001fkt.2_Missense_Mutation_p.R1535C|ASH1L_uc009wqr.1_Missense_Mutation_p.R1535C	NM_018489	NP_060959
ARHGAP30	257106	broad.mit.edu	37	1	161018256	161018256	+	Missense_Mutation	SNP	C	G	G			2011-2324:2012-339-T	g.chr1:161018256C>G	uc001fxl.2	-	12	2901	c.2555G>C	c.(2554-2556)GGA>GCA	p.G852A	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Missense_Mutation_p.G698A|ARHGAP30_uc009wtx.2_Missense_Mutation_p.G525A	NM_001025598	NP_001020769
CNST	163882	broad.mit.edu	37	1	246783868	246783868	+	Intron	SNP	G	A	A	rs61852392	by1000genomes	2011-2324:2012-339-T	g.chr1:246783868G>A	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
CUBN	8029	broad.mit.edu	37	10	17171788	17171788	+	5'UTR	SNP	G	A	A			2011-2324:2012-339-T	g.chr10:17171788G>A	uc001ioo.2	-	1						NM_001081	NP_001072
MLLT10	8028	broad.mit.edu	37	10	22002793	22002793	+	Nonsense_Mutation	SNP	C	T	T			2011-2324:2012-339-T	g.chr10:22002793C>T	uc001iqs.2	+	15	2188	c.1840C>T	c.(1840-1842)CAG>TAG	p.Q614*	MLLT10_uc001iqt.2_Nonsense_Mutation_p.Q598*|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Nonsense_Mutation_p.Q598*|MLLT10_uc001ira.2_Nonsense_Mutation_p.Q55*|MLLT10_uc001irb.2_RNA	NM_004641	NP_004632
GRK5	2869	broad.mit.edu	37	10	121187410	121187410	+	Intron	SNP	C	T	T			2011-2324:2012-339-T	g.chr10:121187410C>T	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
VWA5A	4013	broad.mit.edu	37	11	124005764	124005764	+	Intron	SNP	C	T	T			2011-2324:2012-339-T	g.chr11:124005764C>T	uc001pzu.2	+						VWA5A_uc001pzt.2_Intron	NM_001130142	NP_001123614
TRIP11	9321	broad.mit.edu	37	14	92473943	92473943	+	Intron	SNP	T	C	C	rs3818095	by1000genomes	2011-2324:2012-339-T	g.chr14:92473943T>C	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
RAB40C	57799	broad.mit.edu	37	16	663136	663136	+	Intron	SNP	C	T	T			2011-2324:2012-339-T	g.chr16:663136C>T	uc002chr.2	+						RAB40C_uc002chq.2_Intron	NM_021168	NP_066991
ABR	29	broad.mit.edu	37	17	970350	970350	+	Silent	SNP	C	T	T			2011-2324:2012-339-T	g.chr17:970350C>T	uc002fsd.2	-	10	1259	c.1149G>A	c.(1147-1149)AAG>AAA	p.K383K	ABR_uc002fse.2_Silent_p.K337K|ABR_uc010vqg.1_Silent_p.K165K|ABR_uc002fsg.2_Silent_p.K346K|ABR_uc002fsh.1_Silent_p.K267K	NM_021962	NP_068781
LAMA1	284217	broad.mit.edu	37	18	6995453	6995453	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr18:6995453G>A	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
ZNF521	25925	broad.mit.edu	37	18	22805224	22805224	+	Silent	SNP	G	A	A			2011-2324:2012-339-T	g.chr18:22805224G>A	uc002kvk.2	-	4	2905	c.2658C>T	c.(2656-2658)TAC>TAT	p.Y886Y	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.Y886Y|ZNF521_uc002kvl.2_Silent_p.Y666Y	NM_015461	NP_056276
PHLPP1	23239	broad.mit.edu	37	18	60570196	60570196	+	Splice_Site	SNP	G	A	A			2011-2324:2012-339-T	g.chr18:60570196G>A	uc002lis.2	+	8	1087	c.909_splice	c.e8-1	p.R303_splice		NM_194449	NP_919431
MYO1F	4542	broad.mit.edu	37	19	8608745	8608745	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr19:8608745G>A	uc002mkg.2	-							NM_012335	NP_036467
INPP4A	3631	broad.mit.edu	37	2	99152748	99152748	+	Intron	SNP	C	T	T			2011-2324:2012-339-T	g.chr2:99152748C>T	uc002syy.2	+						INPP4A_uc010yvj.1_Intron|INPP4A_uc010yvk.1_Intron|INPP4A_uc002syx.2_Intron|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696
AGXT	189	broad.mit.edu	37	2	241811840	241811840	+	Intron	SNP	G	C	C	rs62189566		2011-2324:2012-339-T	g.chr2:241811840G>C	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
BAGE2	85319	broad.mit.edu	37	21	11098884	11098884	+	5'UTR	SNP	C	T	T			2011-2324:2012-339-T	g.chr21:11098884C>T	uc002yit.1	-	1					BAGE_uc002yix.2_RNA	NM_182482	NP_872288
EP300	2033	broad.mit.edu	37	22	41574962	41574962	+	3'UTR	SNP	G	A	A			2011-2324:2012-339-T	g.chr22:41574962G>A	uc003azl.3	+	31						NM_001429	NP_001420
SRGAP3	9901	broad.mit.edu	37	3	9055137	9055137	+	Missense_Mutation	SNP	C	T	T			2011-2324:2012-339-T	g.chr3:9055137C>T	uc003brf.1	-	17	2678	c.2002G>A	c.(2002-2004)GAT>AAT	p.D668N	SRGAP3_uc003brg.1_Missense_Mutation_p.D644N	NM_014850	NP_055665
MST1R	4486	broad.mit.edu	37	3	49936815	49936815	+	Intron	SNP	G	C	C			2011-2324:2012-339-T	g.chr3:49936815G>C	uc003cxy.3	-						MST1R_uc011bdd.1_Intron|MST1R_uc011bde.1_Intron|MST1R_uc011bdf.1_Intron|MST1R_uc011bdg.1_Intron|MST1R_uc011bdc.1_5'Flank	NM_002447	NP_002438
POLQ	10721	broad.mit.edu	37	3	121228422	121228422	+	Missense_Mutation	SNP	G	A	A			2011-2324:2012-339-T	g.chr3:121228422G>A	uc003eee.3	-	12	2074	c.1945C>T	c.(1945-1947)CAT>TAT	p.H649Y		NM_199420	NP_955452
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2011-2324:2012-339-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
TP63	8626	broad.mit.edu	37	3	189585599	189585599	+	Intron	SNP	G	T	T			2011-2324:2012-339-T	g.chr3:189585599G>T	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189585684	189585684	+	Silent	SNP	G	A	A			2011-2324:2012-339-T	g.chr3:189585684G>A	uc003fry.2	+	7	1034	c.945G>A	c.(943-945)GGG>GGA	p.G315G	TP63_uc003frx.2_Silent_p.G315G|TP63_uc003frz.2_Silent_p.G315G|TP63_uc010hzc.1_Silent_p.G315G|TP63_uc003fsa.2_Silent_p.G221G|TP63_uc003fsb.2_Silent_p.G221G|TP63_uc003fsc.2_Silent_p.G221G|TP63_uc003fsd.2_Silent_p.G221G|TP63_uc010hzd.1_Silent_p.G136G|TP63_uc003fse.1_Silent_p.G196G	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189586425	189586425	+	Missense_Mutation	SNP	G	A	A			2011-2324:2012-339-T	g.chr3:189586425G>A	uc003fry.2	+	8	1138	c.1049G>A	c.(1048-1050)AGA>AAA	p.R350K	TP63_uc003frx.2_Missense_Mutation_p.R350K|TP63_uc003frz.2_Missense_Mutation_p.R350K|TP63_uc010hzc.1_Missense_Mutation_p.R350K|TP63_uc003fsa.2_Missense_Mutation_p.R256K|TP63_uc003fsb.2_Missense_Mutation_p.R256K|TP63_uc003fsc.2_Missense_Mutation_p.R256K|TP63_uc003fsd.2_Missense_Mutation_p.R256K|TP63_uc010hzd.1_Missense_Mutation_p.R171K|TP63_uc003fse.1_Missense_Mutation_p.R231K	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189586513	189586513	+	Intron	SNP	G	C	C			2011-2324:2012-339-T	g.chr3:189586513G>C	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189586616	189586616	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr3:189586616G>A	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189586644	189586644	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr3:189586644G>A	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189587156	189587156	+	Silent	SNP	G	A	A			2011-2324:2012-339-T	g.chr3:189587156G>A	uc003fry.2	+	9	1262	c.1173G>A	c.(1171-1173)AAG>AAA	p.K391K	TP63_uc003frx.2_Silent_p.K391K|TP63_uc003frz.2_Silent_p.K391K|TP63_uc010hzc.1_Silent_p.K391K|TP63_uc003fsa.2_Silent_p.K297K|TP63_uc003fsb.2_Silent_p.K297K|TP63_uc003fsc.2_Silent_p.K297K|TP63_uc003fsd.2_Silent_p.K297K|TP63_uc010hzd.1_Silent_p.K212K|TP63_uc003fse.1_Silent_p.K268K	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195498049	195498049	+	Intron	SNP	T	C	C			2011-2324:2012-339-T	g.chr3:195498049T>C	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FGFR3	2261	broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	G	G	rs121913483		2011-2324:2012-339-T	g.chr4:1803568C>G	uc003gdr.3	+	7	1002	c.746C>G	c.(745-747)TCC>TGC	p.S249C	FGFR3_uc003gdu.2_Missense_Mutation_p.S249C|FGFR3_uc003gds.3_Missense_Mutation_p.S249C|FGFR3_uc003gdq.3_Missense_Mutation_p.S249C|FGFR3_uc010icb.1_Missense_Mutation_p.S91C|FGFR3_uc003gdt.1_Missense_Mutation_p.S91C	NM_000142	NP_000133
PPP2R2C	5522	broad.mit.edu	37	4	6513600	6513600	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr4:6513600G>A	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
FBXW7	55294	broad.mit.edu	37	4	153249460	153249460	+	Missense_Mutation	SNP	C	T	T			2011-2324:2012-339-T	g.chr4:153249460C>T	uc003ims.2	-	9	1467	c.1318G>A	c.(1318-1320)GAT>AAT	p.D440N	FBXW7_uc011cii.1_Missense_Mutation_p.D440N|FBXW7_uc003imt.2_Missense_Mutation_p.D440N|FBXW7_uc011cih.1_Missense_Mutation_p.D264N|FBXW7_uc003imq.2_Missense_Mutation_p.D360N|FBXW7_uc003imr.2_Missense_Mutation_p.D322N	NM_033632	NP_361014
FAT1	2195	broad.mit.edu	37	4	187525627	187525627	+	Missense_Mutation	SNP	A	C	C			2011-2324:2012-339-T	g.chr4:187525627A>C	uc003izf.2	-	18	10640	c.10452T>G	c.(10450-10452)AAT>AAG	p.N3484K		NM_005245	NP_005236
DNAH5	1767	broad.mit.edu	37	5	13766322	13766322	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr5:13766322G>A	uc003jfd.2	-						DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360
CDH12	1010	broad.mit.edu	37	5	21783548	21783548	+	Missense_Mutation	SNP	C	T	T			2011-2324:2012-339-T	g.chr5:21783548C>T	uc010iuc.2	-	8	1770	c.1312G>A	c.(1312-1314)GAA>AAA	p.E438K	CDH12_uc011cno.1_Missense_Mutation_p.E398K|CDH12_uc003jgk.2_Missense_Mutation_p.E438K	NM_004061	NP_004052
APC	324	broad.mit.edu	37	5	112101976	112101976	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr5:112101976G>A	uc010jby.2	+						APC_uc011cvt.1_Intron|APC_uc003kpz.3_Intron|APC_uc003kpy.3_Intron|APC_uc010jbz.2_Intron	NM_001127511	NP_001120983
APC	324	broad.mit.edu	37	5	112128244	112128244	+	Intron	SNP	C	T	T			2011-2324:2012-339-T	g.chr5:112128244C>T	uc010jby.2	+						APC_uc011cvt.1_Intron|APC_uc003kpz.3_Intron|APC_uc003kpy.3_Intron|APC_uc010jbz.2_Intron	NM_001127511	NP_001120983
HLA-A	3105	broad.mit.edu	37	6	29912407	29912407	+	Intron	SNP	G	T	T			2011-2324:2012-339-T	g.chr6:29912407G>T	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Silent_p.V342V|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_Silent_p.V221V	NM_002116	NP_002107
COQ3	51805	broad.mit.edu	37	6	99825333	99825333	+	Missense_Mutation	SNP	G	C	C			2011-2324:2012-339-T	g.chr6:99825333G>C	uc003ppk.2	-	4	442	c.415C>G	c.(415-417)CAC>GAC	p.H139D		NM_017421	NP_059117
SYNE1	23345	broad.mit.edu	37	6	152639250	152639250	+	Missense_Mutation	SNP	C	G	G	rs138745849	byFrequency	2011-2324:2012-339-T	g.chr6:152639250C>G	uc010kiw.2	-	86	17140	c.16538G>C	c.(16537-16539)AGA>ACA	p.R5513T	SYNE1_uc010kiv.2_Missense_Mutation_p.R37T|SYNE1_uc003qos.3_Missense_Mutation_p.R37T|SYNE1_uc003qot.3_Missense_Mutation_p.R5442T|SYNE1_uc003qou.3_Missense_Mutation_p.R5513T|SYNE1_uc010kiz.2_Missense_Mutation_p.R1268T	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152949647	152949647	+	5'UTR	SNP	C	G	G			2011-2324:2012-339-T	g.chr6:152949647C>G	uc010kiw.2	-	3					SYNE1_uc003qot.3_5'UTR|SYNE1_uc003qou.3_5'UTR|SYNE1_uc010kjb.1_5'UTR|SYNE1_uc003qpa.1_5'UTR	NM_182961	NP_892006
TRRAP	8295	broad.mit.edu	37	7	98565130	98565130	+	Missense_Mutation	SNP	G	A	A			2011-2324:2012-339-T	g.chr7:98565130G>A	uc003upp.2	+	50	7509	c.7300G>A	c.(7300-7302)GAG>AAG	p.E2434K	TRRAP_uc011kis.1_Missense_Mutation_p.E2416K|TRRAP_uc003upr.2_Missense_Mutation_p.E2133K	NM_003496	NP_003487
LAMB1	3912	broad.mit.edu	37	7	107644050	107644050	+	5'Flank	SNP	G	C	C			2011-2324:2012-339-T	g.chr7:107644050G>C	uc003vew.2	-						LAMB1_uc003vev.2_5'Flank|LAMB1_uc003vex.2_5'Flank|LAMB1_uc010ljn.1_5'Flank	NM_002291	NP_002282
CSMD3	114788	broad.mit.edu	37	8	113316921	113316921	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr8:113316921G>A	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
MYC	4609	broad.mit.edu	37	8	128752671	128752671	+	Missense_Mutation	SNP	G	C	C			2011-2324:2012-339-T	g.chr8:128752671G>C	uc003ysi.2	+	3	1357	c.832G>C	c.(832-834)GAT>CAT	p.D278H		NM_002467	NP_002458
EHMT1	79813	broad.mit.edu	37	9	140619542	140619542	+	Intron	SNP	G	A	A			2011-2324:2012-339-T	g.chr9:140619542G>A	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
PPP2R3B	28227	broad.mit.edu	37	X	324356	324356	+	Intron	SNP	T	C	C			2011-2324:2012-339-T	g.chrX:324356T>C	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
ODZ1	10178	broad.mit.edu	37	X	124098068	124098068	+	5'Flank	SNP	G	C	C			2011-2324:2012-339-T	g.chrX:124098068G>C	uc004euj.2	-						ODZ1_uc011muj.1_5'Flank|ODZ1_uc010nqy.2_5'Flank	NM_014253	NP_055068
ODZ1	10178	broad.mit.edu	37	X	124098176	124098176	+	5'Flank	SNP	G	C	C			2011-2324:2012-339-T	g.chrX:124098176G>C	uc004euj.2	-						ODZ1_uc011muj.1_5'Flank|ODZ1_uc010nqy.2_5'Flank	NM_014253	NP_055068
DDR2	4921	broad.mit.edu	37	1	162724571	162724571	+	Missense_Mutation	SNP	G	T	T			2011-2325:2012-337-T	g.chr1:162724571G>T	uc001gcf.2	+	6	808	c.343G>T	c.(343-345)GCC>TCC	p.A115S	DDR2_uc001gcg.2_Missense_Mutation_p.A115S	NM_001014796	NP_001014796
PCDH15	65217	broad.mit.edu	37	10	55591121	55591121	+	Missense_Mutation	SNP	G	T	T			2011-2325:2012-337-T	g.chr10:55591121G>T	uc001jju.1	-	30	4551	c.4156C>A	c.(4156-4158)CTC>ATC	p.L1386I	PCDH15_uc010qhq.1_Missense_Mutation_p.L1391I|PCDH15_uc010qhr.1_Missense_Mutation_p.L1386I|PCDH15_uc010qhs.1_Missense_Mutation_p.L1398I|PCDH15_uc010qht.1_Missense_Mutation_p.L1393I|PCDH15_uc010qhu.1_Missense_Mutation_p.L1386I|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.L1386I|PCDH15_uc010qhw.1_Missense_Mutation_p.L1349I|PCDH15_uc010qhx.1_Missense_Mutation_p.L1315I|PCDH15_uc010qhy.1_Missense_Mutation_p.L1391I|PCDH15_uc010qhz.1_Missense_Mutation_p.L1386I|PCDH15_uc010qia.1_Missense_Mutation_p.L1364I|PCDH15_uc010qib.1_Missense_Mutation_p.L1364I	NM_033056	NP_149045
BIRC3	330	broad.mit.edu	37	11	102207851	102207851	+	3'UTR	SNP	G	A	A	rs1055088	by1000genomes	2011-2325:2012-337-T	g.chr11:102207851G>A	uc001pgx.2	+	10						NM_182962	NP_892007
B3GAT1	27087	broad.mit.edu	37	11	134278409	134278410	+	Intron	DNP	CC	GT	GT			2011-2325:2012-337-T	g.chr11:134278409_134278410CC>GT	uc001qhq.2	-						B3GAT1_uc001qhr.2_Intron	NM_018644	NP_061114
TSPAN9	10867	broad.mit.edu	37	12	3308054	3308054	+	Intron	SNP	T	C	C	rs61917910	by1000genomes	2011-2325:2012-337-T	g.chr12:3308054T>C	uc001qlp.2	+							NM_006675	NP_006666
PIK3C2G	5288	broad.mit.edu	37	12	18435469	18435469	+	Missense_Mutation	SNP	G	T	T			2011-2325:2012-337-T	g.chr12:18435469G>T	uc001rdt.2	+	2	570	c.454G>T	c.(454-456)GAT>TAT	p.D152Y	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.D152Y|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561
PDE3A	5139	broad.mit.edu	37	12	20774290	20774290	+	Silent	SNP	A	G	G			2011-2325:2012-337-T	g.chr12:20774290A>G	uc001reh.1	+	5	1507	c.1485A>G	c.(1483-1485)TCA>TCG	p.S495S		NM_000921	NP_000912
RPLP1	6176	broad.mit.edu	37	15	69745444	69745444	+	Intron	SNP	C	T	T			2011-2325:2012-337-T	g.chr15:69745444C>T	uc002asd.1	+						RPLP1_uc002ase.1_Intron	NM_001003	NP_000994
LMF1	64788	broad.mit.edu	37	16	907446	907446	+	Intron	SNP	G	A	A			2011-2325:2012-337-T	g.chr16:907446G>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
TP53	7157	broad.mit.edu	37	17	7577575	7577575	+	Missense_Mutation	SNP	A	G	G			2011-2325:2012-337-T	g.chr17:7577575A>G	uc002gim.2	-	7	900	c.706T>C	c.(706-708)TAC>CAC	p.Y236H	TP53_uc002gig.1_Missense_Mutation_p.Y236H|TP53_uc002gih.2_Missense_Mutation_p.Y236H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.Y104H|TP53_uc010cng.1_Missense_Mutation_p.Y104H|TP53_uc002gii.1_Missense_Mutation_p.Y104H|TP53_uc010cnh.1_Missense_Mutation_p.Y236H|TP53_uc010cni.1_Missense_Mutation_p.Y236H|TP53_uc002gij.2_Missense_Mutation_p.Y236H|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.Y143H|TP53_uc002gio.2_Missense_Mutation_p.Y104H	NM_001126112	NP_001119584
MYH13	8735	broad.mit.edu	37	17	10227504	10227504	+	Silent	SNP	G	C	C			2011-2325:2012-337-T	g.chr17:10227504G>C	uc002gmk.1	-	23	2859	c.2769C>G	c.(2767-2769)GTC>GTG	p.V923V	MYH13_uc010vve.1_Silent_p.V21V	NM_003802	NP_003793
AATK	9625	broad.mit.edu	37	17	79114703	79114703	+	Intron	SNP	G	A	A			2011-2325:2012-337-T	g.chr17:79114703G>A	uc010dia.2	-							NM_001080395	NP_001073864
KEAP1	9817	broad.mit.edu	37	19	10602926	10602926	+	Missense_Mutation	SNP	C	G	G			2011-2325:2012-337-T	g.chr19:10602926C>G	uc002moq.1	-	3	808	c.652G>C	c.(652-654)GAG>CAG	p.E218Q	KEAP1_uc002mop.1_5'UTR|KEAP1_uc002mor.1_Missense_Mutation_p.E218Q	NM_012289	NP_036421
ATIC	471	broad.mit.edu	37	2	216209519	216209519	+	Silent	SNP	C	T	T			2011-2325:2012-337-T	g.chr2:216209519C>T	uc002vex.3	+	13	1419	c.1245C>T	c.(1243-1245)CTC>CTT	p.L415L	ATIC_uc010zjo.1_Silent_p.L356L|ATIC_uc002vey.3_Silent_p.L414L	NM_004044	NP_004035
CUL3	8452	broad.mit.edu	37	2	225378243	225378243	+	Nonsense_Mutation	SNP	G	A	A			2011-2325:2012-337-T	g.chr2:225378243G>A	uc002vny.2	-	5	1036	c.652C>T	c.(652-654)CAG>TAG	p.Q218*	CUL3_uc010zls.1_Nonsense_Mutation_p.Q152*|CUL3_uc010fwy.1_Nonsense_Mutation_p.Q224*	NM_003590	NP_003581
DNAH5	1767	broad.mit.edu	37	5	13751282	13751282	+	Nonsense_Mutation	SNP	C	A	A			2011-2325:2012-337-T	g.chr5:13751282C>A	uc003jfd.2	-	65	11158	c.11116G>T	c.(11116-11118)GAG>TAG	p.E3706*	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360
SCML4	256380	broad.mit.edu	37	6	108103903	108103903	+	Intron	SNP	C	G	G			2011-2325:2012-337-T	g.chr6:108103903C>G	uc010kdf.2	-						SCML4_uc003prz.3_Intron|SCML4_uc011eam.1_Intron	NM_198081	NP_932347
SYNE1	23345	broad.mit.edu	37	6	152697958	152697958	+	Silent	SNP	C	T	T			2011-2325:2012-337-T	g.chr6:152697958C>T	uc010kiw.2	-	57	9701	c.9099G>A	c.(9097-9099)CTG>CTA	p.L3033L	SYNE1_uc003qot.3_Silent_p.L3040L|SYNE1_uc003qou.3_Silent_p.L3033L|SYNE1_uc010kja.1_5'UTR|SYNE1_uc003qov.2_Silent_p.L111L|SYNE1_uc010kjb.1_Silent_p.L3016L	NM_182961	NP_892006
KIAA1549	57670	broad.mit.edu	37	7	138602271	138602271	+	Missense_Mutation	SNP	C	T	T			2011-2325:2012-337-T	g.chr7:138602271C>T	uc011kql.1	-	2	2150	c.2101G>A	c.(2101-2103)GAG>AAG	p.E701K	KIAA1549_uc003vuk.3_Missense_Mutation_p.E651K|KIAA1549_uc011kqj.1_Missense_Mutation_p.E701K	NM_020910	NP_065961
PKHD1L1	93035	broad.mit.edu	37	8	110466385	110466385	+	Intron	SNP	A	G	G			2011-2325:2012-337-T	g.chr8:110466385A>G	uc003yne.2	+							NM_177531	NP_803875
NOTCH1	4851	broad.mit.edu	37	9	139412829	139412829	+	Intron	SNP	A	G	G	rs116547005	by1000genomes	2011-2325:2012-337-T	g.chr9:139412829A>G	uc004chz.2	-							NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139417333	139417333	+	Silent	SNP	G	A	A	rs61751557	byFrequency;by1000genomes	2011-2325:2012-337-T	g.chr9:139417333G>A	uc004chz.2	-	4	711	c.711C>T	c.(709-711)GGC>GGT	p.G237G		NM_017617	NP_060087
EPHA2	1969	broad.mit.edu	37	1	16482976	16482976	+	5'Flank	SNP	A	G	G	rs6603883	by1000genomes	2011-2326:2012-336-T	g.chr1:16482976A>G	uc001aya.1	-						EPHA2_uc010oca.1_5'Flank	NM_004431	NP_004422
YY1AP1	55249	broad.mit.edu	37	1	155658085	155658085	+	Intron	SNP	T	C	C	rs2666826	by1000genomes	2011-2326:2012-336-T	g.chr1:155658085T>C	uc001fln.2	-						YY1AP1_uc010pgi.1_Silent_p.E57E|YY1AP1_uc001flh.2_Silent_p.E57E|YY1AP1_uc009wqt.2_5'UTR|YY1AP1_uc001flk.2_Intron|YY1AP1_uc001fll.2_Intron|YY1AP1_uc009wqv.2_Intron|YY1AP1_uc001flm.2_Intron|YY1AP1_uc001fli.2_Intron|YY1AP1_uc009wqu.2_Intron|YY1AP1_uc001flj.2_Intron|YY1AP1_uc009wqw.2_Intron|YY1AP1_uc001flo.2_Intron|YY1AP1_uc001flp.2_Intron|YY1AP1_uc010pgj.1_Intron|YY1AP1_uc009wqx.2_Silent_p.E57E|YY1AP1_uc010pgk.1_Silent_p.E57E|DAP3_uc001flq.2_5'Flank|DAP3_uc001flr.2_5'Flank|DAP3_uc001fls.2_5'Flank|DAP3_uc010pgl.1_5'Flank|DAP3_uc001flt.2_5'Flank|DAP3_uc001flu.2_5'Flank|DAP3_uc010pgm.1_5'Flank	NM_139118	NP_620829
DIP2C	22982	broad.mit.edu	37	10	463840	463840	+	Intron	SNP	G	C	C			2011-2326:2012-336-T	g.chr10:463840G>C	uc001ifp.2	-							NM_014974	NP_055789
GRK5	2869	broad.mit.edu	37	10	121051603	121051603	+	Intron	SNP	T	C	C			2011-2326:2012-336-T	g.chr10:121051603T>C	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
F7	2155	broad.mit.edu	37	13	113762696	113762696	+	Intron	SNP	T	A	A			2011-2326:2012-336-T	g.chr13:113762696T>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
DSEL	92126	broad.mit.edu	37	18	65178690	65178690	+	Missense_Mutation	SNP	C	G	G			2011-2326:2012-336-T	g.chr18:65178690C>G	uc002lke.1	-	2	4410	c.3186G>C	c.(3184-3186)AAG>AAC	p.K1062N		NM_032160	NP_115536
PKP4	8502	broad.mit.edu	37	2	159477576	159477576	+	Missense_Mutation	SNP	G	C	C	rs145967976		2011-2326:2012-336-T	g.chr2:159477576G>C	uc002tzv.2	+	5	615	c.355G>C	c.(355-357)GAG>CAG	p.E119Q	PKP4_uc002tzt.1_5'UTR|PKP4_uc002tzu.2_Missense_Mutation_p.E119Q|PKP4_uc002tzw.2_Missense_Mutation_p.E119Q|PKP4_uc002tzx.2_5'UTR|PKP4_uc002tzy.1_5'UTR|PKP4_uc002tzz.1_Missense_Mutation_p.E119Q|PKP4_uc002uaa.2_5'UTR	NM_003628	NP_003619
MUC4	4585	broad.mit.edu	37	3	195498270	195498270	+	Intron	SNP	G	A	A			2011-2326:2012-336-T	g.chr3:195498270G>A	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
YTHDC1	91746	broad.mit.edu	37	4	69202693	69202693	+	Intron	SNP	G	A	A			2011-2326:2012-336-T	g.chr4:69202693G>A	uc003hdx.2	-						YTHDC1_uc003hdy.2_Intron	NM_001031732	NP_001026902
FBXW7	55294	broad.mit.edu	37	4	153456102	153456102	+	5'UTR	SNP	A	G	G	rs1351903	by1000genomes	2011-2326:2012-336-T	g.chr4:153456102A>G	uc003ims.2	-	1					FBXW7_uc011cii.1_5'UTR|FBXW7_uc003imt.2_5'UTR|FBXW7_uc003imu.2_5'UTR|uc003imv.2_5'Flank	NM_033632	NP_361014
TAP1	6890	broad.mit.edu	37	6	32820471	32820471	+	Intron	SNP	A	T	T			2011-2326:2012-336-T	g.chr6:32820471A>T	uc003ocg.2	-						TAP1_uc011dqi.1_5'UTR|PSMB9_uc011dqj.1_5'Flank|PSMB9_uc003sga.2_5'Flank	NM_000593	NP_000584
PKHD1L1	93035	broad.mit.edu	37	8	110374459	110374459	+	5'Flank	SNP	G	A	A			2011-2326:2012-336-T	g.chr8:110374459G>A	uc003yne.2	+							NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113331251	113331251	+	Intron	SNP	G	T	T			2011-2326:2012-336-T	g.chr8:113331251G>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc003ynw.1_Intron	NM_198123	NP_937756
PPP2R3B	28227	broad.mit.edu	37	X	323960	323960	+	Intron	SNP	C	T	T			2011-2326:2012-336-T	g.chrX:323960C>T	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
PRDM16	63976	broad.mit.edu	37	1	3300470	3300470	+	Intron	SNP	C	T	T			2011-2327:2012-308-T	g.chr1:3300470C>T	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PDE4DIP	9659	broad.mit.edu	37	1	144867951	144867951	+	Missense_Mutation	SNP	A	T	T			2011-2327:2012-308-T	g.chr1:144867951A>T	uc001elw.3	-	33	5779	c.5488T>A	c.(5488-5490)TCT>ACT	p.S1830T	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.S1724T|PDE4DIP_uc001elv.3_Missense_Mutation_p.S837T|PDE4DIP_uc001ema.2_Missense_Mutation_p.S17T	NM_014644	NP_055459
FLG	2312	broad.mit.edu	37	1	152278679	152278679	+	Missense_Mutation	SNP	T	C	C			2011-2327:2012-308-T	g.chr1:152278679T>C	uc001ezu.1	-	3	8719	c.8683A>G	c.(8683-8685)AGT>GGT	p.S2895G		NM_002016	NP_002007
FLG	2312	broad.mit.edu	37	1	152279015	152279015	+	Missense_Mutation	SNP	G	T	T			2011-2327:2012-308-T	g.chr1:152279015G>T	uc001ezu.1	-	3	8383	c.8347C>A	c.(8347-8349)CAG>AAG	p.Q2783K		NM_002016	NP_002007
SMYD3	64754	broad.mit.edu	37	1	246137744	246137744	+	Intron	SNP	C	A	A			2011-2327:2012-308-T	g.chr1:246137744C>A	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
CUBN	8029	broad.mit.edu	37	10	16967704	16967704	+	Missense_Mutation	SNP	G	A	A	rs146692241		2011-2327:2012-308-T	g.chr10:16967704G>A	uc001ioo.2	-	42	6393	c.6341C>T	c.(6340-6342)TCC>TTC	p.S2114F		NM_001081	NP_001072
LHPP	64077	broad.mit.edu	37	10	126196246	126196246	+	Intron	SNP	A	G	G			2011-2327:2012-308-T	g.chr10:126196246A>G	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron	NM_022126	NP_071409
LRRK2	120892	broad.mit.edu	37	12	40689222	40689222	+	Intron	SNP	A	T	T			2011-2327:2012-308-T	g.chr12:40689222A>T	uc001rmg.3	+						LRRK2_uc001rmh.1_Intron|LRRK2_uc009zjw.2_5'Flank	NM_198578	NP_940980
TMEM132D	121256	broad.mit.edu	37	12	129559029	129559029	+	Missense_Mutation	SNP	G	T	T			2011-2327:2012-308-T	g.chr12:129559029G>T	uc009zyl.1	-	9	3019	c.2691C>A	c.(2689-2691)AGC>AGA	p.S897R	TMEM132D_uc001uia.2_Missense_Mutation_p.S435R	NM_133448	NP_597705
TMEM132D	121256	broad.mit.edu	37	12	130232169	130232169	+	Intron	SNP	A	G	G			2011-2327:2012-308-T	g.chr12:130232169A>G	uc009zyl.1	-							NM_133448	NP_597705
SYNE2	23224	broad.mit.edu	37	14	64629007	64629007	+	Intron	SNP	C	T	T			2011-2327:2012-308-T	g.chr14:64629007C>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc001xgp.2_Missense_Mutation_p.P167S|SYNE2_uc010aqa.2_Intron	NM_015180	NP_055995
LMF1	64788	broad.mit.edu	37	16	1000709	1000709	+	Intron	SNP	T	C	C			2011-2327:2012-308-T	g.chr16:1000709T>C	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
CORO7	79585	broad.mit.edu	37	16	4394498	4394498	+	Intron	SNP	T	C	C			2011-2327:2012-308-T	g.chr16:4394498T>C	uc002cwf.2	-						CORO7_uc002cwe.2_Intron|TIMM16_uc002cwd.2_Intron	NM_024535	NP_078811
FANCA	2175	broad.mit.edu	37	16	89846440	89846440	+	Intron	SNP	T	A	A			2011-2327:2012-308-T	g.chr16:89846440T>A	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
TP53	7157	broad.mit.edu	37	17	7578175	7578175	+	Splice_Site	SNP	A	T	T			2011-2327:2012-308-T	g.chr17:7578175A>T	uc002gim.2	-	6	866	c.672_splice	c.e6+1	p.E224_splice	TP53_uc002gig.1_Splice_Site_p.E224_splice|TP53_uc002gih.2_Splice_Site_p.E224_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Splice_Site_p.E92_splice|TP53_uc010cng.1_Splice_Site_p.E92_splice|TP53_uc002gii.1_Splice_Site_p.E92_splice|TP53_uc010cnh.1_Splice_Site_p.E224_splice|TP53_uc010cni.1_Splice_Site_p.E224_splice|TP53_uc002gij.2_Splice_Site_p.E224_splice|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Splice_Site_p.E131_splice|TP53_uc002gio.2_Splice_Site_p.E92_splice|TP53_uc010vug.1_Missense_Mutation_p.V186D	NM_001126112	NP_001119584
MED16	10025	broad.mit.edu	37	19	879241	879241	+	Intron	SNP	T	C	C			2011-2327:2012-308-T	g.chr19:879241T>C	uc002lqd.1	-						MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Intron|MED16_uc002lqf.2_Intron|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Intron|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472
NOTCH3	4854	broad.mit.edu	37	19	15297872	15297872	+	Intron	SNP	T	C	C			2011-2327:2012-308-T	g.chr19:15297872T>C	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
ZNF571	51276	broad.mit.edu	37	19	38056057	38056057	+	Nonsense_Mutation	SNP	C	A	A			2011-2327:2012-308-T	g.chr19:38056057C>A	uc002ogt.2	-	4	1374	c.1273G>T	c.(1273-1275)GGA>TGA	p.G425*	uc002ogm.2_Intron|uc002ogn.2_Intron|ZNF540_uc002ogo.2_Intron|ZNF540_uc002ogp.2_Intron|ZNF540_uc002ogq.2_Intron|ZNF571_uc002ogr.1_Intron|uc002ogs.1_5'Flank|ZNF571_uc010efp.2_Nonsense_Mutation_p.G425*	NM_016536	NP_057620
ZNF534	147658	broad.mit.edu	37	19	52942380	52942380	+	Missense_Mutation	SNP	G	T	T			2011-2327:2012-308-T	g.chr19:52942380G>T	uc002pzk.2	+	4	1767	c.1706G>T	c.(1705-1707)GGC>GTC	p.G569V	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Missense_Mutation_p.G556V	NM_001143939	NP_001137411
ZNF544	27300	broad.mit.edu	37	19	58769924	58769924	+	Intron	SNP	G	C	C	rs72165178		2011-2327:2012-308-T	g.chr19:58769924G>C	uc010euo.2	+						ZNF544_uc010eun.1_Intron|ZNF544_uc010yhw.1_Intron|ZNF544_uc010yhx.1_Intron|ZNF544_uc010yhy.1_Intron|ZNF544_uc002qrt.3_Intron|ZNF544_uc002qru.3_Intron|uc002qrx.1_RNA	NM_014480	NP_055295
RMND5A	64795	broad.mit.edu	37	2	87623097	87623097	+	Intron	SNP	G	A	A	rs144435737		2011-2327:2012-308-T	g.chr2:87623097G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87633651	87633651	+	Intron	SNP	C	A	A			2011-2327:2012-308-T	g.chr2:87633651C>A	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141598662	141598662	+	Splice_Site	SNP	C	A	A			2011-2327:2012-308-T	g.chr2:141598662C>A	uc002tvj.1	-	30	5912	c.4940_splice	c.e30-1	p.D1647_splice		NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141739620	141739620	+	Intron	SNP	C	G	G			2011-2327:2012-308-T	g.chr2:141739620C>G	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179435703	179435703	+	Silent	SNP	A	G	G			2011-2327:2012-308-T	g.chr2:179435703A>G	uc010zfg.1	-	275	67676	c.67452T>C	c.(67450-67452)CGT>CGC	p.R22484R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.R16179R|TTN_uc010zfi.1_Silent_p.R16112R|TTN_uc010zfj.1_Silent_p.R15987R	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179583174	179583174	+	Missense_Mutation	SNP	G	A	A			2011-2327:2012-308-T	g.chr2:179583174G>A	uc010zfg.1	-	82	21151	c.20927C>T	c.(20926-20928)ACT>ATT	p.T6976I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.T3637I	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179610748	179610748	+	Missense_Mutation	SNP	C	G	G			2011-2327:2012-308-T	g.chr2:179610748C>G	uc002unb.2	-	46	16603	c.16379G>C	c.(16378-16380)GGA>GCA	p.G5460A	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870
PROKR2	128674	broad.mit.edu	37	20	5295056	5295056	+	5'Flank	SNP	G	A	A			2011-2327:2012-308-T	g.chr20:5295056G>A	uc010zqw.1	-						PROKR2_uc010zqx.1_5'UTR|PROKR2_uc010zqy.1_Intron|uc002wly.1_5'Flank	NM_144773	NP_658986
PAK7	57144	broad.mit.edu	37	20	9519933	9519933	+	3'UTR	SNP	C	T	T			2011-2327:2012-308-T	g.chr20:9519933C>T	uc002wnl.2	-	11					PAK7_uc002wnk.2_3'UTR|PAK7_uc002wnj.2_3'UTR|PAK7_uc010gby.1_3'UTR	NM_020341	NP_065074
C20orf26	26074	broad.mit.edu	37	20	20336950	20336950	+	Intron	SNP	G	T	T	rs73607409		2011-2327:2012-308-T	g.chr20:20336950G>T	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
CDH4	1002	broad.mit.edu	37	20	59981872	59981872	+	Intron	SNP	C	G	G			2011-2327:2012-308-T	g.chr20:59981872C>G	uc002ybn.1	+							NM_001794	NP_001785
EP300	2033	broad.mit.edu	37	22	41565564	41565564	+	Missense_Mutation	SNP	G	T	T			2011-2327:2012-308-T	g.chr22:41565564G>T	uc003azl.3	+	26	4625	c.4230G>T	c.(4228-4230)AGG>AGT	p.R1410S		NM_001429	NP_001420
FANCD2	2177	broad.mit.edu	37	3	10074717	10074717	+	Intron	SNP	G	T	T			2011-2327:2012-308-T	g.chr3:10074717G>T	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc003buv.2_Intron	NM_033084	NP_149075
MST1R	4486	broad.mit.edu	37	3	49940942	49940942	+	Missense_Mutation	SNP	T	G	G			2011-2327:2012-308-T	g.chr3:49940942T>G	uc003cxy.3	-	1	365	c.101A>C	c.(100-102)TAC>TCC	p.Y34S	MST1R_uc011bdd.1_Missense_Mutation_p.Y34S|MST1R_uc011bde.1_Missense_Mutation_p.Y34S|MST1R_uc011bdf.1_Missense_Mutation_p.Y34S|MST1R_uc011bdg.1_Missense_Mutation_p.Y34S	NM_002447	NP_002438
PIK3CA	5290	broad.mit.edu	37	3	178942530	178942530	+	Silent	SNP	G	C	C			2011-2327:2012-308-T	g.chr3:178942530G>C	uc003fjk.2	+	16	2494	c.2337G>C	c.(2335-2337)CTG>CTC	p.L779L		NM_006218	NP_006209
DNAH5	1767	broad.mit.edu	37	5	13777533	13777533	+	Intron	SNP	C	G	G			2011-2327:2012-308-T	g.chr5:13777533C>G	uc003jfd.2	-							NM_001369	NP_001360
FLT4	2324	broad.mit.edu	37	5	180041275	180041275	+	Intron	SNP	G	A	A	rs57233361		2011-2327:2012-308-T	g.chr5:180041275G>A	uc003mma.3	-						FLT4_uc003mlz.3_Intron	NM_002020	NP_002011
SYNE1	23345	broad.mit.edu	37	6	152784472	152784472	+	Intron	SNP	G	T	T			2011-2327:2012-308-T	g.chr6:152784472G>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
MAD1L1	8379	broad.mit.edu	37	7	2116543	2116543	+	Intron	SNP	G	A	A			2011-2327:2012-308-T	g.chr7:2116543G>A	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
PCLO	27445	broad.mit.edu	37	7	82389945	82389945	+	Intron	SNP	A	G	G			2011-2327:2012-308-T	g.chr7:82389945A>G	uc003uhx.2	-							NM_033026	NP_149015
RELN	5649	broad.mit.edu	37	7	103185675	103185675	+	Missense_Mutation	SNP	C	T	T			2011-2327:2012-308-T	g.chr7:103185675C>T	uc003vca.2	-	42	6579	c.6419G>A	c.(6418-6420)GGG>GAG	p.G2140E	RELN_uc010liz.2_Missense_Mutation_p.G2140E	NM_005045	NP_005036
PIK3CG	5294	broad.mit.edu	37	7	106523506	106523506	+	Silent	SNP	G	T	T			2011-2327:2012-308-T	g.chr7:106523506G>T	uc003vdv.3	+	8	2743	c.2658G>T	c.(2656-2658)ACG>ACT	p.T886T	PIK3CG_uc003vdu.2_Silent_p.T886T|PIK3CG_uc003vdw.2_Silent_p.T886T	NM_002649	NP_002640
CHRM2	1129	broad.mit.edu	37	7	136658007	136658007	+	Intron	SNP	T	C	C			2011-2327:2012-308-T	g.chr7:136658007T>C	uc003vtf.1	+						CHRM2_uc003vtg.1_Intron|CHRM2_uc003vtj.1_Intron|CHRM2_uc003vtk.1_Intron|CHRM2_uc003vtl.1_Intron|CHRM2_uc003vtm.1_Intron|CHRM2_uc003vti.1_Intron|CHRM2_uc003vto.1_Intron|CHRM2_uc003vtn.1_Intron|uc003vtp.1_Intron	NM_001006630	NP_001006631
CNTNAP2	26047	broad.mit.edu	37	7	147183074	147183074	+	Nonsense_Mutation	SNP	G	A	A			2011-2327:2012-308-T	g.chr7:147183074G>A	uc003weu.1	+	11	2234	c.1718G>A	c.(1717-1719)TGG>TAG	p.W573*		NM_014141	NP_054860
CNTNAP2	26047	broad.mit.edu	37	7	147600763	147600763	+	Missense_Mutation	SNP	C	A	A			2011-2327:2012-308-T	g.chr7:147600763C>A	uc003weu.1	+	14	2721	c.2205C>A	c.(2203-2205)AAC>AAA	p.N735K		NM_014141	NP_054860
PTPRN2	5799	broad.mit.edu	37	7	157509362	157509362	+	Intron	SNP	A	T	T			2011-2327:2012-308-T	g.chr7:157509362A>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
CSMD3	114788	broad.mit.edu	37	8	113420573	113420573	+	Missense_Mutation	SNP	G	A	A			2011-2327:2012-308-T	g.chr8:113420573G>A	uc003ynu.2	-	34	5738	c.5579C>T	c.(5578-5580)GCT>GTT	p.A1860V	CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Missense_Mutation_p.A1820V|CSMD3_uc011lhx.1_Missense_Mutation_p.A1756V	NM_198123	NP_937756
FAM135B	51059	broad.mit.edu	37	8	139263183	139263183	+	Missense_Mutation	SNP	A	T	T			2011-2327:2012-308-T	g.chr8:139263183A>T	uc003yuy.2	-	6	614	c.443T>A	c.(442-444)CTG>CAG	p.L148Q	FAM135B_uc003yux.2_Missense_Mutation_p.L49Q|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996
ARHGAP39	80728	broad.mit.edu	37	8	145787688	145787688	+	Intron	SNP	G	A	A			2011-2327:2012-308-T	g.chr8:145787688G>A	uc003zdt.1	-						ARHGAP39_uc011llk.1_Intron|ARHGAP39_uc003zds.1_Intron	NM_025251	NP_079527
CDKN2A	1029	broad.mit.edu	37	9	21971153	21971154	+	Nonsense_Mutation	DNP	CC	AA	AA	rs121913383		2011-2327:2012-308-T	g.chr9:21971153_21971154CC>AA	uc003zpk.2	-	2	416_417	c.204_205GG>TT	c.(202-207)GCGGAG>GCTTAG	p.E69*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.G124L	NM_000077	NP_000068
GOLGA1	2800	broad.mit.edu	37	9	127657380	127657380	+	Intron	SNP	A	C	C			2011-2327:2012-308-T	g.chr9:127657380A>C	uc004bpc.2	-						GOLGA1_uc010mws.2_Intron	NM_002077	NP_002068
TSC1	7248	broad.mit.edu	37	9	135787534	135787534	+	Intron	SNP	C	A	A			2011-2327:2012-308-T	g.chr9:135787534C>A	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron|TSC1_uc011mcs.1_Intron|TSC1_uc004ccc.1_Intron|TSC1_uc004ccd.2_Intron|TSC1_uc004cce.1_Intron	NM_000368	NP_000359
CAMSAP1	157922	broad.mit.edu	37	9	138728096	138728096	+	Intron	SNP	C	T	T			2011-2327:2012-308-T	g.chr9:138728096C>T	uc004cgr.3	-						CAMSAP1_uc004cgq.3_Intron|CAMSAP1_uc010nbg.2_Intron	NM_015447	NP_056262
EHMT1	79813	broad.mit.edu	37	9	140617535	140617535	+	Intron	SNP	T	C	C			2011-2327:2012-308-T	g.chr9:140617535T>C	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
CELF2	10659	broad.mit.edu	37	10	11326139	11326139	+	Intron	SNP	A	G	G			2011-2328:2012-1336-T	g.chr10:11326139A>G	uc001iki.3	+						CELF2_uc010qbi.1_Intron|CELF2_uc010qbj.1_Intron|CELF2_uc001ikk.2_Intron|CELF2_uc001ikl.3_Intron|CELF2_uc010qbk.1_Intron|CELF2_uc010qbl.1_Intron|CELF2_uc010qbm.1_Intron|CELF2_uc001iko.3_Intron|CELF2_uc001ikp.3_Intron|CELF2_uc010qbn.1_Intron|CELF2_uc010qbo.1_Intron|CELF2_uc010qbp.1_Intron	NM_001025077	NP_001020248
ANXA8	653145	broad.mit.edu	37	10	47059111	47059111	+	Intron	SNP	A	T	T			2011-2328:2012-1336-T	g.chr10:47059111A>T	uc001jed.3	-								
ANXA8	653145	broad.mit.edu	37	10	47059148	47059148	+	Intron	SNP	A	G	G			2011-2328:2012-1336-T	g.chr10:47059148A>G	uc001jed.3	-								
COL4A2	1284	broad.mit.edu	37	13	111007778	111007778	+	Intron	SNP	T	C	C			2011-2328:2012-1336-T	g.chr13:111007778T>C	uc001vqx.2	+							NM_001846	NP_001837
STAT3	6774	broad.mit.edu	37	17	40490019	40490019	+	Intron	SNP	T	G	G	rs71367911		2011-2328:2012-1336-T	g.chr17:40490019T>G	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
MUC4	4585	broad.mit.edu	37	3	195502759	195502759	+	Intron	SNP	A	G	G			2011-2328:2012-1336-T	g.chr3:195502759A>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
GPR174	84636	broad.mit.edu	37	X	78426380	78426380	+	5'Flank	SNP	G	A	A	rs41307268	by1000genomes	2011-2328:2012-1336-T	g.chrX:78426380G>A	uc004edg.1	+							NM_032553	NP_115942
MACF1	23499	broad.mit.edu	37	1	39851427	39851427	+	Missense_Mutation	SNP	G	A	A	rs145533329		2011-2329:2012-1318-T	g.chr1:39851427G>A	uc010oiu.1	+	21	9621	c.9490G>A	c.(9490-9492)GAA>AAA	p.E3164K	MACF1_uc010ois.1_Missense_Mutation_p.E2662K|MACF1_uc001cda.1_Missense_Mutation_p.E2549K|MACF1_uc001cdc.1_Missense_Mutation_p.E1728K	NM_033044	NP_149033
PDE4DIP	9659	broad.mit.edu	37	1	145039866	145039866	+	5'UTR	SNP	A	G	G	rs1445033		2011-2329:2012-1318-T	g.chr1:145039866A>G	uc001elx.3	-	1					NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_5'UTR|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
BCL9	607	broad.mit.edu	37	1	147091693	147091693	+	Missense_Mutation	SNP	G	A	A			2011-2329:2012-1318-T	g.chr1:147091693G>A	uc001epq.2	+	8	2472	c.1732G>A	c.(1732-1734)GTC>ATC	p.V578I	BCL9_uc010ozr.1_Missense_Mutation_p.V504I	NM_004326	NP_004317
ASH1L	55870	broad.mit.edu	37	1	155319182	155319182	+	Missense_Mutation	SNP	G	C	C			2011-2329:2012-1318-T	g.chr1:155319182G>C	uc009wqq.2	-	19	7985	c.7505C>G	c.(7504-7506)ACT>AGT	p.T2502S	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.T2497S|MIR555_hsa-mir-555|MI0003561_5'Flank	NM_018489	NP_060959
SPTA1	6708	broad.mit.edu	37	1	158582543	158582543	+	Intron	SNP	G	A	A	rs2251963	by1000genomes	2011-2329:2012-1318-T	g.chr1:158582543G>A	uc001fst.1	-							NM_003126	NP_003117
SPTA1	6708	broad.mit.edu	37	1	158582552	158582552	+	Intron	SNP	G	A	A	rs2251964	by1000genomes	2011-2329:2012-1318-T	g.chr1:158582552G>A	uc001fst.1	-							NM_003126	NP_003117
IRF6	3664	broad.mit.edu	37	1	209979613	209979613	+	5'Flank	SNP	C	G	G	rs7545538	by1000genomes	2011-2329:2012-1318-T	g.chr1:209979613C>G	uc001hhq.1	-						IRF6_uc010psm.1_5'Flank|IRF6_uc009xct.1_5'Flank	NM_006147	NP_006138
ADAM12	8038	broad.mit.edu	37	10	127727768	127727768	+	Intron	SNP	A	G	G	rs1278255	by1000genomes	2011-2329:2012-1318-T	g.chr10:127727768A>G	uc001ljk.2	-						ADAM12_uc010qul.1_Intron	NM_003474	NP_003465
ADAM12	8038	broad.mit.edu	37	10	127727808	127727808	+	Intron	SNP	A	G	G	rs1278256	by1000genomes	2011-2329:2012-1318-T	g.chr10:127727808A>G	uc001ljk.2	-						ADAM12_uc010qul.1_Intron	NM_003474	NP_003465
GPR123	84435	broad.mit.edu	37	10	134922413	134922413	+	Intron	SNP	T	C	C	rs12781563	by1000genomes	2011-2329:2012-1318-T	g.chr10:134922413T>C	uc001llx.3	+						GPR123_uc001llw.2_Intron	NM_001083909	NP_001077378
MUC5B	727897	broad.mit.edu	37	11	1141787	1141787	+	5'Flank	SNP	G	A	A			2011-2329:2012-1318-T	g.chr11:1141787G>A	uc009ycr.1	+							NM_017511	NP_059981
ATM	472	broad.mit.edu	37	11	108225483	108225483	+	Intron	SNP	C	T	T	rs664982	byFrequency;by1000genomes	2011-2329:2012-1318-T	g.chr11:108225483C>T	uc001pkb.1	+						ATM_uc009yxr.1_Intron|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Intron	NM_000051	NP_000042
TSPAN9	10867	broad.mit.edu	37	12	3307045	3307045	+	Intron	SNP	T	C	C	rs146495500	by1000genomes	2011-2329:2012-1318-T	g.chr12:3307045T>C	uc001qlp.2	+							NM_006675	NP_006666
PDE3A	5139	broad.mit.edu	37	12	20792835	20792835	+	Missense_Mutation	SNP	T	G	G			2011-2329:2012-1318-T	g.chr12:20792835T>G	uc001reh.1	+	10	2217	c.2195T>G	c.(2194-2196)ATT>AGT	p.I732S		NM_000921	NP_000912
RARG	5916	broad.mit.edu	37	12	53614349	53614349	+	Intron	SNP	T	C	C	rs941138	by1000genomes	2011-2329:2012-1318-T	g.chr12:53614349T>C	uc001sce.2	-						RARG_uc001scd.2_5'Flank|RARG_uc010sob.1_5'Flank|RARG_uc001scf.2_Intron|RARG_uc001scg.2_Intron|RARG_uc010soc.1_Intron|RARG_uc010sod.1_5'Flank	NM_000966	NP_000957
SYT1	6857	broad.mit.edu	37	12	79701964	79701964	+	Intron	SNP	A	G	G	rs11113612	by1000genomes	2011-2329:2012-1318-T	g.chr12:79701964A>G	uc001sys.2	+						SYT1_uc001syt.2_Intron|SYT1_uc001syu.2_Intron|SYT1_uc001syv.2_Intron	NM_001135805	NP_001129277
RB1	5925	broad.mit.edu	37	13	48916895	48916895	+	Intron	SNP	C	T	T	rs520342	by1000genomes	2011-2329:2012-1318-T	g.chr13:48916895C>T	uc001vcb.2	+						RB1_uc010acs.1_Intron	NM_000321	NP_000312
NRXN3	9369	broad.mit.edu	37	14	79432805	79432805	+	Intron	SNP	C	T	T	rs11851757	by1000genomes	2011-2329:2012-1318-T	g.chr14:79432805C>T	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc010asv.1_Intron	NM_004796	NP_004787
JAG2	3714	broad.mit.edu	37	14	105629947	105629947	+	Intron	SNP	C	T	T	rs3784239	by1000genomes	2011-2329:2012-1318-T	g.chr14:105629947C>T	uc001yqg.2	-						JAG2_uc001yqh.2_Intron	NM_002226	NP_002217
PACS2	23241	broad.mit.edu	37	14	105845612	105845612	+	Intron	SNP	C	T	T	rs140753042	by1000genomes	2011-2329:2012-1318-T	g.chr14:105845612C>T	uc001yqt.2	+						PACS2_uc001yqs.2_Intron|PACS2_uc001yqv.2_Intron|PACS2_uc001yqu.2_Intron	NM_015197	NP_056012
TRAF7	84231	broad.mit.edu	37	16	2214698	2214698	+	Intron	SNP	G	A	A			2011-2329:2012-1318-T	g.chr16:2214698G>A	uc002cow.2	+							NM_032271	NP_115647
ABAT	18	broad.mit.edu	37	16	8873493	8873493	+	Intron	SNP	C	T	T	rs1079349	by1000genomes	2011-2329:2012-1318-T	g.chr16:8873493C>T	uc002czc.3	+						ABAT_uc002czd.3_Intron|ABAT_uc010buh.2_Intron|ABAT_uc010bui.2_Intron	NM_020686	NP_065737
KLHDC4	54758	broad.mit.edu	37	16	87773109	87773109	+	Intron	SNP	C	G	G			2011-2329:2012-1318-T	g.chr16:87773109C>G	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
FANCA	2175	broad.mit.edu	37	16	89831510	89831510	+	Intron	SNP	C	A	A	rs2159116	byFrequency;by1000genomes	2011-2329:2012-1318-T	g.chr16:89831510C>A	uc002fou.1	-						FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_5'Flank	NM_000135	NP_000126
RPTOR	57521	broad.mit.edu	37	17	78814482	78814482	+	Intron	SNP	G	A	A			2011-2329:2012-1318-T	g.chr17:78814482G>A	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
KIAA1468	57614	broad.mit.edu	37	18	59928721	59928721	+	Intron	SNP	G	A	A	rs77208629	by1000genomes	2011-2329:2012-1318-T	g.chr18:59928721G>A	uc002lil.2	+						KIAA1468_uc002lik.1_Intron|KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
ZNF799	90576	broad.mit.edu	37	19	12491639	12491639	+	Missense_Mutation	SNP	A	G	G	rs59301182	by1000genomes	2011-2329:2012-1318-T	g.chr19:12491639A>G	uc002mts.3	-	4	903	c.437T>C	c.(436-438)CTG>CCG	p.L146P			
ZNF799	90576	broad.mit.edu	37	19	12491654	12491654	+	Missense_Mutation	SNP	C	T	T	rs57371898	by1000genomes	2011-2329:2012-1318-T	g.chr19:12491654C>T	uc002mts.3	-	4	888	c.422G>A	c.(421-423)CGT>CAT	p.R141H			
ZNF799	90576	broad.mit.edu	37	19	12491779	12491779	+	Silent	SNP	T	C	C	rs17706075	by1000genomes	2011-2329:2012-1318-T	g.chr19:12491779T>C	uc002mts.3	-	4	763	c.297A>G	c.(295-297)GCA>GCG	p.A99A			
UNC13A	23025	broad.mit.edu	37	19	17783689	17783689	+	Intron	SNP	C	T	T	rs117247008	by1000genomes	2011-2329:2012-1318-T	g.chr19:17783689C>T	uc002nhd.2	-							NM_001080421	NP_001073890
JAK3	3718	broad.mit.edu	37	19	17952609	17952609	+	Intron	SNP	T	G	G	rs3212730	by1000genomes	2011-2329:2012-1318-T	g.chr19:17952609T>G	uc002nhn.3	-						JAK3_uc010ebh.2_Intron|JAK3_uc002nho.2_Intron|JAK3_uc010xpx.1_Intron	NM_000215	NP_000206
AXL	558	broad.mit.edu	37	19	41765407	41765407	+	Intron	SNP	A	C	C	rs4591267	by1000genomes	2011-2329:2012-1318-T	g.chr19:41765407A>C	uc010ehj.2	+						CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_5'Flank|HNRNPUL1_uc002oqa.3_5'Flank|AXL_uc010ehk.2_Intron	NM_021913	NP_068713
RMND5A	64795	broad.mit.edu	37	2	87013197	87013197	+	Intron	SNP	G	A	A	rs138190740	by1000genomes	2011-2329:2012-1318-T	g.chr2:87013197G>A	uc002srs.3	+						CD8A_uc002srv.2_Intron|CD8A_uc010ytn.1_Intron|CD8A_uc002srt.2_Intron|CD8A_uc002sru.2_Intron		
RMND5A	64795	broad.mit.edu	37	2	87626059	87626059	+	Intron	SNP	G	A	A	rs6742376	by1000genomes	2011-2329:2012-1318-T	g.chr2:87626059G>A	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141751461	141751461	+	Intron	SNP	C	T	T	rs11678316	by1000genomes	2011-2329:2012-1318-T	g.chr2:141751461C>T	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179411665	179411665	+	Intron	SNP	A	G	G	rs2288327	by1000genomes	2011-2329:2012-1318-T	g.chr2:179411665A>G	uc010zfg.1	-						uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
STAT1	6772	broad.mit.edu	37	2	191878801	191878801	+	5'UTR	SNP	G	A	A	rs147950001	by1000genomes	2011-2329:2012-1318-T	g.chr2:191878801G>A	uc002usj.2	-	1					STAT1_uc010fse.1_5'Flank|STAT1_uc002usk.2_5'UTR|STAT1_uc002usl.2_5'UTR|STAT1_uc010fsf.1_5'UTR	NM_007315	NP_009330
MYT1	4661	broad.mit.edu	37	20	62833460	62833460	+	Intron	SNP	A	G	G	rs3003139	by1000genomes	2011-2329:2012-1318-T	g.chr20:62833460A>G	uc002yii.2	+						MYT1_uc002yih.2_Intron	NM_004535	NP_004526
CIDEC	63924	broad.mit.edu	37	3	10035896	10035896	+	Intron	SNP	A	T	T	rs7615088	by1000genomes	2011-2329:2012-1318-T	g.chr3:10035896A>T	uc003bto.2	-						uc003bup.1_Intron|uc003buq.1_Intron		
FANCD2	2177	broad.mit.edu	37	3	10119603	10119603	+	Intron	SNP	C	A	A	rs6792951	by1000genomes	2011-2329:2012-1318-T	g.chr3:10119603C>A	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10119917	10119917	+	Intron	SNP	T	C	C	rs6805869	by1000genomes	2011-2329:2012-1318-T	g.chr3:10119917T>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron	NM_033084	NP_149075
DPPA4	55211	broad.mit.edu	37	3	109056751	109056751	+	5'Flank	SNP	C	A	A	rs1163447	by1000genomes	2011-2329:2012-1318-T	g.chr3:109056751C>A	uc003dxq.3	-						DPPA4_uc011bho.1_5'Flank|DPPA4_uc011bhp.1_5'Flank	NM_018189	NP_060659
TP63	8626	broad.mit.edu	37	3	189587091	189587091	+	Intron	SNP	A	G	G	rs6789961	byFrequency;by1000genomes	2011-2329:2012-1318-T	g.chr3:189587091A>G	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
MSH3	4437	broad.mit.edu	37	5	79952390	79952390	+	Intron	SNP	T	C	C	rs1643639	by1000genomes	2011-2329:2012-1318-T	g.chr5:79952390T>C	uc003kgz.2	+						DHFR_uc011ctl.1_5'Flank|DHFR_uc011ctm.1_5'Flank|DHFR_uc010jap.1_5'Flank|DHFR_uc003kgx.1_5'Flank|DHFR_uc003kgy.1_5'Flank	NM_002439	NP_002430
HMP19	51617	broad.mit.edu	37	5	173495603	173495603	+	Intron	SNP	T	C	C	rs72814776	by1000genomes	2011-2329:2012-1318-T	g.chr5:173495603T>C	uc003mcx.2	+							NM_015980	NP_057064
NSD1	64324	broad.mit.edu	37	5	176720766	176720766	+	Intron	SNP	A	G	G	rs6872201	by1000genomes	2011-2329:2012-1318-T	g.chr5:176720766A>G	uc003mfr.3	+						NSD1_uc003mft.3_Intron|NSD1_uc011dfx.1_Intron	NM_022455	NP_071900
RUFY1	80230	broad.mit.edu	37	5	179021982	179021982	+	Intron	SNP	G	A	A	rs28685239	by1000genomes	2011-2329:2012-1318-T	g.chr5:179021982G>A	uc003mka.1	+						RUFY1_uc003mkb.1_Intron|RUFY1_uc003mkc.1_Intron|RUFY1_uc003mkd.1_Intron	NM_025158	NP_079434
POU5F1	5460	broad.mit.edu	37	6	31134625	31134625	+	Intron	SNP	A	G	G	rs115370696	byFrequency;by1000genomes	2011-2329:2012-1318-T	g.chr6:31134625A>G	uc003nsv.2	-						POU5F1_uc003nsu.2_5'Flank	NM_002701	NP_002692
HLA-B	3106	broad.mit.edu	37	6	31241116	31241116	+	Intron	SNP	C	T	T	rs28367582		2011-2329:2012-1318-T	g.chr6:31241116C>T	uc003ntf.2	-						HLA-C_uc011dnj.1_5'Flank|HLA-C_uc003nsx.2_5'Flank|HLA-C_uc003nsy.2_5'Flank|HLA-C_uc003nsz.2_5'Flank|HLA-C_uc010jsl.2_5'Flank|HLA-C_uc003nta.2_5'Flank|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_5'Flank		
TAP2	6891	broad.mit.edu	37	6	32797684	32797684	+	Intron	SNP	A	G	G	rs241437	by1000genomes	2011-2329:2012-1318-T	g.chr6:32797684A>G	uc003occ.2	-						TAP2_uc011dqf.1_Intron|TAP2_uc003ocb.1_Intron|TAP2_uc003ocd.2_Intron	NM_018833	NP_061313
LIMK1	3984	broad.mit.edu	37	7	73507090	73507090	+	Intron	SNP	G	C	C			2011-2329:2012-1318-T	g.chr7:73507090G>C	uc003uaa.1	+						RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_Intron|LIMK1_uc003uab.2_5'Flank	NM_002314	NP_002305
FAM135B	51059	broad.mit.edu	37	8	139190957	139190957	+	Intron	SNP	T	G	G	rs4909747	by1000genomes	2011-2329:2012-1318-T	g.chr8:139190957T>G	uc003yuy.2	-						FAM135B_uc003yux.2_Intron|FAM135B_uc003yuz.2_Intron	NM_015912	NP_056996
NOTCH1	4851	broad.mit.edu	37	9	139393342	139393342	+	Intron	SNP	C	T	T			2011-2329:2012-1318-T	g.chr9:139393342C>T	uc004chz.2	-							NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139397707	139397707	+	Silent	SNP	G	A	A	rs10521	by1000genomes	2011-2329:2012-1318-T	g.chr9:139397707G>A	uc004chz.2	-	27	5094	c.5094C>T	c.(5092-5094)GAC>GAT	p.D1698D	NOTCH1_uc004cia.1_Silent_p.D928D	NM_017617	NP_060087
RGAG1	57529	broad.mit.edu	37	X	109693800	109693800	+	5'UTR	SNP	C	T	T			2011-2329:2012-1318-T	g.chrX:109693800C>T	uc004eor.1	+	3					RGAG1_uc011msr.1_5'UTR	NM_020769	NP_065820
PDE1B	5153	broad.mit.edu	37	12	54955461	54955461	+	Intron	SNP	A	G	G	rs9668037	by1000genomes	2011-2330:2012-1337-T	g.chr12:54955461A>G	uc001sgd.1	+						PDE1B_uc010soz.1_Intron|PDE1B_uc010spa.1_Intron|PDE1B_uc001sgf.2_Intron|PDE1B_uc001sge.2_Intron|PDE1B_uc009znq.2_Intron	NM_000924	NP_000915
VPS41	27072	broad.mit.edu	37	7	38782951	38782951	+	Intron	SNP	G	A	A	rs10254567	by1000genomes	2011-2330:2012-1337-T	g.chr7:38782951G>A	uc003tgy.2	-						VPS41_uc003tgz.2_Intron|VPS41_uc010kxn.2_Intron|VPS41_uc003tgx.2_Intron	NM_014396	NP_055211
EXOC4	60412	broad.mit.edu	37	7	133580545	133580545	+	Intron	SNP	A	G	G	rs2042455	by1000genomes	2011-2330:2012-1337-T	g.chr7:133580545A>G	uc003vrk.2	+						EXOC4_uc011kpo.1_Intron|EXOC4_uc003vrl.2_Intron|EXOC4_uc011kpp.1_Intron	NM_021807	NP_068579
PANK4	55229	broad.mit.edu	37	1	2442953	2442953	+	Intron	SNP	C	A	A	rs2236397	by1000genomes	2011-2331:2012-1338-T	g.chr1:2442953C>A	uc001ajm.1	-						PANK4_uc010nza.1_Intron	NM_018216	NP_060686
SPTA1	6708	broad.mit.edu	37	1	158582838	158582838	+	Intron	SNP	G	C	C	rs2157691	by1000genomes	2011-2331:2012-1338-T	g.chr1:158582838G>C	uc001fst.1	-							NM_003126	NP_003117
MDM4	4194	broad.mit.edu	37	1	204515863	204515863	+	Intron	SNP	C	T	T	rs2290855	by1000genomes	2011-2331:2012-1338-T	g.chr1:204515863C>T	uc001hba.2	+						MDM4_uc001hbd.1_Intron|MDM4_uc010pqw.1_Intron|MDM4_uc010pqx.1_Intron|MDM4_uc001hay.1_Intron|MDM4_uc001hbb.2_Intron|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_Intron|MDM4_uc009xbe.1_Intron	NM_002393	NP_002384
PARP1	142	broad.mit.edu	37	1	226550741	226550741	+	Intron	SNP	C	T	T	rs747659	byFrequency;by1000genomes	2011-2331:2012-1338-T	g.chr1:226550741C>T	uc001hqd.3	-							NM_001618	NP_001609
RET	5979	broad.mit.edu	37	10	43612233	43612233	+	Intron	SNP	C	A	A			2011-2331:2012-1338-T	g.chr10:43612233C>A	uc001jal.2	+						RET_uc001jak.1_Intron|RET_uc010qez.1_Intron	NM_020975	NP_066124
TPCN2	219931	broad.mit.edu	37	11	68832505	68832505	+	Intron	SNP	G	A	A	rs10792016	by1000genomes	2011-2331:2012-1338-T	g.chr11:68832505G>A	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
TPCN2	219931	broad.mit.edu	37	11	68843990	68843990	+	Intron	SNP	G	A	A	rs35306535	by1000genomes	2011-2331:2012-1338-T	g.chr11:68843990G>A	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_Intron	NM_139075	NP_620714
CACNA1C	775	broad.mit.edu	37	12	2220061	2220061	+	Intron	SNP	G	C	C	rs2238031	by1000genomes	2011-2331:2012-1338-T	g.chr12:2220061G>C	uc009zdu.1	+						CACNA1C_uc009zdv.1_Intron|CACNA1C_uc001qkb.2_Intron|CACNA1C_uc001qkc.2_Intron|CACNA1C_uc001qke.2_Intron|CACNA1C_uc001qkf.2_Intron|CACNA1C_uc001qjz.2_Intron|CACNA1C_uc001qkd.2_Intron|CACNA1C_uc001qkg.2_Intron|CACNA1C_uc009zdw.1_Intron|CACNA1C_uc001qkh.2_Intron|CACNA1C_uc001qkl.2_Intron|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Intron|CACNA1C_uc001qkp.2_Intron|CACNA1C_uc001qkr.2_Intron|CACNA1C_uc001qku.2_Intron|CACNA1C_uc001qkq.2_Intron|CACNA1C_uc001qks.2_Intron|CACNA1C_uc001qkt.2_Intron	NM_199460	NP_955630
PIK3C2G	5288	broad.mit.edu	37	12	18414253	18414253	+	5'Flank	SNP	C	A	A	rs10770343	by1000genomes	2011-2331:2012-1338-T	g.chr12:18414253C>A	uc001rdt.2	+						PIK3C2G_uc010sia.1_5'Flank	NM_004570	NP_004561
BCL7A	605	broad.mit.edu	37	12	122468756	122468756	+	Intron	SNP	A	G	G	rs59397548	by1000genomes	2011-2331:2012-1338-T	g.chr12:122468756A>G	uc001ubp.2	+						BCL7A_uc001ubo.2_Intron	NM_001024808	NP_001019979
CDH13	1012	broad.mit.edu	37	16	83692591	83692591	+	Intron	SNP	C	A	A	rs62045344		2011-2331:2012-1338-T	g.chr16:83692591C>A	uc002fgx.2	+						CDH13_uc010vns.1_Intron|CDH13_uc010vnt.1_Intron|CDH13_uc010vnu.1_Intron	NM_001257	NP_001248
CPNE7	27132	broad.mit.edu	37	16	89646023	89646023	+	Intron	SNP	C	T	T	rs34652781	by1000genomes	2011-2331:2012-1338-T	g.chr16:89646023C>T	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
TP53	7157	broad.mit.edu	37	17	7579310	7579310	+	Splice_Site	SNP	A	G	G			2011-2331:2012-1338-T	g.chr17:7579310A>G	uc002gim.2	-	4	569	c.375_splice	c.e4+1	p.T125_splice	TP53_uc002gig.1_Splice_Site_p.T125_splice|TP53_uc002gih.2_Splice_Site_p.T125_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Splice_Site_p.T125_splice|TP53_uc010cni.1_Splice_Site_p.T125_splice|TP53_uc002gij.2_Splice_Site_p.T125_splice|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Splice_Site_p.T86_splice	NM_001126112	NP_001119584
NF1	4763	broad.mit.edu	37	17	29496819	29496819	+	Intron	SNP	C	T	T	rs2905807	by1000genomes	2011-2331:2012-1338-T	g.chr17:29496819C>T	uc002hgg.2	+						NF1_uc002hge.1_Intron|NF1_uc002hgf.1_Intron|NF1_uc002hgh.2_Intron|NF1_uc010csn.1_Intron	NM_001042492	NP_001035957
NF1	4763	broad.mit.edu	37	17	29546175	29546175	+	Intron	SNP	T	C	C	rs2905880	by1000genomes	2011-2331:2012-1338-T	g.chr17:29546175T>C	uc002hgg.2	+						NF1_uc002hge.1_3'UTR|NF1_uc002hgf.1_Intron|NF1_uc002hgh.2_Intron|NF1_uc010csn.1_Intron	NM_001042492	NP_001035957
NF1	4763	broad.mit.edu	37	17	29653293	29653293	+	Intron	SNP	T	C	C	rs9894648	by1000genomes	2011-2331:2012-1338-T	g.chr17:29653293T>C	uc002hgg.2	+						NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron|NF1_uc010cso.2_Intron	NM_001042492	NP_001035957
LAMA1	284217	broad.mit.edu	37	18	6995512	6995512	+	Intron	SNP	G	A	A	rs4798524	by1000genomes	2011-2331:2012-1338-T	g.chr18:6995512G>A	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
ZNF521	25925	broad.mit.edu	37	18	22804244	22804244	+	Intron	SNP	T	C	C	rs4129657	by1000genomes	2011-2331:2012-1338-T	g.chr18:22804244T>C	uc002kvk.2	-						ZNF521_uc010xbe.1_Intron|ZNF521_uc010dly.2_Intron|ZNF521_uc002kvl.2_Intron	NM_015461	NP_056276
PKP4	8502	broad.mit.edu	37	2	159522879	159522879	+	Intron	SNP	C	G	G	rs2248854	by1000genomes	2011-2331:2012-1338-T	g.chr2:159522879C>G	uc002tzv.2	+						PKP4_uc002tzu.2_Intron|PKP4_uc002tzw.2_Intron|PKP4_uc002tzx.2_Intron|PKP4_uc002uaa.2_Intron|uc002uab.1_Intron|PKP4_uc002uac.2_Intron|PKP4_uc002uad.2_5'Flank|PKP4_uc002uae.1_5'Flank	NM_003628	NP_003619
PPP1R16B	26051	broad.mit.edu	37	20	37547374	37547374	+	3'UTR	SNP	G	A	A	rs4812336	by1000genomes	2011-2331:2012-1338-T	g.chr20:37547374G>A	uc002xje.2	+	11					PPP1R16B_uc010ggc.2_3'UTR	NM_015568	NP_056383
CDH4	1002	broad.mit.edu	37	20	59981600	59981600	+	Intron	SNP	G	A	A	rs112801402	by1000genomes	2011-2331:2012-1338-T	g.chr20:59981600G>A	uc002ybn.1	+							NM_001794	NP_001785
RUNX1	861	broad.mit.edu	37	21	36421036	36421036	+	Intron	SNP	T	C	C	rs8133634	by1000genomes	2011-2331:2012-1338-T	g.chr21:36421036T>C	uc010gmu.2	-						RUNX1_uc002yut.1_Intron|RUNX1_uc010gmv.2_Intron|RUNX1_uc002yuj.3_Intron|RUNX1_uc002yuk.3_Intron|RUNX1_uc002yum.1_Intron|RUNX1_uc010gmw.1_Intron	NM_001754	NP_001745
TMPRSS2	7113	broad.mit.edu	37	21	42851006	42851006	+	Intron	SNP	A	G	G	rs9975014	by1000genomes	2011-2331:2012-1338-T	g.chr21:42851006A>G	uc002yzj.2	-						TMPRSS2_uc010gor.2_Intron|TMPRSS2_uc010gos.1_Intron	NM_005656	NP_005647
CNTN6	27255	broad.mit.edu	37	3	1337203	1337203	+	Intron	SNP	A	G	G	rs565499	by1000genomes	2011-2331:2012-1338-T	g.chr3:1337203A>G	uc003boz.2	+						CNTN6_uc010hbo.2_Intron|CNTN6_uc011asj.1_Intron|CNTN6_uc003bpa.2_Intron	NM_014461	NP_055276
SLC6A3	6531	broad.mit.edu	37	5	1423470	1423470	+	Intron	SNP	C	T	T	rs380689		2011-2331:2012-1338-T	g.chr5:1423470C>T	uc003jck.2	-							NM_001044	NP_001035
ADAMTS12	81792	broad.mit.edu	37	5	33631100	33631100	+	Intron	SNP	C	T	T	rs112524145	by1000genomes	2011-2331:2012-1338-T	g.chr5:33631100C>T	uc003jia.1	-						ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217
SLCO4C1	353189	broad.mit.edu	37	5	101632467	101632467	+	5'Flank	SNP	G	T	T	rs10039511	by1000genomes	2011-2331:2012-1338-T	g.chr5:101632467G>T	uc003knm.2	-							NM_180991	NP_851322
RUFY1	80230	broad.mit.edu	37	5	178986261	178986261	+	Intron	SNP	C	G	G	rs6601050	by1000genomes	2011-2331:2012-1338-T	g.chr5:178986261C>G	uc003mka.1	+						RUFY1_uc003mkb.1_5'Flank|RUFY1_uc003mkc.1_5'Flank	NM_025158	NP_079434
BBS9	27241	broad.mit.edu	37	7	33186065	33186065	+	Intron	SNP	T	G	G	rs77462109	byFrequency;by1000genomes	2011-2331:2012-1338-T	g.chr7:33186065T>G	uc003tdn.1	+						BBS9_uc003tdo.1_Intron|BBS9_uc003tdp.1_Intron|BBS9_uc003tdq.1_Intron|BBS9_uc010kwn.1_Intron|BBS9_uc011kan.1_Intron	NM_198428	NP_940820
LAMB1	3912	broad.mit.edu	37	7	107643977	107643977	+	5'Flank	SNP	C	T	T	rs4320486	by1000genomes	2011-2331:2012-1338-T	g.chr7:107643977C>T	uc003vew.2	-						LAMB1_uc003vev.2_5'Flank|LAMB1_uc003vex.2_5'Flank|LAMB1_uc010ljn.1_5'Flank	NM_002291	NP_002282
DOCK5	80005	broad.mit.edu	37	8	25238543	25238543	+	Intron	SNP	G	A	A	rs34582687	by1000genomes	2011-2331:2012-1338-T	g.chr8:25238543G>A	uc003xeg.2	+						PPP2R2A_uc003xek.2_Intron|DOCK5_uc003xei.2_Intron|DOCK5_uc003xej.2_Intron	NM_024940	NP_079216
NFIB	4781	broad.mit.edu	37	9	14306884	14306884	+	Intron	SNP	T	C	C	rs10961471	by1000genomes	2011-2331:2012-1338-T	g.chr9:14306884T>C	uc003zle.2	-						NFIB_uc003zlf.2_Intron|NFIB_uc011lmo.1_Intron	NM_005596	NP_005587
KIAA0562	9731	broad.mit.edu	37	1	3741575	3741575	+	Intron	SNP	G	A	A			2011-2333:2012-309-T	g.chr1:3741575G>A	uc001aky.2	-						KIAA0562_uc010nzm.1_Intron	NM_014704	NP_055519
GRK5	2869	broad.mit.edu	37	10	121186839	121186839	+	Intron	SNP	T	C	C	rs145630564	by1000genomes	2011-2333:2012-309-T	g.chr10:121186839T>C	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
HERC2	8924	broad.mit.edu	37	15	28356905	28356905	+	3'UTR	SNP	C	T	T			2011-2333:2012-309-T	g.chr15:28356905C>T	uc001zbj.2	-	93					HERC2_uc001zbi.2_3'UTR	NM_004667	NP_004658
RPTOR	57521	broad.mit.edu	37	17	78718774	78718774	+	Intron	SNP	C	T	T	rs72851570	by1000genomes	2011-2333:2012-309-T	g.chr17:78718774C>T	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
PEG3	5178	broad.mit.edu	37	19	57352605	57352605	+	5'Flank	SNP	A	T	T			2011-2333:2012-309-T	g.chr19:57352605A>T	uc002qnv.2	-						ZIM2_uc002qnr.2_5'Flank|ZIM2_uc002qnq.2_5'Flank|ZIM2_uc010etp.2_5'Flank|ZIM2_uc010ygs.1_5'Flank|PEG3_uc002qnw.2_5'Flank|PEG3_uc002qnx.2_5'Flank|PEG3_uc010etr.2_5'Flank|MIMT1_uc010ett.1_RNA	NM_006210	NP_006201
RMND5A	64795	broad.mit.edu	37	2	87634306	87634306	+	Intron	SNP	G	A	A			2011-2333:2012-309-T	g.chr2:87634306G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87656471	87656471	+	Intron	SNP	C	T	T			2011-2333:2012-309-T	g.chr2:87656471C>T	uc002srs.3	+								
C2orf83	56918	broad.mit.edu	37	2	228482356	228482356	+	Intron	SNP	G	A	A			2011-2333:2012-309-T	g.chr2:228482356G>A	uc002vph.2	-						C2orf83_uc010zlu.1_Intron	NM_020161	NP_064546
GPR35	2859	broad.mit.edu	37	2	241565199	241565199	+	Intron	SNP	A	G	G			2011-2333:2012-309-T	g.chr2:241565199A>G	uc010fzh.1	+						GPR35_uc010fzi.1_Intron	NM_005301	NP_005292
RSPH1	89765	broad.mit.edu	37	21	43897303	43897303	+	Intron	SNP	C	T	T			2011-2333:2012-309-T	g.chr21:43897303C>T	uc002zbg.2	-							NM_080860	NP_543136
MST1R	4486	broad.mit.edu	37	3	49927406	49927406	+	Silent	SNP	G	A	A			2011-2333:2012-309-T	g.chr3:49927406G>A	uc003cxy.3	-	19	4162	c.3898C>T	c.(3898-3900)CTG>TTG	p.L1300L	MST1R_uc011bdc.1_Silent_p.L179L	NM_002447	NP_002438
BPHL	670	broad.mit.edu	37	6	3146237	3146237	+	Intron	SNP	G	T	T			2011-2333:2012-309-T	g.chr6:3146237G>T	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
AUTS2	26053	broad.mit.edu	37	7	69960644	69960644	+	Intron	SNP	A	G	G			2011-2333:2012-309-T	g.chr7:69960644A>G	uc003tvw.3	+						AUTS2_uc003tvx.3_Intron	NM_015570	NP_056385
PTPRN2	5799	broad.mit.edu	37	7	158264683	158264683	+	Intron	SNP	C	T	T			2011-2333:2012-309-T	g.chr7:158264683C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
UBR5	51366	broad.mit.edu	37	8	103359316	103359316	+	Missense_Mutation	SNP	G	A	A			2011-2333:2012-309-T	g.chr8:103359316G>A	uc003ykr.1	-	6	424	c.391C>T	c.(391-393)CGC>TGC	p.R131C	UBR5_uc003yks.1_Missense_Mutation_p.R131C	NM_015902	NP_056986
NUP214	8021	broad.mit.edu	37	9	134003119	134003119	+	Intron	SNP	G	A	A			2011-2333:2012-309-T	g.chr9:134003119G>A	uc004cag.2	+						NUP214_uc004cah.2_Intron|NUP214_uc004caf.1_Intron	NM_005085	NP_005076
HUWE1	10075	broad.mit.edu	37	X	53713601	53713601	+	5'UTR	SNP	C	T	T	rs5978184	by1000genomes	2011-2333:2012-309-T	g.chrX:53713601C>T	uc004dsp.2	-	1						NM_031407	NP_113584
LDLRAD1	388633	broad.mit.edu	37	1	54483694	54483694	+	Intron	SNP	C	T	T	rs34764952	by1000genomes	2011-2334:2012-1339-T	g.chr1:54483694C>T	uc001cwm.1	-						LDLRAD1_uc010onz.1_Intron|LDLRAD1_uc010ooa.1_Intron|LDLRAD1_uc009vzn.1_Intron	NM_001010978	NP_001010978
SPTA1	6708	broad.mit.edu	37	1	158639601	158639601	+	Intron	SNP	A	G	G	rs2298801	by1000genomes	2011-2334:2012-1339-T	g.chr1:158639601A>G	uc001fst.1	-							NM_003126	NP_003117
SPTA1	6708	broad.mit.edu	37	1	158656758	158656758	+	5'Flank	SNP	A	G	G	rs443000	by1000genomes	2011-2334:2012-1339-T	g.chr1:158656758A>G	uc001fst.1	-							NM_003126	NP_003117
IRF6	3664	broad.mit.edu	37	1	209975386	209975386	+	5'UTR	SNP	A	G	G	rs861019	byFrequency;by1000genomes	2011-2334:2012-1339-T	g.chr1:209975386A>G	uc001hhq.1	-	2					IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_5'UTR	NM_006147	NP_006138
PCDH15	65217	broad.mit.edu	37	10	56129066	56129066	+	Intron	SNP	A	G	G	rs11594958	by1000genomes	2011-2334:2012-1339-T	g.chr10:56129066A>G	uc001jju.1	-						PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Intron|PCDH15_uc010qhw.1_Intron|PCDH15_uc010qhx.1_Intron|PCDH15_uc010qhy.1_Intron|PCDH15_uc010qhz.1_Intron|PCDH15_uc010qia.1_Intron|PCDH15_uc010qib.1_Intron|PCDH15_uc001jjw.2_Intron	NM_033056	NP_149045
KNDC1	85442	broad.mit.edu	37	10	134982123	134982123	+	Intron	SNP	T	G	G	rs3008304	by1000genomes	2011-2334:2012-1339-T	g.chr10:134982123T>G	uc001llz.1	+						KNDC1_uc001lma.1_Intron	NM_152643	NP_689856
BRSK2	9024	broad.mit.edu	37	11	1416108	1416108	+	Intron	SNP	G	A	A	rs71469891		2011-2334:2012-1339-T	g.chr11:1416108G>A	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
PIK3C2A	5286	broad.mit.edu	37	11	17126670	17126670	+	Intron	SNP	C	T	T	rs2052188	by1000genomes	2011-2334:2012-1339-T	g.chr11:17126670C>T	uc001mmq.3	-						PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Intron|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636
CBL	867	broad.mit.edu	37	11	119146659	119146659	+	Intron	SNP	G	C	C	rs2511854	by1000genomes	2011-2334:2012-1339-T	g.chr11:119146659G>C	uc001pwe.2	+							NM_005188	NP_005179
CBL	867	broad.mit.edu	37	11	119148573	119148573	+	Intron	SNP	G	T	T	rs2510152	by1000genomes	2011-2334:2012-1339-T	g.chr11:119148573G>T	uc001pwe.2	+							NM_005188	NP_005179
KDM5A	5927	broad.mit.edu	37	12	464254	464254	+	Intron	SNP	T	C	C	rs3759371	by1000genomes	2011-2334:2012-1339-T	g.chr12:464254T>C	uc001qif.1	-						KDM5A_uc001qie.1_Intron|KDM5A_uc010sdn.1_Intron|KDM5A_uc010sdo.1_Intron	NM_001042603	NP_001036068
TSPAN9	10867	broad.mit.edu	37	12	3377875	3377875	+	Intron	SNP	C	T	T	rs76013798	by1000genomes	2011-2334:2012-1339-T	g.chr12:3377875C>T	uc001qlp.2	+							NM_006675	NP_006666
PZP	5858	broad.mit.edu	37	12	9316907	9316907	+	Intron	SNP	C	T	T	rs1863839	by1000genomes	2011-2334:2012-1339-T	g.chr12:9316907C>T	uc001qvl.2	-						PZP_uc009zgl.2_Intron|PZP_uc010sgo.1_Intron|PZP_uc009zgm.1_Intron	NM_002864	NP_002855
STYK1	55359	broad.mit.edu	37	12	10789855	10789855	+	Intron	SNP	T	G	G	rs2277410	by1000genomes	2011-2334:2012-1339-T	g.chr12:10789855T>G	uc001qys.2	-							NM_018423	NP_060893
BCL7A	605	broad.mit.edu	37	12	122468756	122468756	+	Intron	SNP	A	G	G	rs59397548	by1000genomes	2011-2334:2012-1339-T	g.chr12:122468756A>G	uc001ubp.2	+						BCL7A_uc001ubo.2_Intron	NM_001024808	NP_001019979
TMEM132D	121256	broad.mit.edu	37	12	129573466	129573466	+	Intron	SNP	A	G	G			2011-2334:2012-1339-T	g.chr12:129573466A>G	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
TMEM132D	121256	broad.mit.edu	37	12	129573518	129573518	+	Intron	SNP	A	G	G			2011-2334:2012-1339-T	g.chr12:129573518A>G	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
PARP4	143	broad.mit.edu	37	13	25034631	25034631	+	Intron	SNP	T	C	C	rs750770	by1000genomes	2011-2334:2012-1339-T	g.chr13:25034631T>C	uc001upl.2	-						PARP4_uc010tdc.1_Intron	NM_006437	NP_006428
FLT3	2322	broad.mit.edu	37	13	28607989	28607989	+	Intron	SNP	T	G	G	rs2491223	by1000genomes	2011-2334:2012-1339-T	g.chr13:28607989T>G	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
FLT3	2322	broad.mit.edu	37	13	28609846	28609846	+	Intron	SNP	A	T	T	rs2491228	by1000genomes	2011-2334:2012-1339-T	g.chr13:28609846A>T	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
FLT3	2322	broad.mit.edu	37	13	28609991	28609991	+	Intron	SNP	T	C	C	rs2491229	by1000genomes	2011-2334:2012-1339-T	g.chr13:28609991T>C	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
FLT3	2322	broad.mit.edu	37	13	28609997	28609997	+	Intron	SNP	T	C	C	rs2491230	by1000genomes	2011-2334:2012-1339-T	g.chr13:28609997T>C	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
BRCA2	675	broad.mit.edu	37	13	32890572	32890572	+	5'UTR	SNP	G	A	A	rs1799943	byFrequency;by1000genomes	2011-2334:2012-1339-T	g.chr13:32890572G>A	uc001uub.1	+	2					BRCA2_uc001uua.1_5'UTR	NM_000059	NP_000050
ERCC5	2073	broad.mit.edu	37	13	103498375	103498375	+	5'UTR	SNP	T	C	C	rs2296147	by1000genomes	2011-2334:2012-1339-T	g.chr13:103498375T>C	uc001vpw.2	+	1					ERCC5_uc001vpu.1_Intron|ERCC5_uc010tjb.1_5'UTR	NM_000123	NP_000114
MYH6	4624	broad.mit.edu	37	14	23865885	23865885	+	Intron	SNP	G	A	A	rs452036	by1000genomes	2011-2334:2012-1339-T	g.chr14:23865885G>A	uc001wjv.2	-							NM_002471	NP_002462
MYH6	4624	broad.mit.edu	37	14	23866713	23866713	+	Intron	SNP	A	G	G	rs412768	by1000genomes	2011-2334:2012-1339-T	g.chr14:23866713A>G	uc001wjv.2	-							NM_002471	NP_002462
SYNE2	23224	broad.mit.edu	37	14	64625181	64625181	+	Intron	SNP	T	A	A	rs17751454	by1000genomes	2011-2334:2012-1339-T	g.chr14:64625181T>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc001xgp.2_5'Flank	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64640665	64640665	+	Intron	SNP	C	G	G	rs7148122	by1000genomes	2011-2334:2012-1339-T	g.chr14:64640665C>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64655161	64655161	+	Intron	SNP	C	T	T	rs1255986	by1000genomes	2011-2334:2012-1339-T	g.chr14:64655161C>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64657684	64657684	+	Intron	SNP	C	A	A	rs1255988	by1000genomes	2011-2334:2012-1339-T	g.chr14:64657684C>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64674981	64674981	+	Intron	SNP	T	C	C	rs1152595	by1000genomes	2011-2334:2012-1339-T	g.chr14:64674981T>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_5'Flank	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64676098	64676098	+	Intron	SNP	A	G	G	rs1152592	by1000genomes	2011-2334:2012-1339-T	g.chr14:64676098A>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_5'UTR	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64680285	64680285	+	Intron	SNP	T	C	C	rs968257	by1000genomes	2011-2334:2012-1339-T	g.chr14:64680285T>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_Intron|SYNE2_uc010tsi.1_5'Flank|SYNE2_uc001xgs.2_5'Flank|SYNE2_uc001xgt.2_5'Flank	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64680848	64680848	+	Intron	SNP	A	G	G	rs1152591	by1000genomes	2011-2334:2012-1339-T	g.chr14:64680848A>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_Intron|SYNE2_uc010tsi.1_5'Flank|SYNE2_uc001xgs.2_5'Flank|SYNE2_uc001xgt.2_5'Flank	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64686207	64686207	+	Intron	SNP	A	G	G	rs915057	by1000genomes	2011-2334:2012-1339-T	g.chr14:64686207A>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_Intron|SYNE2_uc010tsi.1_Intron|SYNE2_uc001xgs.2_Intron|SYNE2_uc001xgt.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64688175	64688175	+	Intron	SNP	G	C	C	rs1152588	by1000genomes	2011-2334:2012-1339-T	g.chr14:64688175G>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_Intron|SYNE2_uc010tsi.1_Intron|SYNE2_uc001xgs.2_Intron|SYNE2_uc001xgt.2_Intron	NM_015180	NP_055995
SPTLC2	9517	broad.mit.edu	37	14	78023519	78023519	+	Intron	SNP	C	G	G	rs2272587	by1000genomes	2011-2334:2012-1339-T	g.chr14:78023519C>G	uc001xub.2	-							NM_004863	NP_004854
ERN2	10595	broad.mit.edu	37	16	23725023	23725023	+	5'Flank	SNP	G	A	A	rs34465489	by1000genomes	2011-2334:2012-1339-T	g.chr16:23725023G>A	uc002dma.3	-						ERN2_uc010bxp.2_5'Flank|ERN2_uc010bxq.1_5'Flank	NM_033266	NP_150296
MYH13	8735	broad.mit.edu	37	17	10219366	10219366	+	Intron	SNP	C	T	T	rs2240577	by1000genomes	2011-2334:2012-1339-T	g.chr17:10219366C>T	uc002gmk.1	-							NM_003802	NP_003793
PGAP3	93210	broad.mit.edu	37	17	37843859	37843859	+	Intron	SNP	G	A	A	rs2517956	by1000genomes	2011-2334:2012-1339-T	g.chr17:37843859G>A	uc002hsj.2	-						ERBB2_uc002hsm.2_5'Flank|ERBB2_uc010cwa.2_5'Flank|PGAP3_uc010cvy.2_5'Flank|PGAP3_uc010wej.1_Intron|PGAP3_uc002hsk.2_Intron|PGAP3_uc010cvz.2_Intron|ERBB2_uc002hsl.2_5'Flank	NM_033419	NP_219487
FAM134C	162427	broad.mit.edu	37	17	40737117	40737117	+	Intron	SNP	G	A	A	rs4792992	by1000genomes	2011-2334:2012-1339-T	g.chr17:40737117G>A	uc002ial.2	-						FAM134C_uc010wgq.1_Intron|FAM134C_uc002iam.1_Intron|FAM134C_uc010cyk.1_Intron	NM_178126	NP_835227
BRCA1	672	broad.mit.edu	37	17	41234304	41234304	+	Intron	SNP	C	T	T	rs3737559	by1000genomes	2011-2334:2012-1339-T	g.chr17:41234304C>T	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
LAMA1	284217	broad.mit.edu	37	18	6985507	6985507	+	Intron	SNP	G	A	A	rs523711	by1000genomes	2011-2334:2012-1339-T	g.chr18:6985507G>A	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
LAMA1	284217	broad.mit.edu	37	18	6992509	6992509	+	Intron	SNP	C	T	T	rs7243349	by1000genomes	2011-2334:2012-1339-T	g.chr18:6992509C>T	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
ZNF521	25925	broad.mit.edu	37	18	22804244	22804244	+	Intron	SNP	T	C	C	rs4129657	by1000genomes	2011-2334:2012-1339-T	g.chr18:22804244T>C	uc002kvk.2	-						ZNF521_uc010xbe.1_Intron|ZNF521_uc010dly.2_Intron|ZNF521_uc002kvl.2_Intron	NM_015461	NP_056276
CELF4	56853	broad.mit.edu	37	18	35071242	35071242	+	Intron	SNP	C	T	T	rs948530	by1000genomes	2011-2334:2012-1339-T	g.chr18:35071242C>T	uc002lae.2	-						CELF4_uc010dnd.1_Intron|CELF4_uc002lag.2_Intron|CELF4_uc002laf.2_Intron|CELF4_uc002lai.2_Intron	NM_020180	NP_064565
CRTC1	23373	broad.mit.edu	37	19	18809314	18809314	+	Intron	SNP	C	T	T	rs739848	by1000genomes	2011-2334:2012-1339-T	g.chr19:18809314C>T	uc002nkb.3	+						CRTC1_uc010ebv.2_Intron	NM_015321	NP_056136
DYRK1B	9149	broad.mit.edu	37	19	40325016	40325016	+	5'Flank	SNP	T	C	C	rs2072290	by1000genomes	2011-2334:2012-1339-T	g.chr19:40325016T>C	uc002omj.2	-						DYRK1B_uc002omi.2_5'Flank|DYRK1B_uc002omk.2_5'Flank|DYRK1B_uc002oml.2_5'Flank	NM_004714	NP_004705
PLEKHB2	55041	broad.mit.edu	37	2	131951231	131951231	+	Intron	SNP	T	A	A	rs9677819	by1000genomes	2011-2334:2012-1339-T	g.chr2:131951231T>A	uc002tsh.2	+								
PLEKHB2	55041	broad.mit.edu	37	2	131953329	131953329	+	Intron	SNP	C	T	T	rs1834273	by1000genomes	2011-2334:2012-1339-T	g.chr2:131953329C>T	uc002tsh.2	+								
PLEKHB2	55041	broad.mit.edu	37	2	131953403	131953403	+	Intron	SNP	T	C	C	rs1834272	by1000genomes	2011-2334:2012-1339-T	g.chr2:131953403T>C	uc002tsh.2	+								
LRP1B	53353	broad.mit.edu	37	2	141298467	141298467	+	Intron	SNP	A	C	C	rs6729619	by1000genomes	2011-2334:2012-1339-T	g.chr2:141298467A>C	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141298749	141298749	+	Intron	SNP	G	C	C	rs11694970	by1000genomes	2011-2334:2012-1339-T	g.chr2:141298749G>C	uc002tvj.1	-							NM_018557	NP_061027
NFE2L2	4780	broad.mit.edu	37	2	178130073	178130073	+	5'Flank	SNP	T	C	C	rs35652124	by1000genomes	2011-2334:2012-1339-T	g.chr2:178130073T>C	uc002ulh.3	-						NFE2L2_uc002ulg.3_5'Flank|NFE2L2_uc010zfa.1_5'Flank|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_5'Flank|NFE2L2_uc010frb.2_5'Flank	NM_006164	NP_006155
C2orf83	56918	broad.mit.edu	37	2	228479374	228479374	+	Intron	SNP	T	C	C	rs6436712	by1000genomes	2011-2334:2012-1339-T	g.chr2:228479374T>C	uc002vph.2	-						C2orf83_uc010zlu.1_Intron	NM_020161	NP_064546
ESPNL	339768	broad.mit.edu	37	2	239033382	239033382	+	Intron	SNP	A	G	G	rs62197368	by1000genomes	2011-2334:2012-1339-T	g.chr2:239033382A>G	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
ANO7	50636	broad.mit.edu	37	2	242144828	242144828	+	Intron	SNP	C	T	T	rs2012160	by1000genomes	2011-2334:2012-1339-T	g.chr2:242144828C>T	uc002wax.2	+							NM_001001891	NP_001001891
PAK7	57144	broad.mit.edu	37	20	9543688	9543688	+	Intron	SNP	T	G	G	rs2297347	by1000genomes	2011-2334:2012-1339-T	g.chr20:9543688T>G	uc002wnl.2	-						PAK7_uc002wnk.2_Intron|PAK7_uc002wnj.2_Intron|PAK7_uc010gby.1_Intron	NM_020341	NP_065074
DSCAM	1826	broad.mit.edu	37	21	41514421	41514421	+	Intron	SNP	G	C	C	rs11701139	by1000genomes	2011-2334:2012-1339-T	g.chr21:41514421G>C	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
MX2	4600	broad.mit.edu	37	21	42733991	42733991	+	Intron	SNP	G	A	A	rs60975870	byFrequency;by1000genomes	2011-2334:2012-1339-T	g.chr21:42733991G>A	uc002yzf.1	+						MX2_uc002yze.1_Intron	NM_002463	NP_002454
RIPK4	54101	broad.mit.edu	37	21	43160908	43160908	+	3'UTR	SNP	A	G	G	rs6586232	by1000genomes	2011-2334:2012-1339-T	g.chr21:43160908A>G	uc002yzn.1	-	8						NM_020639	NP_065690
RIPK4	54101	broad.mit.edu	37	21	43164345	43164345	+	Intron	SNP	A	C	C	rs2277790	by1000genomes	2011-2334:2012-1339-T	g.chr21:43164345A>C	uc002yzn.1	-							NM_020639	NP_065690
FAM19A5	25817	broad.mit.edu	37	22	48980765	48980765	+	Intron	SNP	C	T	T			2011-2334:2012-1339-T	g.chr22:48980765C>T	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
TTLL8	164714	broad.mit.edu	37	22	50459937	50459937	+	Intron	SNP	G	A	A	rs34394484		2011-2334:2012-1339-T	g.chr22:50459937G>A	uc011ark.1	-							NM_001080447	NP_001073916
TUBGCP6	85378	broad.mit.edu	37	22	50673250	50673250	+	Intron	SNP	C	T	T	rs111569990	by1000genomes	2011-2334:2012-1339-T	g.chr22:50673250C>T	uc003bkb.1	-						TUBGCP6_uc010har.1_Intron|TUBGCP6_uc010has.1_Intron	NM_020461	NP_065194
TGFBR2	7048	broad.mit.edu	37	3	30656065	30656065	+	Intron	SNP	C	T	T	rs56402737	by1000genomes	2011-2334:2012-1339-T	g.chr3:30656065C>T	uc003ceo.2	+						TGFBR2_uc003cen.2_Intron	NM_003242	NP_003233
SETD2	29072	broad.mit.edu	37	3	47079112	47079112	+	Intron	SNP	G	A	A	rs6768722	by1000genomes	2011-2334:2012-1339-T	g.chr3:47079112G>A	uc003cqs.2	-						SETD2_uc003cqv.2_Intron|SETD2_uc003cqr.2_Intron	NM_014159	NP_054878
GNL3	26354	broad.mit.edu	37	3	52719980	52719980	+	5'UTR	SNP	C	G	G	rs78053665	byFrequency;by1000genomes	2011-2334:2012-1339-T	g.chr3:52719980C>G	uc003dfd.2	+	1					PBRM1_uc003dey.2_5'Flank|GNL3_uc011beh.1_RNA|GNL3_uc003dfe.2_5'UTR|GNL3_uc003dff.2_5'UTR	NM_014366	NP_055181
BCL6	604	broad.mit.edu	37	3	187463972	187463972	+	5'Flank	SNP	T	C	C	rs16862537	by1000genomes	2011-2334:2012-1339-T	g.chr3:187463972T>C	uc003frq.1	-							NM_001706	NP_001697
TFRC	7037	broad.mit.edu	37	3	195789376	195789376	+	Intron	SNP	C	T	T	rs526860	by1000genomes	2011-2334:2012-1339-T	g.chr3:195789376C>T	uc003fvz.3	-						TFRC_uc003fwa.3_Intron|TFRC_uc010hzy.2_Intron|TFRC_uc011btr.1_Intron	NM_003234	NP_003225
TFRC	7037	broad.mit.edu	37	3	195804021	195804021	+	Intron	SNP	G	A	A	rs41300435	by1000genomes	2011-2334:2012-1339-T	g.chr3:195804021G>A	uc003fvz.3	-						TFRC_uc003fwa.3_Intron|TFRC_uc010hzy.2_Intron|TFRC_uc011btr.1_Intron	NM_003234	NP_003225
TFRC	7037	broad.mit.edu	37	3	195809564	195809564	+	5'Flank	SNP	A	G	G	rs6583288	by1000genomes	2011-2334:2012-1339-T	g.chr3:195809564A>G	uc003fvz.3	-						TFRC_uc003fwa.3_5'Flank|TFRC_uc010hzy.2_5'Flank|TFRC_uc011btr.1_5'Flank	NM_003234	NP_003225
FAM53A	152877	broad.mit.edu	37	4	1651569	1651569	+	Intron	SNP	T	C	C	rs62287689	by1000genomes	2011-2334:2012-1339-T	g.chr4:1651569T>C	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
FAM53A	152877	broad.mit.edu	37	4	1651582	1651582	+	Intron	SNP	A	T	T	rs36205275		2011-2334:2012-1339-T	g.chr4:1651582A>T	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
FAM53A	152877	broad.mit.edu	37	4	1651739	1651739	+	Intron	SNP	C	T	T			2011-2334:2012-1339-T	g.chr4:1651739C>T	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
FAM53A	152877	broad.mit.edu	37	4	1653858	1653858	+	Intron	SNP	T	A	A	rs13130121	by1000genomes	2011-2334:2012-1339-T	g.chr4:1653858T>A	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
FGFR3	2261	broad.mit.edu	37	4	1806519	1806519	+	Intron	SNP	C	T	T	rs3135890	by1000genomes	2011-2334:2012-1339-T	g.chr4:1806519C>T	uc003gdr.3	+						FGFR3_uc003gdu.2_Intron|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Intron	NM_000142	NP_000133
DNAH5	1767	broad.mit.edu	37	5	13735892	13735892	+	Intron	SNP	T	C	C	rs3734109	by1000genomes	2011-2334:2012-1339-T	g.chr5:13735892T>C	uc003jfd.2	-						DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360
CDH9	1007	broad.mit.edu	37	5	26889902	26889902	+	Intron	SNP	A	C	C	rs13190383	by1000genomes	2011-2334:2012-1339-T	g.chr5:26889902A>C	uc003jgs.1	-						CDH9_uc011cnv.1_Intron	NM_016279	NP_057363
RANBP17	64901	broad.mit.edu	37	5	170288551	170288551	+	5'Flank	SNP	C	G	G	rs3806931	by1000genomes	2011-2334:2012-1339-T	g.chr5:170288551C>G	uc003mba.2	+						RANBP17_uc003max.1_5'Flank|RANBP17_uc003may.1_5'Flank|RANBP17_uc003maz.1_5'Flank|RANBP17_uc010jjr.1_5'Flank|RANBP17_uc003maw.2_5'Flank|RANBP17_uc011dew.1_5'Flank	NM_022897	NP_075048
RANBP17	64901	broad.mit.edu	37	5	170380523	170380523	+	Intron	SNP	G	A	A	rs930891	by1000genomes	2011-2334:2012-1339-T	g.chr5:170380523G>A	uc003mba.2	+						RANBP17_uc003max.1_Intron|RANBP17_uc003may.1_Intron|RANBP17_uc003maz.1_Intron|RANBP17_uc010jjr.1_Intron	NM_022897	NP_075048
HLA-C	3107	broad.mit.edu	37	6	31236679	31236679	+	3'UTR	SNP	T	C	C	rs115820394	byFrequency;by1000genomes	2011-2334:2012-1339-T	g.chr6:31236679T>C	uc003nsy.2	-	8					HLA-C_uc011dnj.1_3'UTR|HLA-C_uc003nsx.2_3'UTR|HLA-C_uc003nsz.2_3'UTR|HLA-C_uc010jsl.2_3'UTR|HLA-C_uc003nta.2_3'UTR|HLA-C_uc003ntb.2_RNA|HLA-C_uc003ntc.1_RNA	NM_002117	NP_002108
ROS1	6098	broad.mit.edu	37	6	117674087	117674087	+	Intron	SNP	G	A	A	rs9481703	by1000genomes	2011-2334:2012-1339-T	g.chr6:117674087G>A	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117686943	117686943	+	Intron	SNP	A	T	T	rs2243383	by1000genomes	2011-2334:2012-1339-T	g.chr6:117686943A>T	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117714346	117714346	+	Intron	SNP	C	G	G	rs1535330	by1000genomes	2011-2334:2012-1339-T	g.chr6:117714346C>G	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117718303	117718303	+	Intron	SNP	A	G	G	rs9401003	by1000genomes	2011-2334:2012-1339-T	g.chr6:117718303A>G	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117724462	117724462	+	Intron	SNP	C	A	A	rs2243379	by1000genomes	2011-2334:2012-1339-T	g.chr6:117724462C>A	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117724499	117724499	+	Intron	SNP	A	C	C	rs1407179	byFrequency;by1000genomes	2011-2334:2012-1339-T	g.chr6:117724499A>C	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117725622	117725622	+	Intron	SNP	G	A	A	rs2243377	byFrequency;by1000genomes	2011-2334:2012-1339-T	g.chr6:117725622G>A	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117730592	117730592	+	Intron	SNP	G	A	A	rs2273602	by1000genomes	2011-2334:2012-1339-T	g.chr6:117730592G>A	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117730899	117730899	+	Intron	SNP	T	G	G	rs2243375	by1000genomes	2011-2334:2012-1339-T	g.chr6:117730899T>G	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
SYNE1	23345	broad.mit.edu	37	6	152958461	152958461	+	5'UTR	SNP	G	A	A	rs9478345	by1000genomes	2011-2334:2012-1339-T	g.chr6:152958461G>A	uc010kiw.2	-	1					SYNE1_uc003qot.3_5'Flank|SYNE1_uc003qou.3_5'UTR|SYNE1_uc010kjb.1_5'Flank	NM_182961	NP_892006
PARK2	5071	broad.mit.edu	37	6	161990483	161990483	+	Intron	SNP	C	T	T	rs3765474	by1000genomes	2011-2334:2012-1339-T	g.chr6:161990483C>T	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron|PARK2_uc011egf.1_Intron	NM_004562	NP_004553
RPS6KA2	6196	broad.mit.edu	37	6	166863724	166863724	+	Intron	SNP	C	T	T	rs28737237	by1000genomes	2011-2334:2012-1339-T	g.chr6:166863724C>T	uc003qvb.1	-						RPS6KA2_uc011ego.1_Intron|RPS6KA2_uc010kkl.1_Intron|RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
MAD1L1	8379	broad.mit.edu	37	7	1910110	1910110	+	Intron	SNP	T	C	C	rs71523270	by1000genomes	2011-2334:2012-1339-T	g.chr7:1910110T>C	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc003sld.1_Intron	NM_001013836	NP_001013858
PKD1L1	168507	broad.mit.edu	37	7	47886707	47886707	+	Intron	SNP	G	A	A	rs10280228	by1000genomes	2011-2334:2012-1339-T	g.chr7:47886707G>A	uc003tny.1	-							NM_138295	NP_612152
PKD1L1	168507	broad.mit.edu	37	7	47976357	47976357	+	Intron	SNP	A	T	T	rs36101306	by1000genomes	2011-2334:2012-1339-T	g.chr7:47976357A>T	uc003tny.1	-							NM_138295	NP_612152
ZNF804B	219578	broad.mit.edu	37	7	88389420	88389420	+	Intron	SNP	A	G	G	rs1858848	by1000genomes	2011-2334:2012-1339-T	g.chr7:88389420A>G	uc011khi.1	+							NM_181646	NP_857597
SRPK2	6733	broad.mit.edu	37	7	104800939	104800939	+	Intron	SNP	C	T	T	rs4730071	by1000genomes	2011-2334:2012-1339-T	g.chr7:104800939C>T	uc003vct.2	-						SRPK2_uc003vcu.2_Intron|SRPK2_uc003vcv.2_Intron|SRPK2_uc003vcw.1_Intron	NM_182691	NP_872633
PIK3CG	5294	broad.mit.edu	37	7	106523446	106523446	+	Intron	SNP	A	G	G	rs849397	by1000genomes	2011-2334:2012-1339-T	g.chr7:106523446A>G	uc003vdv.3	+						PIK3CG_uc003vdu.2_Intron|PIK3CG_uc003vdw.2_Intron	NM_002649	NP_002640
GRM8	2918	broad.mit.edu	37	7	126410171	126410171	+	Intron	SNP	G	C	C	rs35648111	by1000genomes	2011-2334:2012-1339-T	g.chr7:126410171G>C	uc003vlr.2	-						GRM8_uc003vls.2_Intron|GRM8_uc011kof.1_Intron|GRM8_uc003vlt.2_Intron|GRM8_uc010lkz.1_Intron|GRM8_uc003vlu.1_Intron	NM_000845	NP_000836
RIMS2	9699	broad.mit.edu	37	8	104709594	104709594	+	Intron	SNP	A	G	G	rs1176674	by1000genomes	2011-2334:2012-1339-T	g.chr8:104709594A>G	uc003ylp.2	+							NM_001100117	NP_001093587
KCNQ3	3786	broad.mit.edu	37	8	133200104	133200104	+	Intron	SNP	G	A	A	rs112359919	by1000genomes	2011-2334:2012-1339-T	g.chr8:133200104G>A	uc003ytj.2	-						KCNQ3_uc010mdt.2_Intron	NM_004519	NP_004510
TRAPPC9	83696	broad.mit.edu	37	8	141126957	141126957	+	Intron	SNP	T	G	G	rs112321743	by1000genomes	2011-2334:2012-1339-T	g.chr8:141126957T>G	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
MTAP	4507	broad.mit.edu	37	9	22009698	22009698	+	Intron	SNP	G	C	C	rs2069418	by1000genomes	2011-2334:2012-1339-T	g.chr9:22009698G>C	uc003zpi.1	+						CDKN2BAS_uc010miw.1_Intron|CDKN2BAS_uc010mix.1_Intron|CDKN2BAS_uc003zpm.2_Intron|CDKN2B_uc003zpn.2_5'Flank|CDKN2B_uc003zpo.2_5'Flank	NM_002451	NP_002442
GPR107	57720	broad.mit.edu	37	9	132897231	132897231	+	Intron	SNP	G	A	A	rs1003416	by1000genomes	2011-2334:2012-1339-T	g.chr9:132897231G>A	uc004bze.2	+						GPR107_uc004bzc.3_Intron|GPR107_uc011mbx.1_Intron|GPR107_uc004bzd.2_Intron|GPR107_uc004bzg.1_Intron	NM_001136557	NP_001130029
TSC1	7248	broad.mit.edu	37	9	135776034	135776034	+	Intron	SNP	C	T	T	rs1076160	by1000genomes	2011-2334:2012-1339-T	g.chr9:135776034C>T	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359
NOTCH1	4851	broad.mit.edu	37	9	139400406	139400406	+	Intron	SNP	C	T	T	rs11145764	by1000genomes	2011-2334:2012-1339-T	g.chr9:139400406C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139400904	139400904	+	Intron	SNP	C	T	T	rs4880098	by1000genomes	2011-2334:2012-1339-T	g.chr9:139400904C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139401577	139401577	+	Intron	SNP	C	G	G	rs3829116	by1000genomes	2011-2334:2012-1339-T	g.chr9:139401577C>G	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139402663	139402663	+	Intron	SNP	T	C	C	rs3124597	by1000genomes	2011-2334:2012-1339-T	g.chr9:139402663T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139402908	139402908	+	Intron	SNP	T	C	C	rs3812603	by1000genomes	2011-2334:2012-1339-T	g.chr9:139402908T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139403268	139403268	+	Intron	SNP	T	C	C	rs3125000	by1000genomes	2011-2334:2012-1339-T	g.chr9:139403268T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139403554	139403554	+	Intron	SNP	T	C	C	rs3124598	by1000genomes	2011-2334:2012-1339-T	g.chr9:139403554T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
GPR174	84636	broad.mit.edu	37	X	78426293	78426293	+	5'Flank	SNP	C	A	A	rs3827441	by1000genomes	2011-2334:2012-1339-T	g.chrX:78426293C>A	uc004edg.1	+							NM_032553	NP_115942
GPR174	84636	broad.mit.edu	37	X	78426471	78426471	+	5'UTR	SNP	C	T	T	rs3810712	by1000genomes	2011-2334:2012-1339-T	g.chrX:78426471C>T	uc004edg.1	+	1						NM_032553	NP_115942
GPR174	84636	broad.mit.edu	37	X	78426488	78426488	+	5'UTR	SNP	T	C	C	rs3810711	by1000genomes	2011-2334:2012-1339-T	g.chrX:78426488T>C	uc004edg.1	+	1						NM_032553	NP_115942
HDX	139324	broad.mit.edu	37	X	83757817	83757817	+	5'Flank	SNP	G	A	A	rs2294339	by1000genomes	2011-2334:2012-1339-T	g.chrX:83757817G>A	uc004eek.1	-						HDX_uc011mqv.1_5'Flank|HDX_uc004eel.1_5'Flank	NM_144657	NP_653258
BCORL1	63035	broad.mit.edu	37	X	129186012	129186012	+	Intron	SNP	C	T	T	rs12388749	by1000genomes	2011-2334:2012-1339-T	g.chrX:129186012C>T	uc004evb.1	+						BCORL1_uc004evc.1_Intron	NM_021946	NP_068765
ASH1L	55870	broad.mit.edu	37	1	155447986	155447986	+	Silent	SNP	G	T	T			2011-2335:2012-1340-T	g.chr1:155447986G>T	uc009wqq.2	-	3	5155	c.4675C>A	c.(4675-4677)CGA>AGA	p.R1559R	ASH1L_uc001fkt.2_Silent_p.R1559R|ASH1L_uc009wqr.1_Silent_p.R1559R	NM_018489	NP_060959
LMX1A	4009	broad.mit.edu	37	1	165173195	165173195	+	Silent	SNP	T	C	C			2011-2335:2012-1340-T	g.chr1:165173195T>C	uc001gcy.1	-	8	1292	c.1071A>G	c.(1069-1071)GAA>GAG	p.E357E	LMX1A_uc001gcz.1_Silent_p.E357E|LMX1A_uc001gcw.1_Silent_p.E75E|LMX1A_uc001gcx.1_Silent_p.E108E	NM_177398	NP_796372
USH2A	7399	broad.mit.edu	37	1	216221932	216221932	+	Missense_Mutation	SNP	G	A	A			2011-2335:2012-1340-T	g.chr1:216221932G>A	uc001hku.1	-	31	6494	c.6107C>T	c.(6106-6108)ACT>ATT	p.T2036I		NM_206933	NP_996816
PCDH15	65217	broad.mit.edu	37	10	55782726	55782726	+	Missense_Mutation	SNP	C	A	A			2011-2335:2012-1340-T	g.chr10:55782726C>A	uc001jju.1	-	19	2847	c.2452G>T	c.(2452-2454)GTG>TTG	p.V818L	PCDH15_uc010qhq.1_Missense_Mutation_p.V823L|PCDH15_uc010qhr.1_Missense_Mutation_p.V818L|PCDH15_uc010qhs.1_Missense_Mutation_p.V830L|PCDH15_uc010qht.1_Missense_Mutation_p.V825L|PCDH15_uc010qhu.1_Missense_Mutation_p.V818L|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.V818L|PCDH15_uc010qhw.1_Missense_Mutation_p.V781L|PCDH15_uc010qhx.1_Missense_Mutation_p.V747L|PCDH15_uc010qhy.1_Missense_Mutation_p.V823L|PCDH15_uc010qhz.1_Missense_Mutation_p.V818L|PCDH15_uc010qia.1_Missense_Mutation_p.V796L|PCDH15_uc010qib.1_Missense_Mutation_p.V796L|PCDH15_uc001jjw.2_Missense_Mutation_p.V818L	NM_033056	NP_149045
GRID1	2894	broad.mit.edu	37	10	87484083	87484083	+	Intron	SNP	C	T	T			2011-2335:2012-1340-T	g.chr10:87484083C>T	uc001kdl.1	-						GRID1_uc009xsu.1_Intron|GRID1_uc010qmf.1_Intron	NM_017551	NP_060021
GRID1	2894	broad.mit.edu	37	10	87614394	87614394	+	Intron	SNP	C	A	A			2011-2335:2012-1340-T	g.chr10:87614394C>A	uc001kdl.1	-						GRID1_uc009xsu.1_Intron	NM_017551	NP_060021
MAML2	84441	broad.mit.edu	37	11	96076278	96076278	+	5'UTR	SNP	G	A	A			2011-2335:2012-1340-T	g.chr11:96076278G>A	uc001pfw.1	-	1						NM_032427	NP_115803
VWA5A	4013	broad.mit.edu	37	11	124013200	124013200	+	Missense_Mutation	SNP	G	T	T			2011-2335:2012-1340-T	g.chr11:124013200G>T	uc001pzu.2	+	17	2284	c.2075G>T	c.(2074-2076)GGT>GTT	p.G692V	VWA5A_uc001pzt.2_Missense_Mutation_p.G692V	NM_001130142	NP_001123614
RIMBP2	23504	broad.mit.edu	37	12	130941125	130941125	+	Missense_Mutation	SNP	C	T	T			2011-2335:2012-1340-T	g.chr12:130941125C>T	uc001uil.2	-	4	387	c.223G>A	c.(223-225)GCG>ACG	p.A75T	RIMBP2_uc001uim.2_5'UTR	NM_015347	NP_056162
FLT3	2322	broad.mit.edu	37	13	28609825	28609825	+	Intron	SNP	A	G	G	rs2491227	by1000genomes	2011-2335:2012-1340-T	g.chr13:28609825A>G	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
MYH11	4629	broad.mit.edu	37	16	15797954	15797954	+	Missense_Mutation	SNP	G	A	A			2011-2335:2012-1340-T	g.chr16:15797954G>A	uc002ddy.2	-	41	5920	c.5813C>T	c.(5812-5814)CCT>CTT	p.P1938L	MYH11_uc002ddv.2_3'UTR|MYH11_uc002ddw.2_3'UTR|MYH11_uc002ddx.2_Missense_Mutation_p.P1945L|MYH11_uc010bvg.2_3'UTR|NDE1_uc010uzy.1_Intron|NDE1_uc002dds.2_Intron	NM_002474	NP_002465
TP53	7157	broad.mit.edu	37	17	7579373	7579373	+	Missense_Mutation	SNP	C	A	A			2011-2335:2012-1340-T	g.chr17:7579373C>A	uc002gim.2	-	4	508	c.314G>T	c.(313-315)GGC>GTC	p.G105V	TP53_uc002gig.1_Missense_Mutation_p.G105V|TP53_uc002gih.2_Missense_Mutation_p.G105V|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Missense_Mutation_p.G105V|TP53_uc010cni.1_Missense_Mutation_p.G105V|TP53_uc002gij.2_Missense_Mutation_p.G105V|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Missense_Mutation_p.G66V|TP53_uc010cnk.1_Missense_Mutation_p.G120V	NM_001126112	NP_001119584
ABCA8	10351	broad.mit.edu	37	17	66883260	66883260	+	Silent	SNP	A	G	G			2011-2335:2012-1340-T	g.chr17:66883260A>G	uc002jhp.2	-	24	3386	c.3207T>C	c.(3205-3207)GCT>GCC	p.A1069A	ABCA8_uc002jhq.2_Silent_p.A1109A|ABCA8_uc010wqq.1_Silent_p.A1109A|ABCA8_uc010wqr.1_Silent_p.A1048A	NM_007168	NP_009099
DCC	1630	broad.mit.edu	37	18	49866103	49866103	+	5'Flank	SNP	A	T	T			2011-2335:2012-1340-T	g.chr18:49866103A>T	uc002lfe.1	+							NM_005215	NP_005206
TTN	7273	broad.mit.edu	37	2	179456430	179456430	+	Missense_Mutation	SNP	C	A	A			2011-2335:2012-1340-T	g.chr2:179456430C>A	uc010zfg.1	-	252	52636	c.52412G>T	c.(52411-52413)GGA>GTA	p.G17471V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G11166V|TTN_uc010zfi.1_Missense_Mutation_p.G11099V|TTN_uc010zfj.1_Missense_Mutation_p.G10974V	NM_133378	NP_596869
STAT1	6772	broad.mit.edu	37	2	191864166	191864166	+	Intron	SNP	C	A	A			2011-2335:2012-1340-T	g.chr2:191864166C>A	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron|STAT1_uc010fsf.1_Intron	NM_007315	NP_009330
MAP2	4133	broad.mit.edu	37	2	210559661	210559661	+	Nonsense_Mutation	SNP	G	T	T	rs142105837		2011-2335:2012-1340-T	g.chr2:210559661G>T	uc002vde.1	+	7	3015	c.2767G>T	c.(2767-2769)GGA>TGA	p.G923*	MAP2_uc002vdc.1_Nonsense_Mutation_p.G923*|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Nonsense_Mutation_p.G919*	NM_002374	NP_002365
MAP2	4133	broad.mit.edu	37	2	210595804	210595804	+	3'UTR	SNP	T	C	C			2011-2335:2012-1340-T	g.chr2:210595804T>C	uc002vde.1	+	15					MAP2_uc002vdd.1_3'UTR|MAP2_uc002vdf.1_3'UTR|MAP2_uc002vdg.1_3'UTR|MAP2_uc002vdh.1_3'UTR|MAP2_uc002vdi.1_3'UTR	NM_002374	NP_002365
MAP2	4133	broad.mit.edu	37	2	210595864	210595864	+	3'UTR	SNP	C	G	G			2011-2335:2012-1340-T	g.chr2:210595864C>G	uc002vde.1	+	15					MAP2_uc002vdd.1_3'UTR|MAP2_uc002vdf.1_3'UTR|MAP2_uc002vdg.1_3'UTR|MAP2_uc002vdh.1_3'UTR|MAP2_uc002vdi.1_3'UTR	NM_002374	NP_002365
EFCAB6	64800	broad.mit.edu	37	22	44011784	44011784	+	Silent	SNP	C	T	T	rs149447547	byFrequency	2011-2335:2012-1340-T	g.chr22:44011784C>T	uc003bdy.1	-	21	2699	c.2484G>A	c.(2482-2484)GCG>GCA	p.A828A	EFCAB6_uc003bdz.1_Silent_p.A676A|EFCAB6_uc010gzi.1_Silent_p.A676A|EFCAB6_uc010gzj.1_Intron	NM_022785	NP_073622
CCR2	729230	broad.mit.edu	37	3	46399691	46399691	+	Missense_Mutation	SNP	A	G	G			2011-2335:2012-1340-T	g.chr3:46399691A>G	uc003cpn.3	+	2	1158	c.673A>G	c.(673-675)ATC>GTC	p.I225V	CCR2_uc003cpm.3_Missense_Mutation_p.I225V	NM_001123041	NP_001116513
MUC4	4585	broad.mit.edu	37	3	195502776	195502776	+	Intron	SNP	C	G	G			2011-2335:2012-1340-T	g.chr3:195502776C>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FAT4	79633	broad.mit.edu	37	4	126241609	126241609	+	Missense_Mutation	SNP	C	T	T			2011-2335:2012-1340-T	g.chr4:126241609C>T	uc003ifj.3	+	1	4043	c.4043C>T	c.(4042-4044)GCT>GTT	p.A1348V		NM_024582	NP_078858
FAT4	79633	broad.mit.edu	37	4	126370837	126370837	+	Missense_Mutation	SNP	C	G	G			2011-2335:2012-1340-T	g.chr4:126370837C>G	uc003ifj.3	+	9	8666	c.8666C>G	c.(8665-8667)TCC>TGC	p.S2889C	FAT4_uc011cgp.1_Missense_Mutation_p.S1187C|FAT4_uc003ifi.1_Missense_Mutation_p.S367C	NM_024582	NP_078858
CDH9	1007	broad.mit.edu	37	5	26890582	26890582	+	Missense_Mutation	SNP	C	G	G			2011-2335:2012-1340-T	g.chr5:26890582C>G	uc003jgs.1	-	8	1514	c.1345G>C	c.(1345-1347)GAA>CAA	p.E449Q	CDH9_uc011cnv.1_Missense_Mutation_p.E42Q	NM_016279	NP_057363
ADAMTS12	81792	broad.mit.edu	37	5	33596124	33596124	+	Missense_Mutation	SNP	C	A	A			2011-2335:2012-1340-T	g.chr5:33596124C>A	uc003jia.1	-	17	2732	c.2569G>T	c.(2569-2571)GGG>TGG	p.G857W	ADAMTS12_uc010iuq.1_Missense_Mutation_p.G772W	NM_030955	NP_112217
VARS	7407	broad.mit.edu	37	6	31760155	31760155	+	Intron	SNP	C	G	G	rs56214984		2011-2335:2012-1340-T	g.chr6:31760155C>G	uc003nxe.2	-						VARS_uc011doi.1_Intron	NM_006295	NP_006286
PKHD1	5314	broad.mit.edu	37	6	51612763	51612763	+	Silent	SNP	G	A	A			2011-2335:2012-1340-T	g.chr6:51612763G>A	uc003pah.1	-	58	9927	c.9651C>T	c.(9649-9651)GAC>GAT	p.D3217D	PKHD1_uc010jzn.1_Silent_p.D1200D|PKHD1_uc003pai.2_Silent_p.D3217D	NM_138694	NP_619639
EPHA7	2045	broad.mit.edu	37	6	93969258	93969258	+	Intron	SNP	C	A	A			2011-2335:2012-1340-T	g.chr6:93969258C>A	uc003poe.2	-						EPHA7_uc003pof.2_Intron|EPHA7_uc011eac.1_Intron	NM_004440	NP_004431
SYNE1	23345	broad.mit.edu	37	6	152470801	152470801	+	Silent	SNP	G	A	A			2011-2335:2012-1340-T	g.chr6:152470801G>A	uc010kiw.2	-	136	25055	c.24453C>T	c.(24451-24453)GCC>GCT	p.A8151A	SYNE1_uc010kiv.2_Silent_p.A2675A|SYNE1_uc003qos.3_Silent_p.A2675A|SYNE1_uc003qot.3_Silent_p.A8080A|SYNE1_uc003qou.3_Silent_p.A8151A|SYNE1_uc003qop.3_Silent_p.A313A|SYNE1_uc011eez.1_Silent_p.A353A|SYNE1_uc003qoq.3_Silent_p.A353A|SYNE1_uc003qor.3_Silent_p.A1051A	NM_182961	NP_892006
EXOC4	60412	broad.mit.edu	37	7	132937802	132937802	+	5'Flank	SNP	C	A	A			2011-2335:2012-1340-T	g.chr7:132937802C>A	uc003vrk.2	+						EXOC4_uc011kpo.1_5'Flank|EXOC4_uc003vri.2_5'Flank|EXOC4_uc003vrj.2_5'Flank	NM_021807	NP_068579
ZFHX4	79776	broad.mit.edu	37	8	77766283	77766283	+	Missense_Mutation	SNP	G	T	T			2011-2335:2012-1340-T	g.chr8:77766283G>T	uc003yav.2	+	10	7378	c.6991G>T	c.(6991-6993)GCT>TCT	p.A2331S	ZFHX4_uc003yau.1_Missense_Mutation_p.A2376S|ZFHX4_uc003yaw.1_Missense_Mutation_p.A2331S	NM_024721	NP_078997
RIMS2	9699	broad.mit.edu	37	8	104955086	104955086	+	Missense_Mutation	SNP	T	A	A			2011-2335:2012-1340-T	g.chr8:104955086T>A	uc003yls.2	+	12	2208	c.1967T>A	c.(1966-1968)CTT>CAT	p.L656H	RIMS2_uc003ylp.2_Missense_Mutation_p.L878H|RIMS2_uc003ylw.2_Missense_Mutation_p.L670H|RIMS2_uc003ylq.2_Missense_Mutation_p.L670H|RIMS2_uc003ylr.2_Missense_Mutation_p.L717H|RIMS2_uc003ylt.2_Missense_Mutation_p.L263H	NM_014677	NP_055492
CSMD3	114788	broad.mit.edu	37	8	113249649	113249649	+	Intron	SNP	T	C	C			2011-2335:2012-1340-T	g.chr8:113249649T>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	114389372	114389372	+	Intron	SNP	C	A	A			2011-2335:2012-1340-T	g.chr8:114389372C>A	uc003ynu.2	-						CSMD3_uc003ynt.2_5'UTR|CSMD3_uc011lhx.1_Intron|CSMD3_uc010mcx.1_Intron|CSMD3_uc003ynx.3_Intron	NM_198123	NP_937756
ZFP41	286128	broad.mit.edu	37	8	144342309	144342309	+	3'UTR	SNP	C	T	T			2011-2335:2012-1340-T	g.chr8:144342309C>T	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
CDKN2A	1029	broad.mit.edu	37	9	21971017	21971017	+	Missense_Mutation	SNP	G	T	T	rs121913386		2011-2335:2012-1340-T	g.chr9:21971017G>T	uc003zpk.2	-	2	553	c.341C>A	c.(340-342)CCC>CAC	p.P114H	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.A169A	NM_000077	NP_000068
ASMTL	8623	broad.mit.edu	37	X	1572119	1572119	+	5'Flank	SNP	C	T	T			2011-2335:2012-1340-T	g.chrX:1572119C>T	uc004cpx.1	-						ASMTL_uc011mhe.1_5'Flank|ASMTL_uc004cpy.1_5'Flank|ASMTL_uc011mhf.1_Intron	NM_004192	NP_004183
ODZ1	10178	broad.mit.edu	37	X	123540296	123540296	+	Nonsense_Mutation	SNP	C	A	A			2011-2335:2012-1340-T	g.chrX:123540296C>A	uc004euj.2	-	25	5069	c.5005G>T	c.(5005-5007)GGA>TGA	p.G1669*	ODZ1_uc011muj.1_Nonsense_Mutation_p.G1675*|ODZ1_uc010nqy.2_Nonsense_Mutation_p.G1676*	NM_014253	NP_055068
PANK4	55229	broad.mit.edu	37	1	2442831	2442831	+	Intron	SNP	G	T	T			2011-2336:2012-335-T	g.chr1:2442831G>T	uc001ajm.1	-						PANK4_uc010nza.1_Intron	NM_018216	NP_060686
EPHA2	1969	broad.mit.edu	37	1	16460840	16460840	+	Intron	SNP	G	A	A	rs6603856	by1000genomes	2011-2336:2012-335-T	g.chr1:16460840G>A	uc001aya.1	-							NM_004431	NP_004422
EPHA2	1969	broad.mit.edu	37	1	16464590	16464590	+	Missense_Mutation	SNP	C	T	T			2011-2336:2012-335-T	g.chr1:16464590C>T	uc001aya.1	-	5	1207	c.1070G>A	c.(1069-1071)CGC>CAC	p.R357H	EPHA2_uc010oca.1_Missense_Mutation_p.R357H	NM_004431	NP_004422
NOTCH2	4853	broad.mit.edu	37	1	120471857	120471857	+	Intron	SNP	C	T	T	rs2493392	by1000genomes	2011-2336:2012-335-T	g.chr1:120471857C>T	uc001eik.2	-							NM_024408	NP_077719
NOTCH2	4853	broad.mit.edu	37	1	120506108	120506108	+	Intron	SNP	G	A	A	rs2934381	by1000genomes	2011-2336:2012-335-T	g.chr1:120506108G>A	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
DDR2	4921	broad.mit.edu	37	1	162723162	162723162	+	Intron	SNP	T	C	C	rs881127	by1000genomes	2011-2336:2012-335-T	g.chr1:162723162T>C	uc001gcf.2	+						DDR2_uc001gcg.2_Intron	NM_001014796	NP_001014796
FAM5B	57795	broad.mit.edu	37	1	177140334	177140334	+	5'Flank	SNP	C	G	G			2011-2336:2012-335-T	g.chr1:177140334C>G	uc001glf.2	+							NM_021165	NP_066988
ADARB2	105	broad.mit.edu	37	10	1502955	1502955	+	Intron	SNP	A	T	T	rs113092512		2011-2336:2012-335-T	g.chr10:1502955A>T	uc009xhq.2	-							NM_018702	NP_061172
PCDH15	65217	broad.mit.edu	37	10	55892647	55892647	+	Missense_Mutation	SNP	T	A	A			2011-2336:2012-335-T	g.chr10:55892647T>A	uc001jju.1	-	15	2300	c.1905A>T	c.(1903-1905)TTA>TTT	p.L635F	PCDH15_uc010qhq.1_Missense_Mutation_p.L640F|PCDH15_uc010qhr.1_Missense_Mutation_p.L635F|PCDH15_uc010qhs.1_Missense_Mutation_p.L647F|PCDH15_uc010qht.1_Missense_Mutation_p.L642F|PCDH15_uc010qhu.1_Missense_Mutation_p.L635F|PCDH15_uc001jjv.1_Missense_Mutation_p.L613F|PCDH15_uc010qhv.1_Missense_Mutation_p.L635F|PCDH15_uc010qhw.1_Missense_Mutation_p.L598F|PCDH15_uc010qhx.1_Intron|PCDH15_uc010qhy.1_Missense_Mutation_p.L640F|PCDH15_uc010qhz.1_Missense_Mutation_p.L635F|PCDH15_uc010qia.1_Missense_Mutation_p.L613F|PCDH15_uc010qib.1_Missense_Mutation_p.L613F|PCDH15_uc001jjw.2_Missense_Mutation_p.L635F	NM_033056	NP_149045
NRAP	4892	broad.mit.edu	37	10	115423644	115423644	+	5'UTR	SNP	C	G	G			2011-2336:2012-335-T	g.chr10:115423644C>G	uc001laj.2	-	1					NRAP_uc001lak.2_5'UTR|NRAP_uc001lal.3_5'UTR	NM_198060	NP_932326
FANCF	2188	broad.mit.edu	37	11	22646688	22646688	+	Silent	SNP	T	C	C			2011-2336:2012-335-T	g.chr11:22646688T>C	uc001mql.1	-	1	700	c.669A>G	c.(667-669)GAA>GAG	p.E223E		NM_022725	NP_073562
ELP4	26610	broad.mit.edu	37	11	31648596	31648596	+	Intron	SNP	G	C	C			2011-2336:2012-335-T	g.chr11:31648596G>C	uc001mtb.2	+						ELP4_uc001mta.1_Intron|ELP4_uc001mtc.2_Intron|ELP4_uc010rdz.1_Intron	NM_019040	NP_061913
KRAS	3845	broad.mit.edu	37	12	25362552	25362552	+	3'UTR	SNP	A	C	C	rs712	by1000genomes	2011-2336:2012-335-T	g.chr12:25362552A>C	uc001rgp.1	-	6					KRAS_uc001rgq.1_3'UTR	NM_033360	NP_203524
FLT3	2322	broad.mit.edu	37	13	28610129	28610129	+	Missense_Mutation	SNP	G	A	A			2011-2336:2012-335-T	g.chr13:28610129G>A	uc001urw.2	-	11	1443	c.1361C>T	c.(1360-1362)TCG>TTG	p.S454L	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.S454L	NM_004119	NP_004110
ATP11A	23250	broad.mit.edu	37	13	113527683	113527683	+	Intron	SNP	G	A	A	rs61961612	by1000genomes	2011-2336:2012-335-T	g.chr13:113527683G>A	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc010ago.2_Intron	NM_015205	NP_056020
TMCO3	55002	broad.mit.edu	37	13	114151521	114151521	+	Intron	SNP	G	T	T	rs2260289	by1000genomes	2011-2336:2012-335-T	g.chr13:114151521G>T	uc001vtu.3	+						TMCO3_uc001vtt.3_Intron	NM_017905	NP_060375
FAM179B	23116	broad.mit.edu	37	14	45433245	45433245	+	Missense_Mutation	SNP	A	G	G			2011-2336:2012-335-T	g.chr14:45433245A>G	uc001wvv.2	+	1	1830	c.1621A>G	c.(1621-1623)ATG>GTG	p.M541V	FAM179B_uc001wvw.2_Missense_Mutation_p.M541V|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvq.2_5'Flank|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Missense_Mutation_p.M541V|FAM179B_uc001wvu.2_Missense_Mutation_p.M541V	NM_015091	NP_055906
SYNE2	23224	broad.mit.edu	37	14	64444876	64444876	+	Intron	SNP	G	A	A	rs1255896	by1000genomes	2011-2336:2012-335-T	g.chr14:64444876G>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64568894	64568895	+	Intron	DNP	GT	AC	AC	rs12589702	by1000genomes	2011-2336:2012-335-T	g.chr14:64568894_64568895GT>AC	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
LMF1	64788	broad.mit.edu	37	16	1000067	1000067	+	Intron	SNP	C	G	G			2011-2336:2012-335-T	g.chr16:1000067C>G	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000081	1000081	+	Intron	SNP	A	C	C			2011-2336:2012-335-T	g.chr16:1000081A>C	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
TP53	7157	broad.mit.edu	37	17	7578550	7578550	+	Missense_Mutation	SNP	G	T	T			2011-2336:2012-335-T	g.chr17:7578550G>T	uc002gim.2	-	5	574	c.380C>A	c.(379-381)TCC>TAC	p.S127Y	TP53_uc002gig.1_Missense_Mutation_p.S127Y|TP53_uc002gih.2_Missense_Mutation_p.S127Y|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'UTR|TP53_uc010cng.1_5'UTR|TP53_uc002gii.1_5'UTR|TP53_uc010cnh.1_Missense_Mutation_p.S127Y|TP53_uc010cni.1_Missense_Mutation_p.S127Y|TP53_uc002gij.2_Missense_Mutation_p.S127Y|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.S34Y|TP53_uc002gio.2_5'UTR|TP53_uc010vug.1_Missense_Mutation_p.S88Y	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7580941	7580941	+	Intron	SNP	C	T	T	rs9897559	by1000genomes	2011-2336:2012-335-T	g.chr17:7580941C>T	uc002gim.2	-						TP53_uc002gig.1_5'Flank|TP53_uc002gih.2_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gij.2_Intron|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Intron|TP53_uc010cnk.1_Intron	NM_001126112	NP_001119584
RPTOR	57521	broad.mit.edu	37	17	78722635	78722635	+	Intron	SNP	G	A	A			2011-2336:2012-335-T	g.chr17:78722635G>A	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78722639	78722639	+	Intron	SNP	C	T	T			2011-2336:2012-335-T	g.chr17:78722639C>T	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
MC2R	4158	broad.mit.edu	37	18	13887328	13887328	+	Intron	SNP	C	G	G			2011-2336:2012-335-T	g.chr18:13887328C>G	uc002ksp.1	-							NM_000529	NP_000520
SETBP1	26040	broad.mit.edu	37	18	42531364	42531364	+	Missense_Mutation	SNP	A	C	C			2011-2336:2012-335-T	g.chr18:42531364A>C	uc010dni.2	+	4	2355	c.2059A>C	c.(2059-2061)AGC>CGC	p.S687R		NM_015559	NP_056374
BRD4	23476	broad.mit.edu	37	19	15366207	15366207	+	Missense_Mutation	SNP	C	T	T			2011-2336:2012-335-T	g.chr19:15366207C>T	uc002nar.2	-	10	2170	c.1948G>A	c.(1948-1950)GAC>AAC	p.D650N	BRD4_uc002nas.2_Missense_Mutation_p.D650N|BRD4_uc002nat.3_Missense_Mutation_p.D650N	NM_058243	NP_490597
DYRK1B	9149	broad.mit.edu	37	19	40325016	40325016	+	5'Flank	SNP	T	C	C	rs2072290	by1000genomes	2011-2336:2012-335-T	g.chr19:40325016T>C	uc002omj.2	-						DYRK1B_uc002omi.2_5'Flank|DYRK1B_uc002omk.2_5'Flank|DYRK1B_uc002oml.2_5'Flank	NM_004714	NP_004705
RMND5A	64795	broad.mit.edu	37	2	87634107	87634107	+	Intron	SNP	C	T	T	rs148175359		2011-2336:2012-335-T	g.chr2:87634107C>T	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141004513	141004513	+	Intron	SNP	C	T	T	rs11895946	by1000genomes	2011-2336:2012-335-T	g.chr2:141004513C>T	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141460206	141460206	+	Intron	SNP	A	T	T			2011-2336:2012-335-T	g.chr2:141460206A>T	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141773307	141773307	+	Silent	SNP	G	A	A			2011-2336:2012-335-T	g.chr2:141773307G>A	uc002tvj.1	-	13	3120	c.2148C>T	c.(2146-2148)TAC>TAT	p.Y716Y	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179425563	179425563	+	Silent	SNP	C	T	T			2011-2336:2012-335-T	g.chr2:179425563C>T	uc010zfg.1	-	275	77816	c.77592G>A	c.(77590-77592)CTG>CTA	p.L25864L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L19559L|TTN_uc010zfi.1_Silent_p.L19492L|TTN_uc010zfj.1_Silent_p.L19367L	NM_133378	NP_596869
STAT1	6772	broad.mit.edu	37	2	191850566	191850566	+	Intron	SNP	T	C	C	rs2280233	by1000genomes	2011-2336:2012-335-T	g.chr2:191850566T>C	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron|STAT1_uc010fsf.1_Intron	NM_007315	NP_009330
ARFGEF2	10564	broad.mit.edu	37	20	47601377	47601377	+	Silent	SNP	C	T	T			2011-2336:2012-335-T	g.chr20:47601377C>T	uc002xtx.3	+	15	2222	c.2070C>T	c.(2068-2070)TCC>TCT	p.S690S	ARFGEF2_uc010zyf.1_5'UTR	NM_006420	NP_006411
TGFBR2	7048	broad.mit.edu	37	3	30732700	30732700	+	Intron	SNP	G	C	C	rs9831664	by1000genomes	2011-2336:2012-335-T	g.chr3:30732700G>C	uc003ceo.2	+						TGFBR2_uc003cen.2_Intron	NM_003242	NP_003233
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2011-2336:2012-335-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
MUC4	4585	broad.mit.edu	37	3	195494601	195494601	+	Intron	SNP	C	T	T			2011-2336:2012-335-T	g.chr3:195494601C>T	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FBXW7	55294	broad.mit.edu	37	4	153456102	153456102	+	5'UTR	SNP	A	G	G	rs1351903	by1000genomes	2011-2336:2012-335-T	g.chr4:153456102A>G	uc003ims.2	-	1					FBXW7_uc011cii.1_5'UTR|FBXW7_uc003imt.2_5'UTR|FBXW7_uc003imu.2_5'UTR|uc003imv.2_5'Flank	NM_033632	NP_361014
FAT1	2195	broad.mit.edu	37	4	187630554	187630554	+	Missense_Mutation	SNP	T	A	A			2011-2336:2012-335-T	g.chr4:187630554T>A	uc003izf.2	-	2	616	c.428A>T	c.(427-429)AAT>ATT	p.N143I	FAT1_uc010iso.1_Missense_Mutation_p.N143I	NM_005245	NP_005236
TRIO	7204	broad.mit.edu	37	5	14403737	14403737	+	Intron	SNP	G	A	A			2011-2336:2012-335-T	g.chr5:14403737G>A	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
FAT2	2196	broad.mit.edu	37	5	150901019	150901019	+	Missense_Mutation	SNP	T	G	G			2011-2336:2012-335-T	g.chr5:150901019T>G	uc003lue.3	-	18	11148	c.11135A>C	c.(11134-11136)CAT>CCT	p.H3712P	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.H405P	NM_001447	NP_001438
HLA-F	3134	broad.mit.edu	37	6	29692729	29692729	+	Intron	SNP	T	G	G	rs2072898	by1000genomes	2011-2336:2012-335-T	g.chr6:29692729T>G	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-G	3135	broad.mit.edu	37	6	29795768	29795768	+	Intron	SNP	T	C	C	rs111794296		2011-2336:2012-335-T	g.chr6:29795768T>C	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29796257	29796257	+	Intron	SNP	C	T	T	rs1625035		2011-2336:2012-335-T	g.chr6:29796257C>T	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29798425	29798425	+	Intron	SNP	G	T	T	rs111929453		2011-2336:2012-335-T	g.chr6:29798425G>T	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29798459	29798459	+	Intron	SNP	C	G	G	rs915668		2011-2336:2012-335-T	g.chr6:29798459C>G	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29893848	29893848	+	Intron	SNP	C	A	A	rs74350600		2011-2336:2012-335-T	g.chr6:29893848C>A	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29894439	29894439	+	Intron	SNP	A	T	T	rs2517771		2011-2336:2012-335-T	g.chr6:29894439A>T	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_RNA	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29894456	29894456	+	Intron	SNP	T	G	G	rs112546577		2011-2336:2012-335-T	g.chr6:29894456T>G	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_RNA	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29897129	29897129	+	Intron	SNP	C	T	T	rs112094586		2011-2336:2012-335-T	g.chr6:29897129C>T	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|uc003noi.2_Intron	NM_002127	NP_002118
HLA-B	3106	broad.mit.edu	37	6	31323468	31323468	+	Intron	SNP	G	T	T	rs3897530	byFrequency;by1000genomes	2011-2336:2012-335-T	g.chr6:31323468G>T	uc003nth.2	-						HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Intron|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_Intron|HLA-B_uc010jso.2_3'UTR	NM_005514	NP_005505
EPHA7	2045	broad.mit.edu	37	6	94124351	94124351	+	Intron	SNP	C	T	T			2011-2336:2012-335-T	g.chr6:94124351C>T	uc003poe.2	-						EPHA7_uc003pof.2_Intron|EPHA7_uc011eac.1_Intron|EPHA7_uc003pog.3_Intron	NM_004440	NP_004431
SYNE1	23345	broad.mit.edu	37	6	152522812	152522812	+	Intron	SNP	T	G	G	rs2673776	by1000genomes	2011-2336:2012-335-T	g.chr6:152522812T>G	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152523143	152523143	+	Intron	SNP	G	A	A	rs2635441	by1000genomes	2011-2336:2012-335-T	g.chr6:152523143G>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152622876	152622876	+	Intron	SNP	T	A	A	rs1010714	by1000genomes	2011-2336:2012-335-T	g.chr6:152622876T>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kiy.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152751558	152751558	+	Intron	SNP	C	T	T	rs553642	by1000genomes	2011-2336:2012-335-T	g.chr6:152751558C>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152774917	152774917	+	Intron	SNP	A	G	G	rs214973	by1000genomes	2011-2336:2012-335-T	g.chr6:152774917A>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
SDK1	221935	broad.mit.edu	37	7	4219886	4219886	+	Intron	SNP	G	A	A	rs35685329	by1000genomes	2011-2336:2012-335-T	g.chr7:4219886G>A	uc003smx.2	+						SDK1_uc010kso.2_Intron|SDK1_uc003smy.2_Intron	NM_152744	NP_689957
BAZ1B	9031	broad.mit.edu	37	7	72865147	72865147	+	Intron	SNP	C	A	A			2011-2336:2012-335-T	g.chr7:72865147C>A	uc003tyc.2	-							NM_032408	NP_115784
FOXP2	93986	broad.mit.edu	37	7	114270077	114270077	+	Intron	SNP	T	G	G	rs10227893	by1000genomes	2011-2336:2012-335-T	g.chr7:114270077T>G	uc003vhb.2	+						FOXP2_uc003vgu.2_Intron|FOXP2_uc003vgz.2_Intron|FOXP2_uc003vha.2_Intron|FOXP2_uc011kmu.1_Intron|FOXP2_uc011kmv.1_Intron|FOXP2_uc010ljz.1_Intron|FOXP2_uc003vgt.1_Intron|FOXP2_uc003vgv.1_Intron|FOXP2_uc003vgx.2_Intron|FOXP2_uc003vhd.2_Intron|FOXP2_uc003vhc.2_Intron	NM_014491	NP_055306
CAPZA2	830	broad.mit.edu	37	7	116514258	116514258	+	Intron	SNP	A	G	G			2011-2336:2012-335-T	g.chr7:116514258A>G	uc003vil.2	+						CAPZA2_uc003vik.1_Intron|CAPZA2_uc011knk.1_Intron	NM_006136	NP_006127
MLL3	58508	broad.mit.edu	37	7	151877958	151877958	+	Silent	SNP	T	C	C			2011-2336:2012-335-T	g.chr7:151877958T>C	uc003wla.2	-	36	7206	c.6987A>G	c.(6985-6987)GGA>GGG	p.G2329G	MLL3_uc003wkz.2_Silent_p.G1390G|MLL3_uc003wky.2_5'Flank	NM_170606	NP_733751
UNC5D	137970	broad.mit.edu	37	8	35647971	35647971	+	Missense_Mutation	SNP	C	A	A			2011-2336:2012-335-T	g.chr8:35647971C>A	uc003xjr.1	+	17	3080	c.2752C>A	c.(2752-2754)CTG>ATG	p.L918M	UNC5D_uc003xjs.1_Missense_Mutation_p.L913M|UNC5D_uc003xju.1_Missense_Mutation_p.L494M	NM_080872	NP_543148
RB1CC1	9821	broad.mit.edu	37	8	53554756	53554756	+	Intron	SNP	T	G	G	rs12114890	by1000genomes	2011-2336:2012-335-T	g.chr8:53554756T>G	uc003xre.3	-						RB1CC1_uc003xrf.3_Intron	NM_014781	NP_055596
ZFHX4	79776	broad.mit.edu	37	8	77754975	77754975	+	Missense_Mutation	SNP	A	G	G			2011-2336:2012-335-T	g.chr8:77754975A>G	uc003yav.2	+	6	3761	c.3374A>G	c.(3373-3375)AAT>AGT	p.N1125S	ZFHX4_uc003yau.1_Missense_Mutation_p.N1160S|ZFHX4_uc003yaw.1_Missense_Mutation_p.N1125S	NM_024721	NP_078997
UBR5	51366	broad.mit.edu	37	8	103283313	103283313	+	Intron	SNP	C	T	T	rs3018508	by1000genomes	2011-2336:2012-335-T	g.chr8:103283313C>T	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
PKHD1L1	93035	broad.mit.edu	37	8	110432798	110432798	+	Missense_Mutation	SNP	A	G	G			2011-2336:2012-335-T	g.chr8:110432798A>G	uc003yne.2	+	23	2680	c.2576A>G	c.(2575-2577)GAG>GGG	p.E859G		NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113657602	113657602	+	Intron	SNP	G	A	A	rs7012820	by1000genomes	2011-2336:2012-335-T	g.chr8:113657602G>A	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
HUWE1	10075	broad.mit.edu	37	X	53661104	53661104	+	Intron	SNP	T	C	C			2011-2336:2012-335-T	g.chrX:53661104T>C	uc004dsp.2	-							NM_031407	NP_113584
EPHA2	1969	broad.mit.edu	37	1	16462185	16462185	+	Nonsense_Mutation	SNP	G	A	A			2011-2337:2012-307-T	g.chr1:16462185G>A	uc001aya.1	-	6	1530	c.1393C>T	c.(1393-1395)CGA>TGA	p.R465*	EPHA2_uc010oca.1_Nonsense_Mutation_p.R465*	NM_004431	NP_004422
NOTCH2	4853	broad.mit.edu	37	1	120484407	120484407	+	Intron	SNP	G	A	A			2011-2337:2012-307-T	g.chr1:120484407G>A	uc001eik.2	-						NOTCH2_uc001eil.2_Intron	NM_024408	NP_077719
LOC200030	200030	broad.mit.edu	37	1	148009647	148009647	+	Intron	SNP	A	G	G			2011-2337:2012-307-T	g.chr1:148009647A>G	uc001eqf.2	-						LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Intron|NBPF14_uc001eqq.2_Intron|NBPF14_uc010pad.1_Intron|NBPF14_uc001eqs.1_Intron	NM_017940	NP_060410
RET	5979	broad.mit.edu	37	10	43623514	43623514	+	Intron	SNP	G	A	A			2011-2337:2012-307-T	g.chr10:43623514G>A	uc001jal.2	+							NM_020975	NP_066124
AHNAK	79026	broad.mit.edu	37	11	62299824	62299824	+	Missense_Mutation	SNP	C	T	T			2011-2337:2012-307-T	g.chr11:62299824C>T	uc001ntl.2	-	5	2365	c.2065G>A	c.(2065-2067)GAT>AAT	p.D689N	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
ZDHHC20	253832	broad.mit.edu	37	13	21951549	21951549	+	Intron	SNP	A	G	G			2011-2337:2012-307-T	g.chr13:21951549A>G	uc001uob.2	-						ZDHHC20_uc001uod.2_Intron|ZDHHC20_uc001uoc.2_Intron|ZDHHC20_uc001uoe.2_Intron|ZDHHC20_uc010tcs.1_Intron|uc001uoa.1_5'Flank	NM_153251	NP_694983
GPC5	2262	broad.mit.edu	37	13	92408755	92408755	+	Intron	SNP	T	A	A			2011-2337:2012-307-T	g.chr13:92408755T>A	uc010tif.1	+							NM_004466	NP_004457
RASA3	22821	broad.mit.edu	37	13	114778197	114778197	+	Intron	SNP	T	C	C	rs117851026	by1000genomes	2011-2337:2012-307-T	g.chr13:114778197T>C	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
LMF1	64788	broad.mit.edu	37	16	998761	998761	+	Intron	SNP	C	T	T			2011-2337:2012-307-T	g.chr16:998761C>T	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
GEMIN4	50628	broad.mit.edu	37	17	652387	652387	+	Intron	SNP	G	A	A	rs61690792		2011-2337:2012-307-T	g.chr17:652387G>A	uc002frs.1	-						GEMIN4_uc010vqa.1_Intron	NM_015721	NP_056536
TP53	7157	broad.mit.edu	37	17	7574018	7574018	+	Missense_Mutation	SNP	G	A	A			2011-2337:2012-307-T	g.chr17:7574018G>A	uc002gim.2	-	10	1203	c.1009C>T	c.(1009-1011)CGC>TGC	p.R337C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Missense_Mutation_p.R205C|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Missense_Mutation_p.R337C	NM_001126112	NP_001119584
MYH1	4619	broad.mit.edu	37	17	10411656	10411656	+	Intron	SNP	A	G	G			2011-2337:2012-307-T	g.chr17:10411656A>G	uc002gmo.2	-						uc002gml.1_Intron	NM_005963	NP_005954
SDK2	54549	broad.mit.edu	37	17	71497005	71497005	+	Intron	SNP	C	A	A			2011-2337:2012-307-T	g.chr17:71497005C>A	uc010dfm.2	-							NM_001144952	NP_001138424
TPO	7173	broad.mit.edu	37	2	1514895	1514895	+	Intron	SNP	C	T	T			2011-2337:2012-307-T	g.chr2:1514895C>T	uc002qww.2	+						TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Intron|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Intron|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538
DNMT3A	1788	broad.mit.edu	37	2	25457129	25457129	+	3'UTR	SNP	C	T	T			2011-2337:2012-307-T	g.chr2:25457129C>T	uc002rgc.2	-	23					DNMT3A_uc002rgd.2_3'UTR|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rgb.2_3'UTR	NM_022552	NP_072046
RMND5A	64795	broad.mit.edu	37	2	87641717	87641717	+	Intron	SNP	C	A	A			2011-2337:2012-307-T	g.chr2:87641717C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87656503	87656503	+	Intron	SNP	G	T	T	rs144665595	by1000genomes	2011-2337:2012-307-T	g.chr2:87656503G>T	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179537355	179537355	+	Intron	SNP	G	T	T			2011-2337:2012-307-T	g.chr2:179537355G>T	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'Flank|TTN_uc002una.1_Intron|TTN_uc010frf.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179649163	179649163	+	Intron	SNP	C	T	T			2011-2337:2012-307-T	g.chr2:179649163C>T	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002unb.2_Intron	NM_133378	NP_596869
TRPM2	7226	broad.mit.edu	37	21	45837313	45837313	+	Intron	SNP	G	A	A			2011-2337:2012-307-T	g.chr21:45837313G>A	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron|uc011afe.1_Intron	NM_003307	NP_003298
CLTCL1	8218	broad.mit.edu	37	22	19189933	19189933	+	Intron	SNP	G	C	C	rs71184791		2011-2337:2012-307-T	g.chr22:19189933G>C	uc002zpb.2	-						CLTCL1_uc011agv.1_Intron|CLTCL1_uc011agw.1_Intron|CLTCL1_uc011agt.1_Intron|CLTCL1_uc011agu.1_Intron|CLTCL1_uc010grm.1_Intron|CLTCL1_uc002zpe.2_Intron|CLTCL1_uc002zpd.1_Intron	NM_007098	NP_009029
SLC7A14	57709	broad.mit.edu	37	3	170244692	170244692	+	Silent	SNP	G	T	T			2011-2337:2012-307-T	g.chr3:170244692G>T	uc003fgz.2	-	2	350	c.34C>A	c.(34-36)CGG>AGG	p.R12R	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000
RELL1	768211	broad.mit.edu	37	4	37606434	37606434	+	Intron	SNP	C	G	G			2011-2337:2012-307-T	g.chr4:37606434C>G	uc003gsz.2	-							NM_001085399	NP_001078868
TET2	54790	broad.mit.edu	37	4	106190867	106190867	+	Missense_Mutation	SNP	A	G	G			2011-2337:2012-307-T	g.chr4:106190867A>G	uc003hxk.2	+	9	4531	c.4145A>G	c.(4144-4146)CAC>CGC	p.H1382R	TET2_uc011cez.1_Missense_Mutation_p.H1403R|TET2_uc003hxj.2_RNA	NM_001127208	NP_001120680
SLC10A7	84068	broad.mit.edu	37	4	147207688	147207688	+	Intron	SNP	T	C	C			2011-2337:2012-307-T	g.chr4:147207688T>C	uc010ioz.2	-						SLC10A7_uc003ikr.2_Intron|SLC10A7_uc010ipa.2_Intron|SLC10A7_uc003iks.2_Intron	NM_001029998	NP_001025169
FAT1	2195	broad.mit.edu	37	4	187525110	187525110	+	Nonsense_Mutation	SNP	G	A	A			2011-2337:2012-307-T	g.chr4:187525110G>A	uc003izf.2	-	19	10758	c.10570C>T	c.(10570-10572)CAG>TAG	p.Q3524*		NM_005245	NP_005236
FAT1	2195	broad.mit.edu	37	4	187549865	187549865	+	Nonsense_Mutation	SNP	G	C	C			2011-2337:2012-307-T	g.chr4:187549865G>C	uc003izf.2	-	8	4564	c.4376C>G	c.(4375-4377)TCA>TGA	p.S1459*		NM_005245	NP_005236
IL6ST	3572	broad.mit.edu	37	5	55259087	55259087	+	Intron	SNP	G	A	A			2011-2337:2012-307-T	g.chr5:55259087G>A	uc003jqq.2	-						IL6ST_uc010iwb.2_Intron|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Intron|IL6ST_uc003jqr.2_Intron	NM_002184	NP_002175
RASA1	5921	broad.mit.edu	37	5	86645117	86645117	+	Nonsense_Mutation	SNP	C	T	T			2011-2337:2012-307-T	g.chr5:86645117C>T	uc003kiw.2	+	8	1307	c.1189C>T	c.(1189-1191)CAG>TAG	p.Q397*	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_Nonsense_Mutation_p.Q220*|RASA1_uc011ctv.1_Nonsense_Mutation_p.Q230*|RASA1_uc011ctw.1_Nonsense_Mutation_p.Q231*|RASA1_uc010jaw.2_Nonsense_Mutation_p.Q219*	NM_002890	NP_002881
PCDHA9	9752	broad.mit.edu	37	5	140228303	140228303	+	Silent	SNP	C	T	T			2011-2337:2012-307-T	g.chr5:140228303C>T	uc003lhu.2	+	1	947	c.223C>T	c.(223-225)CTG>TTG	p.L75L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.L75L	NM_031857	NP_114063
BTNL9	153579	broad.mit.edu	37	5	180473128	180473128	+	Intron	SNP	C	T	T			2011-2337:2012-307-T	g.chr5:180473128C>T	uc003mmt.2	+						BTNL9_uc011dhi.1_Intron	NM_152547	NP_689760
SYNE1	23345	broad.mit.edu	37	6	152777249	152777249	+	Intron	SNP	C	G	G			2011-2337:2012-307-T	g.chr6:152777249C>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
RPS6KA2	6196	broad.mit.edu	37	6	166995343	166995343	+	Intron	SNP	G	A	A			2011-2337:2012-307-T	g.chr6:166995343G>A	uc003qvb.1	-						RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
ADAP1	11033	broad.mit.edu	37	7	977246	977246	+	Intron	SNP	G	A	A			2011-2337:2012-307-T	g.chr7:977246G>A	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	977327	977327	+	Intron	SNP	G	A	A			2011-2337:2012-307-T	g.chr7:977327G>A	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTN	5764	broad.mit.edu	37	7	136938287	136938287	+	Silent	SNP	C	T	T			2011-2337:2012-307-T	g.chr7:136938287C>T	uc003vtq.2	-	3	576	c.213G>A	c.(211-213)CGG>CGA	p.R71R	PTN_uc010lmx.2_Silent_p.R71R|PTN_uc003vtr.1_Silent_p.R71R	NM_002825	NP_002816
PTPRN2	5799	broad.mit.edu	37	7	157852047	157852047	+	Intron	SNP	A	C	C			2011-2337:2012-307-T	g.chr7:157852047A>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
VIPR2	7434	broad.mit.edu	37	7	158921977	158921977	+	Intron	SNP	G	A	A			2011-2337:2012-307-T	g.chr7:158921977G>A	uc003woh.2	-						VIPR2_uc010lqx.2_Intron|VIPR2_uc010lqy.2_Intron	NM_003382	NP_003373
ENPP2	5168	broad.mit.edu	37	8	120629852	120629852	+	Intron	SNP	C	T	T			2011-2337:2012-307-T	g.chr8:120629852C>T	uc003yot.1	-						ENPP2_uc003yos.1_Intron|ENPP2_uc010mdd.1_Intron	NM_001040092	NP_001035181
CDKN2A	1029	broad.mit.edu	37	9	21971106	21971106	+	Silent	SNP	G	A	A			2011-2337:2012-307-T	g.chr9:21971106G>A	uc003zpk.2	-	2	464	c.252C>T	c.(250-252)GAC>GAT	p.D84D	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.R140C	NM_000077	NP_000068
NOTCH1	4851	broad.mit.edu	37	9	139413049	139413049	+	Missense_Mutation	SNP	G	A	A			2011-2337:2012-307-T	g.chr9:139413049G>A	uc004chz.2	-	6	1093	c.1093C>T	c.(1093-1095)CGC>TGC	p.R365C		NM_017617	NP_060087
HUWE1	10075	broad.mit.edu	37	X	53560975	53560975	+	Missense_Mutation	SNP	G	C	C			2011-2337:2012-307-T	g.chrX:53560975G>C	uc004dsp.2	-	83	13417	c.13015C>G	c.(13015-13017)CAC>GAC	p.H4339D	HUWE1_uc004dsn.2_Missense_Mutation_p.H3147D	NM_031407	NP_113584
PRDM16	63976	broad.mit.edu	37	1	3186357	3186357	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr1:3186357A>G	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
CHD5	26038	broad.mit.edu	37	1	6190209	6190209	+	Intron	SNP	T	A	A			2011-2338:2012-306-T	g.chr1:6190209T>A	uc001amb.1	-						CHD5_uc001alz.1_5'UTR|CHD5_uc001ama.1_Intron|CHD5_uc001amc.1_Intron|CHD5_uc009vlx.1_Intron	NM_015557	NP_056372
MTOR	2475	broad.mit.edu	37	1	11175480	11175480	+	Silent	SNP	C	T	T			2011-2338:2012-306-T	g.chr1:11175480C>T	uc001asd.2	-	51	7183	c.7062G>A	c.(7060-7062)CTG>CTA	p.L2354L	MTOR_uc001asc.2_Silent_p.L559L	NM_004958	NP_004949
NBPF1	55672	broad.mit.edu	37	1	16892065	16892065	+	Intron	SNP	G	A	A	rs71244296		2011-2338:2012-306-T	g.chr1:16892065G>A	uc009vos.1	-						uc001ayw.2_5'Flank	NM_017940	NP_060410
MACF1	23499	broad.mit.edu	37	1	39797147	39797147	+	Missense_Mutation	SNP	A	T	T			2011-2338:2012-306-T	g.chr1:39797147A>T	uc010oiu.1	+	1	338	c.207A>T	c.(205-207)AGA>AGT	p.R69S	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033
ABCA4	24	broad.mit.edu	37	1	94480285	94480286	+	Intron	DNP	CA	AT	AT			2011-2338:2012-306-T	g.chr1:94480285_94480286CA>AT	uc001dqh.2	-						ABCA4_uc009wdp.1_Intron	NM_000350	NP_000341
COL11A1	1301	broad.mit.edu	37	1	103345498	103345498	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr1:103345498C>A	uc001dul.2	-						COL11A1_uc001duk.2_Intron|COL11A1_uc001dum.2_Intron|COL11A1_uc001dun.2_Intron|COL11A1_uc009weh.2_Intron	NM_001854	NP_001845
INTS3	65123	broad.mit.edu	37	1	153723662	153723662	+	Nonsense_Mutation	SNP	C	T	T			2011-2338:2012-306-T	g.chr1:153723662C>T	uc009wom.2	+	8	897	c.676C>T	c.(676-678)CAG>TAG	p.Q226*	INTS3_uc001fct.2_Nonsense_Mutation_p.Q226*|INTS3_uc001fcu.2_5'UTR|INTS3_uc001fcv.2_Nonsense_Mutation_p.Q20*|INTS3_uc010peb.1_Nonsense_Mutation_p.Q20*|INTS3_uc001fcw.2_5'UTR	NM_023015	NP_075391
TPM3	7170	broad.mit.edu	37	1	154145593	154145593	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr1:154145593G>T	uc001fec.1	-	4	577	c.462C>A	c.(460-462)CAC>CAA	p.H154Q	TPM3_uc001fdx.1_5'Flank|TPM3_uc010pei.1_Missense_Mutation_p.H27Q|TPM3_uc001fdy.1_Missense_Mutation_p.H117Q|TPM3_uc001fdz.1_Missense_Mutation_p.H117Q|TPM3_uc001fea.1_Missense_Mutation_p.H117Q|TPM3_uc001feb.1_Missense_Mutation_p.H117Q|TPM3_uc010pej.1_Missense_Mutation_p.H50Q|TPM3_uc009wor.2_Intron|TPM3_uc001fed.1_Missense_Mutation_p.H117Q	NM_152263	NP_689476
SPTA1	6708	broad.mit.edu	37	1	158605702	158605702	+	Splice_Site	SNP	C	T	T			2011-2338:2012-306-T	g.chr1:158605702C>T	uc001fst.1	-	38	5631	c.5432_splice	c.e38+1	p.R1811_splice		NM_003126	NP_003117
SPTA1	6708	broad.mit.edu	37	1	158622413	158622413	+	Silent	SNP	T	C	C			2011-2338:2012-306-T	g.chr1:158622413T>C	uc001fst.1	-	23	3418	c.3219A>G	c.(3217-3219)GAA>GAG	p.E1073E		NM_003126	NP_003117
USH2A	7399	broad.mit.edu	37	1	216011597	216011597	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr1:216011597C>T	uc001hku.1	-							NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216363673	216363673	+	Missense_Mutation	SNP	T	A	A			2011-2338:2012-306-T	g.chr1:216363673T>A	uc001hku.1	-	20	4675	c.4288A>T	c.(4288-4290)ACT>TCT	p.T1430S	USH2A_uc001hkv.2_Missense_Mutation_p.T1430S	NM_206933	NP_996816
AKT3	10000	broad.mit.edu	37	1	243727041	243727041	+	Missense_Mutation	SNP	G	C	C			2011-2338:2012-306-T	g.chr1:243727041G>C	uc001iab.1	-	9	1010	c.929C>G	c.(928-930)CCA>CGA	p.P310R	AKT3_uc001hzz.1_Missense_Mutation_p.P310R	NM_005465	NP_005456
KIF26B	55083	broad.mit.edu	37	1	245607291	245607291	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr1:245607291C>T	uc001ibf.1	+						KIF26B_uc010pyq.1_Intron	NM_018012	NP_060482
SMYD3	64754	broad.mit.edu	37	1	246139415	246139415	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr1:246139415A>G	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
SFMBT2	57713	broad.mit.edu	37	10	7325878	7325878	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr10:7325878C>A	uc009xio.1	-	6	851	c.760G>T	c.(760-762)GAC>TAC	p.D254Y	SFMBT2_uc001ijn.1_Missense_Mutation_p.D254Y|SFMBT2_uc010qay.1_Missense_Mutation_p.D254Y	NM_001029880	NP_001025051
CUBN	8029	broad.mit.edu	37	10	16967326	16967326	+	Missense_Mutation	SNP	G	A	A	rs143899993	byFrequency	2011-2338:2012-306-T	g.chr10:16967326G>A	uc001ioo.2	-	43	6612	c.6560C>T	c.(6559-6561)TCG>TTG	p.S2187L		NM_001081	NP_001072
PCDH15	65217	broad.mit.edu	37	10	55582066	55582066	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr10:55582066G>T	uc001jju.1	-	33	5815	c.5420C>A	c.(5419-5421)ACA>AAA	p.T1807K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.T1804K|PCDH15_uc010qhw.1_Missense_Mutation_p.T1767K|PCDH15_uc010qhx.1_Missense_Mutation_p.T1738K|PCDH15_uc010qhy.1_Missense_Mutation_p.T1814K|PCDH15_uc010qhz.1_Missense_Mutation_p.T1809K|PCDH15_uc010qia.1_Missense_Mutation_p.T1787K|PCDH15_uc010qib.1_Missense_Mutation_p.T1784K	NM_033056	NP_149045
C10orf93	255352	broad.mit.edu	37	10	134745669	134745669	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr10:134745669A>G	uc001llt.1	-							NM_173572	NP_775843
MUC2	4583	broad.mit.edu	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr11:1092947C>A	uc001lsx.1	+	31	11879	c.11852C>A	c.(11851-11853)ACC>AAC	p.T3951N		NM_002457	NP_002448
SWAP70	23075	broad.mit.edu	37	11	9726936	9726936	+	Intron	SNP	A	T	T			2011-2338:2012-306-T	g.chr11:9726936A>T	uc001mhw.2	+						SWAP70_uc001mhv.2_Intron|SWAP70_uc001mhx.2_Intron	NM_015055	NP_055870
SWAP70	23075	broad.mit.edu	37	11	9726942	9726942	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr11:9726942A>G	uc001mhw.2	+						SWAP70_uc001mhv.2_Intron|SWAP70_uc001mhx.2_Intron	NM_015055	NP_055870
OR8H2	390151	broad.mit.edu	37	11	55872844	55872844	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr11:55872844C>A	uc010riy.1	+	1	326	c.326C>A	c.(325-327)ACT>AAT	p.T109N		NM_001005200	NP_001005200
UBE4A	9354	broad.mit.edu	37	11	118230240	118230240	+	5'Flank	SNP	G	C	C			2011-2338:2012-306-T	g.chr11:118230240G>C	uc001psw.2	+						UBE4A_uc001psv.2_5'Flank	NM_004788	NP_004779
B4GALNT3	283358	broad.mit.edu	37	12	622306	622306	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr12:622306C>G	uc001qii.1	+							NM_173593	NP_775864
PIK3C2G	5288	broad.mit.edu	37	12	18435643	18435643	+	Missense_Mutation	SNP	G	A	A			2011-2338:2012-306-T	g.chr12:18435643G>A	uc001rdt.2	+	2	744	c.628G>A	c.(628-630)GGC>AGC	p.G210S	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.G210S|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561
PIK3C2G	5288	broad.mit.edu	37	12	18466791	18466791	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr12:18466791A>G	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron|PIK3C2G_uc010sib.1_Intron|PIK3C2G_uc010sic.1_Intron	NM_004570	NP_004561
PIK3C2G	5288	broad.mit.edu	37	12	18524193	18524193	+	Missense_Mutation	SNP	A	T	T			2011-2338:2012-306-T	g.chr12:18524193A>T	uc001rdt.2	+	12	1821	c.1705A>T	c.(1705-1707)ACC>TCC	p.T569S	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.T610S|PIK3C2G_uc010sic.1_Missense_Mutation_p.T388S	NM_004570	NP_004561
NAV3	89795	broad.mit.edu	37	12	78415719	78415719	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr12:78415719A>G	uc001syp.2	+						NAV3_uc001syo.2_Intron	NM_014903	NP_055718
TMEM132D	121256	broad.mit.edu	37	12	129559481	129559481	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr12:129559481G>T	uc009zyl.1	-	9	2567	c.2239C>A	c.(2239-2241)CAA>AAA	p.Q747K	TMEM132D_uc001uia.2_Missense_Mutation_p.Q285K	NM_133448	NP_597705
GPR133	283383	broad.mit.edu	37	12	131502436	131502436	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr12:131502436C>T	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
SLC7A1	6541	broad.mit.edu	37	13	30133626	30133626	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr13:30133626G>A	uc001uso.2	-							NM_003045	NP_003036
RB1	5925	broad.mit.edu	37	13	49039155	49039155	+	Nonsense_Mutation	SNP	A	T	T			2011-2338:2012-306-T	g.chr13:49039155A>T	uc001vcb.2	+	22	2399	c.2233A>T	c.(2233-2235)AAA>TAA	p.K745*		NM_000321	NP_000312
MYH6	4624	broad.mit.edu	37	14	23869407	23869407	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr14:23869407C>T	uc001wjv.2	-						MYH6_uc010akp.1_Missense_Mutation_p.A547T	NM_002471	NP_002462
GABRB3	2562	broad.mit.edu	37	15	26793020	26793020	+	Missense_Mutation	SNP	T	A	A			2011-2338:2012-306-T	g.chr15:26793020T>A	uc001zaz.2	-	9	1484	c.1342A>T	c.(1342-1344)ATA>TTA	p.I448L	GABRB3_uc010uae.1_Missense_Mutation_p.I363L|GABRB3_uc001zba.2_Missense_Mutation_p.I448L|GABRB3_uc001zbb.2_Missense_Mutation_p.I504L	NM_000814	NP_000805
GABRB3	2562	broad.mit.edu	37	15	26828438	26828438	+	Intron	SNP	T	C	C			2011-2338:2012-306-T	g.chr15:26828438T>C	uc001zaz.2	-						GABRB3_uc010uae.1_Intron|GABRB3_uc001zba.2_Intron|GABRB3_uc001zbb.2_Intron	NM_000814	NP_000805
HERC2	8924	broad.mit.edu	37	15	28375585	28375585	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr15:28375585G>A	uc001zbj.2	-							NM_004667	NP_004658
HERC2	8924	broad.mit.edu	37	15	28474573	28474573	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr15:28474573C>A	uc001zbj.2	-							NM_004667	NP_004658
MAPK8IP3	23162	broad.mit.edu	37	16	1789139	1789139	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr16:1789139G>A	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
MAPK8IP3	23162	broad.mit.edu	37	16	1789189	1789189	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr16:1789189G>A	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
MAPK8IP3	23162	broad.mit.edu	37	16	1789678	1789678	+	Intron	SNP	A	T	T			2011-2338:2012-306-T	g.chr16:1789678A>T	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
BTBD12	84464	broad.mit.edu	37	16	3658307	3658307	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr16:3658307C>T	uc002cvp.2	-						BTBD12_uc002cvq.1_Intron	NM_032444	NP_115820
FANCA	2175	broad.mit.edu	37	16	89851274	89851274	+	Silent	SNP	G	A	A			2011-2338:2012-306-T	g.chr16:89851274G>A	uc002fou.1	-	15	1500	c.1458C>T	c.(1456-1458)CCC>CCT	p.P486P	FANCA_uc010vpn.1_Silent_p.P486P	NM_000135	NP_000126
TCF25	22980	broad.mit.edu	37	16	89951123	89951123	+	Intron	SNP	C	T	T	rs144575725	by1000genomes	2011-2338:2012-306-T	g.chr16:89951123C>T	uc002fpb.2	+						TCF25_uc002fpc.2_Intron	NM_014972	NP_055787
NLRP1	22861	broad.mit.edu	37	17	5448901	5448901	+	Intron	SNP	T	C	C			2011-2338:2012-306-T	g.chr17:5448901T>C	uc002gci.2	-						NLRP1_uc002gcg.1_Intron|NLRP1_uc002gck.2_Intron|NLRP1_uc002gcj.2_Intron|NLRP1_uc002gcl.2_Intron|NLRP1_uc002gch.3_Intron|NLRP1_uc010clh.2_Intron	NM_033004	NP_127497
CLEC10A	10462	broad.mit.edu	37	17	6980741	6980741	+	Intron	SNP	T	C	C	rs79869096	by1000genomes	2011-2338:2012-306-T	g.chr17:6980741T>C	uc002gek.2	-						CLEC10A_uc002gej.2_Intron|CLEC10A_uc002gel.2_Intron|CLEC10A_uc010clv.1_Intron	NM_182906	NP_878910
TP53	7157	broad.mit.edu	37	17	7577105	7577105	+	Missense_Mutation	SNP	G	A	A			2011-2338:2012-306-T	g.chr17:7577105G>A	uc002gim.2	-	8	1027	c.833C>T	c.(832-834)CCT>CTT	p.P278L	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.P278L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P146L|TP53_uc010cng.1_Missense_Mutation_p.P146L|TP53_uc002gii.1_Missense_Mutation_p.P146L|TP53_uc010cnh.1_Missense_Mutation_p.P278L|TP53_uc010cni.1_Missense_Mutation_p.P278L|TP53_uc002gij.2_Missense_Mutation_p.P278L	NM_001126112	NP_001119584
MYH8	4626	broad.mit.edu	37	17	10323319	10323319	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr17:10323319C>G	uc002gmm.2	-						uc002gml.1_Intron	NM_002472	NP_002463
NCOR1	9611	broad.mit.edu	37	17	15983992	15983992	+	Missense_Mutation	SNP	T	G	G			2011-2338:2012-306-T	g.chr17:15983992T>G	uc002gpo.2	-	24	3467	c.3227A>C	c.(3226-3228)CAA>CCA	p.Q1076P	NCOR1_uc002gpn.2_Missense_Mutation_p.Q1092P|NCOR1_uc002gpp.1_Missense_Mutation_p.Q983P|NCOR1_uc010vwb.1_5'Flank|NCOR1_uc010coy.2_5'Flank|NCOR1_uc010vwc.1_5'Flank	NM_006311	NP_006302
KRTAP1-1	81851	broad.mit.edu	37	17	39197485	39197485	+	Silent	SNP	A	G	G			2011-2338:2012-306-T	g.chr17:39197485A>G	uc002hvw.1	-	1	229	c.165T>C	c.(163-165)TGT>TGC	p.C55C		NM_030967	NP_112229
KRTAP4-3	85290	broad.mit.edu	37	17	39324254	39324254	+	Silent	SNP	G	A	A			2011-2338:2012-306-T	g.chr17:39324254G>A	uc010cxl.2	-	1	171	c.171C>T	c.(169-171)TCC>TCT	p.S57S		NM_033187	NP_149443
GOSR2	9570	broad.mit.edu	37	17	45095190	45095190	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr17:45095190A>G	uc010wkh.1	+						uc010wki.1_5'Flank	NM_004287	NP_004278
ABCA9	10350	broad.mit.edu	37	17	67020469	67020469	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr17:67020469G>T	uc002jhu.2	-	17	2310	c.2167C>A	c.(2167-2169)CCA>ACA	p.P723T	ABCA9_uc010dez.2_Missense_Mutation_p.P723T	NM_080283	NP_525022
ABCA6	23460	broad.mit.edu	37	17	67079048	67079048	+	Silent	SNP	G	A	A			2011-2338:2012-306-T	g.chr17:67079048G>A	uc002jhw.1	-	36	4757	c.4582C>T	c.(4582-4584)CTG>TTG	p.L1528L		NM_080284	NP_525023
DLGAP1	9229	broad.mit.edu	37	18	3741307	3741307	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr18:3741307C>G	uc002kmf.2	-						DLGAP1_uc010wyz.1_Intron|DLGAP1_uc002kme.1_Intron|DLGAP1_uc010dkn.2_Intron|DLGAP1_uc010wyw.1_Intron|DLGAP1_uc010wyx.1_Intron|DLGAP1_uc010wyy.1_Intron|DLGAP1_uc002kmg.2_Intron|DLGAP1_uc002kmk.2_Intron	NM_004746	NP_004737
LAMA1	284217	broad.mit.edu	37	18	6950889	6950889	+	Silent	SNP	G	A	A			2011-2338:2012-306-T	g.chr18:6950889G>A	uc002knm.2	-	58	8383	c.8289C>T	c.(8287-8289)TAC>TAT	p.Y2763Y	LAMA1_uc002knk.2_Silent_p.Y93Y|LAMA1_uc002knl.2_Silent_p.Y216Y|LAMA1_uc010wzj.1_Silent_p.Y2239Y	NM_005559	NP_005550
LAMA1	284217	broad.mit.edu	37	18	6986065	6986065	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr18:6986065C>T	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
CABLES1	91768	broad.mit.edu	37	18	20798456	20798456	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr18:20798456C>G	uc002kuc.2	+						C18orf45_uc010xaq.1_Intron|CABLES1_uc002kub.2_Intron|CABLES1_uc002kud.2_Intron	NM_001100619	NP_001094089
ZNF521	25925	broad.mit.edu	37	18	22806963	22806963	+	Missense_Mutation	SNP	C	G	G			2011-2338:2012-306-T	g.chr18:22806963C>G	uc002kvk.2	-	4	1166	c.919G>C	c.(919-921)GAG>CAG	p.E307Q	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.E307Q|ZNF521_uc002kvl.2_Missense_Mutation_p.E87Q	NM_015461	NP_056276
SMAD4	4089	broad.mit.edu	37	18	48573196	48573196	+	Intron	SNP	G	C	C			2011-2338:2012-306-T	g.chr18:48573196G>C	uc010xdp.1	+						SMAD4_uc010xdo.1_Intron	NM_005359	NP_005350
PARD6G	84552	broad.mit.edu	37	18	77942378	77942378	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr18:77942378G>A	uc002lny.2	-						PARD6G_uc010xfp.1_Intron	NM_032510	NP_115899
FZR1	51343	broad.mit.edu	37	19	3530498	3530498	+	Intron	SNP	A	G	G	rs28454918	by1000genomes	2011-2338:2012-306-T	g.chr19:3530498A>G	uc010dtk.2	+						FZR1_uc002lxt.2_Intron|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670
FZR1	51343	broad.mit.edu	37	19	3530517	3530517	+	Intron	SNP	T	C	C	rs28479489	by1000genomes	2011-2338:2012-306-T	g.chr19:3530517T>C	uc010dtk.2	+						FZR1_uc002lxt.2_Intron|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670
KEAP1	9817	broad.mit.edu	37	19	10602328	10602328	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr19:10602328C>A	uc002moq.1	-	3	1406	c.1250G>T	c.(1249-1251)GGG>GTG	p.G417V	KEAP1_uc002mop.1_Missense_Mutation_p.G135V|KEAP1_uc002mor.1_Missense_Mutation_p.G417V	NM_012289	NP_036421
ZNF440	126070	broad.mit.edu	37	19	11943309	11943309	+	Missense_Mutation	SNP	C	G	G			2011-2338:2012-306-T	g.chr19:11943309C>G	uc002msp.1	+	4	1474	c.1318C>G	c.(1318-1320)CAA>GAA	p.Q440E		NM_152357	NP_689570
ZNF433	163059	broad.mit.edu	37	19	12126239	12126239	+	Missense_Mutation	SNP	C	G	G			2011-2338:2012-306-T	g.chr19:12126239C>G	uc002msy.1	-	4	1614	c.1443G>C	c.(1441-1443)AAG>AAC	p.K481N	uc002msx.1_Intron|ZNF433_uc002msz.1_Missense_Mutation_p.K446N	NM_001080411	NP_001073880
AKT2	208	broad.mit.edu	37	19	40754718	40754718	+	Intron	SNP	G	A	A	rs111407903	by1000genomes	2011-2338:2012-306-T	g.chr19:40754718G>A	uc002onf.2	-						AKT2_uc010egs.2_Intron|AKT2_uc010egt.2_Intron|AKT2_uc010xvj.1_Intron|AKT2_uc010egu.1_Intron|AKT2_uc010xvk.1_Intron	NM_001626	NP_001617
TPRX1	284355	broad.mit.edu	37	19	48305286	48305286	+	Missense_Mutation	SNP	G	C	C			2011-2338:2012-306-T	g.chr19:48305286G>C	uc002php.1	-	2	1053	c.982C>G	c.(982-984)CCA>GCA	p.P328A		NM_198479	NP_940881
CACNG7	59284	broad.mit.edu	37	19	54427233	54427233	+	Intron	SNP	G	T	T			2011-2338:2012-306-T	g.chr19:54427233G>T	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
CACNG7	59284	broad.mit.edu	37	19	54427242	54427242	+	Intron	SNP	C	T	T	rs74973062		2011-2338:2012-306-T	g.chr19:54427242C>T	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
RMND5A	64795	broad.mit.edu	37	2	87015704	87015704	+	Intron	SNP	G	C	C			2011-2338:2012-306-T	g.chr2:87015704G>C	uc002srs.3	+						CD8A_uc002srv.2_Intron|CD8A_uc010ytn.1_Intron|CD8A_uc002srt.2_Intron|CD8A_uc002sru.2_Intron		
RMND5A	64795	broad.mit.edu	37	2	87015825	87015825	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr2:87015825G>A	uc002srs.3	+						CD8A_uc002srv.2_Intron|CD8A_uc010ytn.1_Intron|CD8A_uc002srt.2_Intron|CD8A_uc002sru.2_Intron		
RMND5A	64795	broad.mit.edu	37	2	87625035	87625035	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr2:87625035C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87625296	87625296	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr2:87625296C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87633478	87633478	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr2:87633478C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644174	87644174	+	Intron	SNP	G	C	C			2011-2338:2012-306-T	g.chr2:87644174G>C	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141751609	141751609	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr2:141751609C>A	uc002tvj.1	-	16	3571	c.2599G>T	c.(2599-2601)GAC>TAC	p.D867Y	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179452415	179452415	+	Silent	SNP	A	G	G			2011-2338:2012-306-T	g.chr2:179452415A>G	uc010zfg.1	-	255	56141	c.55917T>C	c.(55915-55917)ACT>ACC	p.T18639T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T12334T|TTN_uc010zfi.1_Silent_p.T12267T|TTN_uc010zfj.1_Silent_p.T12142T	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179465541	179465541	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr2:179465541C>T	uc010zfg.1	-						uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179485809	179485809	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr2:179485809A>G	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179589006	179589006	+	Silent	SNP	T	C	C			2011-2338:2012-306-T	g.chr2:179589006T>C	uc010zfg.1	-	69	17588	c.17364A>G	c.(17362-17364)ACA>ACG	p.T5788T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.T2449T	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179595453	179595453	+	Missense_Mutation	SNP	A	G	G			2011-2338:2012-306-T	g.chr2:179595453A>G	uc010zfg.1	-	58	14299	c.14075T>C	c.(14074-14076)ATT>ACT	p.I4692T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.I1353T	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179613018	179613018	+	Missense_Mutation	SNP	T	A	A			2011-2338:2012-306-T	g.chr2:179613018T>A	uc002unb.2	-	46	14333	c.14109A>T	c.(14107-14109)GAA>GAT	p.E4703D	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870
PMS1	5378	broad.mit.edu	37	2	190719015	190719015	+	Silent	SNP	A	G	G			2011-2338:2012-306-T	g.chr2:190719015A>G	uc002urh.3	+	9	1546	c.1017A>G	c.(1015-1017)CCA>CCG	p.P339P	PMS1_uc010zga.1_Silent_p.P300P|PMS1_uc010zgb.1_Silent_p.P278P|PMS1_uc002urk.3_Silent_p.P300P|PMS1_uc002uri.3_Silent_p.P339P|PMS1_uc010zgc.1_Silent_p.P163P|PMS1_uc010zgd.1_Silent_p.P163P|PMS1_uc002urj.2_RNA|PMS1_uc010fry.1_Silent_p.P300P|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Silent_p.P124P|PMS1_uc002urm.2_RNA|PMS1_uc002urn.1_Silent_p.P7P	NM_000534	NP_000525
ERBB4	2066	broad.mit.edu	37	2	212285401	212285401	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr2:212285401G>A	uc002veg.1	-						ERBB4_uc002veh.1_Intron|ERBB4_uc010zji.1_Intron|ERBB4_uc010zjj.1_Intron	NM_005235	NP_005226
ERBB4	2066	broad.mit.edu	37	2	212288987	212288987	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr2:212288987G>T	uc002veg.1	-	23	2857	c.2759C>A	c.(2758-2760)CCC>CAC	p.P920H	ERBB4_uc002veh.1_Missense_Mutation_p.P920H|ERBB4_uc010zji.1_Missense_Mutation_p.P910H|ERBB4_uc010zjj.1_Missense_Mutation_p.P910H	NM_005235	NP_005226
ABCA12	26154	broad.mit.edu	37	2	215819962	215819962	+	Silent	SNP	C	T	T			2011-2338:2012-306-T	g.chr2:215819962C>T	uc002vew.2	-	43	6577	c.6357G>A	c.(6355-6357)GTG>GTA	p.V2119V	ABCA12_uc002vev.2_Silent_p.V1801V|ABCA12_uc010zjn.1_Silent_p.V1046V	NM_173076	NP_775099
PLCB1	23236	broad.mit.edu	37	20	8862274	8862274	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr20:8862274G>T	uc002wnb.2	+	32	3432	c.3429G>T	c.(3427-3429)CAG>CAT	p.Q1143H	PLCB1_uc002wna.2_3'UTR	NM_015192	NP_056007
DSCAM	1826	broad.mit.edu	37	21	41741227	41741227	+	Intron	SNP	A	C	C			2011-2338:2012-306-T	g.chr21:41741227A>C	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
PTTG1IP	754	broad.mit.edu	37	21	46283027	46283027	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr21:46283027C>G	uc002zgb.1	-						PTTG1IP_uc011afj.1_Intron|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330
CLTCL1	8218	broad.mit.edu	37	22	19183743	19183743	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr22:19183743C>A	uc002zpb.2	-						CLTCL1_uc011agv.1_Intron|CLTCL1_uc011agw.1_Intron|CLTCL1_uc011agt.1_Intron|CLTCL1_uc011agu.1_Intron	NM_007098	NP_009029
KREMEN1	83999	broad.mit.edu	37	22	29516225	29516225	+	Intron	SNP	G	T	T			2011-2338:2012-306-T	g.chr22:29516225G>T	uc011akm.1	+						KREMEN1_uc003ael.2_Intron|KREMEN1_uc011akn.1_Intron	NM_032045	NP_114434
FAM19A5	25817	broad.mit.edu	37	22	48980732	48980732	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr22:48980732C>A	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
CNTN6	27255	broad.mit.edu	37	3	1189628	1189628	+	5'UTR	SNP	T	A	A			2011-2338:2012-306-T	g.chr3:1189628T>A	uc003boz.2	+	2					CNTN6_uc010hbo.2_5'UTR|CNTN6_uc011asj.1_Intron|CNTN6_uc003bpa.2_5'UTR	NM_014461	NP_055276
CNTN6	27255	broad.mit.edu	37	3	1443248	1443248	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr3:1443248C>T	uc003boz.2	+						CNTN6_uc011asj.1_Intron|CNTN6_uc003bpa.2_Intron	NM_014461	NP_055276
XPC	7508	broad.mit.edu	37	3	14187637	14187637	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr3:14187637G>T	uc011ave.1	-	16	2731	c.2627C>A	c.(2626-2628)ACA>AAA	p.T876K	XPC_uc011avf.1_Missense_Mutation_p.T683K|XPC_uc011avg.1_Missense_Mutation_p.T839K	NM_004628	NP_004619
PIK3CB	5291	broad.mit.edu	37	3	138409846	138409846	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr3:138409846G>T	uc011bmq.1	-	13	2032	c.2032C>A	c.(2032-2034)CTT>ATT	p.L678I	PIK3CB_uc011bmn.1_Missense_Mutation_p.L190I|PIK3CB_uc011bmo.1_Missense_Mutation_p.L124I|PIK3CB_uc011bmp.1_Missense_Mutation_p.L265I	NM_006219	NP_006210
ZIC1	7545	broad.mit.edu	37	3	147128802	147128802	+	Silent	SNP	C	A	A			2011-2338:2012-306-T	g.chr3:147128802C>A	uc003ewe.2	+	1	1622	c.903C>A	c.(901-903)CCC>CCA	p.P301P		NM_003412	NP_003403
SI	6476	broad.mit.edu	37	3	164737493	164737493	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr3:164737493G>T	uc003fei.2	-	28	3382	c.3320C>A	c.(3319-3321)CCA>CAA	p.P1107Q		NM_001041	NP_001032
MUC4	4585	broad.mit.edu	37	3	195503135	195503135	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr3:195503135C>T	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
MUC4	4585	broad.mit.edu	37	3	195503573	195503573	+	Intron	SNP	A	T	T			2011-2338:2012-306-T	g.chr3:195503573A>T	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
MUC4	4585	broad.mit.edu	37	3	195504784	195504784	+	Intron	SNP	A	G	G	rs55764966	by1000genomes	2011-2338:2012-306-T	g.chr3:195504784A>G	uc011bto.1	-						MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
PCYT1A	5130	broad.mit.edu	37	3	195977106	195977106	+	Intron	SNP	G	T	T			2011-2338:2012-306-T	g.chr3:195977106G>T	uc003fwg.2	-						PCYT1A_uc003fwh.2_Intron	NM_005017	NP_005008
PDGFRA	5156	broad.mit.edu	37	4	55129751	55129751	+	Intron	SNP	T	C	C			2011-2338:2012-306-T	g.chr4:55129751T>C	uc003han.3	+						PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_Intron|PDGFRA_uc010igq.1_Intron|PDGFRA_uc003ham.2_Intron	NM_006206	NP_006197
GC	2638	broad.mit.edu	37	4	72669661	72669661	+	Missense_Mutation	SNP	C	A	A	rs76781122	byFrequency;by1000genomes	2011-2338:2012-306-T	g.chr4:72669661C>A	uc010iif.2	-	1	98	c.3G>T	c.(1-3)ATG>ATT	p.M1I		NM_000583	NP_000574
TET2	54790	broad.mit.edu	37	4	106159369	106159369	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr4:106159369C>G	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron|TET2_uc010ilp.1_Intron|TET2_uc003hxi.1_3'UTR	NM_001127208	NP_001120680
TET2	54790	broad.mit.edu	37	4	106161526	106161526	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr4:106161526C>G	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron|TET2_uc010ilp.1_Intron|TET2_uc003hxi.1_3'UTR	NM_001127208	NP_001120680
INPP4B	8821	broad.mit.edu	37	4	143044490	143044490	+	Missense_Mutation	SNP	T	A	A			2011-2338:2012-306-T	g.chr4:143044490T>A	uc003iix.3	-	21	2567	c.1972A>T	c.(1972-1974)ACA>TCA	p.T658S	INPP4B_uc003iiw.3_Missense_Mutation_p.T658S|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Missense_Mutation_p.T473S|INPP4B_uc011cho.1_RNA|INPP4B_uc011chp.1_Missense_Mutation_p.T529S	NM_003866	NP_003857
AHRR	57491	broad.mit.edu	37	5	392390	392390	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr5:392390C>G	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
CLPTM1L	81037	broad.mit.edu	37	5	1326682	1326682	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr5:1326682C>G	uc003jch.2	-						CLPTM1L_uc003jcg.2_Intron	NM_030782	NP_110409
DNAH5	1767	broad.mit.edu	37	5	13777450	13777450	+	Nonsense_Mutation	SNP	G	C	C			2011-2338:2012-306-T	g.chr5:13777450G>C	uc003jfd.2	-	54	9008	c.8966C>G	c.(8965-8967)TCA>TGA	p.S2989*		NM_001369	NP_001360
DNAH5	1767	broad.mit.edu	37	5	13814976	13814976	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr5:13814976G>A	uc003jfd.2	-							NM_001369	NP_001360
DNAH5	1767	broad.mit.edu	37	5	13844918	13844918	+	Intron	SNP	G	T	T			2011-2338:2012-306-T	g.chr5:13844918G>T	uc003jfd.2	-							NM_001369	NP_001360
TRIO	7204	broad.mit.edu	37	5	14364753	14364753	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr5:14364753C>A	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc011cna.1_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
FAM134B	54463	broad.mit.edu	37	5	16535853	16535853	+	Intron	SNP	A	G	G	rs70938059		2011-2338:2012-306-T	g.chr5:16535853A>G	uc003jfs.2	-							NM_001034850	NP_001030022
CDH12	1010	broad.mit.edu	37	5	22078860	22078860	+	5'UTR	SNP	G	C	C			2011-2338:2012-306-T	g.chr5:22078860G>C	uc010iuc.2	-	2					CDH12_uc011cno.1_5'UTR|CDH12_uc003jgk.2_5'UTR	NM_004061	NP_004052
PRDM9	56979	broad.mit.edu	37	5	23527278	23527278	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr5:23527278G>T	uc003jgo.2	+	11	2263	c.2081G>T	c.(2080-2082)TGC>TTC	p.C694F		NM_020227	NP_064612
PRDM9	56979	broad.mit.edu	37	5	23527614	23527614	+	Missense_Mutation	SNP	G	T	T			2011-2338:2012-306-T	g.chr5:23527614G>T	uc003jgo.2	+	11	2599	c.2417G>T	c.(2416-2418)TGC>TTC	p.C806F		NM_020227	NP_064612
CDH10	1008	broad.mit.edu	37	5	24491686	24491686	+	Silent	SNP	C	A	A			2011-2338:2012-306-T	g.chr5:24491686C>A	uc003jgr.1	-	11	2207	c.1875G>T	c.(1873-1875)CTG>CTT	p.L625L	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718
ADAMTS12	81792	broad.mit.edu	37	5	33627305	33627305	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr5:33627305G>A	uc003jia.1	-						ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217
RASGEF1C	255426	broad.mit.edu	37	5	179539898	179539898	+	Intron	SNP	G	T	T			2011-2338:2012-306-T	g.chr5:179539898G>T	uc003mlq.2	-						RASGEF1C_uc003mlr.2_Intron|RASGEF1C_uc003mlp.3_Intron	NM_175062	NP_778232
PKHD1	5314	broad.mit.edu	37	6	51893021	51893021	+	Missense_Mutation	SNP	G	A	A			2011-2338:2012-306-T	g.chr6:51893021G>A	uc003pah.1	-	30	3769	c.3493C>T	c.(3493-3495)CCC>TCC	p.P1165S	PKHD1_uc003pai.2_Missense_Mutation_p.P1165S	NM_138694	NP_619639
DST	667	broad.mit.edu	37	6	56480384	56480384	+	Intron	SNP	T	A	A			2011-2338:2012-306-T	g.chr6:56480384T>A	uc003pdf.2	-						DST_uc003pcz.3_Intron|DST_uc011dxj.1_Intron|DST_uc011dxk.1_Intron|DST_uc003pcy.3_Intron|DST_uc003pdb.2_Intron|DST_uc003pdc.3_Silent_p.T2627T	NM_001144769	NP_001138241
ROS1	6098	broad.mit.edu	37	6	117683613	117683613	+	Intron	SNP	A	G	G			2011-2338:2012-306-T	g.chr6:117683613A>G	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117709266	117709266	+	Intron	SNP	G	T	T			2011-2338:2012-306-T	g.chr6:117709266G>T	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
SYNE1	23345	broad.mit.edu	37	6	152457906	152457906	+	Missense_Mutation	SNP	G	C	C			2011-2338:2012-306-T	g.chr6:152457906G>C	uc010kiw.2	-	141	26108	c.25506C>G	c.(25504-25506)ATC>ATG	p.I8502M	SYNE1_uc010kiv.2_Missense_Mutation_p.I3026M|SYNE1_uc003qos.3_Missense_Mutation_p.I3026M|SYNE1_uc003qot.3_Missense_Mutation_p.I8454M|SYNE1_uc003qou.3_Missense_Mutation_p.I8502M|SYNE1_uc003qop.3_Missense_Mutation_p.I687M|SYNE1_uc011eez.1_Missense_Mutation_p.I704M|SYNE1_uc003qoq.3_Missense_Mutation_p.I704M|SYNE1_uc003qor.3_Missense_Mutation_p.I1425M	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152532741	152532741	+	Intron	SNP	G	T	T			2011-2338:2012-306-T	g.chr6:152532741G>T	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152542145	152542145	+	Silent	SNP	T	C	C			2011-2338:2012-306-T	g.chr6:152542145T>C	uc010kiw.2	-	119	22295	c.21693A>G	c.(21691-21693)CTA>CTG	p.L7231L	SYNE1_uc010kiv.2_Silent_p.L1755L|SYNE1_uc003qos.3_Silent_p.L1755L|SYNE1_uc003qot.3_Silent_p.L7160L|SYNE1_uc003qou.3_Silent_p.L7231L|SYNE1_uc003qor.3_Silent_p.L131L	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152647344	152647344	+	Intron	SNP	G	T	T	rs111613513		2011-2338:2012-306-T	g.chr6:152647344G>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kiz.2_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152751766	152751766	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr6:152751766C>A	uc010kiw.2	-	35	5142	c.4540G>T	c.(4540-4542)GTT>TTT	p.V1514F	SYNE1_uc003qot.3_Missense_Mutation_p.V1521F|SYNE1_uc003qou.3_Missense_Mutation_p.V1514F|SYNE1_uc010kjb.1_Missense_Mutation_p.V1497F|SYNE1_uc003qow.2_Missense_Mutation_p.V809F	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152804382	152804382	+	Silent	SNP	G	C	C			2011-2338:2012-306-T	g.chr6:152804382G>C	uc010kiw.2	-	14	1790	c.1188C>G	c.(1186-1188)CTC>CTG	p.L396L	SYNE1_uc003qot.3_Silent_p.L403L|SYNE1_uc003qou.3_Silent_p.L396L|SYNE1_uc010kjb.1_Silent_p.L379L|SYNE1_uc003qpa.1_Silent_p.L396L|SYNE1_uc003qox.1_5'UTR	NM_182961	NP_892006
C6orf35	729515	broad.mit.edu	37	6	157731943	157731943	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr6:157731943C>T	uc003sih.3	-							NM_018452	NP_060922
TCP10	6953	broad.mit.edu	37	6	167800415	167800415	+	5'Flank	SNP	G	A	A			2011-2338:2012-306-T	g.chr6:167800415G>A	uc003qvv.1	-						TCP10_uc003qvu.2_5'Flank|TCP10_uc003qvw.2_5'Flank	NM_004610	NP_004601
SMOC2	64094	broad.mit.edu	37	6	169025457	169025457	+	Intron	SNP	A	T	T			2011-2338:2012-306-T	g.chr6:169025457A>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_Intron	NM_022138	NP_071421
GET4	51608	broad.mit.edu	37	7	929500	929500	+	Intron	SNP	T	C	C			2011-2338:2012-306-T	g.chr7:929500T>C	uc003sjl.1	+						GET4_uc003sjj.1_Intron	NM_015949	NP_057033
GET4	51608	broad.mit.edu	37	7	929967	929967	+	Intron	SNP	C	T	T	rs10237124		2011-2338:2012-306-T	g.chr7:929967C>T	uc003sjl.1	+						GET4_uc003sjj.1_Intron	NM_015949	NP_057033
ETV1	2115	broad.mit.edu	37	7	13971037	13971037	+	Intron	SNP	G	C	C			2011-2338:2012-306-T	g.chr7:13971037G>C	uc011jxq.1	-						ETV1_uc011jxn.1_Intron|ETV1_uc011jxo.1_Intron|ETV1_uc011jxp.1_Intron|ETV1_uc003ssw.3_Intron|ETV1_uc003ssx.2_Intron|ETV1_uc011jxr.1_Intron|ETV1_uc011jxs.1_Intron|ETV1_uc010ktv.2_Intron	NM_004956	NP_004947
VPS41	27072	broad.mit.edu	37	7	38783002	38783002	+	Missense_Mutation	SNP	G	A	A			2011-2338:2012-306-T	g.chr7:38783002G>A	uc003tgy.2	-	24	2148	c.2122C>T	c.(2122-2124)CCA>TCA	p.P708S	VPS41_uc003tgz.2_Missense_Mutation_p.P683S|VPS41_uc010kxn.2_Missense_Mutation_p.P619S|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211
ZNF804B	219578	broad.mit.edu	37	7	88964094	88964094	+	Missense_Mutation	SNP	A	T	T			2011-2338:2012-306-T	g.chr7:88964094A>T	uc011khi.1	+	4	2336	c.1798A>T	c.(1798-1800)AAC>TAC	p.N600Y		NM_181646	NP_857597
COL1A2	1278	broad.mit.edu	37	7	94038838	94038838	+	Intron	SNP	A	T	T			2011-2338:2012-306-T	g.chr7:94038838A>T	uc003ung.1	+						COL1A2_uc011kib.1_Intron	NM_000089	NP_000080
RELN	5649	broad.mit.edu	37	7	103159827	103159827	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr7:103159827C>A	uc003vca.2	-	49	7965	c.7805G>T	c.(7804-7806)GGA>GTA	p.G2602V	RELN_uc010liz.2_Missense_Mutation_p.G2602V	NM_005045	NP_005036
SRPK2	6733	broad.mit.edu	37	7	104766769	104766769	+	Missense_Mutation	SNP	A	G	G			2011-2338:2012-306-T	g.chr7:104766769A>G	uc003vct.2	-	14	1995	c.1808T>C	c.(1807-1809)ATA>ACA	p.I603T	SRPK2_uc003vcu.2_Missense_Mutation_p.I603T|SRPK2_uc003vcv.2_Missense_Mutation_p.I614T|SRPK2_uc003vcs.1_RNA	NM_182691	NP_872633
PIK3CG	5294	broad.mit.edu	37	7	106545580	106545580	+	Silent	SNP	C	T	T			2011-2338:2012-306-T	g.chr7:106545580C>T	uc003vdv.3	+	11	3142	c.3057C>T	c.(3055-3057)GCC>GCT	p.A1019A	PIK3CG_uc003vdu.2_Silent_p.A1019A|PIK3CG_uc003vdw.2_Silent_p.A1019A	NM_002649	NP_002640
SLC26A3	1811	broad.mit.edu	37	7	107423147	107423147	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr7:107423147C>T	uc003ver.2	-						SLC26A3_uc003ves.2_Intron	NM_000111	NP_000102
KIAA1549	57670	broad.mit.edu	37	7	138602025	138602025	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr7:138602025C>A	uc011kql.1	-	2	2396	c.2347G>T	c.(2347-2349)GGG>TGG	p.G783W	KIAA1549_uc003vuk.3_Missense_Mutation_p.G733W|KIAA1549_uc011kqj.1_Missense_Mutation_p.G783W	NM_020910	NP_065961
CNTNAP2	26047	broad.mit.edu	37	7	146536935	146536935	+	Missense_Mutation	SNP	G	A	A			2011-2338:2012-306-T	g.chr7:146536935G>A	uc003weu.1	+	3	857	c.341G>A	c.(340-342)CGG>CAG	p.R114Q		NM_014141	NP_054860
CNTNAP2	26047	broad.mit.edu	37	7	148028756	148028756	+	Intron	SNP	T	C	C			2011-2338:2012-306-T	g.chr7:148028756T>C	uc003weu.1	+							NM_014141	NP_054860
PTPRN2	5799	broad.mit.edu	37	7	157373597	157373597	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr7:157373597C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157660017	157660017	+	Intron	SNP	T	C	C			2011-2338:2012-306-T	g.chr7:157660017T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157852463	157852463	+	Intron	SNP	T	C	C			2011-2338:2012-306-T	g.chr7:157852463T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157944062	157944062	+	Intron	SNP	T	C	C	rs150204556	by1000genomes	2011-2338:2012-306-T	g.chr7:157944062T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158063724	158063724	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr7:158063724C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158295597	158295597	+	Intron	SNP	C	A	A			2011-2338:2012-306-T	g.chr7:158295597C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ZFHX4	79776	broad.mit.edu	37	8	77767726	77767726	+	Missense_Mutation	SNP	A	T	T			2011-2338:2012-306-T	g.chr8:77767726A>T	uc003yav.2	+	10	8821	c.8434A>T	c.(8434-8436)ACG>TCG	p.T2812S	ZFHX4_uc003yau.1_Missense_Mutation_p.T2857S|ZFHX4_uc003yaw.1_Missense_Mutation_p.T2812S	NM_024721	NP_078997
MMP16	4325	broad.mit.edu	37	8	89209566	89209566	+	Intron	SNP	C	T	T			2011-2338:2012-306-T	g.chr8:89209566C>T	uc003yeb.3	-						MMP16_uc003yec.2_Intron	NM_005941	NP_005932
CSMD3	114788	broad.mit.edu	37	8	113323367	113323367	+	Silent	SNP	T	A	A			2011-2338:2012-306-T	g.chr8:113323367T>A	uc003ynu.2	-	50	7884	c.7725A>T	c.(7723-7725)CCA>CCT	p.P2575P	CSMD3_uc003yns.2_Silent_p.P1777P|CSMD3_uc003ynt.2_Silent_p.P2535P|CSMD3_uc011lhx.1_Silent_p.P2471P|CSMD3_uc003ynw.1_Silent_p.P286P	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113841929	113841929	+	Silent	SNP	C	T	T			2011-2338:2012-306-T	g.chr8:113841929C>T	uc003ynu.2	-	12	2004	c.1845G>A	c.(1843-1845)AGG>AGA	p.R615R	CSMD3_uc003ynt.2_Silent_p.R575R|CSMD3_uc011lhx.1_Silent_p.R511R	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113933832	113933832	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chr8:113933832G>A	uc003ynu.2	-						CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
ZFP41	286128	broad.mit.edu	37	8	144342202	144342202	+	3'UTR	SNP	G	C	C			2011-2338:2012-306-T	g.chr8:144342202G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
HEATR7A	727957	broad.mit.edu	37	8	145288295	145288295	+	Intron	SNP	C	A	A	rs11779369		2011-2338:2012-306-T	g.chr8:145288295C>A	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
ADCK5	203054	broad.mit.edu	37	8	145596602	145596602	+	5'Flank	SNP	C	T	T			2011-2338:2012-306-T	g.chr8:145596602C>T	uc003zch.2	+						ADCK5_uc003zcg.2_5'Flank	NM_174922	NP_777582
JAK2	3717	broad.mit.edu	37	9	5066748	5066748	+	Missense_Mutation	SNP	C	A	A			2011-2338:2012-306-T	g.chr9:5066748C>A	uc010mhm.2	+	9	1398	c.1285C>A	c.(1285-1287)CCT>ACT	p.P429T	JAK2_uc003ziw.2_Missense_Mutation_p.P429T	NM_004972	NP_004963
NOTCH1	4851	broad.mit.edu	37	9	139418017	139418017	+	Intron	SNP	C	G	G			2011-2338:2012-306-T	g.chr9:139418017C>G	uc004chz.2	-							NM_017617	NP_060087
PNPLA7	375775	broad.mit.edu	37	9	140411825	140411825	+	Intron	SNP	T	C	C			2011-2338:2012-306-T	g.chr9:140411825T>C	uc004cnf.2	-						PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Intron	NM_152286	NP_689499
PLCXD1	55344	broad.mit.edu	37	X	197062	197062	+	5'Flank	SNP	A	G	G			2011-2338:2012-306-T	g.chrX:197062A>G	uc004cpc.2	+						PLCXD1_uc011mgx.1_Intron	NM_018390	NP_060860
CSF2RA	1438	broad.mit.edu	37	X	1412738	1412738	+	Intron	SNP	G	A	A			2011-2338:2012-306-T	g.chrX:1412738G>A	uc010nct.2	+						CSF2RA_uc011mhb.1_Intron|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Intron|CSF2RA_uc004cpo.2_Intron|CSF2RA_uc010ncu.2_Intron|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_Intron|CSF2RA_uc004cpr.2_Intron	NM_001161529	NP_001155001
C1orf173	127254	broad.mit.edu	37	1	75038600	75038600	+	Missense_Mutation	SNP	C	T	T			2011-2339:2012-305-T	g.chr1:75038600C>T	uc001dgg.2	-	14	3013	c.2794G>A	c.(2794-2796)GAG>AAG	p.E932K		NM_001002912	NP_001002912
C1orf173	127254	broad.mit.edu	37	1	75038869	75038869	+	Missense_Mutation	SNP	G	T	T			2011-2339:2012-305-T	g.chr1:75038869G>T	uc001dgg.2	-	14	2744	c.2525C>A	c.(2524-2526)GCA>GAA	p.A842E		NM_001002912	NP_001002912
SPAG17	200162	broad.mit.edu	37	1	118539202	118539202	+	Intron	SNP	T	G	G			2011-2339:2012-305-T	g.chr1:118539202T>G	uc001ehk.2	-							NM_206996	NP_996879
FAM5B	57795	broad.mit.edu	37	1	177140473	177140473	+	5'Flank	SNP	T	A	A			2011-2339:2012-305-T	g.chr1:177140473T>A	uc001glf.2	+							NM_021165	NP_066988
SFMBT2	57713	broad.mit.edu	37	10	7325814	7325814	+	Intron	SNP	T	C	C			2011-2339:2012-305-T	g.chr10:7325814T>C	uc009xio.1	-						SFMBT2_uc001ijn.1_Intron|SFMBT2_uc010qay.1_Intron	NM_001029880	NP_001025051
OR51S1	119692	broad.mit.edu	37	11	4870107	4870107	+	Missense_Mutation	SNP	A	C	C			2011-2339:2012-305-T	g.chr11:4870107A>C	uc010qyo.1	-	1	332	c.332T>G	c.(331-333)TTT>TGT	p.F111C		NM_001004758	NP_001004758
OR8K1	390157	broad.mit.edu	37	11	56113811	56113811	+	Silent	SNP	T	G	G			2011-2339:2012-305-T	g.chr11:56113811T>G	uc010rjg.1	+	1	297	c.297T>G	c.(295-297)TCT>TCG	p.S99S		NM_001002907	NP_001002907
PZP	5858	broad.mit.edu	37	12	9321453	9321453	+	Intron	SNP	T	C	C			2011-2339:2012-305-T	g.chr12:9321453T>C	uc001qvl.2	-						PZP_uc009zgl.2_Intron|PZP_uc010sgo.1_5'Flank|PZP_uc009zgm.1_Intron	NM_002864	NP_002855
MLL2	8085	broad.mit.edu	37	12	49424325	49424325	+	Intron	SNP	C	T	T			2011-2339:2012-305-T	g.chr12:49424325C>T	uc001rta.3	-							NM_003482	NP_003473
RB1	5925	broad.mit.edu	37	13	48916580	48916580	+	Intron	SNP	A	T	T			2011-2339:2012-305-T	g.chr13:48916580A>T	uc001vcb.2	+						RB1_uc010acs.1_Intron	NM_000321	NP_000312
FAM179B	23116	broad.mit.edu	37	14	45513997	45513997	+	Missense_Mutation	SNP	G	C	C			2011-2339:2012-305-T	g.chr14:45513997G>C	uc001wvv.2	+	13	4287	c.4078G>C	c.(4078-4080)GAC>CAC	p.D1360H	FAM179B_uc001wvw.2_Missense_Mutation_p.D1360H|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906
NRXN3	9369	broad.mit.edu	37	14	80312067	80312067	+	Intron	SNP	G	C	C			2011-2339:2012-305-T	g.chr14:80312067G>C	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_Intron|NRXN3_uc001xuq.2_Intron|NRXN3_uc010asw.2_Intron|NRXN3_uc001xur.3_Intron	NM_004796	NP_004787
NTRK3	4916	broad.mit.edu	37	15	88423598	88423598	+	Missense_Mutation	SNP	T	G	G			2011-2339:2012-305-T	g.chr15:88423598T>G	uc002bme.1	-	18	2399	c.2237A>C	c.(2236-2238)AAG>ACG	p.K746T	NTRK3_uc002bmh.2_Missense_Mutation_p.K724T|NTRK3_uc002bmf.1_Missense_Mutation_p.K732T	NM_001012338	NP_001012338
GEMIN4	50628	broad.mit.edu	37	17	652363	652363	+	Intron	SNP	A	G	G	rs59541183		2011-2339:2012-305-T	g.chr17:652363A>G	uc002frs.1	-						GEMIN4_uc010vqa.1_Intron	NM_015721	NP_056536
NOTCH3	4854	broad.mit.edu	37	19	15303304	15303304	+	Missense_Mutation	SNP	C	T	T	rs145069047		2011-2339:2012-305-T	g.chr19:15303304C>T	uc002nan.2	-	3	300	c.224G>A	c.(223-225)CGG>CAG	p.R75Q	NOTCH3_uc002nao.1_Missense_Mutation_p.R75Q	NM_000435	NP_000426
PEG3	5178	broad.mit.edu	37	19	57327776	57327776	+	Silent	SNP	A	C	C			2011-2339:2012-305-T	g.chr19:57327776A>C	uc002qnu.2	-	7	2385	c.2034T>G	c.(2032-2034)ACT>ACG	p.T678T	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.T649T|PEG3_uc002qnv.2_Silent_p.T678T|PEG3_uc002qnw.2_Silent_p.T554T|PEG3_uc002qnx.2_Silent_p.T552T|PEG3_uc010etr.2_Silent_p.T678T	NM_001146186	NP_001139658
APOB	338	broad.mit.edu	37	2	21231285	21231285	+	Missense_Mutation	SNP	T	A	A			2011-2339:2012-305-T	g.chr2:21231285T>A	uc002red.2	-	26	8583	c.8455A>T	c.(8455-8457)ATT>TTT	p.I2819F		NM_000384	NP_000375
LRP1B	53353	broad.mit.edu	37	2	141459917	141459917	+	Intron	SNP	A	C	C			2011-2339:2012-305-T	g.chr2:141459917A>C	uc002tvj.1	-							NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179483394	179483394	+	Missense_Mutation	SNP	T	G	G			2011-2339:2012-305-T	g.chr2:179483394T>G	uc010zfg.1	-	200	39403	c.39179A>C	c.(39178-39180)AAG>ACG	p.K13060T	TTN_uc010zfh.1_Missense_Mutation_p.K6755T|TTN_uc010zfi.1_Missense_Mutation_p.K6688T|TTN_uc010zfj.1_Missense_Mutation_p.K6563T	NM_133378	NP_596869
PAX3	5077	broad.mit.edu	37	2	223160203	223160203	+	Intron	SNP	C	A	A			2011-2339:2012-305-T	g.chr2:223160203C>A	uc010fwo.2	-						PAX3_uc002vmt.1_Intron|PAX3_uc002vmy.1_Intron|PAX3_uc002vmv.1_Intron|PAX3_uc002vmw.1_Intron|PAX3_uc002vmx.1_Intron|PAX3_uc002vmz.1_Intron|PAX3_uc002vna.1_Intron|CCDC140_uc002vnb.1_5'Flank	NM_181457	NP_852122
CUL3	8452	broad.mit.edu	37	2	225346587	225346587	+	Intron	SNP	G	A	A			2011-2339:2012-305-T	g.chr2:225346587G>A	uc002vny.2	-						CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Intron	NM_003590	NP_003581
ASXL1	171023	broad.mit.edu	37	20	30945745	30945745	+	5'Flank	SNP	A	C	C			2011-2339:2012-305-T	g.chr20:30945745A>C	uc002wxs.2	+						ASXL1_uc002wxr.1_5'Flank	NM_015338	NP_056153
COL18A1	80781	broad.mit.edu	37	21	46863017	46863017	+	Intron	SNP	G	A	A			2011-2339:2012-305-T	g.chr21:46863017G>A	uc002zhg.2	+							NM_130445	NP_569712
COL18A1	80781	broad.mit.edu	37	21	46863038	46863038	+	Intron	SNP	G	C	C	rs141985054	by1000genomes	2011-2339:2012-305-T	g.chr21:46863038G>C	uc002zhg.2	+							NM_130445	NP_569712
CHCHD6	84303	broad.mit.edu	37	3	126581396	126581396	+	Intron	SNP	C	T	T			2011-2339:2012-305-T	g.chr3:126581396C>T	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
FAT1	2195	broad.mit.edu	37	4	187541246	187541246	+	Missense_Mutation	SNP	G	A	A			2011-2339:2012-305-T	g.chr4:187541246G>A	uc003izf.2	-	10	6682	c.6494C>T	c.(6493-6495)TCA>TTA	p.S2165L		NM_005245	NP_005236
IL6ST	3572	broad.mit.edu	37	5	55256365	55256365	+	Missense_Mutation	SNP	T	C	C			2011-2339:2012-305-T	g.chr5:55256365T>C	uc003jqq.2	-	8	1093	c.838A>G	c.(838-840)ACC>GCC	p.T280A	IL6ST_uc010iwb.2_Missense_Mutation_p.T280A|IL6ST_uc010iwc.2_Missense_Mutation_p.T114A|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_5'UTR|IL6ST_uc003jqr.2_Missense_Mutation_p.T280A	NM_002184	NP_002175
SYNE1	23345	broad.mit.edu	37	6	152712521	152712521	+	Missense_Mutation	SNP	G	T	T			2011-2339:2012-305-T	g.chr6:152712521G>T	uc010kiw.2	-	52	8497	c.7895C>A	c.(7894-7896)GCA>GAA	p.A2632E	SYNE1_uc003qot.3_Missense_Mutation_p.A2639E|SYNE1_uc003qou.3_Missense_Mutation_p.A2632E|SYNE1_uc010kjb.1_Missense_Mutation_p.A2615E	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152754837	152754837	+	Intron	SNP	T	G	G			2011-2339:2012-305-T	g.chr6:152754837T>G	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron	NM_182961	NP_892006
PKHD1L1	93035	broad.mit.edu	37	8	110471831	110471831	+	Missense_Mutation	SNP	C	G	G			2011-2339:2012-305-T	g.chr8:110471831C>G	uc003yne.2	+	47	7116	c.7012C>G	c.(7012-7014)CAA>GAA	p.Q2338E		NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113392740	113392740	+	Intron	SNP	A	C	C			2011-2339:2012-305-T	g.chr8:113392740A>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113668530	113668530	+	Missense_Mutation	SNP	C	G	G			2011-2339:2012-305-T	g.chr8:113668530C>G	uc003ynu.2	-	18	3016	c.2857G>C	c.(2857-2859)GAT>CAT	p.D953H	CSMD3_uc003yns.2_Missense_Mutation_p.D225H|CSMD3_uc003ynt.2_Missense_Mutation_p.D913H|CSMD3_uc011lhx.1_Missense_Mutation_p.D849H	NM_198123	NP_937756
CDKN2A	1029	broad.mit.edu	37	9	21971120	21971120	+	Nonsense_Mutation	SNP	G	A	A	rs121913388		2011-2339:2012-305-T	g.chr9:21971120G>A	uc003zpk.2	-	2	450	c.238C>T	c.(238-240)CGA>TGA	p.R80*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.P135L	NM_000077	NP_000068
OLFM1	10439	broad.mit.edu	37	9	138011289	138011289	+	Intron	SNP	G	A	A			2011-2339:2012-305-T	g.chr9:138011289G>A	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfn.3_Intron	NM_014279	NP_055094
SCNN1D	6339	broad.mit.edu	37	1	1225004	1225004	+	Intron	SNP	T	C	C			2011-2340:2012-304-T	g.chr1:1225004T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
LOC200030	200030	broad.mit.edu	37	1	148346785	148346785	+	5'UTR	SNP	T	C	C			2011-2340:2012-304-T	g.chr1:148346785T>C	uc001eqf.2	-	1					LOC200030_uc001eqe.2_5'UTR|LOC200030_uc001eqg.2_5'UTR|NBPF14_uc009wkf.1_RNA|uc001erd.3_5'UTR|uc001erc.3_RNA|uc010paj.1_5'UTR|uc010pav.1_5'UTR|uc010paw.1_5'UTR	NM_017940	NP_060410
FAIM3	9214	broad.mit.edu	37	1	207097587	207097587	+	5'Flank	SNP	C	T	T			2011-2340:2012-304-T	g.chr1:207097587C>T	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
PHKG2	5261	broad.mit.edu	37	16	30760549	30760549	+	Intron	SNP	T	G	G			2011-2340:2012-304-T	g.chr16:30760549T>G	uc002dzk.1	+						PHKG2_uc002dzi.1_Intron|PHKG2_uc002dzj.1_Intron|PHKG2_uc002dzl.1_Intron	NM_000294	NP_000285
ATP9B	374868	broad.mit.edu	37	18	77087945	77087946	+	Intron	DNP	CG	TC	TC			2011-2340:2012-304-T	g.chr18:77087945_77087946CG>TC	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
RMND5A	64795	broad.mit.edu	37	2	87623796	87623796	+	Intron	SNP	C	G	G			2011-2340:2012-304-T	g.chr2:87623796C>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87655763	87655763	+	Intron	SNP	G	A	A			2011-2340:2012-304-T	g.chr2:87655763G>A	uc002srs.3	+								
SUMF1	285362	broad.mit.edu	37	3	4491061	4491061	+	Intron	SNP	T	C	C			2011-2340:2012-304-T	g.chr3:4491061T>C	uc003bpz.1	-						SUMF1_uc003bps.1_Intron|SUMF1_uc011ass.1_Intron|SUMF1_uc010hby.1_Intron|SUMF1_uc011ast.1_Intron	NM_182760	NP_877437
FAT4	79633	broad.mit.edu	37	4	126237374	126237374	+	5'Flank	SNP	G	T	T			2011-2340:2012-304-T	g.chr4:126237374G>T	uc003ifj.3	+							NM_024582	NP_078858
TSC1	7248	broad.mit.edu	37	9	135779005	135779005	+	Intron	SNP	G	T	T			2011-2340:2012-304-T	g.chr9:135779005G>T	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359
SCNN1D	6339	broad.mit.edu	37	1	1223597	1223597	+	Intron	SNP	C	T	T			2011-2341:2012-303-T	g.chr1:1223597C>T	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
MACF1	23499	broad.mit.edu	37	1	39751350	39751350	+	Silent	SNP	A	G	G			2011-2341:2012-303-T	g.chr1:39751350A>G	uc010ois.1	+	15	1648	c.1443A>G	c.(1441-1443)GAA>GAG	p.E481E	MACF1_uc001cda.1_Silent_p.E389E	NM_012090	NP_036222
PTPRF	5792	broad.mit.edu	37	1	44069490	44069490	+	Missense_Mutation	SNP	C	G	G			2011-2341:2012-303-T	g.chr1:44069490C>G	uc001cjr.2	+	16	3007	c.2667C>G	c.(2665-2667)ATC>ATG	p.I889M	PTPRF_uc001cjs.2_Missense_Mutation_p.I880M|PTPRF_uc001cju.2_Intron|PTPRF_uc009vwt.2_Missense_Mutation_p.I449M|PTPRF_uc001cjv.2_Missense_Mutation_p.I349M|PTPRF_uc001cjw.2_Missense_Mutation_p.I115M	NM_002840	NP_002831
PTPRF	5792	broad.mit.edu	37	1	44085025	44085025	+	Silent	SNP	G	A	A			2011-2341:2012-303-T	g.chr1:44085025G>A	uc001cjr.2	+	28	5053	c.4713G>A	c.(4711-4713)GAG>GAA	p.E1571E	PTPRF_uc001cjs.2_Silent_p.E1562E|PTPRF_uc001cju.2_Silent_p.E960E|PTPRF_uc009vwt.2_Silent_p.E1131E|PTPRF_uc001cjv.2_Silent_p.E1042E|PTPRF_uc001cjw.2_Silent_p.E797E	NM_002840	NP_002831
RBM15	64783	broad.mit.edu	37	1	110888133	110888133	+	Intron	SNP	G	C	C			2011-2341:2012-303-T	g.chr1:110888133G>C	uc001dzl.1	+						RBM15_uc001dzm.1_Intron|uc001dzn.1_RNA	NM_022768	NP_073605
FLG	2312	broad.mit.edu	37	1	152285696	152285696	+	Missense_Mutation	SNP	C	G	G			2011-2341:2012-303-T	g.chr1:152285696C>G	uc001ezu.1	-	3	1702	c.1666G>C	c.(1666-1668)GAT>CAT	p.D556H	uc001ezv.2_5'Flank	NM_002016	NP_002007
FLG	2312	broad.mit.edu	37	1	152286074	152286074	+	Missense_Mutation	SNP	C	T	T			2011-2341:2012-303-T	g.chr1:152286074C>T	uc001ezu.1	-	3	1324	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K	uc001ezv.2_RNA	NM_002016	NP_002007
FLG	2312	broad.mit.edu	37	1	152286406	152286406	+	Missense_Mutation	SNP	C	A	A			2011-2341:2012-303-T	g.chr1:152286406C>A	uc001ezu.1	-	3	992	c.956G>T	c.(955-957)AGA>ATA	p.R319I	uc001ezv.2_RNA	NM_002016	NP_002007
FLG	2312	broad.mit.edu	37	1	152286801	152286801	+	Missense_Mutation	SNP	C	G	G	rs146383574		2011-2341:2012-303-T	g.chr1:152286801C>G	uc001ezu.1	-	3	597	c.561G>C	c.(559-561)AAG>AAC	p.K187N	uc001ezv.2_Intron	NM_002016	NP_002007
FLG	2312	broad.mit.edu	37	1	152287258	152287258	+	Intron	SNP	C	G	G			2011-2341:2012-303-T	g.chr1:152287258C>G	uc001ezu.1	-						uc001ezv.2_RNA	NM_002016	NP_002007
SPTA1	6708	broad.mit.edu	37	1	158632693	158632693	+	Missense_Mutation	SNP	C	G	G			2011-2341:2012-303-T	g.chr1:158632693C>G	uc001fst.1	-	17	2462	c.2263G>C	c.(2263-2265)GAA>CAA	p.E755Q		NM_003126	NP_003117
DDR2	4921	broad.mit.edu	37	1	162741699	162741699	+	Intron	SNP	G	C	C			2011-2341:2012-303-T	g.chr1:162741699G>C	uc001gcf.2	+						DDR2_uc001gcg.2_Intron	NM_001014796	NP_001014796
USH2A	7399	broad.mit.edu	37	1	216051212	216051212	+	Missense_Mutation	SNP	G	C	C			2011-2341:2012-303-T	g.chr1:216051212G>C	uc001hku.1	-	43	8956	c.8569C>G	c.(8569-8571)CTG>GTG	p.L2857V		NM_206933	NP_996816
CUBN	8029	broad.mit.edu	37	10	16982153	16982153	+	Missense_Mutation	SNP	C	T	T			2011-2341:2012-303-T	g.chr10:16982153C>T	uc001ioo.2	-	37	5478	c.5426G>A	c.(5425-5427)GGA>GAA	p.G1809E		NM_001081	NP_001072
ATM	472	broad.mit.edu	37	11	108181089	108181089	+	Intron	SNP	G	T	T			2011-2341:2012-303-T	g.chr11:108181089G>T	uc001pkb.1	+						ATM_uc009yxr.1_Intron|C11orf65_uc010rvx.1_Intron|ATM_uc001pke.1_Intron|ATM_uc001pkg.1_Intron|ATM_uc009yxt.1_Intron	NM_000051	NP_000042
PDE3A	5139	broad.mit.edu	37	12	20787913	20787913	+	Missense_Mutation	SNP	G	A	A			2011-2341:2012-303-T	g.chr12:20787913G>A	uc001reh.1	+	8	1946	c.1924G>A	c.(1924-1926)GAA>AAA	p.E642K		NM_000921	NP_000912
DCTN2	10540	broad.mit.edu	37	12	57925928	57925928	+	Intron	SNP	T	C	C			2011-2341:2012-303-T	g.chr12:57925928T>C	uc001som.1	-						DCTN2_uc009zpu.1_Intron|DCTN2_uc009zpv.1_Intron|DCTN2_uc009zpw.1_Intron|DCTN2_uc001soo.1_Intron|DCTN2_uc001son.1_Intron|DCTN2_uc001sop.1_Intron|DCTN2_uc001soq.1_Intron|DCTN2_uc009zpx.1_Intron	NM_006400	NP_006391
GPC5	2262	broad.mit.edu	37	13	92380846	92380846	+	Missense_Mutation	SNP	G	C	C			2011-2341:2012-303-T	g.chr13:92380846G>C	uc010tif.1	+	4	1447	c.1081G>C	c.(1081-1083)GAT>CAT	p.D361H		NM_004466	NP_004457
GPC5	2262	broad.mit.edu	37	13	92380849	92380849	+	Nonsense_Mutation	SNP	C	T	T			2011-2341:2012-303-T	g.chr13:92380849C>T	uc010tif.1	+	4	1450	c.1084C>T	c.(1084-1086)CAG>TAG	p.Q362*		NM_004466	NP_004457
TFDP1	7027	broad.mit.edu	37	13	114279541	114279541	+	Intron	SNP	C	G	G			2011-2341:2012-303-T	g.chr13:114279541C>G	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
MYH6	4624	broad.mit.edu	37	14	23861798	23861798	+	Silent	SNP	T	C	C			2011-2341:2012-303-T	g.chr14:23861798T>C	uc001wjv.2	-	25	3382	c.3315A>G	c.(3313-3315)CAA>CAG	p.Q1105Q		NM_002471	NP_002462
FANCM	57697	broad.mit.edu	37	14	45633567	45633567	+	Silent	SNP	G	A	A			2011-2341:2012-303-T	g.chr14:45633567G>A	uc001wwd.3	+	10	1686	c.1587G>A	c.(1585-1587)GTG>GTA	p.V529V	FANCM_uc001wwc.2_Silent_p.V529V|FANCM_uc010anf.2_Silent_p.V503V|FANCM_uc001wwe.3_Intron	NM_020937	NP_065988
SYNE2	23224	broad.mit.edu	37	14	64489540	64489540	+	Missense_Mutation	SNP	G	C	C			2011-2341:2012-303-T	g.chr14:64489540G>C	uc001xgm.2	+	38	5826	c.5596G>C	c.(5596-5598)GAA>CAA	p.E1866Q	SYNE2_uc001xgl.2_Missense_Mutation_p.E1866Q	NM_015180	NP_055995
TRIP11	9321	broad.mit.edu	37	14	92481012	92481012	+	Intron	SNP	C	T	T			2011-2341:2012-303-T	g.chr14:92481012C>T	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
DICER1	23405	broad.mit.edu	37	14	95607131	95607131	+	Intron	SNP	T	C	C			2011-2341:2012-303-T	g.chr14:95607131T>C	uc001ydw.2	-						DICER1_uc001ydx.2_Intron|DICER1_uc001ydz.1_Intron|DICER1_uc001yea.1_Intron|DICER1_uc001yeb.1_Intron|DICER1_uc001yec.1_Intron|hsa-mir-3173|MI0014204_5'Flank	NM_030621	NP_085124
B2M	567	broad.mit.edu	37	15	45010089	45010089	+	3'UTR	SNP	C	G	G			2011-2341:2012-303-T	g.chr15:45010089C>G	uc001zuc.2	+	4						NM_004048	NP_004039
TLN2	83660	broad.mit.edu	37	15	63004083	63004083	+	Intron	SNP	G	A	A			2011-2341:2012-303-T	g.chr15:63004083G>A	uc002alb.3	+							NM_015059	NP_055874
RAB11FIP3	9727	broad.mit.edu	37	16	554070	554070	+	Intron	SNP	C	A	A			2011-2341:2012-303-T	g.chr16:554070C>A	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
DNAH3	55567	broad.mit.edu	37	16	21063269	21063269	+	Intron	SNP	G	C	C			2011-2341:2012-303-T	g.chr16:21063269G>C	uc010vbe.1	-							NM_017539	NP_060009
NOB1	28987	broad.mit.edu	37	16	69791154	69791154	+	5'Flank	SNP	C	G	G			2011-2341:2012-303-T	g.chr16:69791154C>G	uc002exs.2	-							NM_014062	NP_054781
ANKRD11	29123	broad.mit.edu	37	16	89372860	89372860	+	Intron	SNP	A	C	C			2011-2341:2012-303-T	g.chr16:89372860A>C	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_Intron|ANKRD11_uc002fnf.1_Intron	NM_013275	NP_037407
TP53	7157	broad.mit.edu	37	17	7578176	7578176	+	Splice_Site	SNP	C	A	A			2011-2341:2012-303-T	g.chr17:7578176C>A	uc002gim.2	-	6	866	c.672_splice	c.e6+1	p.E224_splice	TP53_uc002gig.1_Splice_Site_p.E224_splice|TP53_uc002gih.2_Splice_Site_p.E224_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Splice_Site_p.E92_splice|TP53_uc010cng.1_Splice_Site_p.E92_splice|TP53_uc002gii.1_Splice_Site_p.E92_splice|TP53_uc010cnh.1_Splice_Site_p.E224_splice|TP53_uc010cni.1_Splice_Site_p.E224_splice|TP53_uc002gij.2_Splice_Site_p.E224_splice|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Splice_Site_p.E131_splice|TP53_uc002gio.2_Splice_Site_p.E92_splice|TP53_uc010vug.1_Missense_Mutation_p.V186F	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7578785	7578785	+	Intron	SNP	C	G	G			2011-2341:2012-303-T	g.chr17:7578785C>G	uc002gim.2	-						TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'UTR|TP53_uc010cng.1_5'UTR|TP53_uc002gii.1_5'UTR|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gij.2_Intron|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Intron	NM_001126112	NP_001119584
NF1	4763	broad.mit.edu	37	17	29661966	29661966	+	Missense_Mutation	SNP	C	T	T			2011-2341:2012-303-T	g.chr17:29661966C>T	uc002hgg.2	+	40	6256	c.5923C>T	c.(5923-5925)CTT>TTT	p.L1975F	NF1_uc002hgh.2_Missense_Mutation_p.L1954F|NF1_uc010cso.2_Missense_Mutation_p.L163F|NF1_uc010wbt.1_5'Flank|NF1_uc010wbu.1_5'Flank	NM_001042492	NP_001035957
BRIP1	83990	broad.mit.edu	37	17	59853836	59853836	+	Missense_Mutation	SNP	C	T	T			2011-2341:2012-303-T	g.chr17:59853836C>T	uc002izk.1	-	14	2164	c.2023G>A	c.(2023-2025)GAA>AAA	p.E675K	BRIP1_uc002izl.1_Missense_Mutation_p.E56K	NM_032043	NP_114432
ABCA9	10350	broad.mit.edu	37	17	67028361	67028361	+	Missense_Mutation	SNP	G	C	C			2011-2341:2012-303-T	g.chr17:67028361G>C	uc002jhu.2	-	10	1476	c.1333C>G	c.(1333-1335)CAA>GAA	p.Q445E	ABCA9_uc010dez.2_Missense_Mutation_p.Q445E	NM_080283	NP_525022
ZNF521	25925	broad.mit.edu	37	18	22805114	22805114	+	Missense_Mutation	SNP	G	T	T			2011-2341:2012-303-T	g.chr18:22805114G>T	uc002kvk.2	-	4	3015	c.2768C>A	c.(2767-2769)GCT>GAT	p.A923D	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.A923D|ZNF521_uc002kvl.2_Missense_Mutation_p.A703D	NM_015461	NP_056276
ZNF521	25925	broad.mit.edu	37	18	22806740	22806740	+	Missense_Mutation	SNP	C	G	G			2011-2341:2012-303-T	g.chr18:22806740C>G	uc002kvk.2	-	4	1389	c.1142G>C	c.(1141-1143)CGA>CCA	p.R381P	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.R381P|ZNF521_uc002kvl.2_Missense_Mutation_p.R161P	NM_015461	NP_056276
NOTCH3	4854	broad.mit.edu	37	19	15295602	15295602	+	Intron	SNP	C	G	G			2011-2341:2012-303-T	g.chr19:15295602C>G	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
NOTCH3	4854	broad.mit.edu	37	19	15295606	15295606	+	Intron	SNP	C	T	T			2011-2341:2012-303-T	g.chr19:15295606C>T	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
NOTCH3	4854	broad.mit.edu	37	19	15296171	15296171	+	Missense_Mutation	SNP	C	G	G			2011-2341:2012-303-T	g.chr19:15296171C>G	uc002nan.2	-	14	2269	c.2193G>C	c.(2191-2193)CAG>CAC	p.Q731H	NOTCH3_uc002nao.1_Missense_Mutation_p.Q731H	NM_000435	NP_000426
APOB	338	broad.mit.edu	37	2	21249778	21249778	+	Missense_Mutation	SNP	C	T	T			2011-2341:2012-303-T	g.chr2:21249778C>T	uc002red.2	-	15	2254	c.2126G>A	c.(2125-2127)GGA>GAA	p.G709E		NM_000384	NP_000375
LRP1B	53353	broad.mit.edu	37	2	141242919	141242919	+	Nonsense_Mutation	SNP	G	A	A			2011-2341:2012-303-T	g.chr2:141242919G>A	uc002tvj.1	-	59	10390	c.9418C>T	c.(9418-9420)CAA>TAA	p.Q3140*		NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179412268	179412268	+	Missense_Mutation	SNP	C	T	T			2011-2341:2012-303-T	g.chr2:179412268C>T	uc010zfg.1	-	288	86605	c.86381G>A	c.(86380-86382)AGT>AAT	p.S28794N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S22489N|TTN_uc010zfi.1_Missense_Mutation_p.S22422N|TTN_uc010zfj.1_Missense_Mutation_p.S22297N	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179516030	179516030	+	Missense_Mutation	SNP	C	G	G			2011-2341:2012-303-T	g.chr2:179516030C>G	uc010zfg.1	-	162	32487	c.32263G>C	c.(32263-32265)GAA>CAA	p.E10755Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_RNA|TTN_uc002umx.1_5'UTR	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179571384	179571384	+	Silent	SNP	C	T	T			2011-2341:2012-303-T	g.chr2:179571384C>T	uc010zfg.1	-	99	25709	c.25485G>A	c.(25483-25485)CTG>CTA	p.L8495L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L5156L	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179603127	179603127	+	Intron	SNP	C	G	G			2011-2341:2012-303-T	g.chr2:179603127C>G	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133378	NP_596869
PMS1	5378	broad.mit.edu	37	2	190648976	190648976	+	5'UTR	SNP	C	T	T			2011-2341:2012-303-T	g.chr2:190648976C>T	uc002urh.3	+	1					PMS1_uc010zga.1_5'UTR|PMS1_uc010zgb.1_5'UTR|PMS1_uc002urk.3_5'UTR|PMS1_uc002uri.3_5'UTR|PMS1_uc010zgc.1_5'UTR|PMS1_uc010zgd.1_5'UTR|PMS1_uc002urj.2_5'Flank|ORMDL1_uc002urb.3_5'Flank|ORMDL1_uc002urc.3_5'Flank|ORMDL1_uc002urd.3_Intron|ORMDL1_uc002ure.3_Intron|ORMDL1_uc002urf.3_Intron|PMS1_uc010zfz.1_5'UTR	NM_000534	NP_000525
PMS1	5378	broad.mit.edu	37	2	190718990	190718990	+	Missense_Mutation	SNP	A	G	G			2011-2341:2012-303-T	g.chr2:190718990A>G	uc002urh.3	+	9	1521	c.992A>G	c.(991-993)AAT>AGT	p.N331S	PMS1_uc010zga.1_Missense_Mutation_p.N292S|PMS1_uc010zgb.1_Missense_Mutation_p.N270S|PMS1_uc002urk.3_Missense_Mutation_p.N292S|PMS1_uc002uri.3_Missense_Mutation_p.N331S|PMS1_uc010zgc.1_Missense_Mutation_p.N155S|PMS1_uc010zgd.1_Missense_Mutation_p.N155S|PMS1_uc002urj.2_RNA|PMS1_uc010fry.1_Missense_Mutation_p.N292S|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Missense_Mutation_p.N116S|PMS1_uc002urm.2_RNA|PMS1_uc002urn.1_5'UTR	NM_000534	NP_000525
TRPM2	7226	broad.mit.edu	37	21	45815973	45815973	+	Intron	SNP	G	A	A			2011-2341:2012-303-T	g.chr21:45815973G>A	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron	NM_003307	NP_003298
MICAL3	57553	broad.mit.edu	37	22	18359807	18359807	+	Intron	SNP	G	A	A			2011-2341:2012-303-T	g.chr22:18359807G>A	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
MST1R	4486	broad.mit.edu	37	3	49936866	49936866	+	Intron	SNP	C	T	T			2011-2341:2012-303-T	g.chr3:49936866C>T	uc003cxy.3	-						MST1R_uc011bdd.1_Intron|MST1R_uc011bde.1_Intron|MST1R_uc011bdf.1_Intron|MST1R_uc011bdg.1_Intron	NM_002447	NP_002438
NEK4	6787	broad.mit.edu	37	3	52767427	52767427	+	Intron	SNP	C	T	T	rs767418	by1000genomes	2011-2341:2012-303-T	g.chr3:52767427C>T	uc003dfq.3	-						NEK4_uc011bej.1_Intron	NM_003157	NP_003148
EPHA3	2042	broad.mit.edu	37	3	89156426	89156426	+	5'Flank	SNP	C	T	T			2011-2341:2012-303-T	g.chr3:89156426C>T	uc003dqy.2	+						EPHA3_uc003dqx.1_5'Flank|EPHA3_uc010hon.1_5'Flank	NM_005233	NP_005224
CEP63	80254	broad.mit.edu	37	3	134230065	134230065	+	Intron	SNP	C	G	G			2011-2341:2012-303-T	g.chr3:134230065C>G	uc003eqo.1	+						CEP63_uc003eql.1_Intron|CEP63_uc003eqm.2_Intron|CEP63_uc003eqn.1_Intron	NM_025180	NP_079456
CLSTN2	64084	broad.mit.edu	37	3	140167437	140167437	+	Silent	SNP	C	T	T			2011-2341:2012-303-T	g.chr3:140167437C>T	uc003etn.2	+	6	1054	c.864C>T	c.(862-864)TGC>TGT	p.C288C	CLSTN2_uc003etm.2_Silent_p.C288C	NM_022131	NP_071414
SI	6476	broad.mit.edu	37	3	164716508	164716508	+	Intron	SNP	C	T	T			2011-2341:2012-303-T	g.chr3:164716508C>T	uc003fei.2	-							NM_001041	NP_001032
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2011-2341:2012-303-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
TP63	8626	broad.mit.edu	37	3	189590995	189590995	+	Intron	SNP	G	C	C			2011-2341:2012-303-T	g.chr3:189590995G>C	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_3'UTR|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189597673	189597673	+	Intron	SNP	G	C	C			2011-2341:2012-303-T	g.chr3:189597673G>C	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195502789	195502789	+	Intron	SNP	A	G	G			2011-2341:2012-303-T	g.chr3:195502789A>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
WHSC1	7468	broad.mit.edu	37	4	1913891	1913891	+	Intron	SNP	C	T	T			2011-2341:2012-303-T	g.chr4:1913891C>T	uc003gdz.3	+						WHSC1_uc003geb.3_Intron|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_Intron|WHSC1_uc003gef.3_Intron|WHSC1_uc003gdx.2_Intron|WHSC1_uc003gdy.1_Intron|WHSC1_uc010icd.1_Intron|WHSC1_uc003gea.1_Intron|WHSC1_uc010ice.1_Intron|WHSC1_uc003geh.1_Intron	NM_001042424	NP_001035889
WHSC1	7468	broad.mit.edu	37	4	1913896	1913896	+	Intron	SNP	C	A	A			2011-2341:2012-303-T	g.chr4:1913896C>A	uc003gdz.3	+						WHSC1_uc003geb.3_Intron|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_Intron|WHSC1_uc003gef.3_Intron|WHSC1_uc003gdx.2_Intron|WHSC1_uc003gdy.1_Intron|WHSC1_uc010icd.1_Intron|WHSC1_uc003gea.1_Intron|WHSC1_uc010ice.1_Intron|WHSC1_uc003geh.1_Intron	NM_001042424	NP_001035889
SORCS2	57537	broad.mit.edu	37	4	7708340	7708340	+	Intron	SNP	G	A	A			2011-2341:2012-303-T	g.chr4:7708340G>A	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
SORCS2	57537	broad.mit.edu	37	4	7708493	7708493	+	Intron	SNP	G	C	C			2011-2341:2012-303-T	g.chr4:7708493G>C	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
TET2	54790	broad.mit.edu	37	4	106066583	106066583	+	5'Flank	SNP	C	T	T			2011-2341:2012-303-T	g.chr4:106066583C>T	uc003hxk.2	+						TET2_uc011cez.1_5'Flank|TET2_uc010ilp.1_5'Flank|TET2_uc003hxi.1_5'Flank	NM_001127208	NP_001120680
CTNND2	1501	broad.mit.edu	37	5	11022832	11022832	+	Intron	SNP	C	G	G			2011-2341:2012-303-T	g.chr5:11022832C>G	uc003jfa.1	-						CTNND2_uc010itt.2_Intron|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron|CTNND2_uc011cmx.1_Intron	NM_001332	NP_001323
DNAH5	1767	broad.mit.edu	37	5	13829869	13829869	+	Intron	SNP	C	T	T			2011-2341:2012-303-T	g.chr5:13829869C>T	uc003jfd.2	-							NM_001369	NP_001360
TRIO	7204	broad.mit.edu	37	5	14403313	14403313	+	Intron	SNP	G	T	T			2011-2341:2012-303-T	g.chr5:14403313G>T	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
CDH12	1010	broad.mit.edu	37	5	21842397	21842397	+	Silent	SNP	G	A	A			2011-2341:2012-303-T	g.chr5:21842397G>A	uc010iuc.2	-	5	1145	c.687C>T	c.(685-687)GTC>GTT	p.V229V	CDH12_uc011cno.1_Silent_p.V189V|CDH12_uc003jgk.2_Silent_p.V229V	NM_004061	NP_004052
PCDHB4	56131	broad.mit.edu	37	5	140502049	140502049	+	Missense_Mutation	SNP	G	C	C			2011-2341:2012-303-T	g.chr5:140502049G>C	uc003lip.1	+	1	469	c.469G>C	c.(469-471)GAG>CAG	p.E157Q		NM_018938	NP_061761
SYNE1	23345	broad.mit.edu	37	6	152477214	152477214	+	Missense_Mutation	SNP	C	G	G			2011-2341:2012-303-T	g.chr6:152477214C>G	uc010kiw.2	-	132	24411	c.23809G>C	c.(23809-23811)GAG>CAG	p.E7937Q	SYNE1_uc010kiv.2_Missense_Mutation_p.E2461Q|SYNE1_uc003qos.3_Missense_Mutation_p.E2461Q|SYNE1_uc003qot.3_Missense_Mutation_p.E7866Q|SYNE1_uc003qou.3_Missense_Mutation_p.E7937Q|SYNE1_uc003qop.3_Missense_Mutation_p.E99Q|SYNE1_uc011eez.1_Missense_Mutation_p.E139Q|SYNE1_uc003qoq.3_Missense_Mutation_p.E139Q|SYNE1_uc003qor.3_Missense_Mutation_p.E837Q	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152771634	152771634	+	Intron	SNP	G	A	A			2011-2341:2012-303-T	g.chr6:152771634G>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152772334	152772334	+	Nonsense_Mutation	SNP	G	A	A			2011-2341:2012-303-T	g.chr6:152772334G>A	uc010kiw.2	-	26	3636	c.3034C>T	c.(3034-3036)CAA>TAA	p.Q1012*	SYNE1_uc003qot.3_Nonsense_Mutation_p.Q1019*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Q1012*|SYNE1_uc010kjb.1_Nonsense_Mutation_p.Q995*|SYNE1_uc003qow.2_Nonsense_Mutation_p.Q307*|SYNE1_uc003qox.1_Nonsense_Mutation_p.Q528*	NM_182961	NP_892006
PARK2	5071	broad.mit.edu	37	6	162365097	162365097	+	Intron	SNP	G	C	C			2011-2341:2012-303-T	g.chr6:162365097G>C	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron	NM_004562	NP_004553
ADAP1	11033	broad.mit.edu	37	7	945412	945412	+	Intron	SNP	A	G	G			2011-2341:2012-303-T	g.chr7:945412A>G	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
VPS41	27072	broad.mit.edu	37	7	38816434	38816434	+	Intron	SNP	C	G	G			2011-2341:2012-303-T	g.chr7:38816434C>G	uc003tgy.2	-						VPS41_uc003tgz.2_Intron|VPS41_uc010kxn.2_Intron	NM_014396	NP_055211
WBSCR17	64409	broad.mit.edu	37	7	70800751	70800751	+	Intron	SNP	G	C	C			2011-2341:2012-303-T	g.chr7:70800751G>C	uc003tvy.2	+						WBSCR17_uc003tvz.2_Intron	NM_022479	NP_071924
PPP1R9A	55607	broad.mit.edu	37	7	94897935	94897935	+	Silent	SNP	G	C	C			2011-2341:2012-303-T	g.chr7:94897935G>C	uc003unp.2	+	12	2955	c.2673G>C	c.(2671-2673)GTG>GTC	p.V891V	PPP1R9A_uc010lfj.2_Silent_p.V913V|PPP1R9A_uc011kif.1_Silent_p.V891V|PPP1R9A_uc003unq.2_Silent_p.V891V|PPP1R9A_uc011kig.1_Silent_p.V891V|PPP1R9A_uc003unr.2_5'UTR	NM_017650	NP_060120
CNTNAP2	26047	broad.mit.edu	37	7	146829588	146829588	+	Silent	SNP	C	T	T			2011-2341:2012-303-T	g.chr7:146829588C>T	uc003weu.1	+	8	1851	c.1335C>T	c.(1333-1335)ATC>ATT	p.I445I		NM_014141	NP_054860
RB1CC1	9821	broad.mit.edu	37	8	53571435	53571435	+	Silent	SNP	G	C	C			2011-2341:2012-303-T	g.chr8:53571435G>C	uc003xre.3	-	13	2349	c.1791C>G	c.(1789-1791)CTC>CTG	p.L597L	RB1CC1_uc003xrf.3_Silent_p.L597L	NM_014781	NP_055596
RB1CC1	9821	broad.mit.edu	37	8	53596452	53596452	+	Missense_Mutation	SNP	C	G	G			2011-2341:2012-303-T	g.chr8:53596452C>G	uc003xre.3	-	4	751	c.193G>C	c.(193-195)GGG>CGG	p.G65R	RB1CC1_uc003xrf.3_Missense_Mutation_p.G65R	NM_014781	NP_055596
ZFHX4	79776	broad.mit.edu	37	8	77617166	77617166	+	Missense_Mutation	SNP	C	A	A			2011-2341:2012-303-T	g.chr8:77617166C>A	uc003yav.2	+	2	1230	c.843C>A	c.(841-843)TTC>TTA	p.F281L	ZFHX4_uc003yat.1_Missense_Mutation_p.F281L|ZFHX4_uc003yau.1_Missense_Mutation_p.F281L|ZFHX4_uc003yaw.1_Missense_Mutation_p.F281L	NM_024721	NP_078997
NECAB1	64168	broad.mit.edu	37	8	91893311	91893311	+	Missense_Mutation	SNP	G	A	A			2011-2341:2012-303-T	g.chr8:91893311G>A	uc011lgg.1	+	5	504	c.310G>A	c.(310-312)GAA>AAA	p.E104K		NM_022351	NP_071746
RIMS2	9699	broad.mit.edu	37	8	105260862	105260862	+	Intron	SNP	G	A	A			2011-2341:2012-303-T	g.chr8:105260862G>A	uc003yls.2	+						RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Intron|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492
PHKA2	5256	broad.mit.edu	37	X	18938239	18938239	+	Missense_Mutation	SNP	T	A	A			2011-2341:2012-303-T	g.chrX:18938239T>A	uc004cyv.3	-	18	2304	c.1874A>T	c.(1873-1875)GAG>GTG	p.E625V	PHKA2_uc004cyu.3_5'UTR|PHKA2_uc010nfg.1_RNA	NM_000292	NP_000283
HUWE1	10075	broad.mit.edu	37	X	53579966	53579966	+	Intron	SNP	C	T	T			2011-2341:2012-303-T	g.chrX:53579966C>T	uc004dsp.2	-						HUWE1_uc004dsn.2_Intron	NM_031407	NP_113584
FAM5B	57795	broad.mit.edu	37	1	177247895	177247895	+	Missense_Mutation	SNP	G	T	T			2011-2342:2012-302-T	g.chr1:177247895G>T	uc001glf.2	+	7	1521	c.1209G>T	c.(1207-1209)CAG>CAT	p.Q403H	FAM5B_uc010pna.1_Missense_Mutation_p.Q153H|FAM5B_uc001glg.2_Missense_Mutation_p.Q298H	NM_021165	NP_066988
GNG4	2786	broad.mit.edu	37	1	235734954	235734954	+	Intron	SNP	G	A	A			2011-2342:2012-302-T	g.chr1:235734954G>A	uc001hxe.3	-						GNG4_uc009xfz.2_Intron|GNG4_uc001hxh.3_Intron	NM_001098722	NP_001092192
ODF3	113746	broad.mit.edu	37	11	196091	196091	+	5'Flank	SNP	G	C	C			2011-2342:2012-302-T	g.chr11:196091G>C	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
F7	2155	broad.mit.edu	37	13	113761591	113761591	+	Intron	SNP	G	A	A			2011-2342:2012-302-T	g.chr13:113761591G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
FANCA	2175	broad.mit.edu	37	16	89809284	89809284	+	Missense_Mutation	SNP	A	G	G			2011-2342:2012-302-T	g.chr16:89809284A>G	uc002fou.1	-	37	3731	c.3689T>C	c.(3688-3690)CTG>CCG	p.L1230P	FANCA_uc010vpn.1_Missense_Mutation_p.L1230P|FANCA_uc010vpo.1_Missense_Mutation_p.L316P	NM_000135	NP_000126
SHC2	25759	broad.mit.edu	37	19	457975	457975	+	Intron	SNP	T	C	C			2011-2342:2012-302-T	g.chr19:457975T>C	uc002loq.3	-							NM_012435	NP_036567
CASP8	841	broad.mit.edu	37	2	202106032	202106032	+	Intron	SNP	C	T	T	rs6704688	by1000genomes	2011-2342:2012-302-T	g.chr2:202106032C>T	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxn.2_RNA	NM_033355	NP_203519
RIPK4	54101	broad.mit.edu	37	21	43162071	43162071	+	Missense_Mutation	SNP	G	A	A			2011-2342:2012-302-T	g.chr21:43162071G>A	uc002yzn.1	-	8	1330	c.1282C>T	c.(1282-1284)CCG>TCG	p.P428S		NM_020639	NP_065690
UMODL1	89766	broad.mit.edu	37	21	43552802	43552802	+	Intron	SNP	C	G	G	rs73373663	by1000genomes	2011-2342:2012-302-T	g.chr21:43552802C>G	uc002zaf.1	+						UMODL1_uc002zad.1_Intron|UMODL1_uc002zae.1_Intron|UMODL1_uc002zag.1_Intron|UMODL1_uc002zal.1_Intron|UMODL1_uc010gpa.1_Intron	NM_001004416	NP_001004416
CECR5	27440	broad.mit.edu	37	22	17628121	17628121	+	Intron	SNP	A	G	G	rs34689774		2011-2342:2012-302-T	g.chr22:17628121A>G	uc002zmf.2	-						CECR5_uc002zme.2_Intron|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Intron	NM_033070	NP_149061
CECR5	27440	broad.mit.edu	37	22	17628123	17628123	+	Intron	SNP	G	A	A	rs34574674		2011-2342:2012-302-T	g.chr22:17628123G>A	uc002zmf.2	-						CECR5_uc002zme.2_Intron|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Intron	NM_033070	NP_149061
CECR5	27440	broad.mit.edu	37	22	17628125	17628125	+	Intron	SNP	C	A	A			2011-2342:2012-302-T	g.chr22:17628125C>A	uc002zmf.2	-						CECR5_uc002zme.2_Intron|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Intron	NM_033070	NP_149061
TP63	8626	broad.mit.edu	37	3	189456774	189456774	+	Intron	SNP	C	T	T			2011-2342:2012-302-T	g.chr3:189456774C>T	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron	NM_003722	NP_003713
HLA-B	3106	broad.mit.edu	37	6	31323141	31323141	+	Missense_Mutation	SNP	C	T	T			2011-2342:2012-302-T	g.chr6:31323141C>T	uc003nth.2	-	4	902	c.848G>A	c.(847-849)TGC>TAC	p.C283Y	HLA-C_uc003ntb.2_RNA|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_RNA|HLA-B_uc011dnk.1_RNA|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Missense_Mutation_p.C162Y|HLA-B_uc003nti.1_RNA|HLA-B_uc010jsn.1_RNA	NM_005514	NP_005505
EGFR	1956	broad.mit.edu	37	7	55235242	55235242	+	Intron	SNP	T	C	C	rs145662886		2011-2342:2012-302-T	g.chr7:55235242T>C	uc003tqk.2	+						EGFR_uc003tqi.2_Intron|EGFR_uc003tqj.2_Intron|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Intron|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
C1orf159	54991	broad.mit.edu	37	1	1043743	1043743	+	Intron	SNP	T	C	C	rs12751333	by1000genomes	2011-2343:2012-334-T	g.chr1:1043743T>C	uc001act.2	-						C1orf159_uc001acu.2_Intron|C1orf159_uc001acr.2_Intron|C1orf159_uc001acs.2_Intron|C1orf159_uc001acp.2_5'Flank	NM_017891	NP_060361
C1orf173	127254	broad.mit.edu	37	1	75038805	75038805	+	Silent	SNP	T	C	C			2011-2343:2012-334-T	g.chr1:75038805T>C	uc001dgg.2	-	14	2808	c.2589A>G	c.(2587-2589)GCA>GCG	p.A863A		NM_001002912	NP_001002912
ABL2	27	broad.mit.edu	37	1	179087934	179087934	+	Intron	SNP	T	C	C	rs2171959	by1000genomes	2011-2343:2012-334-T	g.chr1:179087934T>C	uc001gmj.3	-						ABL2_uc010pnf.1_Intron|ABL2_uc010png.1_Intron|ABL2_uc010pnh.1_Intron|ABL2_uc009wxe.2_Intron|ABL2_uc001gmg.3_Intron|ABL2_uc001gmi.3_Intron|ABL2_uc001gmh.3_Intron|ABL2_uc010pne.1_Intron|ABL2_uc009wxf.1_Intron|ABL2_uc001gmk.2_Intron	NM_007314	NP_009298
PARP1	142	broad.mit.edu	37	1	226567172	226567172	+	Intron	SNP	A	C	C	rs2271345	by1000genomes	2011-2343:2012-334-T	g.chr1:226567172A>C	uc001hqd.3	-							NM_001618	NP_001609
PCDH15	65217	broad.mit.edu	37	10	55779915	55779915	+	Intron	SNP	G	A	A	rs3812658	by1000genomes	2011-2343:2012-334-T	g.chr10:55779915G>A	uc001jju.1	-						PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Intron|PCDH15_uc010qhw.1_Intron|PCDH15_uc010qhx.1_Intron|PCDH15_uc010qhy.1_Intron|PCDH15_uc010qhz.1_Intron|PCDH15_uc010qia.1_Intron|PCDH15_uc010qib.1_Intron|PCDH15_uc001jjw.2_Intron	NM_033056	NP_149045
STK32C	282974	broad.mit.edu	37	10	134094532	134094532	+	Intron	SNP	T	C	C	rs112976163	by1000genomes	2011-2343:2012-334-T	g.chr10:134094532T>C	uc001lle.1	-						STK32C_uc001lld.1_Intron|STK32C_uc010quu.1_Intron|STK32C_uc009ybc.1_Intron|STK32C_uc009ybd.1_Intron	NM_173575	NP_775846
ANO4	121601	broad.mit.edu	37	12	101510371	101510371	+	Intron	SNP	T	G	G	rs349661	by1000genomes	2011-2343:2012-334-T	g.chr12:101510371T>G	uc010svm.1	+						ANO4_uc001thw.2_Intron|ANO4_uc001thx.2_Intron|ANO4_uc001thy.2_Intron	NM_178826	NP_849148
FLT3	2322	broad.mit.edu	37	13	28623699	28623699	+	Intron	SNP	G	T	T	rs9507985	by1000genomes	2011-2343:2012-334-T	g.chr13:28623699G>T	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
TFDP1	7027	broad.mit.edu	37	13	114279913	114279913	+	Intron	SNP	A	T	T			2011-2343:2012-334-T	g.chr13:114279913A>T	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
SYNE2	23224	broad.mit.edu	37	14	64434701	64434701	+	Intron	SNP	C	T	T	rs1255892	by1000genomes	2011-2343:2012-334-T	g.chr14:64434701C>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
TC2N	123036	broad.mit.edu	37	14	92265272	92265272	+	Intron	SNP	G	A	A			2011-2343:2012-334-T	g.chr14:92265272G>A	uc001xzu.3	-						TC2N_uc001xzt.3_Intron|TC2N_uc010auc.2_Intron|TC2N_uc001xzv.3_Intron	NM_001128595	NP_001122067
SCNN1B	6338	broad.mit.edu	37	16	23327770	23327770	+	Intron	SNP	T	C	C			2011-2343:2012-334-T	g.chr16:23327770T>C	uc002dln.2	+							NM_000336	NP_000327
PRKCB	5579	broad.mit.edu	37	16	24104328	24104328	+	Intron	SNP	A	G	G	rs880824	by1000genomes	2011-2343:2012-334-T	g.chr16:24104328A>G	uc002dmd.2	+						PRKCB_uc002dme.2_Intron	NM_212535	NP_997700
HYDIN	54768	broad.mit.edu	37	16	70884540	70884540	+	Missense_Mutation	SNP	G	T	T			2011-2343:2012-334-T	g.chr16:70884540G>T	uc002ezr.2	-	74	12587	c.12459C>A	c.(12457-12459)TTC>TTA	p.F4153L	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210
MYH8	4626	broad.mit.edu	37	17	10318616	10318616	+	Missense_Mutation	SNP	G	T	T			2011-2343:2012-334-T	g.chr17:10318616G>T	uc002gmm.2	-	8	829	c.734C>A	c.(733-735)TCT>TAT	p.S245Y	uc002gml.1_Intron	NM_002472	NP_002463
ABI3	51225	broad.mit.edu	37	17	47287067	47287067	+	5'Flank	SNP	A	G	G	rs2233362	by1000genomes	2011-2343:2012-334-T	g.chr17:47287067A>G	uc002iop.1	+						GNGT2_uc002ioo.1_5'Flank|ABI3_uc002ioq.1_5'Flank	NM_016428	NP_057512
ACE	1636	broad.mit.edu	37	17	61571210	61571210	+	Intron	SNP	C	T	T	rs12709437	by1000genomes	2011-2343:2012-334-T	g.chr17:61571210C>T	uc002jau.1	+						ACE_uc002jav.1_Intron|ACE_uc010ddv.1_Intron|ACE_uc010wpj.1_Intron|ACE_uc002jaw.1_Intron|ACE_uc010wpk.1_Intron	NM_000789	NP_000780
ABCA6	23460	broad.mit.edu	37	17	67096924	67096924	+	Intron	SNP	A	T	T			2011-2343:2012-334-T	g.chr17:67096924A>T	uc002jhw.1	-							NM_080284	NP_525023
ABCA6	23460	broad.mit.edu	37	17	67099129	67099129	+	Intron	SNP	A	G	G	rs2364315	by1000genomes	2011-2343:2012-334-T	g.chr17:67099129A>G	uc002jhw.1	-							NM_080284	NP_525023
ABCA6	23460	broad.mit.edu	37	17	67138138	67138138	+	5'Flank	SNP	C	T	T	rs3744489	by1000genomes	2011-2343:2012-334-T	g.chr17:67138138C>T	uc002jhw.1	-						ABCA6_uc002jhy.2_5'Flank	NM_080284	NP_525023
TBCD	6904	broad.mit.edu	37	17	80857233	80857233	+	Intron	SNP	G	T	T			2011-2343:2012-334-T	g.chr17:80857233G>T	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kgb.1_Intron	NM_005993	NP_005984
CDH2	1000	broad.mit.edu	37	18	25736581	25736581	+	Intron	SNP	C	T	T	rs33950804	by1000genomes	2011-2343:2012-334-T	g.chr18:25736581C>T	uc002kwg.2	-							NM_001792	NP_001783
NOTCH3	4854	broad.mit.edu	37	19	15276007	15276007	+	Intron	SNP	C	A	A	rs2886698	by1000genomes	2011-2343:2012-334-T	g.chr19:15276007C>A	uc002nan.2	-							NM_000435	NP_000426
ZNF331	55422	broad.mit.edu	37	19	54025201	54025201	+	5'UTR	SNP	A	G	G	rs8100247	by1000genomes	2011-2343:2012-334-T	g.chr19:54025201A>G	uc002qbx.1	+	1					ZNF331_uc002qbw.1_RNA|ZNF331_uc002qby.1_5'UTR|ZNF331_uc002qbz.1_5'UTR	NM_018555	NP_061025
LRP1B	53353	broad.mit.edu	37	2	141116448	141116448	+	Missense_Mutation	SNP	C	A	A			2011-2343:2012-334-T	g.chr2:141116448C>A	uc002tvj.1	-	73	12171	c.11199G>T	c.(11197-11199)GAG>GAT	p.E3733D		NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141253319	141253319	+	Splice_Site	SNP	T	A	A			2011-2343:2012-334-T	g.chr2:141253319T>A	uc002tvj.1	-	56	9823	c.8851_splice	c.e56-1	p.C2951_splice		NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179582605	179582605	+	Intron	SNP	A	G	G	rs6750145	by1000genomes	2011-2343:2012-334-T	g.chr2:179582605A>G	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179583398	179583398	+	Intron	SNP	T	C	C	rs62178978	by1000genomes	2011-2343:2012-334-T	g.chr2:179583398T>C	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179587687	179587687	+	Intron	SNP	T	C	C	rs2742327	by1000genomes	2011-2343:2012-334-T	g.chr2:179587687T>C	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133378	NP_596869
ABCA12	26154	broad.mit.edu	37	2	215855780	215855780	+	Intron	SNP	G	A	A	rs4533467	by1000genomes	2011-2343:2012-334-T	g.chr2:215855780G>A	uc002vew.2	-						ABCA12_uc002vev.2_Intron|ABCA12_uc010zjn.1_Intron	NM_173076	NP_775099
ANO7	50636	broad.mit.edu	37	2	242145271	242145271	+	Intron	SNP	C	G	G	rs75283011	by1000genomes	2011-2343:2012-334-T	g.chr2:242145271C>G	uc002wax.2	+							NM_001001891	NP_001001891
PAK7	57144	broad.mit.edu	37	20	9543611	9543611	+	Missense_Mutation	SNP	C	T	T			2011-2343:2012-334-T	g.chr20:9543611C>T	uc002wnl.2	-	7	2088	c.1543G>A	c.(1543-1545)GTC>ATC	p.V515I	PAK7_uc002wnk.2_Missense_Mutation_p.V515I|PAK7_uc002wnj.2_Missense_Mutation_p.V515I|PAK7_uc010gby.1_Missense_Mutation_p.V515I	NM_020341	NP_065074
CNTN6	27255	broad.mit.edu	37	3	1262387	1262387	+	Missense_Mutation	SNP	C	A	A			2011-2343:2012-334-T	g.chr3:1262387C>A	uc003boz.2	+	3	339	c.72C>A	c.(70-72)AGC>AGA	p.S24R	CNTN6_uc010hbo.2_Missense_Mutation_p.S19R|CNTN6_uc011asj.1_5'UTR|CNTN6_uc003bpa.2_Missense_Mutation_p.S24R	NM_014461	NP_055276
FOXP1	27086	broad.mit.edu	37	3	71102799	71102799	+	Silent	SNP	G	A	A			2011-2343:2012-334-T	g.chr3:71102799G>A	uc003dol.2	-	4	731	c.408C>T	c.(406-408)CTC>CTT	p.L136L	FOXP1_uc003dom.2_Intron|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.L136L|FOXP1_uc003dop.2_Silent_p.L136L|FOXP1_uc003doq.1_Silent_p.L136L|FOXP1_uc003doi.2_Silent_p.L36L|FOXP1_uc003doj.2_Silent_p.L36L|FOXP1_uc003dok.2_Intron	NM_032682	NP_116071
SI	6476	broad.mit.edu	37	3	164716435	164716435	+	Missense_Mutation	SNP	C	A	A			2011-2343:2012-334-T	g.chr3:164716435C>A	uc003fei.2	-	38	4495	c.4433G>T	c.(4432-4434)AGA>ATA	p.R1478I		NM_001041	NP_001032
SI	6476	broad.mit.edu	37	3	164741609	164741609	+	Intron	SNP	T	C	C	rs77622844	by1000genomes	2011-2343:2012-334-T	g.chr3:164741609T>C	uc003fei.2	-							NM_001041	NP_001032
FBXW7	55294	broad.mit.edu	37	4	153247367	153247367	+	Missense_Mutation	SNP	G	C	C			2011-2343:2012-334-T	g.chr4:153247367G>C	uc003ims.2	-	10	1584	c.1435C>G	c.(1435-1437)CGA>GGA	p.R479G	FBXW7_uc011cii.1_Missense_Mutation_p.R479G|FBXW7_uc003imt.2_Missense_Mutation_p.R479G|FBXW7_uc011cih.1_Missense_Mutation_p.R303G|FBXW7_uc003imq.2_Missense_Mutation_p.R399G|FBXW7_uc003imr.2_Missense_Mutation_p.R361G	NM_033632	NP_361014
DNAH5	1767	broad.mit.edu	37	5	13752191	13752191	+	Intron	SNP	C	T	T	rs115374116	by1000genomes	2011-2343:2012-334-T	g.chr5:13752191C>T	uc003jfd.2	-						DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360
CDH10	1008	broad.mit.edu	37	5	24535730	24535730	+	Intron	SNP	G	A	A			2011-2343:2012-334-T	g.chr5:24535730G>A	uc003jgr.1	-						CDH10_uc011cnu.1_Intron	NM_006727	NP_006718
MEF2C	4208	broad.mit.edu	37	5	88018509	88018509	+	Missense_Mutation	SNP	G	A	A			2011-2343:2012-334-T	g.chr5:88018509G>A	uc003kjj.2	-	11	2007	c.1334C>T	c.(1333-1335)TCC>TTC	p.S445F	MEF2C_uc003kji.2_Missense_Mutation_p.S437F|MEF2C_uc003kjk.2_Missense_Mutation_p.S445F|MEF2C_uc003kjm.2_Missense_Mutation_p.S435F|MEF2C_uc003kjl.2_Missense_Mutation_p.S455F	NM_002397	NP_002388
RUFY1	80230	broad.mit.edu	37	5	178986978	178986978	+	Intron	SNP	C	G	G	rs7704349	by1000genomes	2011-2343:2012-334-T	g.chr5:178986978C>G	uc003mka.1	+						RUFY1_uc003mkb.1_Intron|RUFY1_uc003mkc.1_5'UTR	NM_025158	NP_079434
HLA-G	3135	broad.mit.edu	37	6	29893418	29893418	+	Intron	SNP	G	C	C	rs9259816	by1000genomes	2011-2343:2012-334-T	g.chr6:29893418G>C	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_RNA|uc003noi.2_5'Flank	NM_002127	NP_002118
SYNE1	23345	broad.mit.edu	37	6	152671661	152671661	+	Intron	SNP	C	A	A			2011-2343:2012-334-T	g.chr6:152671661C>A	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
ZFHX4	79776	broad.mit.edu	37	8	77764101	77764101	+	Silent	SNP	G	T	T			2011-2343:2012-334-T	g.chr8:77764101G>T	uc003yav.2	+	10	5196	c.4809G>T	c.(4807-4809)GGG>GGT	p.G1603G	ZFHX4_uc003yau.1_Silent_p.G1648G|ZFHX4_uc003yaw.1_Silent_p.G1603G	NM_024721	NP_078997
ZFHX4	79776	broad.mit.edu	37	8	77767653	77767653	+	Silent	SNP	T	C	C			2011-2343:2012-334-T	g.chr8:77767653T>C	uc003yav.2	+	10	8748	c.8361T>C	c.(8359-8361)GAT>GAC	p.D2787D	ZFHX4_uc003yau.1_Silent_p.D2832D|ZFHX4_uc003yaw.1_Silent_p.D2787D	NM_024721	NP_078997
PKHD1L1	93035	broad.mit.edu	37	8	110522965	110522965	+	Intron	SNP	T	C	C	rs2607624	by1000genomes	2011-2343:2012-334-T	g.chr8:110522965T>C	uc003yne.2	+							NM_177531	NP_803875
PKHD1L1	93035	broad.mit.edu	37	8	110527569	110527569	+	Intron	SNP	A	T	T	rs1783167	by1000genomes	2011-2343:2012-334-T	g.chr8:110527569A>T	uc003yne.2	+							NM_177531	NP_803875
PKHD1L1	93035	broad.mit.edu	37	8	110530774	110530774	+	Intron	SNP	T	C	C	rs1783169	by1000genomes	2011-2343:2012-334-T	g.chr8:110530774T>C	uc003yne.2	+							NM_177531	NP_803875
NFIB	4781	broad.mit.edu	37	9	14306884	14306884	+	Intron	SNP	T	C	C	rs10961471	by1000genomes	2011-2343:2012-334-T	g.chr9:14306884T>C	uc003zle.2	-						NFIB_uc003zlf.2_Intron|NFIB_uc011lmo.1_Intron	NM_005596	NP_005587
CDKN2A	1029	broad.mit.edu	37	9	21971111	21971111	+	Missense_Mutation	SNP	G	A	A	rs121913385		2011-2343:2012-334-T	g.chr9:21971111G>A	uc003zpk.2	-	2	459	c.247C>T	c.(247-249)CAC>TAC	p.H83Y	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.A138V	NM_000077	NP_000068
NOTCH1	4851	broad.mit.edu	37	9	139400985	139400985	+	Nonsense_Mutation	SNP	G	T	T			2011-2343:2012-334-T	g.chr9:139400985G>T	uc004chz.2	-	24	4008	c.4008C>A	c.(4006-4008)TGC>TGA	p.C1336*	NOTCH1_uc004cia.1_Nonsense_Mutation_p.C566*	NM_017617	NP_060087
MEGF6	1953	broad.mit.edu	37	1	3493264	3493264	+	Intron	SNP	A	T	T	rs2821056	by1000genomes	2011-2344:2012-333-T	g.chr1:3493264A>T	uc001akl.2	-							NM_001409	NP_001400
KIF1B	23095	broad.mit.edu	37	1	10364046	10364046	+	Intron	SNP	C	T	T			2011-2344:2012-333-T	g.chr1:10364046C>T	uc001aqx.3	+						KIF1B_uc001aqv.3_Nonsense_Mutation_p.Q935*|KIF1B_uc001aqw.3_Intron|KIF1B_uc001aqy.2_Intron|KIF1B_uc001aqz.2_Intron|KIF1B_uc001ara.2_Intron|KIF1B_uc001arb.2_Intron	NM_015074	NP_055889
EPHA2	1969	broad.mit.edu	37	1	16460443	16460443	+	Intron	SNP	G	A	A			2011-2344:2012-333-T	g.chr1:16460443G>A	uc001aya.1	-							NM_004431	NP_004422
MCOLN2	255231	broad.mit.edu	37	1	85424182	85424182	+	Intron	SNP	A	G	G	rs673998	by1000genomes	2011-2344:2012-333-T	g.chr1:85424182A>G	uc001dkm.2	-						MCOLN2_uc001dkn.2_Intron	NM_153259	NP_694991
FLG	2312	broad.mit.edu	37	1	152283422	152283422	+	Missense_Mutation	SNP	C	G	G			2011-2344:2012-333-T	g.chr1:152283422C>G	uc001ezu.1	-	3	3976	c.3940G>C	c.(3940-3942)GAA>CAA	p.E1314Q	uc001ezv.2_5'Flank	NM_002016	NP_002007
USH2A	7399	broad.mit.edu	37	1	216062100	216062100	+	Nonsense_Mutation	SNP	C	A	A			2011-2344:2012-333-T	g.chr1:216062100C>A	uc001hku.1	-	41	8278	c.7891G>T	c.(7891-7893)GAG>TAG	p.E2631*		NM_206933	NP_996816
ADARB2	105	broad.mit.edu	37	10	1502751	1502751	+	Intron	SNP	A	T	T	rs141602997		2011-2344:2012-333-T	g.chr10:1502751A>T	uc009xhq.2	-							NM_018702	NP_061172
CUBN	8029	broad.mit.edu	37	10	17145252	17145252	+	Intron	SNP	T	A	A			2011-2344:2012-333-T	g.chr10:17145252T>A	uc001ioo.2	-							NM_001081	NP_001072
ATM	472	broad.mit.edu	37	11	108188039	108188039	+	Intron	SNP	C	G	G	rs17107917	by1000genomes	2011-2344:2012-333-T	g.chr11:108188039C>G	uc001pkb.1	+						ATM_uc009yxr.1_Intron|C11orf65_uc010rvx.1_Intron|ATM_uc001pke.1_Intron|ATM_uc001pkg.1_Intron	NM_000051	NP_000042
ABCD2	225	broad.mit.edu	37	12	40010761	40010761	+	Intron	SNP	T	A	A			2011-2344:2012-333-T	g.chr12:40010761T>A	uc001rmb.2	-							NM_005164	NP_005155
F7	2155	broad.mit.edu	37	13	113761762	113761762	+	Intron	SNP	A	T	T			2011-2344:2012-333-T	g.chr13:113761762A>T	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
SYNE2	23224	broad.mit.edu	37	14	64467346	64467346	+	Missense_Mutation	SNP	C	T	T			2011-2344:2012-333-T	g.chr14:64467346C>T	uc001xgm.2	+	28	3777	c.3547C>T	c.(3547-3549)CAT>TAT	p.H1183Y	SYNE2_uc001xgl.2_Missense_Mutation_p.H1183Y	NM_015180	NP_055995
NFATC3	4775	broad.mit.edu	37	16	68215401	68215401	+	Missense_Mutation	SNP	G	C	C			2011-2344:2012-333-T	g.chr16:68215401G>C	uc002evo.1	+	7	2149	c.1939G>C	c.(1939-1941)GAA>CAA	p.E647Q	NFATC3_uc010vkl.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkm.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkn.1_Missense_Mutation_p.E168Q|NFATC3_uc010vko.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkp.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkq.1_Missense_Mutation_p.E168Q|NFATC3_uc002evl.2_Missense_Mutation_p.E168Q|NFATC3_uc002evk.2_Missense_Mutation_p.E647Q|NFATC3_uc002evm.1_Missense_Mutation_p.E647Q|NFATC3_uc002evn.1_Missense_Mutation_p.E647Q|NFATC3_uc010vkr.1_Missense_Mutation_p.E168Q|NFATC3_uc010vks.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkt.1_Missense_Mutation_p.E168Q|NFATC3_uc010vku.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkv.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkw.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkx.1_Missense_Mutation_p.E168Q|NFATC3_uc010vky.1_Missense_Mutation_p.E168Q|NFATC3_uc010vkz.1_Missense_Mutation_p.E168Q|NFATC3_uc010vla.1_Missense_Mutation_p.E168Q|NFATC3_uc010vlb.1_Missense_Mutation_p.E168Q|NFATC3_uc010vlc.1_Missense_Mutation_p.E168Q	NM_173165	NP_775188
NFATC3	4775	broad.mit.edu	37	16	68215488	68215488	+	Intron	SNP	G	A	A			2011-2344:2012-333-T	g.chr16:68215488G>A	uc002evo.1	+						NFATC3_uc010vkl.1_Intron|NFATC3_uc010vkm.1_Intron|NFATC3_uc010vkn.1_Intron|NFATC3_uc010vko.1_Intron|NFATC3_uc010vkp.1_Intron|NFATC3_uc010vkq.1_Intron|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Intron|NFATC3_uc002evm.1_Intron|NFATC3_uc002evn.1_Intron|NFATC3_uc010vkr.1_Intron|NFATC3_uc010vks.1_Intron|NFATC3_uc010vkt.1_Intron|NFATC3_uc010vku.1_Intron|NFATC3_uc010vkv.1_Intron|NFATC3_uc010vkw.1_Intron|NFATC3_uc010vkx.1_Intron|NFATC3_uc010vky.1_Intron|NFATC3_uc010vkz.1_Intron|NFATC3_uc010vla.1_Intron|NFATC3_uc010vlb.1_Intron|NFATC3_uc010vlc.1_Intron	NM_173165	NP_775188
BZRAP1	9256	broad.mit.edu	37	17	56384983	56384983	+	Missense_Mutation	SNP	G	C	C			2011-2344:2012-333-T	g.chr17:56384983G>C	uc002ivx.3	-	24	5843	c.4972C>G	c.(4972-4974)CAG>GAG	p.Q1658E	BZRAP1_uc002ivv.2_5'Flank|BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.Q1598E|BZRAP1_uc010wnt.1_Missense_Mutation_p.Q1658E	NM_004758	NP_004749
ZNF331	55422	broad.mit.edu	37	19	54079870	54079870	+	Intron	SNP	T	C	C			2011-2344:2012-333-T	g.chr19:54079870T>C	uc002qbx.1	+						ZNF331_uc002qby.1_Intron|ZNF331_uc002qbz.1_Intron|ZNF331_uc002qca.1_Intron|ZNF331_uc010eqr.1_Intron|ZNF331_uc002qcb.1_Intron|ZNF331_uc002qcc.1_Intron|ZNF331_uc002qcd.1_Intron	NM_018555	NP_061025
RMND5A	64795	broad.mit.edu	37	2	87651733	87651733	+	Intron	SNP	G	A	A			2011-2344:2012-333-T	g.chr2:87651733G>A	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141115606	141115606	+	Silent	SNP	G	T	T			2011-2344:2012-333-T	g.chr2:141115606G>T	uc002tvj.1	-	74	12309	c.11337C>A	c.(11335-11337)CTC>CTA	p.L3779L		NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141643746	141643746	+	Missense_Mutation	SNP	C	G	G			2011-2344:2012-333-T	g.chr2:141643746C>G	uc002tvj.1	-	24	4897	c.3925G>C	c.(3925-3927)GAA>CAA	p.E1309Q	LRP1B_uc010fnl.1_Missense_Mutation_p.E491Q	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179497613	179497613	+	Intron	SNP	A	G	G			2011-2344:2012-333-T	g.chr2:179497613A>G	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179587135	179587135	+	Missense_Mutation	SNP	C	G	G			2011-2344:2012-333-T	g.chr2:179587135C>G	uc010zfg.1	-	74	18871	c.18647G>C	c.(18646-18648)AGA>ACA	p.R6216T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R2877T	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179635156	179635156	+	Missense_Mutation	SNP	G	C	C			2011-2344:2012-333-T	g.chr2:179635156G>C	uc010zfg.1	-	35	8587	c.8363C>G	c.(8362-8364)GCC>GGC	p.A2788G	TTN_uc010zfh.1_Missense_Mutation_p.A2742G|TTN_uc010zfi.1_Missense_Mutation_p.A2742G|TTN_uc010zfj.1_Missense_Mutation_p.A2742G|TTN_uc002unb.2_Missense_Mutation_p.A2788G	NM_133378	NP_596869
PMS1	5378	broad.mit.edu	37	2	190719190	190719190	+	Missense_Mutation	SNP	G	A	A			2011-2344:2012-333-T	g.chr2:190719190G>A	uc002urh.3	+	9	1721	c.1192G>A	c.(1192-1194)GAA>AAA	p.E398K	PMS1_uc010zga.1_Missense_Mutation_p.E359K|PMS1_uc010zgb.1_Missense_Mutation_p.E337K|PMS1_uc002urk.3_Missense_Mutation_p.E359K|PMS1_uc002uri.3_Missense_Mutation_p.E398K|PMS1_uc010zgc.1_Missense_Mutation_p.E222K|PMS1_uc010zgd.1_Missense_Mutation_p.E222K|PMS1_uc002urj.2_RNA|PMS1_uc010fry.1_Missense_Mutation_p.E359K|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Missense_Mutation_p.E183K|PMS1_uc002urm.2_RNA|PMS1_uc002urn.1_Missense_Mutation_p.E66K	NM_000534	NP_000525
PMS1	5378	broad.mit.edu	37	2	190741856	190741856	+	Intron	SNP	C	G	G			2011-2344:2012-333-T	g.chr2:190741856C>G	uc002urh.3	+						PMS1_uc002urk.3_Intron|PMS1_uc002uri.3_Intron|PMS1_uc010zgc.1_Intron|PMS1_uc010zgd.1_Intron|PMS1_uc002urj.2_Intron|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Intron|PMS1_uc002urm.2_Intron	NM_000534	NP_000525
INPP1	3628	broad.mit.edu	37	2	191231273	191231273	+	Intron	SNP	C	A	A	rs9784054	by1000genomes	2011-2344:2012-333-T	g.chr2:191231273C>A	uc002ury.3	+						INPP1_uc010fsb.2_Intron|INPP1_uc002urx.3_Intron	NM_001128928	NP_001122400
MAP2	4133	broad.mit.edu	37	2	210561608	210561608	+	Intron	SNP	G	A	A			2011-2344:2012-333-T	g.chr2:210561608G>A	uc002vde.1	+						MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Intron	NM_002374	NP_002365
ERBB4	2066	broad.mit.edu	37	2	212570083	212570083	+	Silent	SNP	T	A	A			2011-2344:2012-333-T	g.chr2:212570083T>A	uc002veg.1	-	10	1256	c.1158A>T	c.(1156-1158)CCA>CCT	p.P386P	ERBB4_uc002veh.1_Silent_p.P386P|ERBB4_uc010zji.1_Silent_p.P386P|ERBB4_uc010zjj.1_Silent_p.P386P|ERBB4_uc010fut.1_Silent_p.P386P	NM_005235	NP_005226
PAX3	5077	broad.mit.edu	37	2	223160203	223160203	+	Intron	SNP	C	A	A			2011-2344:2012-333-T	g.chr2:223160203C>A	uc010fwo.2	-						PAX3_uc002vmt.1_Intron|PAX3_uc002vmy.1_Intron|PAX3_uc002vmv.1_Intron|PAX3_uc002vmw.1_Intron|PAX3_uc002vmx.1_Intron|PAX3_uc002vmz.1_Intron|PAX3_uc002vna.1_Intron|CCDC140_uc002vnb.1_5'Flank	NM_181457	NP_852122
PLCB1	23236	broad.mit.edu	37	20	8702989	8702989	+	Intron	SNP	A	G	G			2011-2344:2012-333-T	g.chr20:8702989A>G	uc002wnb.2	+						PLCB1_uc010zrb.1_Intron|PLCB1_uc002wna.2_Intron|PLCB1_uc002wnc.1_Intron|PLCB1_uc002wnd.1_Intron	NM_015192	NP_056007
BAGE2	85319	broad.mit.edu	37	21	11098545	11098545	+	Intron	SNP	C	A	A			2011-2344:2012-333-T	g.chr21:11098545C>A	uc002yit.1	-						BAGE_uc002yix.2_Intron	NM_182482	NP_872288
MPPED1	758	broad.mit.edu	37	22	43892319	43892319	+	Intron	SNP	G	A	A			2011-2344:2012-333-T	g.chr22:43892319G>A	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
POLQ	10721	broad.mit.edu	37	3	121209266	121209266	+	Intron	SNP	A	C	C			2011-2344:2012-333-T	g.chr3:121209266A>C	uc003eee.3	-						POLQ_uc003eed.2_Missense_Mutation_p.S10A	NM_199420	NP_955452
PIK3CB	5291	broad.mit.edu	37	3	138403390	138403390	+	Intron	SNP	C	T	T	rs625468	by1000genomes	2011-2344:2012-333-T	g.chr3:138403390C>T	uc011bmq.1	-						PIK3CB_uc011bmn.1_Intron|PIK3CB_uc011bmo.1_Intron|PIK3CB_uc011bmp.1_Intron	NM_006219	NP_006210
GMPS	8833	broad.mit.edu	37	3	155652860	155652860	+	Intron	SNP	C	T	T	rs75672038	byFrequency;by1000genomes	2011-2344:2012-333-T	g.chr3:155652860C>T	uc003faq.2	+						GMPS_uc011bom.1_Intron	NM_003875	NP_003866
SI	6476	broad.mit.edu	37	3	164724567	164724567	+	Intron	SNP	A	G	G	rs7618643	by1000genomes	2011-2344:2012-333-T	g.chr3:164724567A>G	uc003fei.2	-							NM_001041	NP_001032
SLITRK3	22865	broad.mit.edu	37	3	164905780	164905780	+	Nonsense_Mutation	SNP	G	A	A	rs141763022	by1000genomes	2011-2344:2012-333-T	g.chr3:164905780G>A	uc003fej.3	-	2	3283	c.2839C>T	c.(2839-2841)CAA>TAA	p.Q947*	SLITRK3_uc003fek.2_Nonsense_Mutation_p.Q947*	NM_014926	NP_055741
DGKG	1608	broad.mit.edu	37	3	185867952	185867952	+	Missense_Mutation	SNP	G	C	C			2011-2344:2012-333-T	g.chr3:185867952G>C	uc003fqa.2	-	25	2840	c.2303C>G	c.(2302-2304)GCG>GGG	p.A768G	DGKG_uc003fqb.2_Missense_Mutation_p.A729G|DGKG_uc003fqc.2_Missense_Mutation_p.A743G|DGKG_uc011brx.1_Missense_Mutation_p.A709G	NM_001346	NP_001337
DSPP	1834	broad.mit.edu	37	4	88536829	88536829	+	Silent	SNP	T	C	C			2011-2344:2012-333-T	g.chr4:88536829T>C	uc003hqu.2	+	5	3135	c.3015T>C	c.(3013-3015)GAT>GAC	p.D1005D		NM_014208	NP_055023
DSPP	1834	broad.mit.edu	37	4	88536982	88536982	+	Silent	SNP	T	C	C			2011-2344:2012-333-T	g.chr4:88536982T>C	uc003hqu.2	+	5	3288	c.3168T>C	c.(3166-3168)AAT>AAC	p.N1056N		NM_014208	NP_055023
SLC12A7	10723	broad.mit.edu	37	5	1070935	1070935	+	Intron	SNP	T	C	C			2011-2344:2012-333-T	g.chr5:1070935T>C	uc003jbu.2	-							NM_006598	NP_006589
DNAH5	1767	broad.mit.edu	37	5	13931205	13931205	+	Intron	SNP	G	C	C	rs1530497	by1000genomes	2011-2344:2012-333-T	g.chr5:13931205G>C	uc003jfd.2	-						DNAH5_uc003jfe.1_Intron	NM_001369	NP_001360
PCDHB12	56124	broad.mit.edu	37	5	140589016	140589016	+	Missense_Mutation	SNP	C	A	A			2011-2344:2012-333-T	g.chr5:140589016C>A	uc003liz.2	+	1	726	c.537C>A	c.(535-537)CAC>CAA	p.H179Q	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755
AMD1	262	broad.mit.edu	37	6	111213587	111213587	+	Missense_Mutation	SNP	C	T	T			2011-2344:2012-333-T	g.chr6:111213587C>T	uc003puk.1	+	6	878	c.556C>T	c.(556-558)CCA>TCA	p.P186S	AMD1_uc011eay.1_Missense_Mutation_p.P117S|AMD1_uc011eaz.1_Missense_Mutation_p.P157S|AMD1_uc011eba.1_Missense_Mutation_p.P66S|AMD1_uc003pul.1_Missense_Mutation_p.P38S	NM_001634	NP_001625
C6orf118	168090	broad.mit.edu	37	6	165714834	165714834	+	Intron	SNP	A	G	G	rs93927	by1000genomes	2011-2344:2012-333-T	g.chr6:165714834A>G	uc003qum.3	-						C6orf118_uc011egi.1_Intron	NM_144980	NP_659417
SMOC2	64094	broad.mit.edu	37	6	168999951	168999951	+	Intron	SNP	C	T	T	rs78030168	by1000genomes	2011-2344:2012-333-T	g.chr6:168999951C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
RAC1	5879	broad.mit.edu	37	7	6438255	6438255	+	Intron	SNP	C	G	G			2011-2344:2012-333-T	g.chr7:6438255C>G	uc003spx.2	+						RAC1_uc003spw.2_Intron	NM_006908	NP_008839
EMID2	136227	broad.mit.edu	37	7	101080651	101080651	+	Intron	SNP	G	C	C			2011-2344:2012-333-T	g.chr7:101080651G>C	uc010lhy.1	+						EMID2_uc003uyo.1_Intron	NM_133457	NP_597714
RELN	5649	broad.mit.edu	37	7	103215959	103215959	+	Intron	SNP	A	G	G			2011-2344:2012-333-T	g.chr7:103215959A>G	uc003vca.2	-						RELN_uc010liz.2_Intron	NM_005045	NP_005036
BRAF	673	broad.mit.edu	37	7	140439480	140439480	+	Intron	SNP	G	A	A			2011-2344:2012-333-T	g.chr7:140439480G>A	uc003vwc.3	-							NM_004333	NP_004324
BRAF	673	broad.mit.edu	37	7	140439849	140439849	+	Intron	SNP	C	T	T			2011-2344:2012-333-T	g.chr7:140439849C>T	uc003vwc.3	-							NM_004333	NP_004324
EZH2	2146	broad.mit.edu	37	7	148506145	148506145	+	Intron	SNP	G	C	C			2011-2344:2012-333-T	g.chr7:148506145G>C	uc003wfd.1	-						EZH2_uc011kug.1_Intron|EZH2_uc003wfb.1_Intron|EZH2_uc003wfc.1_Intron|EZH2_uc011kuh.1_Intron	NM_004456	NP_004447
WHSC1L1	54904	broad.mit.edu	37	8	38205624	38205624	+	Silent	SNP	G	A	A			2011-2344:2012-333-T	g.chr8:38205624G>A	uc003xli.2	-	2	584	c.66C>T	c.(64-66)CTC>CTT	p.L22L	WHSC1L1_uc011lbm.1_Silent_p.L22L|WHSC1L1_uc010lwe.2_Silent_p.L22L|WHSC1L1_uc003xlj.2_Silent_p.L22L	NM_023034	NP_075447
WHSC1L1	54904	broad.mit.edu	37	8	38205681	38205681	+	Missense_Mutation	SNP	G	C	C			2011-2344:2012-333-T	g.chr8:38205681G>C	uc003xli.2	-	2	527	c.9C>G	c.(7-9)TTC>TTG	p.F3L	WHSC1L1_uc011lbm.1_Missense_Mutation_p.F3L|WHSC1L1_uc010lwe.2_Missense_Mutation_p.F3L|WHSC1L1_uc003xlj.2_Missense_Mutation_p.F3L	NM_023034	NP_075447
CSMD3	114788	broad.mit.edu	37	8	113585643	113585643	+	Intron	SNP	G	A	A			2011-2344:2012-333-T	g.chr8:113585643G>A	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113649084	113649084	+	Missense_Mutation	SNP	C	A	A			2011-2344:2012-333-T	g.chr8:113649084C>A	uc003ynu.2	-	22	3836	c.3677G>T	c.(3676-3678)GGC>GTC	p.G1226V	CSMD3_uc003yns.2_Missense_Mutation_p.G498V|CSMD3_uc003ynt.2_Missense_Mutation_p.G1186V|CSMD3_uc011lhx.1_Missense_Mutation_p.G1122V	NM_198123	NP_937756
FAM135B	51059	broad.mit.edu	37	8	139163884	139163884	+	Missense_Mutation	SNP	G	T	T			2011-2344:2012-333-T	g.chr8:139163884G>T	uc003yuy.2	-	13	3005	c.2834C>A	c.(2833-2835)GCC>GAC	p.A945D	FAM135B_uc003yux.2_Missense_Mutation_p.A846D|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.A507D|FAM135B_uc003yvb.2_Missense_Mutation_p.A507D	NM_015912	NP_056996
PBX3	5090	broad.mit.edu	37	9	128728459	128728459	+	3'UTR	SNP	A	G	G	rs11792585	by1000genomes	2011-2344:2012-333-T	g.chr9:128728459A>G	uc004bqb.2	+	9					PBX3_uc004bqc.2_3'UTR|PBX3_uc004bqd.2_3'UTR|PBX3_uc011lzw.1_3'UTR|PBX3_uc011lzx.1_3'UTR|PBX3_uc004bqe.2_3'UTR	NM_006195	NP_006186
NUP214	8021	broad.mit.edu	37	9	134004912	134004912	+	Intron	SNP	A	C	C	rs3736957	by1000genomes	2011-2344:2012-333-T	g.chr9:134004912A>C	uc004cag.2	+						NUP214_uc004cah.2_Intron|NUP214_uc004caf.1_Intron	NM_005085	NP_005076
POMT1	10585	broad.mit.edu	37	9	134391432	134391432	+	Intron	SNP	G	A	A	rs35076804		2011-2344:2012-333-T	g.chr9:134391432G>A	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
C1orf173	127254	broad.mit.edu	37	1	75038352	75038352	+	Silent	SNP	C	T	T			2011-2345:2012-332-T	g.chr1:75038352C>T	uc001dgg.2	-	14	3261	c.3042G>A	c.(3040-3042)GAG>GAA	p.E1014E		NM_001002912	NP_001002912
NOTCH2	4853	broad.mit.edu	37	1	120468161	120468161	+	Silent	SNP	C	G	G			2011-2345:2012-332-T	g.chr1:120468161C>G	uc001eik.2	-	25	4534	c.4278G>C	c.(4276-4278)CTG>CTC	p.L1426L		NM_024408	NP_077719
NOTCH2	4853	broad.mit.edu	37	1	120611554	120611554	+	Intron	SNP	T	C	C	rs75248693		2011-2345:2012-332-T	g.chr1:120611554T>C	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
ASH1L	55870	broad.mit.edu	37	1	155312029	155312029	+	Intron	SNP	C	T	T	rs4971050	by1000genomes	2011-2345:2012-332-T	g.chr1:155312029C>T	uc009wqq.2	-						RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Intron	NM_018489	NP_060959
CUBN	8029	broad.mit.edu	37	10	16967381	16967381	+	Missense_Mutation	SNP	G	T	T			2011-2345:2012-332-T	g.chr10:16967381G>T	uc001ioo.2	-	43	6557	c.6505C>A	c.(6505-6507)CCT>ACT	p.P2169T		NM_001081	NP_001072
HRAS	3265	broad.mit.edu	37	11	534285	534285	+	Missense_Mutation	SNP	C	A	A	rs104894226		2011-2345:2012-332-T	g.chr11:534285C>A	uc001lpv.2	-	2	226	c.38G>T	c.(37-39)GGT>GTT	p.G13V	HRAS_uc010qvw.1_Missense_Mutation_p.G13V|HRAS_uc010qvx.1_Missense_Mutation_p.G13V|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334
AHNAK	79026	broad.mit.edu	37	11	62293297	62293297	+	Silent	SNP	C	G	G			2011-2345:2012-332-T	g.chr11:62293297C>G	uc001ntl.2	-	5	8892	c.8592G>C	c.(8590-8592)CTG>CTC	p.L2864L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
FANCM	57697	broad.mit.edu	37	14	45605818	45605818	+	Intron	SNP	C	T	T	rs2033385	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr14:45605818C>T	uc001wwd.3	+						FANCM_uc001wwc.2_Intron|FANCM_uc010anf.2_Intron|FKBP3_uc010tqf.1_5'Flank	NM_020937	NP_065988
FANCM	57697	broad.mit.edu	37	14	45664721	45664721	+	Intron	SNP	C	G	G	rs58790242	by1000genomes	2011-2345:2012-332-T	g.chr14:45664721C>G	uc001wwd.3	+						FANCM_uc010anf.2_Intron|FANCM_uc001wwe.3_Intron|FANCM_uc010ang.2_Missense_Mutation_p.S1007C	NM_020937	NP_065988
SYNE2	23224	broad.mit.edu	37	14	64674981	64674981	+	Intron	SNP	T	C	C	rs1152595	by1000genomes	2011-2345:2012-332-T	g.chr14:64674981T>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_5'Flank	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64675895	64675895	+	Intron	SNP	C	T	T	rs1152593	by1000genomes	2011-2345:2012-332-T	g.chr14:64675895C>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_5'Flank	NM_015180	NP_055995
ZNF276	92822	broad.mit.edu	37	16	89805261	89805261	+	3'UTR	SNP	A	G	G	rs1800359	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr16:89805261A>G	uc002fos.3	+	11					ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|FANCA_uc002fou.1_Intron|FANCA_uc010vpn.1_Intron	NM_001113525	NP_001106997
FANCA	2175	broad.mit.edu	37	16	89806347	89806347	+	Intron	SNP	A	T	T	rs7195906	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr16:89806347A>T	uc002fou.1	-						ZNF276_uc010ciq.2_3'UTR|ZNF276_uc002foq.3_3'UTR|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_3'UTR|ZNF276_uc010cis.2_3'UTR|ZNF276_uc002fos.3_3'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_3'UTR|FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_Missense_Mutation_p.I416N	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89818708	89818708	+	Intron	SNP	G	C	C			2011-2345:2012-332-T	g.chr16:89818708G>C	uc002fou.1	-						FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89842029	89842029	+	Intron	SNP	C	G	G	rs3785275	by1000genomes	2011-2345:2012-332-T	g.chr16:89842029C>G	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89846195	89846195	+	Intron	SNP	A	G	G	rs1800335	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr16:89846195A>G	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89849583	89849583	+	Intron	SNP	C	T	T	rs2239360	by1000genomes	2011-2345:2012-332-T	g.chr16:89849583C>T	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89857964	89857964	+	Intron	SNP	T	C	C	rs1800330	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr16:89857964T>C	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89858024	89858024	+	Intron	SNP	A	G	G	rs6500450	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr16:89858024A>G	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89858525	89858525	+	Intron	SNP	C	G	G	rs1800287	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr16:89858525C>G	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89866160	89866160	+	Intron	SNP	A	G	G	rs7186192	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr16:89866160A>G	uc002fou.1	-						FANCA_uc010vpn.1_Intron|FANCA_uc002fov.1_Intron|FANCA_uc002fow.1_Intron|FANCA_uc002fox.1_Intron|FANCA_uc010ciu.1_Intron|FANCA_uc002foy.2_Intron	NM_000135	NP_000126
RPH3AL	9501	broad.mit.edu	37	17	138370	138370	+	Intron	SNP	G	A	A	rs146534797	by1000genomes	2011-2345:2012-332-T	g.chr17:138370G>A	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
RPTOR	57521	broad.mit.edu	37	17	78904339	78904339	+	Intron	SNP	T	G	G			2011-2345:2012-332-T	g.chr17:78904339T>G	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
DSEL	92126	broad.mit.edu	37	18	65180782	65180782	+	Missense_Mutation	SNP	C	G	G			2011-2345:2012-332-T	g.chr18:65180782C>G	uc002lke.1	-	2	2318	c.1094G>C	c.(1093-1095)GGA>GCA	p.G365A		NM_032160	NP_115536
APOB	338	broad.mit.edu	37	2	21225300	21225300	+	Missense_Mutation	SNP	C	T	T			2011-2345:2012-332-T	g.chr2:21225300C>T	uc002red.2	-	29	13122	c.12994G>A	c.(12994-12996)GAG>AAG	p.E4332K		NM_000384	NP_000375
RMND5A	64795	broad.mit.edu	37	2	87641714	87641714	+	Intron	SNP	C	G	G			2011-2345:2012-332-T	g.chr2:87641714C>G	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141708021	141708021	+	Intron	SNP	T	A	A	rs6706503	by1000genomes	2011-2345:2012-332-T	g.chr2:141708021T>A	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
NFE2L2	4780	broad.mit.edu	37	2	178129729	178129729	+	5'UTR	SNP	C	T	T			2011-2345:2012-332-T	g.chr2:178129729C>T	uc002ulh.3	-	1					NFE2L2_uc002ulg.3_5'Flank|NFE2L2_uc010zfa.1_5'Flank|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_5'Flank|NFE2L2_uc010frb.2_5'Flank	NM_006164	NP_006155
NFE2L2	4780	broad.mit.edu	37	2	178129972	178129972	+	5'Flank	SNP	C	T	T			2011-2345:2012-332-T	g.chr2:178129972C>T	uc002ulh.3	-						NFE2L2_uc002ulg.3_5'Flank|NFE2L2_uc010zfa.1_5'Flank|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_5'Flank|NFE2L2_uc010frb.2_5'Flank	NM_006164	NP_006155
TTN	7273	broad.mit.edu	37	2	179476315	179476315	+	Nonsense_Mutation	SNP	C	A	A			2011-2345:2012-332-T	g.chr2:179476315C>A	uc010zfg.1	-	218	43161	c.42937G>T	c.(42937-42939)GGA>TGA	p.G14313*	uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.G8008*|TTN_uc010zfi.1_Nonsense_Mutation_p.G7941*|TTN_uc010zfj.1_Nonsense_Mutation_p.G7816*	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179476462	179476462	+	Intron	SNP	T	C	C			2011-2345:2012-332-T	g.chr2:179476462T>C	uc010zfg.1	-						uc002ump.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
STAT1	6772	broad.mit.edu	37	2	191844593	191844593	+	Splice_Site	SNP	C	G	G			2011-2345:2012-332-T	g.chr2:191844593C>G	uc002usj.2	-	20	2021	c.1633_splice	c.e20-1	p.E545_splice	STAT1_uc010fse.1_Splice_Site_p.E545_splice|STAT1_uc002usk.2_Splice_Site_p.E545_splice|STAT1_uc002usl.2_Splice_Site_p.E547_splice	NM_007315	NP_009330
CASP8	841	broad.mit.edu	37	2	202126615	202126615	+	Intron	SNP	A	G	G	rs1861270	by1000genomes	2011-2345:2012-332-T	g.chr2:202126615A>G	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxs.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc010ftd.1_Intron|CASP8_uc002uxv.1_Intron|CASP8_uc002uxw.1_Intron	NM_033355	NP_203519
PAX3	5077	broad.mit.edu	37	2	223096768	223096768	+	Intron	SNP	G	A	A			2011-2345:2012-332-T	g.chr2:223096768G>A	uc010fwo.2	-						PAX3_uc002vmt.1_Intron|PAX3_uc002vmy.1_Intron|PAX3_uc002vmv.1_Intron|PAX3_uc002vmw.1_Intron|PAX3_uc002vmx.1_Intron	NM_181457	NP_852122
CLTCL1	8218	broad.mit.edu	37	22	19178773	19178773	+	Intron	SNP	C	G	G			2011-2345:2012-332-T	g.chr22:19178773C>G	uc002zpb.2	-						CLTCL1_uc011agv.1_Intron|CLTCL1_uc011agw.1_Intron|CLTCL1_uc011agt.1_Intron|CLTCL1_uc011agu.1_Intron	NM_007098	NP_009029
GRAMD4	23151	broad.mit.edu	37	22	47071120	47071120	+	Intron	SNP	C	G	G			2011-2345:2012-332-T	g.chr22:47071120C>G	uc003bhx.2	+						GRAMD4_uc010had.2_Intron|GRAMD4_uc003bhy.2_Intron	NM_015124	NP_055939
MST1R	4486	broad.mit.edu	37	3	49925132	49925132	+	Intron	SNP	C	G	G			2011-2345:2012-332-T	g.chr3:49925132C>G	uc003cxy.3	-						MST1R_uc011bdc.1_Intron	NM_002447	NP_002438
BBX	56987	broad.mit.edu	37	3	107396287	107396287	+	Intron	SNP	T	G	G	rs13326227	by1000genomes	2011-2345:2012-332-T	g.chr3:107396287T>G	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Intron|BBX_uc003dwm.3_Intron	NM_001142568	NP_001136040
TP63	8626	broad.mit.edu	37	3	189587274	189587274	+	Intron	SNP	A	G	G	rs6790167	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr3:189587274A>G	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189590824	189590824	+	Intron	SNP	G	C	C	rs9840359	byFrequency;by1000genomes	2011-2345:2012-332-T	g.chr3:189590824G>C	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_3'UTR|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron	NM_003722	NP_003713
REST	5978	broad.mit.edu	37	4	57777162	57777162	+	Missense_Mutation	SNP	G	C	C			2011-2345:2012-332-T	g.chr4:57777162G>C	uc003hch.2	+	2	705	c.358G>C	c.(358-360)GAA>CAA	p.E120Q	REST_uc003hci.2_Missense_Mutation_p.E120Q|REST_uc003hcj.1_Missense_Mutation_p.E120Q|REST_uc010ihf.2_5'UTR	NM_005612	NP_005603
SMAD1	4086	broad.mit.edu	37	4	146435841	146435841	+	Missense_Mutation	SNP	G	A	A			2011-2345:2012-332-T	g.chr4:146435841G>A	uc003ikc.2	+	2	492	c.76G>A	c.(76-78)GAA>AAA	p.E26K	SMAD1_uc003ikd.2_Missense_Mutation_p.E26K|SMAD1_uc010iov.2_Missense_Mutation_p.E26K|SMAD1_uc011cic.1_Missense_Mutation_p.E26K	NM_005900	NP_005891
HLA-G	3135	broad.mit.edu	37	6	29894128	29894128	+	Intron	SNP	C	T	T	rs113752838		2011-2345:2012-332-T	g.chr6:29894128C>T	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_RNA	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29896484	29896484	+	Intron	SNP	G	C	C	rs113598755		2011-2345:2012-332-T	g.chr6:29896484G>C	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|uc003noi.2_Intron	NM_002127	NP_002118
HLA-A	3105	broad.mit.edu	37	6	29911684	29911684	+	Intron	SNP	C	T	T	rs9260164		2011-2345:2012-332-T	g.chr6:29911684C>T	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Intron|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_Intron	NM_002116	NP_002107
HLA-A	3105	broad.mit.edu	37	6	29912510	29912510	+	Intron	SNP	T	G	G	rs1632885		2011-2345:2012-332-T	g.chr6:29912510T>G	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
SYNE1	23345	broad.mit.edu	37	6	152577752	152577752	+	Intron	SNP	T	C	C	rs17082389	by1000genomes	2011-2345:2012-332-T	g.chr6:152577752T>C	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
ADCYAP1R1	117	broad.mit.edu	37	7	31141863	31141863	+	Intron	SNP	C	G	G			2011-2345:2012-332-T	g.chr7:31141863C>G	uc003tca.1	+						ADCYAP1R1_uc003tcb.1_Intron|ADCYAP1R1_uc003tcc.1_Intron|ADCYAP1R1_uc003tcd.1_Intron|ADCYAP1R1_uc003tce.1_Intron|ADCYAP1R1_uc003tcf.1_Intron	NM_001118	NP_001109
EZH2	2146	broad.mit.edu	37	7	148514474	148514474	+	Missense_Mutation	SNP	G	A	A			2011-2345:2012-332-T	g.chr7:148514474G>A	uc003wfd.1	-	11	1401	c.1235C>T	c.(1234-1236)TCT>TTT	p.S412F	EZH2_uc011kug.1_Missense_Mutation_p.S403F|EZH2_uc003wfb.1_Missense_Mutation_p.S417F|EZH2_uc003wfc.1_Missense_Mutation_p.S373F|EZH2_uc011kuh.1_Missense_Mutation_p.S403F|EZH2_uc011kui.1_3'UTR	NM_004456	NP_004447
MLL3	58508	broad.mit.edu	37	7	151846285	151846285	+	Intron	SNP	C	A	A			2011-2345:2012-332-T	g.chr7:151846285C>A	uc003wla.2	-						MLL3_uc003wkz.2_Intron|MLL3_uc003wkx.2_Intron|MLL3_uc003wky.2_Intron	NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	158066718	158066718	+	Intron	SNP	C	A	A	rs113350652	by1000genomes	2011-2345:2012-332-T	g.chr7:158066718C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
RIMS2	9699	broad.mit.edu	37	8	104922392	104922392	+	Missense_Mutation	SNP	C	T	T			2011-2345:2012-332-T	g.chr8:104922392C>T	uc003yls.2	+	3	1230	c.989C>T	c.(988-990)ACG>ATG	p.T330M	RIMS2_uc003ylp.2_Missense_Mutation_p.T552M|RIMS2_uc003ylw.2_Missense_Mutation_p.T360M|RIMS2_uc003ylq.2_Missense_Mutation_p.T360M|RIMS2_uc003ylr.2_Intron|RIMS2_uc003ylt.2_5'Flank	NM_014677	NP_055492
FANCG	2189	broad.mit.edu	37	9	35077441	35077441	+	Intron	SNP	T	C	C	rs554098	by1000genomes	2011-2345:2012-332-T	g.chr9:35077441T>C	uc003zwb.1	-						FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_Intron|FANCG_uc011lot.1_Intron	NM_004629	NP_004620
NOTCH1	4851	broad.mit.edu	37	9	139399070	139399070	+	Intron	SNP	G	A	A	rs11574903	by1000genomes	2011-2345:2012-332-T	g.chr9:139399070G>A	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
FANCB	2187	broad.mit.edu	37	X	14891258	14891258	+	5'Flank	SNP	G	T	T	rs2285490	by1000genomes	2011-2345:2012-332-T	g.chrX:14891258G>T	uc004cwg.1	-						FANCB_uc004cwh.1_5'Flank|MOSPD2_uc004cwi.2_5'Flank	NM_001018113	NP_001018123
DDX3X	1654	broad.mit.edu	37	X	41201989	41201989	+	Splice_Site	SNP	G	T	T			2011-2345:2012-332-T	g.chrX:41201989G>T	uc004dfe.2	+	6	1299	c.444_splice	c.e6-1	p.Q148_splice	DDX3X_uc010nhf.1_Splice_Site_p.Q132_splice|DDX3X_uc004dff.2_Splice_Site_p.Q148_splice|DDX3X_uc011mkq.1_Splice_Site_p.Q132_splice|DDX3X_uc011mkr.1_Splice_Site_p.Q148_splice|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_Splice_Site|DDX3X_uc011mkt.1_Splice_Site	NM_001356	NP_001347
HEPH	9843	broad.mit.edu	37	X	65474774	65474774	+	Intron	SNP	C	T	T	rs651494	by1000genomes	2011-2345:2012-332-T	g.chrX:65474774C>T	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron|HEPH_uc010nks.2_Intron	NM_138737	NP_620074
KIF1B	23095	broad.mit.edu	37	1	10397487	10397487	+	Silent	SNP	G	A	A			2011-2346:2012-301-T	g.chr1:10397487G>A	uc001aqx.3	+	31	3520	c.3318G>A	c.(3316-3318)GAG>GAA	p.E1106E	KIF1B_uc001aqw.3_Silent_p.E1060E|KIF1B_uc001aqy.2_Silent_p.E1080E|KIF1B_uc001aqz.2_Silent_p.E1106E|KIF1B_uc001ara.2_Silent_p.E1066E|KIF1B_uc001arb.2_Silent_p.E1092E	NM_015074	NP_055889
ARHGAP30	257106	broad.mit.edu	37	1	161039829	161039829	+	5'Flank	SNP	A	G	G			2011-2346:2012-301-T	g.chr1:161039829A>G	uc001fxl.2	-						ARHGAP30_uc001fxk.2_5'Flank|ARHGAP30_uc001fxm.2_5'Flank|ARHGAP30_uc009wtx.2_5'Flank|ARHGAP30_uc001fxn.1_5'Flank	NM_001025598	NP_001020769
IRF6	3664	broad.mit.edu	37	1	209979518	209979518	+	5'Flank	SNP	T	A	A	rs12403006	by1000genomes	2011-2346:2012-301-T	g.chr1:209979518T>A	uc001hhq.1	-						IRF6_uc010psm.1_5'Flank|IRF6_uc009xct.1_5'Flank	NM_006147	NP_006138
IRF6	3664	broad.mit.edu	37	1	209979529	209979529	+	5'Flank	SNP	A	T	T	rs34743335	by1000genomes	2011-2346:2012-301-T	g.chr1:209979529A>T	uc001hhq.1	-						IRF6_uc010psm.1_5'Flank|IRF6_uc009xct.1_5'Flank	NM_006147	NP_006138
MAML2	84441	broad.mit.edu	37	11	96075143	96075143	+	5'UTR	SNP	G	C	C			2011-2346:2012-301-T	g.chr11:96075143G>C	uc001pfw.1	-	1						NM_032427	NP_115803
PZP	5858	broad.mit.edu	37	12	9305962	9305962	+	Intron	SNP	C	T	T			2011-2346:2012-301-T	g.chr12:9305962C>T	uc001qvl.2	-						PZP_uc009zgl.2_Intron	NM_002864	NP_002855
LMF1	64788	broad.mit.edu	37	16	908722	908722	+	Intron	SNP	C	T	T			2011-2346:2012-301-T	g.chr16:908722C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
RPTOR	57521	broad.mit.edu	37	17	78904339	78904339	+	Intron	SNP	T	G	G			2011-2346:2012-301-T	g.chr17:78904339T>G	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
NFATC1	4772	broad.mit.edu	37	18	77177187	77177187	+	Intron	SNP	T	G	G	rs2667440		2011-2346:2012-301-T	g.chr18:77177187T>G	uc010xfg.1	+						NFATC1_uc002lnc.1_Intron|NFATC1_uc010xff.1_Intron|NFATC1_uc002lnd.2_Intron|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfi.1_Intron|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Intron|NFATC1_uc002lng.2_Intron|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153
RMND5A	64795	broad.mit.edu	37	2	87645932	87645932	+	Intron	SNP	C	T	T			2011-2346:2012-301-T	g.chr2:87645932C>T	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141526962	141526962	+	Intron	SNP	T	C	C			2011-2346:2012-301-T	g.chr2:141526962T>C	uc002tvj.1	-							NM_018557	NP_061027
TTLL8	164714	broad.mit.edu	37	22	50467800	50467800	+	Intron	SNP	C	T	T	rs111953900	by1000genomes	2011-2346:2012-301-T	g.chr22:50467800C>T	uc011ark.1	-							NM_001080447	NP_001073916
CNTN6	27255	broad.mit.edu	37	3	1424602	1424602	+	Intron	SNP	G	A	A			2011-2346:2012-301-T	g.chr3:1424602G>A	uc003boz.2	+						CNTN6_uc011asj.1_Intron|CNTN6_uc003bpa.2_Intron	NM_014461	NP_055276
MUC4	4585	broad.mit.edu	37	3	195502852	195502852	+	Intron	SNP	C	T	T			2011-2346:2012-301-T	g.chr3:195502852C>T	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FGFR3	2261	broad.mit.edu	37	4	1803020	1803020	+	Intron	SNP	C	A	A			2011-2346:2012-301-T	g.chr4:1803020C>A	uc003gdr.3	+						FGFR3_uc003gdu.2_Intron|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Intron|FGFR3_uc010icb.1_5'Flank|FGFR3_uc003gdt.1_5'Flank	NM_000142	NP_000133
FGFR3	2261	broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	G	G	rs121913483		2011-2346:2012-301-T	g.chr4:1803568C>G	uc003gdr.3	+	7	1002	c.746C>G	c.(745-747)TCC>TGC	p.S249C	FGFR3_uc003gdu.2_Missense_Mutation_p.S249C|FGFR3_uc003gds.3_Missense_Mutation_p.S249C|FGFR3_uc003gdq.3_Missense_Mutation_p.S249C|FGFR3_uc010icb.1_Missense_Mutation_p.S91C|FGFR3_uc003gdt.1_Missense_Mutation_p.S91C	NM_000142	NP_000133
GABRA4	2557	broad.mit.edu	37	4	46995499	46995499	+	5'UTR	SNP	G	A	A			2011-2346:2012-301-T	g.chr4:46995499G>A	uc003gxg.2	-	1						NM_000809	NP_000800
HLA-G	3135	broad.mit.edu	37	6	29896636	29896636	+	Intron	SNP	C	T	T	rs116492953	by1000genomes	2011-2346:2012-301-T	g.chr6:29896636C>T	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|uc003noi.2_Intron	NM_002127	NP_002118
FANCE	2178	broad.mit.edu	37	6	35430844	35430844	+	Intron	SNP	G	A	A			2011-2346:2012-301-T	g.chr6:35430844G>A	uc003oko.1	+						FANCE_uc010jvw.1_Intron	NM_021922	NP_068741
SYNE1	23345	broad.mit.edu	37	6	152762573	152762573	+	Intron	SNP	C	T	T			2011-2346:2012-301-T	g.chr6:152762573C>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron	NM_182961	NP_892006
VPS41	27072	broad.mit.edu	37	7	38781699	38781699	+	Missense_Mutation	SNP	G	T	T			2011-2346:2012-301-T	g.chr7:38781699G>T	uc003tgy.2	-	25	2171	c.2145C>A	c.(2143-2145)AAC>AAA	p.N715K	VPS41_uc003tgz.2_Missense_Mutation_p.N690K|VPS41_uc010kxn.2_Missense_Mutation_p.N626K|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211
PCM1	5108	broad.mit.edu	37	8	17823804	17823804	+	Intron	SNP	C	T	T			2011-2346:2012-301-T	g.chr8:17823804C>T	uc003wyi.3	+						PCM1_uc011kyh.1_Intron|PCM1_uc003wyj.3_Intron	NM_006197	NP_006188
TSPAN9	10867	broad.mit.edu	37	12	3378160	3378160	+	Intron	SNP	G	A	A			2011-2347:2012-300-T	g.chr12:3378160G>A	uc001qlp.2	+							NM_006675	NP_006666
FLT3	2322	broad.mit.edu	37	13	28623550	28623550	+	Missense_Mutation	SNP	G	C	C			2011-2347:2012-300-T	g.chr13:28623550G>C	uc001urw.2	-	8	1089	c.1007C>G	c.(1006-1008)CCC>CGC	p.P336R	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.P336R	NM_004119	NP_004110
DCLK1	9201	broad.mit.edu	37	13	36532287	36532287	+	Intron	SNP	C	T	T			2011-2347:2012-300-T	g.chr13:36532287C>T	uc001uvf.2	-							NM_004734	NP_004725
TLN2	83660	broad.mit.edu	37	15	62999269	62999269	+	Intron	SNP	G	C	C			2011-2347:2012-300-T	g.chr15:62999269G>C	uc002alb.3	+							NM_015059	NP_055874
BLM	641	broad.mit.edu	37	15	91341433	91341433	+	Missense_Mutation	SNP	G	C	C			2011-2347:2012-300-T	g.chr15:91341433G>C	uc002bpr.2	+	17	3321	c.3224G>C	c.(3223-3225)AGA>ACA	p.R1075T	BLM_uc010uqh.1_Missense_Mutation_p.R1075T|BLM_uc010uqi.1_Missense_Mutation_p.R700T|BLM_uc010bnx.2_Missense_Mutation_p.R1075T|BLM_uc002bpt.2_Missense_Mutation_p.R50T	NM_000057	NP_000048
RPH3AL	9501	broad.mit.edu	37	17	83948	83948	+	Intron	SNP	G	A	A			2011-2347:2012-300-T	g.chr17:83948G>A	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
LRRC37B	114659	broad.mit.edu	37	17	30347763	30347763	+	5'Flank	SNP	G	C	C			2011-2347:2012-300-T	g.chr17:30347763G>C	uc002hgu.2	+						LRRC37B_uc010wbx.1_5'UTR|LRRC37B_uc010csu.2_5'Flank	NM_052888	NP_443120
MED1	5469	broad.mit.edu	37	17	37566045	37566045	+	Missense_Mutation	SNP	G	C	C			2011-2347:2012-300-T	g.chr17:37566045G>C	uc002hrv.3	-	17	2641	c.2429C>G	c.(2428-2430)TCT>TGT	p.S810C	MED1_uc010wee.1_Missense_Mutation_p.S638C|MED1_uc002hru.2_Intron	NM_004774	NP_004765
RPTOR	57521	broad.mit.edu	37	17	78904347	78904347	+	Intron	SNP	A	C	C			2011-2347:2012-300-T	g.chr17:78904347A>C	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
DCC	1630	broad.mit.edu	37	18	49866831	49866831	+	5'UTR	SNP	C	G	G			2011-2347:2012-300-T	g.chr18:49866831C>G	uc002lfe.1	+	1						NM_005215	NP_005206
PHLPP1	23239	broad.mit.edu	37	18	60384460	60384460	+	Missense_Mutation	SNP	C	G	G			2011-2347:2012-300-T	g.chr18:60384460C>G	uc002lis.2	+	2	186	c.8C>G	c.(7-9)TCG>TGG	p.S3W		NM_194449	NP_919431
NOTCH3	4854	broad.mit.edu	37	19	15296283	15296283	+	Intron	SNP	G	T	T			2011-2347:2012-300-T	g.chr19:15296283G>T	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
RMND5A	64795	broad.mit.edu	37	2	87656445	87656445	+	Intron	SNP	G	A	A			2011-2347:2012-300-T	g.chr2:87656445G>A	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141259340	141259340	+	Silent	SNP	C	T	T			2011-2347:2012-300-T	g.chr2:141259340C>T	uc002tvj.1	-	55	9738	c.8766G>A	c.(8764-8766)GAG>GAA	p.E2922E		NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179600532	179600532	+	Missense_Mutation	SNP	C	G	G			2011-2347:2012-300-T	g.chr2:179600532C>G	uc010zfg.1	-	47	11133	c.10909G>C	c.(10909-10911)GAG>CAG	p.E3637Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E298Q	NM_133378	NP_596869
PARD3B	117583	broad.mit.edu	37	2	205435571	205435571	+	Intron	SNP	G	A	A			2011-2347:2012-300-T	g.chr2:205435571G>A	uc002var.1	+						PARD3B_uc010fub.1_Intron|PARD3B_uc002vao.1_Intron|PARD3B_uc002vap.1_Intron|PARD3B_uc002vaq.1_Intron	NM_152526	NP_689739
MST1R	4486	broad.mit.edu	37	3	49936648	49936648	+	Silent	SNP	G	A	A			2011-2347:2012-300-T	g.chr3:49936648G>A	uc003cxy.3	-	2	1543	c.1279C>T	c.(1279-1281)CTG>TTG	p.L427L	MST1R_uc011bdd.1_Silent_p.L427L|MST1R_uc011bde.1_Silent_p.L427L|MST1R_uc011bdf.1_Intron|MST1R_uc011bdg.1_Silent_p.L427L|MST1R_uc011bdc.1_5'Flank	NM_002447	NP_002438
TP63	8626	broad.mit.edu	37	3	189590662	189590662	+	Silent	SNP	G	A	A			2011-2347:2012-300-T	g.chr3:189590662G>A	uc003fry.2	+	10	1316	c.1227G>A	c.(1225-1227)GAG>GAA	p.E409E	TP63_uc003frx.2_Silent_p.E409E|TP63_uc003frz.2_Silent_p.E409E|TP63_uc010hzc.1_Silent_p.E409E|TP63_uc003fsa.2_Silent_p.E315E|TP63_uc003fsb.2_Silent_p.E315E|TP63_uc003fsc.2_Silent_p.E315E|TP63_uc003fsd.2_Silent_p.E315E|TP63_uc010hzd.1_Silent_p.E230E	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195498249	195498249	+	Intron	SNP	G	A	A	rs13087854		2011-2347:2012-300-T	g.chr3:195498249G>A	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FAT1	2195	broad.mit.edu	37	4	187627921	187627921	+	Missense_Mutation	SNP	C	T	T			2011-2347:2012-300-T	g.chr4:187627921C>T	uc003izf.2	-	2	3249	c.3061G>A	c.(3061-3063)GAG>AAG	p.E1021K	FAT1_uc010iso.1_Missense_Mutation_p.E1021K	NM_005245	NP_005236
BTNL9	153579	broad.mit.edu	37	5	180473002	180473002	+	Intron	SNP	C	T	T			2011-2347:2012-300-T	g.chr5:180473002C>T	uc003mmt.2	+						BTNL9_uc011dhi.1_Intron	NM_152547	NP_689760
DST	667	broad.mit.edu	37	6	56480330	56480330	+	Intron	SNP	G	C	C			2011-2347:2012-300-T	g.chr6:56480330G>C	uc003pdf.2	-						DST_uc003pcz.3_Intron|DST_uc011dxj.1_Intron|DST_uc011dxk.1_Intron|DST_uc003pcy.3_Intron|DST_uc003pdb.2_Intron|DST_uc003pdc.3_Silent_p.L2645L	NM_001144769	NP_001138241
EZH2	2146	broad.mit.edu	37	7	148514466	148514466	+	Missense_Mutation	SNP	G	C	C			2011-2347:2012-300-T	g.chr7:148514466G>C	uc003wfd.1	-	11	1409	c.1243C>G	c.(1243-1245)CAA>GAA	p.Q415E	EZH2_uc011kug.1_Missense_Mutation_p.Q406E|EZH2_uc003wfb.1_Missense_Mutation_p.Q420E|EZH2_uc003wfc.1_Missense_Mutation_p.Q376E|EZH2_uc011kuh.1_Missense_Mutation_p.Q406E|EZH2_uc011kui.1_3'UTR	NM_004456	NP_004447
PTPRN2	5799	broad.mit.edu	37	7	157940998	157940999	+	Intron	DNP	GT	AC	AC			2011-2347:2012-300-T	g.chr7:157940998_157940999GT>AC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTK2B	2185	broad.mit.edu	37	8	27300363	27300363	+	Intron	SNP	C	G	G			2011-2347:2012-300-T	g.chr8:27300363C>G	uc003xfn.1	+						PTK2B_uc003xfo.1_Intron|PTK2B_uc003xfp.1_Intron|PTK2B_uc003xfq.1_Intron|PTK2B_uc003xfr.1_Intron	NM_173174	NP_775266
CSMD3	114788	broad.mit.edu	37	8	113275982	113275982	+	Missense_Mutation	SNP	C	G	G			2011-2347:2012-300-T	g.chr8:113275982C>G	uc003ynu.2	-	61	9907	c.9748G>C	c.(9748-9750)GAC>CAC	p.D3250H	CSMD3_uc003yns.2_Missense_Mutation_p.D2452H|CSMD3_uc003ynt.2_Missense_Mutation_p.D3210H|CSMD3_uc011lhx.1_Missense_Mutation_p.D3081H	NM_198123	NP_937756
FANCG	2189	broad.mit.edu	37	9	35079934	35079934	+	5'UTR	SNP	G	A	A			2011-2347:2012-300-T	g.chr9:35079934G>A	uc003zwb.1	-	1					FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_5'Flank	NM_004629	NP_004620
COL5A1	1289	broad.mit.edu	37	9	137546456	137546456	+	Intron	SNP	A	G	G	rs138553521	by1000genomes	2011-2347:2012-300-T	g.chr9:137546456A>G	uc004cfe.2	+							NM_000093	NP_000084
DDX3X	1654	broad.mit.edu	37	X	41203020	41203020	+	Missense_Mutation	SNP	C	T	T			2011-2347:2012-300-T	g.chrX:41203020C>T	uc004dfe.2	+	8	1565	c.710C>T	c.(709-711)CCC>CTC	p.P237L	DDX3X_uc010nhf.1_Missense_Mutation_p.P221L|DDX3X_uc004dff.2_Missense_Mutation_p.P237L|DDX3X_uc011mkq.1_Missense_Mutation_p.P221L|DDX3X_uc011mkr.1_Missense_Mutation_p.P237L|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_Intron	NM_001356	NP_001347
MTOR	2475	broad.mit.edu	37	1	11190702	11190702	+	Missense_Mutation	SNP	T	G	G			2011-2348:2012-331-T	g.chr1:11190702T>G	uc001asd.2	-	39	5618	c.5497A>C	c.(5497-5499)ACC>CCC	p.T1833P	MTOR_uc001asc.2_Missense_Mutation_p.T38P	NM_004958	NP_004949
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		2011-2348:2012-331-T	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515
YY1AP1	55249	broad.mit.edu	37	1	155657840	155657840	+	Intron	SNP	C	A	A			2011-2348:2012-331-T	g.chr1:155657840C>A	uc001fln.2	-						YY1AP1_uc010pgi.1_Intron|YY1AP1_uc001flh.2_Intron|YY1AP1_uc009wqt.2_Intron|YY1AP1_uc001flk.2_Intron|YY1AP1_uc001fll.2_Intron|YY1AP1_uc009wqv.2_Intron|YY1AP1_uc001flm.2_Intron|YY1AP1_uc001fli.2_Intron|YY1AP1_uc009wqu.2_Intron|YY1AP1_uc001flj.2_Intron|YY1AP1_uc009wqw.2_Intron|YY1AP1_uc001flo.2_Intron|YY1AP1_uc001flp.2_Intron|YY1AP1_uc010pgj.1_Intron|YY1AP1_uc009wqx.2_Intron|YY1AP1_uc010pgk.1_Intron|DAP3_uc001flq.2_5'Flank|DAP3_uc001flr.2_5'Flank|DAP3_uc001fls.2_5'Flank|DAP3_uc010pgl.1_5'Flank|DAP3_uc001flt.2_5'Flank|DAP3_uc001flu.2_5'Flank|DAP3_uc010pgm.1_5'Flank	NM_139118	NP_620829
USH2A	7399	broad.mit.edu	37	1	216420519	216420519	+	Silent	SNP	A	G	G			2011-2348:2012-331-T	g.chr1:216420519A>G	uc001hku.1	-	13	2604	c.2217T>C	c.(2215-2217)TTT>TTC	p.F739F	USH2A_uc001hkv.2_Silent_p.F739F	NM_206933	NP_996816
CUBN	8029	broad.mit.edu	37	10	17171851	17171851	+	5'Flank	SNP	C	A	A			2011-2348:2012-331-T	g.chr10:17171851C>A	uc001ioo.2	-							NM_001081	NP_001072
NAV3	89795	broad.mit.edu	37	12	78579498	78579498	+	Intron	SNP	C	G	G			2011-2348:2012-331-T	g.chr12:78579498C>G	uc001syp.2	+						NAV3_uc001syo.2_Intron|NAV3_uc010sub.1_Intron|NAV3_uc009zsf.2_Intron	NM_014903	NP_055718
GPR133	283383	broad.mit.edu	37	12	131555806	131555806	+	Intron	SNP	A	G	G			2011-2348:2012-331-T	g.chr12:131555806A>G	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron	NM_198827	NP_942122
BRCA2	675	broad.mit.edu	37	13	32918790	32918790	+	Missense_Mutation	SNP	G	A	A			2011-2348:2012-331-T	g.chr13:32918790G>A	uc001uub.1	+	12	7164	c.6937G>A	c.(6937-6939)GGC>AGC	p.G2313S		NM_000059	NP_000050
GPC5	2262	broad.mit.edu	37	13	92101179	92101179	+	Intron	SNP	A	C	C			2011-2348:2012-331-T	g.chr13:92101179A>C	uc010tif.1	+							NM_004466	NP_004457
MCF2L	23263	broad.mit.edu	37	13	113666142	113666142	+	Intron	SNP	T	C	C	rs9549339		2011-2348:2012-331-T	g.chr13:113666142T>C	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron	NM_001112732	NP_001106203
SYNE2	23224	broad.mit.edu	37	14	64606804	64606804	+	Intron	SNP	A	C	C			2011-2348:2012-331-T	g.chr14:64606804A>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_5'Flank	NM_015180	NP_055995
NRXN3	9369	broad.mit.edu	37	14	78869682	78869682	+	5'Flank	SNP	C	A	A			2011-2348:2012-331-T	g.chr14:78869682C>A	uc001xun.2	+						NRXN3_uc001xum.1_Intron	NM_004796	NP_004787
DICER1	23405	broad.mit.edu	37	14	95560306	95560306	+	Silent	SNP	G	A	A			2011-2348:2012-331-T	g.chr14:95560306G>A	uc001ydw.2	-	25	5465	c.5283C>T	c.(5281-5283)GTC>GTT	p.V1761V	DICER1_uc010avh.1_Silent_p.V659V|DICER1_uc001ydv.2_Silent_p.V1751V|DICER1_uc001ydx.2_Silent_p.V1761V	NM_030621	NP_085124
CDH11	1009	broad.mit.edu	37	16	65032825	65032825	+	Intron	SNP	G	T	T			2011-2348:2012-331-T	g.chr16:65032825G>T	uc002eoi.2	-						CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Intron|CDH11_uc010vin.1_Intron|CDH11_uc010vio.1_Intron	NM_001797	NP_001788
ABR	29	broad.mit.edu	37	17	1046461	1046461	+	Intron	SNP	G	A	A			2011-2348:2012-331-T	g.chr17:1046461G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1046469	1046469	+	Intron	SNP	G	A	A	rs112713679		2011-2348:2012-331-T	g.chr17:1046469G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
RSAD1	55316	broad.mit.edu	37	17	48553663	48553663	+	5'Flank	SNP	C	G	G			2011-2348:2012-331-T	g.chr17:48553663C>G	uc002iqw.1	+						RSAD1_uc010wmp.1_5'Flank|RSAD1_uc010wmq.1_5'Flank	NM_018346	NP_060816
C18orf1	753	broad.mit.edu	37	18	13262764	13262764	+	Intron	SNP	C	T	T			2011-2348:2012-331-T	g.chr18:13262764C>T	uc002ksa.2	+						C18orf1_uc002ksb.2_Intron	NM_181481	NP_852146
ZNF790	388536	broad.mit.edu	37	19	37310006	37310006	+	Nonsense_Mutation	SNP	G	A	A			2011-2348:2012-331-T	g.chr19:37310006G>A	uc002oew.2	-	5	1359	c.1240C>T	c.(1240-1242)CGA>TGA	p.R414*	uc002oev.1_Intron	NM_206894	NP_996777
ZNF880	400713	broad.mit.edu	37	19	52888348	52888348	+	Silent	SNP	A	T	T			2011-2348:2012-331-T	g.chr19:52888348A>T	uc002pzc.2	+	4	1564	c.1515A>T	c.(1513-1515)TCA>TCT	p.S505S		NM_001145434	NP_001138906
NLRP12	91662	broad.mit.edu	37	19	54318105	54318105	+	Intron	SNP	G	T	T			2011-2348:2012-331-T	g.chr19:54318105G>T	uc002qch.3	-						NLRP12_uc002qci.3_Intron|NLRP12_uc002qcj.3_Intron|NLRP12_uc002qck.3_Intron|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288
DNMT3A	1788	broad.mit.edu	37	2	25498449	25498449	+	Intron	SNP	G	T	T			2011-2348:2012-331-T	g.chr2:25498449G>T	uc002rgc.2	-						DNMT3A_uc002rgd.2_Intron|DNMT3A_uc010eyi.2_Intron	NM_022552	NP_072046
LRP1B	53353	broad.mit.edu	37	2	141291676	141291676	+	Missense_Mutation	SNP	C	A	A			2011-2348:2012-331-T	g.chr2:141291676C>A	uc002tvj.1	-	47	8648	c.7676G>T	c.(7675-7677)TGC>TTC	p.C2559F		NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141986779	141986779	+	Missense_Mutation	SNP	T	G	G			2011-2348:2012-331-T	g.chr2:141986779T>G	uc002tvj.1	-	6	1795	c.823A>C	c.(823-825)ACA>CCA	p.T275P	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
STAT1	6772	broad.mit.edu	37	2	191839974	191839974	+	Intron	SNP	C	T	T			2011-2348:2012-331-T	g.chr2:191839974C>T	uc002usj.2	-						STAT1_uc010fse.1_Intron	NM_007315	NP_009330
ESPNL	339768	broad.mit.edu	37	2	239028164	239028164	+	Intron	SNP	G	A	A			2011-2348:2012-331-T	g.chr2:239028164G>A	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
KRTAP6-3	337968	broad.mit.edu	37	21	31964804	31964804	+	Missense_Mutation	SNP	A	G	G			2011-2348:2012-331-T	g.chr21:31964804A>G	uc002yom.2	+	1	46	c.40A>G	c.(40-42)AGA>GGA	p.R14G		NM_181605	NP_853636
CHEK2	11200	broad.mit.edu	37	22	29137578	29137578	+	Intron	SNP	A	T	T			2011-2348:2012-331-T	g.chr22:29137578A>T	uc003adu.1	-						CHEK2_uc003adt.1_Intron|CHEK2_uc003adv.1_Intron|CHEK2_uc003adw.1_Intron|CHEK2_uc003adx.1_Intron|CHEK2_uc003ady.1_Intron|CHEK2_uc003adz.1_Intron|HSCB_uc003aea.2_5'Flank	NM_007194	NP_009125
TTLL8	164714	broad.mit.edu	37	22	50467759	50467759	+	Intron	SNP	C	A	A			2011-2348:2012-331-T	g.chr22:50467759C>A	uc011ark.1	-							NM_001080447	NP_001073916
CDH10	1008	broad.mit.edu	37	5	24644969	24644969	+	5'Flank	SNP	A	G	G			2011-2348:2012-331-T	g.chr5:24644969A>G	uc003jgr.1	-						CDH10_uc011cnu.1_5'Flank	NM_006727	NP_006718
RXFP3	51289	broad.mit.edu	37	5	33937278	33937278	+	Missense_Mutation	SNP	G	T	T			2011-2348:2012-331-T	g.chr5:33937278G>T	uc003jic.1	+	1	790	c.433G>T	c.(433-435)GAC>TAC	p.D145Y		NM_016568	NP_057652
PKHD1	5314	broad.mit.edu	37	6	51613178	51613178	+	Missense_Mutation	SNP	G	A	A			2011-2348:2012-331-T	g.chr6:51613178G>A	uc003pah.1	-	58	9512	c.9236C>T	c.(9235-9237)GCG>GTG	p.A3079V	PKHD1_uc010jzn.1_Missense_Mutation_p.A1062V|PKHD1_uc003pai.2_Missense_Mutation_p.A3079V	NM_138694	NP_619639
EPHA7	2045	broad.mit.edu	37	6	93965642	93965642	+	Silent	SNP	G	T	T			2011-2348:2012-331-T	g.chr6:93965642G>T	uc003poe.2	-	13	2527	c.2286C>A	c.(2284-2286)CGC>CGA	p.R762R	EPHA7_uc003pof.2_Silent_p.R757R|EPHA7_uc011eac.1_Silent_p.R758R	NM_004440	NP_004431
SCML4	256380	broad.mit.edu	37	6	108104071	108104071	+	Intron	SNP	C	G	G			2011-2348:2012-331-T	g.chr6:108104071C>G	uc010kdf.2	-						SCML4_uc003prz.3_Intron|SCML4_uc011eam.1_Intron	NM_198081	NP_932347
SMOC2	64094	broad.mit.edu	37	6	169014436	169014436	+	Intron	SNP	C	T	T	rs149703584	by1000genomes	2011-2348:2012-331-T	g.chr6:169014436C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
SRPK2	6733	broad.mit.edu	37	7	104807736	104807736	+	Intron	SNP	T	C	C			2011-2348:2012-331-T	g.chr7:104807736T>C	uc003vct.2	-						SRPK2_uc003vcu.2_Intron|SRPK2_uc003vcv.2_Intron|SRPK2_uc003vcw.1_Intron	NM_182691	NP_872633
UBR5	51366	broad.mit.edu	37	8	103309793	103309793	+	Missense_Mutation	SNP	C	T	T			2011-2348:2012-331-T	g.chr8:103309793C>T	uc003ykr.1	-	27	3499	c.3466G>A	c.(3466-3468)GGA>AGA	p.G1156R	UBR5_uc003yks.1_Missense_Mutation_p.G1156R	NM_015902	NP_056986
CSMD3	114788	broad.mit.edu	37	8	113304833	113304833	+	Missense_Mutation	SNP	C	T	T			2011-2348:2012-331-T	g.chr8:113304833C>T	uc003ynu.2	-	55	8880	c.8721G>A	c.(8719-8721)ATG>ATA	p.M2907I	CSMD3_uc003yns.2_Missense_Mutation_p.M2109I|CSMD3_uc003ynt.2_Missense_Mutation_p.M2867I|CSMD3_uc011lhx.1_Missense_Mutation_p.M2738I	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113564899	113564899	+	Missense_Mutation	SNP	G	A	A			2011-2348:2012-331-T	g.chr8:113564899G>A	uc003ynu.2	-	26	4444	c.4285C>T	c.(4285-4287)CCT>TCT	p.P1429S	CSMD3_uc003yns.2_Missense_Mutation_p.P701S|CSMD3_uc003ynt.2_Missense_Mutation_p.P1389S|CSMD3_uc011lhx.1_Missense_Mutation_p.P1325S	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113812529	113812529	+	Intron	SNP	A	T	T			2011-2348:2012-331-T	g.chr8:113812529A>T	uc003ynu.2	-						CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
FAM135B	51059	broad.mit.edu	37	8	139269029	139269029	+	Intron	SNP	T	C	C			2011-2348:2012-331-T	g.chr8:139269029T>C	uc003yuy.2	-						FAM135B_uc003yux.2_Intron|FAM135B_uc003yuz.2_Intron	NM_015912	NP_056996
TRAPPC9	83696	broad.mit.edu	37	8	140816597	140816597	+	Intron	SNP	G	C	C			2011-2348:2012-331-T	g.chr8:140816597G>C	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron	NM_001160372	NP_001153844
CDKN2A	1029	broad.mit.edu	37	9	21971003	21971004	+	Nonsense_Mutation	DNP	CA	AG	AG			2011-2348:2012-331-T	g.chr9:21971003_21971004CA>AG	uc003zpk.2	-	2	566_567	c.354_355TG>CT	c.(352-357)GCTGAG>GCCTAG	p.E119*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Nonstop_Mutation_p.*174L	NM_000077	NP_000068
CRLF2	64109	broad.mit.edu	37	X	1316492	1316492	+	Intron	SNP	C	T	T			2011-2348:2012-331-T	g.chrX:1316492C>T	uc004cpm.1	-								
SPTA1	6708	broad.mit.edu	37	1	158609712	158609712	+	Missense_Mutation	SNP	C	T	T			2011-2349:2012-299-T	g.chr1:158609712C>T	uc001fst.1	-	34	5022	c.4823G>A	c.(4822-4824)CGT>CAT	p.R1608H		NM_003126	NP_003117
GPR123	84435	broad.mit.edu	37	10	134891438	134891438	+	Intron	SNP	G	A	A			2011-2349:2012-299-T	g.chr10:134891438G>A	uc001llw.2	+								
TMEM132D	121256	broad.mit.edu	37	12	130184552	130184552	+	Silent	SNP	G	A	A			2011-2349:2012-299-T	g.chr12:130184552G>A	uc009zyl.1	-	2	1099	c.771C>T	c.(769-771)ATC>ATT	p.I257I		NM_133448	NP_597705
GOLGA3	2802	broad.mit.edu	37	12	133369751	133369751	+	Intron	SNP	C	T	T			2011-2349:2012-299-T	g.chr12:133369751C>T	uc001ukz.1	-						GOLGA3_uc001ula.1_Intron|GOLGA3_uc001ulb.2_Intron	NM_005895	NP_005886
BRCA2	675	broad.mit.edu	37	13	32953953	32953953	+	Missense_Mutation	SNP	G	T	T			2011-2349:2012-299-T	g.chr13:32953953G>T	uc001uub.1	+	23	9247	c.9020G>T	c.(9019-9021)AGA>ATA	p.R3007I		NM_000059	NP_000050
SYNE2	23224	broad.mit.edu	37	14	64682980	64682980	+	Missense_Mutation	SNP	G	C	C	rs140940287		2011-2349:2012-299-T	g.chr14:64682980G>C	uc001xgm.2	+	107	19578	c.19348G>C	c.(19348-19350)GAT>CAT	p.D6450H	SYNE2_uc001xgl.2_Missense_Mutation_p.D6473H|SYNE2_uc010apy.2_Missense_Mutation_p.D2835H|SYNE2_uc001xgn.2_Missense_Mutation_p.D1412H|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.D420H|SYNE2_uc001xgq.2_Missense_Mutation_p.D815H|SYNE2_uc001xgr.2_Missense_Mutation_p.D233H|SYNE2_uc010tsi.1_Missense_Mutation_p.D107H|SYNE2_uc001xgs.2_Missense_Mutation_p.D107H|SYNE2_uc001xgt.2_5'UTR	NM_015180	NP_055995
TLN2	83660	broad.mit.edu	37	15	63030405	63030405	+	Intron	SNP	G	A	A			2011-2349:2012-299-T	g.chr15:63030405G>A	uc002alb.3	+						TLN2_uc002alc.3_5'Flank	NM_015059	NP_055874
LMF1	64788	broad.mit.edu	37	16	909526	909526	+	Intron	SNP	T	G	G			2011-2349:2012-299-T	g.chr16:909526T>G	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
NXN	64359	broad.mit.edu	37	17	797141	797141	+	Intron	SNP	T	A	A	rs79660826		2011-2349:2012-299-T	g.chr17:797141T>A	uc002fsa.2	-						NXN_uc002fsb.1_Intron	NM_022463	NP_071908
BRCA1	672	broad.mit.edu	37	17	41219560	41219560	+	Intron	SNP	C	T	T	rs8176235	by1000genomes	2011-2349:2012-299-T	g.chr17:41219560C>T	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
CCDC57	284001	broad.mit.edu	37	17	80108642	80108642	+	Intron	SNP	C	T	T			2011-2349:2012-299-T	g.chr17:80108642C>T	uc002kdx.1	-						CCDC57_uc002kdy.2_Intron	NM_198082	NP_932348
ATP9B	374868	broad.mit.edu	37	18	76905668	76905668	+	Intron	SNP	G	C	C			2011-2349:2012-299-T	g.chr18:76905668G>C	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmy.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
TTN	7273	broad.mit.edu	37	2	179484441	179484441	+	Silent	SNP	G	T	T			2011-2349:2012-299-T	g.chr2:179484441G>T	uc010zfg.1	-	199	39123	c.38899C>A	c.(38899-38901)CGA>AGA	p.R12967R	TTN_uc010zfh.1_Silent_p.R6662R|TTN_uc010zfi.1_Silent_p.R6595R|TTN_uc010zfj.1_Silent_p.R6470R	NM_133378	NP_596869
CASP8	841	broad.mit.edu	37	2	202107233	202107233	+	Intron	SNP	G	C	C	rs10193121	by1000genomes	2011-2349:2012-299-T	g.chr2:202107233G>C	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxn.2_RNA	NM_033355	NP_203519
BMP7	655	broad.mit.edu	37	20	55793706	55793706	+	Intron	SNP	T	G	G			2011-2349:2012-299-T	g.chr20:55793706T>G	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
CHCHD6	84303	broad.mit.edu	37	3	126581912	126581912	+	Intron	SNP	T	C	C			2011-2349:2012-299-T	g.chr3:126581912T>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
CEP72	55722	broad.mit.edu	37	5	649188	649188	+	Intron	SNP	G	C	C	rs143444920	by1000genomes	2011-2349:2012-299-T	g.chr5:649188G>C	uc003jbf.2	+							NM_018140	NP_060610
DNAH5	1767	broad.mit.edu	37	5	13792156	13792156	+	Missense_Mutation	SNP	G	A	A			2011-2349:2012-299-T	g.chr5:13792156G>A	uc003jfd.2	-	50	8437	c.8395C>T	c.(8395-8397)CGG>TGG	p.R2799W		NM_001369	NP_001360
TRIO	7204	broad.mit.edu	37	5	14476913	14476913	+	Intron	SNP	G	A	A			2011-2349:2012-299-T	g.chr5:14476913G>A	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
CDH10	1008	broad.mit.edu	37	5	24488218	24488218	+	Missense_Mutation	SNP	C	T	T			2011-2349:2012-299-T	g.chr5:24488218C>T	uc003jgr.1	-	12	2253	c.1921G>A	c.(1921-1923)GAG>AAG	p.E641K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718
FAT2	2196	broad.mit.edu	37	5	150889805	150889805	+	Intron	SNP	A	T	T	rs6870300	by1000genomes	2011-2349:2012-299-T	g.chr5:150889805A>T	uc003lue.3	-						GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Intron	NM_001447	NP_001438
HLA-E	3133	broad.mit.edu	37	6	30460232	30460232	+	Intron	SNP	C	T	T	rs17875371		2011-2349:2012-299-T	g.chr6:30460232C>T	uc003nqg.2	+						HLA-E_uc011dmg.1_Intron|HLA-E_uc011dmh.1_Intron	NM_005516	NP_005507
PPP1R9A	55607	broad.mit.edu	37	7	94740676	94740676	+	Nonsense_Mutation	SNP	G	T	T			2011-2349:2012-299-T	g.chr7:94740676G>T	uc003unp.2	+	3	1783	c.1501G>T	c.(1501-1503)GAA>TAA	p.E501*	PPP1R9A_uc010lfj.2_Nonsense_Mutation_p.E501*|PPP1R9A_uc011kif.1_Nonsense_Mutation_p.E501*|PPP1R9A_uc003unq.2_Nonsense_Mutation_p.E501*|PPP1R9A_uc011kig.1_Nonsense_Mutation_p.E501*	NM_017650	NP_060120
MLL3	58508	broad.mit.edu	37	7	151971023	151971023	+	Intron	SNP	G	A	A			2011-2349:2012-299-T	g.chr7:151971023G>A	uc003wla.2	-							NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	157851288	157851288	+	Intron	SNP	G	A	A	rs77887111		2011-2349:2012-299-T	g.chr7:157851288G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
UBR5	51366	broad.mit.edu	37	8	103292724	103292724	+	Intron	SNP	T	G	G	rs1037698	by1000genomes	2011-2349:2012-299-T	g.chr8:103292724T>G	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
FANCG	2189	broad.mit.edu	37	9	35077203	35077203	+	Intron	SNP	G	A	A	rs17885726	by1000genomes	2011-2349:2012-299-T	g.chr9:35077203G>A	uc003zwb.1	-						FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_Intron|FANCG_uc011lot.1_Intron	NM_004629	NP_004620
CSF2RA	1438	broad.mit.edu	37	X	1386761	1386761	+	5'Flank	SNP	C	T	T			2011-2349:2012-299-T	g.chrX:1386761C>T	uc010nct.2	+						CSF2RA_uc011mhb.1_5'Flank|CSF2RA_uc004cpq.2_5'Flank|CSF2RA_uc004cpn.2_5'Flank|CSF2RA_uc004cpo.2_5'Flank|CSF2RA_uc010ncu.2_5'Flank|CSF2RA_uc011mhc.1_5'Flank|CSF2RA_uc004cpp.2_5'Flank	NM_001161529	NP_001155001
NBPF1	55672	broad.mit.edu	37	1	16907164	16907164	+	Intron	SNP	C	T	T			2011-2350:2012-298-T	g.chr1:16907164C>T	uc009vos.1	-						NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
FGFR2	2263	broad.mit.edu	37	10	123258036	123258036	+	Missense_Mutation	SNP	T	C	C			2011-2350:2012-298-T	g.chr10:123258036T>C	uc010qtk.1	-	13	2292	c.1645A>G	c.(1645-1647)AAT>GAT	p.N549D	FGFR2_uc010qtg.1_Missense_Mutation_p.N437D|FGFR2_uc010qth.1_Missense_Mutation_p.N434D|FGFR2_uc010qti.1_Missense_Mutation_p.N460D|FGFR2_uc010qtj.1_Missense_Mutation_p.N550D|FGFR2_uc010qtl.1_Missense_Mutation_p.N433D|FGFR2_uc010qtm.1_Missense_Mutation_p.N432D|FGFR2_uc001lfl.3_Missense_Mutation_p.N550D|FGFR2_uc001lfm.2_Missense_Mutation_p.N461D|FGFR2_uc001lfg.3_Missense_Mutation_p.N157D	NM_000141	NP_000132
CACNA1C	775	broad.mit.edu	37	12	2365197	2365197	+	Intron	SNP	G	T	T	rs4397911	by1000genomes	2011-2350:2012-298-T	g.chr12:2365197G>T	uc009zdu.1	+						CACNA1C_uc009zdv.1_Intron|CACNA1C_uc001qkb.2_Intron|CACNA1C_uc001qkc.2_Intron|CACNA1C_uc001qke.2_Intron|CACNA1C_uc001qkf.2_Intron|CACNA1C_uc001qjz.2_Intron|CACNA1C_uc001qkd.2_Intron|CACNA1C_uc001qkg.2_Intron|CACNA1C_uc009zdw.1_Intron|CACNA1C_uc001qkh.2_Intron|CACNA1C_uc001qkl.2_Intron|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Intron|CACNA1C_uc001qkp.2_Intron|CACNA1C_uc001qkr.2_Intron|CACNA1C_uc001qku.2_Intron|CACNA1C_uc001qkq.2_Intron|CACNA1C_uc001qks.2_Intron|CACNA1C_uc001qkt.2_Intron|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Intron|CACNA1C_uc001qkj.1_Intron|CACNA1C_uc001qkk.1_Intron|CACNA1C_uc001qkm.1_Intron	NM_199460	NP_955630
MLL2	8085	broad.mit.edu	37	12	49441821	49441821	+	Missense_Mutation	SNP	C	T	T			2011-2350:2012-298-T	g.chr12:49441821C>T	uc001rta.3	-	14	4163	c.4163G>A	c.(4162-4164)CGG>CAG	p.R1388Q		NM_003482	NP_003473
ANO4	121601	broad.mit.edu	37	12	101520891	101520891	+	Intron	SNP	A	T	T			2011-2350:2012-298-T	g.chr12:101520891A>T	uc010svm.1	+						ANO4_uc001thw.2_Intron|ANO4_uc001thx.2_Intron|ANO4_uc001thy.2_Intron	NM_178826	NP_849148
GRK1	6011	broad.mit.edu	37	13	114430984	114430984	+	Intron	SNP	G	A	A			2011-2350:2012-298-T	g.chr13:114430984G>A	uc010tkf.1	+							NM_002929	NP_002920
SYNE2	23224	broad.mit.edu	37	14	64532107	64532107	+	Intron	SNP	A	G	G	rs1255972	by1000genomes	2011-2350:2012-298-T	g.chr14:64532107A>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apw.1_Intron	NM_015180	NP_055995
MYH8	4626	broad.mit.edu	37	17	10298686	10298686	+	Missense_Mutation	SNP	C	G	G			2011-2350:2012-298-T	g.chr17:10298686C>G	uc002gmm.2	-	34	4821	c.4726G>C	c.(4726-4728)GAT>CAT	p.D1576H	uc002gml.1_Intron	NM_002472	NP_002463
RAD51C	5889	broad.mit.edu	37	17	56771096	56771096	+	Intron	SNP	C	T	T	rs17222691	by1000genomes	2011-2350:2012-298-T	g.chr17:56771096C>T	uc002iwu.2	+						TEX14_uc002iwr.1_5'Flank|TEX14_uc002iws.1_5'Flank|TEX14_uc010dcz.1_5'Flank|TEX14_uc010dda.1_5'Flank|TEX14_uc010wnz.1_5'Flank|RAD51C_uc002iwt.1_Intron|RAD51C_uc010woa.1_Intron|RAD51C_uc010ddc.2_Intron|RAD51C_uc002iwv.2_Intron|RAD51C_uc002iww.2_Intron|RAD51C_uc010wob.1_Intron	NM_058216	NP_478123
PIK3C3	5289	broad.mit.edu	37	18	39595516	39595516	+	Missense_Mutation	SNP	G	A	A			2011-2350:2012-298-T	g.chr18:39595516G>A	uc002lap.2	+	12	1460	c.1402G>A	c.(1402-1404)GGC>AGC	p.G468S	PIK3C3_uc010xcl.1_Missense_Mutation_p.G405S	NM_002647	NP_002638
PHLPP1	23239	broad.mit.edu	37	18	60612536	60612536	+	Intron	SNP	T	G	G	rs525092	by1000genomes	2011-2350:2012-298-T	g.chr18:60612536T>G	uc002lis.2	+							NM_194449	NP_919431
NFATC1	4772	broad.mit.edu	37	18	77254587	77254587	+	Intron	SNP	G	A	A			2011-2350:2012-298-T	g.chr18:77254587G>A	uc010xfg.1	+						NFATC1_uc002lnd.2_Intron|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Intron|NFATC1_uc002lng.2_Intron|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153
RMND5A	64795	broad.mit.edu	37	2	87644888	87644888	+	Intron	SNP	G	C	C			2011-2350:2012-298-T	g.chr2:87644888G>C	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179412629	179412629	+	Missense_Mutation	SNP	G	A	A			2011-2350:2012-298-T	g.chr2:179412629G>A	uc010zfg.1	-	288	86244	c.86020C>T	c.(86020-86022)CGT>TGT	p.R28674C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R22369C|TTN_uc010zfi.1_Missense_Mutation_p.R22302C|TTN_uc010zfj.1_Missense_Mutation_p.R22177C	NM_133378	NP_596869
TRPM2	7226	broad.mit.edu	37	21	45784882	45784882	+	Intron	SNP	C	T	T			2011-2350:2012-298-T	g.chr21:45784882C>T	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron	NM_003307	NP_003298
FGFR3	2261	broad.mit.edu	37	4	1808058	1808058	+	Intron	SNP	C	T	T			2011-2350:2012-298-T	g.chr4:1808058C>T	uc003gdr.3	+						FGFR3_uc003gdu.2_Intron|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Intron	NM_000142	NP_000133
REST	5978	broad.mit.edu	37	4	57775609	57775609	+	Intron	SNP	T	A	A	rs4109037	by1000genomes	2011-2350:2012-298-T	g.chr4:57775609T>A	uc003hch.2	+						REST_uc003hci.2_Intron|REST_uc003hcj.1_5'Flank|REST_uc010ihf.2_5'Flank	NM_005612	NP_005603
ADAMTS12	81792	broad.mit.edu	37	5	33891871	33891871	+	Missense_Mutation	SNP	G	T	T			2011-2350:2012-298-T	g.chr5:33891871G>T	uc003jia.1	-	1	254	c.91C>A	c.(91-93)CAG>AAG	p.Q31K	ADAMTS12_uc010iuq.1_Missense_Mutation_p.Q31K|ADAMTS12_uc003jib.1_Missense_Mutation_p.Q31K	NM_030955	NP_112217
HLA-G	3135	broad.mit.edu	37	6	29795751	29795751	+	Intron	SNP	C	T	T	rs111736586		2011-2350:2012-298-T	g.chr6:29795751C>T	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-C	3107	broad.mit.edu	37	6	31237230	31237230	+	Intron	SNP	A	G	G	rs9264596		2011-2350:2012-298-T	g.chr6:31237230A>G	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron	NM_002117	NP_002108
HLA-C	3107	broad.mit.edu	37	6	31237233	31237233	+	Intron	SNP	A	G	G	rs116398929	byFrequency;by1000genomes	2011-2350:2012-298-T	g.chr6:31237233A>G	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron	NM_002117	NP_002108
HLA-C	3107	broad.mit.edu	37	6	31237255	31237255	+	Intron	SNP	G	A	A	rs2523609		2011-2350:2012-298-T	g.chr6:31237255G>A	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron	NM_002117	NP_002108
TAP2	6891	broad.mit.edu	37	6	32806576	32806576	+	5'Flank	SNP	C	T	T	rs4148869	by1000genomes	2011-2350:2012-298-T	g.chr6:32806576C>T	uc003occ.2	-						TAP2_uc011dqf.1_5'Flank|TAP2_uc003ocb.1_5'Flank|TAP2_uc003ocd.2_5'Flank	NM_018833	NP_061313
TAP2	6891	broad.mit.edu	37	6	32806584	32806584	+	5'Flank	SNP	G	A	A	rs111265318		2011-2350:2012-298-T	g.chr6:32806584G>A	uc003occ.2	-						TAP2_uc011dqf.1_5'Flank|TAP2_uc003ocb.1_5'Flank|TAP2_uc003ocd.2_5'Flank	NM_018833	NP_061313
PIK3CG	5294	broad.mit.edu	37	7	106510076	106510076	+	Intron	SNP	A	G	G	rs1526083	byFrequency;by1000genomes	2011-2350:2012-298-T	g.chr7:106510076A>G	uc003vdv.3	+						PIK3CG_uc003vdu.2_Intron|PIK3CG_uc003vdw.2_Intron	NM_002649	NP_002640
MMP16	4325	broad.mit.edu	37	8	89198759	89198759	+	Missense_Mutation	SNP	C	T	T			2011-2350:2012-298-T	g.chr8:89198759C>T	uc003yeb.3	-	3	632	c.350G>A	c.(349-351)CGA>CAA	p.R117Q	MMP16_uc003yec.2_Missense_Mutation_p.R117Q	NM_005941	NP_005932
CSMD3	114788	broad.mit.edu	37	8	113812430	113812430	+	Missense_Mutation	SNP	C	T	T			2011-2350:2012-298-T	g.chr8:113812430C>T	uc003ynu.2	-	13	2092	c.1933G>A	c.(1933-1935)GAA>AAA	p.E645K	CSMD3_uc003ynt.2_Missense_Mutation_p.E605K|CSMD3_uc011lhx.1_Missense_Mutation_p.E541K	NM_198123	NP_937756
FANCC	2176	broad.mit.edu	37	9	98079644	98079644	+	Intron	SNP	G	A	A			2011-2350:2012-298-T	g.chr9:98079644G>A	uc004avh.2	-						FANCC_uc004avi.3_Intron|FANCC_uc010mrm.1_5'Flank|FANCC_uc011lul.1_Intron	NM_000136	NP_000127
NOTCH1	4851	broad.mit.edu	37	9	139404977	139404977	+	Intron	SNP	C	T	T	rs143369696	by1000genomes	2011-2350:2012-298-T	g.chr9:139404977C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
ASMT	438	broad.mit.edu	37	X	1743584	1743584	+	Intron	SNP	A	C	C			2011-2350:2012-298-T	g.chrX:1743584A>C	uc004cqd.2	+						ASMT_uc010ncy.2_Intron|ASMT_uc004cqe.2_Intron	NM_004043	NP_004034
CLCN4	1183	broad.mit.edu	37	X	10163169	10163169	+	Intron	SNP	A	C	C			2011-2350:2012-298-T	g.chrX:10163169A>C	uc004csy.3	+						CLCN4_uc011mid.1_Intron	NM_001830	NP_001821
FANCM	57697	broad.mit.edu	37	14	45654384	45654384	+	Intron	SNP	C	G	G			2011-2351:2012-330-T	g.chr14:45654384C>G	uc001wwd.3	+						FANCM_uc010anf.2_Intron|FANCM_uc001wwe.3_Intron|FANCM_uc010ang.2_Intron	NM_020937	NP_065988
NRXN3	9369	broad.mit.edu	37	14	80312103	80312103	+	Intron	SNP	G	C	C	rs112111957		2011-2351:2012-330-T	g.chr14:80312103G>C	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_Intron|NRXN3_uc001xuq.2_Intron|NRXN3_uc010asw.2_Intron|NRXN3_uc001xur.3_Intron	NM_004796	NP_004787
CSNK1G1	53944	broad.mit.edu	37	15	64648349	64648349	+	5'UTR	SNP	G	T	T			2011-2351:2012-330-T	g.chr15:64648349G>T	uc002anf.2	-	1					CSNK1G1_uc002anh.1_5'UTR|CSNK1G1_uc002anj.2_Intron|CSNK1G1_uc010uip.1_Intron	NM_022048	NP_071331
ABAT	18	broad.mit.edu	37	16	8866694	8866694	+	Missense_Mutation	SNP	G	A	A			2011-2351:2012-330-T	g.chr16:8866694G>A	uc002czc.3	+	12	1040	c.874G>A	c.(874-876)GTG>ATG	p.V292M	ABAT_uc002czd.3_Missense_Mutation_p.V292M|ABAT_uc010buh.2_Missense_Mutation_p.V234M|ABAT_uc010bui.2_Missense_Mutation_p.V292M	NM_020686	NP_065737
TP53	7157	broad.mit.edu	37	17	7579312	7579312	+	Silent	SNP	C	A	A	rs55863639		2011-2351:2012-330-T	g.chr17:7579312C>A	uc002gim.2	-	4	569	c.375G>T	c.(373-375)ACG>ACT	p.T125T	TP53_uc002gig.1_Silent_p.T125T|TP53_uc002gih.2_Silent_p.T125T|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Silent_p.T125T|TP53_uc010cni.1_Silent_p.T125T|TP53_uc002gij.2_Silent_p.T125T|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Silent_p.T86T|TP53_uc010cnk.1_Silent_p.T140T	NM_001126112	NP_001119584
TBCD	6904	broad.mit.edu	37	17	80806808	80806808	+	Intron	SNP	C	T	T			2011-2351:2012-330-T	g.chr17:80806808C>T	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
PIK3C3	5289	broad.mit.edu	37	18	39570683	39570683	+	Intron	SNP	A	G	G	rs11082257	by1000genomes	2011-2351:2012-330-T	g.chr18:39570683A>G	uc002lap.2	+						PIK3C3_uc010xcl.1_Intron	NM_002647	NP_002638
ZNF439	90594	broad.mit.edu	37	19	11978779	11978779	+	Missense_Mutation	SNP	C	G	G			2011-2351:2012-330-T	g.chr19:11978779C>G	uc002mss.2	+	3	1023	c.895C>G	c.(895-897)CAA>GAA	p.Q299E	ZNF439_uc002msr.2_Missense_Mutation_p.Q163E	NM_152262	NP_689475
NOTCH3	4854	broad.mit.edu	37	19	15302821	15302821	+	Missense_Mutation	SNP	C	G	G			2011-2351:2012-330-T	g.chr19:15302821C>G	uc002nan.2	-	4	705	c.629G>C	c.(628-630)GGC>GCC	p.G210A	NOTCH3_uc002nao.1_Missense_Mutation_p.G210A	NM_000435	NP_000426
C2orf65	130951	broad.mit.edu	37	2	74788278	74788278	+	Intron	SNP	G	A	A			2011-2351:2012-330-T	g.chr2:74788278G>A	uc002smy.2	-						C2orf65_uc010ysa.1_Intron|C2orf65_uc010ffp.2_Intron|C2orf65_uc002smx.2_Intron	NM_138804	NP_620159
C2orf65	130951	broad.mit.edu	37	2	74788281	74788281	+	Intron	SNP	A	G	G			2011-2351:2012-330-T	g.chr2:74788281A>G	uc002smy.2	-						C2orf65_uc010ysa.1_Intron|C2orf65_uc010ffp.2_Intron|C2orf65_uc002smx.2_Intron	NM_138804	NP_620159
TTN	7273	broad.mit.edu	37	2	179434525	179434525	+	Missense_Mutation	SNP	C	T	T			2011-2351:2012-330-T	g.chr2:179434525C>T	uc010zfg.1	-	275	68854	c.68630G>A	c.(68629-68631)TGT>TAT	p.C22877Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.C16572Y|TTN_uc010zfi.1_Missense_Mutation_p.C16505Y|TTN_uc010zfj.1_Missense_Mutation_p.C16380Y	NM_133378	NP_596869
GPR35	2859	broad.mit.edu	37	2	241562860	241562860	+	Intron	SNP	C	T	T	rs34876312	by1000genomes	2011-2351:2012-330-T	g.chr2:241562860C>T	uc010fzh.1	+						GPR35_uc010fzi.1_Intron	NM_005301	NP_005292
EP300	2033	broad.mit.edu	37	22	41565575	41565575	+	Missense_Mutation	SNP	A	G	G			2011-2351:2012-330-T	g.chr22:41565575A>G	uc003azl.3	+	26	4636	c.4241A>G	c.(4240-4242)TAT>TGT	p.Y1414C		NM_001429	NP_001420
CNTN6	27255	broad.mit.edu	37	3	1443057	1443057	+	Intron	SNP	A	T	T			2011-2351:2012-330-T	g.chr3:1443057A>T	uc003boz.2	+						CNTN6_uc011asj.1_Intron|CNTN6_uc003bpa.2_Intron	NM_014461	NP_055276
BBX	56987	broad.mit.edu	37	3	107396287	107396287	+	Intron	SNP	T	G	G	rs13326227	by1000genomes	2011-2351:2012-330-T	g.chr3:107396287T>G	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Intron|BBX_uc003dwm.3_Intron	NM_001142568	NP_001136040
CHCHD6	84303	broad.mit.edu	37	3	126582636	126582636	+	Intron	SNP	C	A	A			2011-2351:2012-330-T	g.chr3:126582636C>A	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
ZIC4	84107	broad.mit.edu	37	3	147113553	147113553	+	Intron	SNP	C	A	A			2011-2351:2012-330-T	g.chr3:147113553C>A	uc003ewd.1	-						ZIC4_uc003ewc.1_Intron|ZIC4_uc011bno.1_Intron	NM_032153	NP_115529
MUC4	4585	broad.mit.edu	37	3	195503562	195503562	+	Intron	SNP	C	A	A			2011-2351:2012-330-T	g.chr3:195503562C>A	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
WHSC1	7468	broad.mit.edu	37	4	1943965	1943965	+	Intron	SNP	A	G	G			2011-2351:2012-330-T	g.chr4:1943965A>G	uc003gdz.3	+						WHSC1_uc003geb.3_Intron|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_Intron|WHSC1_uc003gef.3_Intron|WHSC1_uc003gei.3_Intron|WHSC1_uc003gdy.1_3'UTR|WHSC1_uc010icd.1_Intron|WHSC1_uc003gea.1_3'UTR|WHSC1_uc010ice.1_Intron|WHSC1_uc003geh.1_Intron	NM_001042424	NP_001035889
WHSC1	7468	broad.mit.edu	37	4	1961137	1961137	+	Intron	SNP	G	A	A	rs474235	by1000genomes	2011-2351:2012-330-T	g.chr4:1961137G>A	uc003gdz.3	+						WHSC1_uc003geb.3_Intron|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_Intron|WHSC1_uc003gef.3_Intron|WHSC1_uc003gei.3_Intron|WHSC1_uc011bvh.1_Intron|WHSC1_uc010icf.2_Intron	NM_001042424	NP_001035889
PTPRN2	5799	broad.mit.edu	37	7	157852413	157852413	+	Intron	SNP	C	A	A	rs56162951		2011-2351:2012-330-T	g.chr7:157852413C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1788069	1788069	+	Intron	SNP	C	T	T	rs143383795	by1000genomes	2011-2351:2012-330-T	g.chr8:1788069C>T	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
CDKN2A	1029	broad.mit.edu	37	9	21974748	21974748	+	Nonsense_Mutation	SNP	C	A	A			2011-2351:2012-330-T	g.chr9:21974748C>A	uc003zpk.2	-	1	291	c.79G>T	c.(79-81)GAG>TAG	p.E27*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Nonsense_Mutation_p.E27*|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068
NOTCH1	4851	broad.mit.edu	37	9	139417629	139417629	+	Missense_Mutation	SNP	G	T	T			2011-2351:2012-330-T	g.chr9:139417629G>T	uc004chz.2	-	4	415	c.415C>A	c.(415-417)CAG>AAG	p.Q139K		NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139417631	139417631	+	Missense_Mutation	SNP	C	T	T			2011-2351:2012-330-T	g.chr9:139417631C>T	uc004chz.2	-	4	413	c.413G>A	c.(412-414)TGC>TAC	p.C138Y		NM_017617	NP_060087
CACNA1B	774	broad.mit.edu	37	9	140783493	140783493	+	Intron	SNP	C	T	T			2011-2351:2012-330-T	g.chr9:140783493C>T	uc004cog.2	+						uc004cof.1_Intron	NM_000718	NP_000709
NOTCH2	4853	broad.mit.edu	37	1	120510068	120510068	+	Missense_Mutation	SNP	G	C	C			2011-2352:2012-297-T	g.chr1:120510068G>C	uc001eik.2	-	8	1697	c.1441C>G	c.(1441-1443)CTG>GTG	p.L481V	NOTCH2_uc001eil.2_Missense_Mutation_p.L481V|NOTCH2_uc001eim.3_Missense_Mutation_p.L398V	NM_024408	NP_077719
USH2A	7399	broad.mit.edu	37	1	216073513	216073513	+	Missense_Mutation	SNP	G	A	A			2011-2352:2012-297-T	g.chr1:216073513G>A	uc001hku.1	-	40	7885	c.7498C>T	c.(7498-7500)CTC>TTC	p.L2500F		NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216219736	216219736	+	Intron	SNP	G	A	A			2011-2352:2012-297-T	g.chr1:216219736G>A	uc001hku.1	-							NM_206933	NP_996816
CUBN	8029	broad.mit.edu	37	10	16893378	16893378	+	Silent	SNP	A	G	G			2011-2352:2012-297-T	g.chr10:16893378A>G	uc001ioo.2	-	60	9571	c.9519T>C	c.(9517-9519)TCT>TCC	p.S3173S	CUBN_uc009xjq.1_RNA	NM_001081	NP_001072
CUBN	8029	broad.mit.edu	37	10	17024404	17024404	+	Intron	SNP	C	T	T	rs3012484	by1000genomes	2011-2352:2012-297-T	g.chr10:17024404C>T	uc001ioo.2	-							NM_001081	NP_001072
CUBN	8029	broad.mit.edu	37	10	17172221	17172221	+	5'Flank	SNP	T	A	A	rs75701468	by1000genomes	2011-2352:2012-297-T	g.chr10:17172221T>A	uc001ioo.2	-							NM_001081	NP_001072
MAP3K8	1326	broad.mit.edu	37	10	30728250	30728250	+	Intron	SNP	A	G	G	rs2907	by1000genomes	2011-2352:2012-297-T	g.chr10:30728250A>G	uc001ivi.1	+						MAP3K8_uc009xlf.1_Intron|MAP3K8_uc001ivj.1_Intron	NM_005204	NP_005195
CTNNA3	29119	broad.mit.edu	37	10	68685929	68685929	+	Intron	SNP	G	C	C	rs7902006	by1000genomes	2011-2352:2012-297-T	g.chr10:68685929G>C	uc009xpn.1	-						CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Nonsense_Mutation_p.Y223*|LRRTM3_uc001jmz.1_5'UTR|LRRTM3_uc001jmy.2_5'UTR	NM_001127384	NP_001120856
NRAP	4892	broad.mit.edu	37	10	115401264	115401264	+	Intron	SNP	A	G	G	rs3121465	by1000genomes	2011-2352:2012-297-T	g.chr10:115401264A>G	uc001laj.2	-						NRAP_uc001lak.2_Intron|NRAP_uc001lal.3_Intron	NM_198060	NP_932326
ADAM12	8038	broad.mit.edu	37	10	127727768	127727768	+	Intron	SNP	A	G	G	rs1278255	by1000genomes	2011-2352:2012-297-T	g.chr10:127727768A>G	uc001ljk.2	-						ADAM12_uc010qul.1_Intron	NM_003474	NP_003465
LSP1	4046	broad.mit.edu	37	11	1895297	1895297	+	Intron	SNP	C	T	T			2011-2352:2012-297-T	g.chr11:1895297C>T	uc001lui.2	+						LSP1_uc001luj.2_Intron|LSP1_uc001luk.2_Intron|LSP1_uc001lul.2_Intron|LSP1_uc001lum.2_Intron	NM_002339	NP_002330
TPCN2	219931	broad.mit.edu	37	11	68844043	68844043	+	Intron	SNP	G	C	C	rs61881027	by1000genomes	2011-2352:2012-297-T	g.chr11:68844043G>C	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_Intron	NM_139075	NP_620714
LRRK2	120892	broad.mit.edu	37	12	40709185	40709185	+	Intron	SNP	A	G	G	rs721713	by1000genomes	2011-2352:2012-297-T	g.chr12:40709185A>G	uc001rmg.3	+						LRRK2_uc009zjw.2_Intron|LRRK2_uc001rmi.2_Intron	NM_198578	NP_940980
LRRK2	120892	broad.mit.edu	37	12	40713776	40713776	+	Intron	SNP	C	T	T			2011-2352:2012-297-T	g.chr12:40713776C>T	uc001rmg.3	+						LRRK2_uc009zjw.2_Intron|LRRK2_uc001rmi.2_Intron	NM_198578	NP_940980
FLT3	2322	broad.mit.edu	37	13	28607916	28607916	+	Intron	SNP	T	A	A	rs2491222	by1000genomes	2011-2352:2012-297-T	g.chr13:28607916T>A	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
LMF1	64788	broad.mit.edu	37	16	908718	908718	+	Intron	SNP	G	A	A			2011-2352:2012-297-T	g.chr16:908718G>A	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
PRKCB	5579	broad.mit.edu	37	16	24135112	24135112	+	Intron	SNP	T	C	C	rs1013316	by1000genomes	2011-2352:2012-297-T	g.chr16:24135112T>C	uc002dmd.2	+						PRKCB_uc002dme.2_Intron	NM_212535	NP_997700
CYLD	1540	broad.mit.edu	37	16	50785575	50785575	+	Missense_Mutation	SNP	T	C	C			2011-2352:2012-297-T	g.chr16:50785575T>C	uc002egp.1	+	5	980	c.565T>C	c.(565-567)TGT>CGT	p.C189R	CYLD_uc002egn.1_Missense_Mutation_p.C189R|CYLD_uc002ego.2_Missense_Mutation_p.C189R|CYLD_uc010cbs.1_Missense_Mutation_p.C189R|CYLD_uc002egq.1_Missense_Mutation_p.C189R|CYLD_uc002egr.1_Missense_Mutation_p.C189R|CYLD_uc002egs.1_Missense_Mutation_p.C189R	NM_015247	NP_056062
ZNF778	197320	broad.mit.edu	37	16	89299442	89299442	+	RNA	SNP	G	A	A	rs62068540	by1000genomes	2011-2352:2012-297-T	g.chr16:89299442G>A	uc010vpf.1	+	6		c.990G>A			uc010vph.1_5'Flank		
CPNE7	27132	broad.mit.edu	37	16	89646811	89646811	+	Intron	SNP	G	A	A	rs193270	by1000genomes	2011-2352:2012-297-T	g.chr16:89646811G>A	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
TP53	7157	broad.mit.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	A	A	rs121912651		2011-2352:2012-297-T	g.chr17:7577539G>A	uc002gim.2	-	7	936	c.742C>T	c.(742-744)CGG>TGG	p.R248W	TP53_uc002gig.1_Missense_Mutation_p.R248W|TP53_uc002gih.2_Missense_Mutation_p.R248W|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116W|TP53_uc010cng.1_Missense_Mutation_p.R116W|TP53_uc002gii.1_Missense_Mutation_p.R116W|TP53_uc010cnh.1_Missense_Mutation_p.R248W|TP53_uc010cni.1_Missense_Mutation_p.R248W|TP53_uc002gij.2_Missense_Mutation_p.R248W|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155W|TP53_uc002gio.2_Missense_Mutation_p.R116W	NM_001126112	NP_001119584
MYH8	4626	broad.mit.edu	37	17	10307841	10307841	+	Missense_Mutation	SNP	A	C	C			2011-2352:2012-297-T	g.chr17:10307841A>C	uc002gmm.2	-	22	2589	c.2494T>G	c.(2494-2496)TGG>GGG	p.W832G	uc002gml.1_Intron	NM_002472	NP_002463
ANKFN1	162282	broad.mit.edu	37	17	54445406	54445406	+	Intron	SNP	T	G	G			2011-2352:2012-297-T	g.chr17:54445406T>G	uc002iun.1	+							NM_153228	NP_694960
ABCA6	23460	broad.mit.edu	37	17	67109894	67109894	+	Intron	SNP	C	T	T	rs9282552	byFrequency;by1000genomes	2011-2352:2012-297-T	g.chr17:67109894C>T	uc002jhw.1	-						ABCA6_uc002jhx.1_Intron	NM_080284	NP_525023
ABCA6	23460	broad.mit.edu	37	17	67138138	67138138	+	5'Flank	SNP	C	T	T	rs3744489	by1000genomes	2011-2352:2012-297-T	g.chr17:67138138C>T	uc002jhw.1	-						ABCA6_uc002jhy.2_5'Flank	NM_080284	NP_525023
RPTOR	57521	broad.mit.edu	37	17	78718701	78718701	+	Intron	SNP	T	C	C	rs140202188	by1000genomes	2011-2352:2012-297-T	g.chr17:78718701T>C	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
DCC	1630	broad.mit.edu	37	18	50936780	50936780	+	Intron	SNP	G	A	A	rs10853631	by1000genomes	2011-2352:2012-297-T	g.chr18:50936780G>A	uc002lfe.1	+						DCC_uc010xdr.1_Intron|DCC_uc010dpf.1_Intron	NM_005215	NP_005206
KIAA1468	57614	broad.mit.edu	37	18	59894764	59894764	+	Intron	SNP	T	C	C	rs17717783	by1000genomes	2011-2352:2012-297-T	g.chr18:59894764T>C	uc002lil.2	+						KIAA1468_uc002lik.1_Intron|KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
ZNF823	55552	broad.mit.edu	37	19	11833402	11833402	+	Missense_Mutation	SNP	T	C	C			2011-2352:2012-297-T	g.chr19:11833402T>C	uc002msm.2	-	4	1073	c.947A>G	c.(946-948)CAC>CGC	p.H316R	ZNF823_uc010xmd.1_Missense_Mutation_p.H134R|ZNF823_uc010dyi.1_Missense_Mutation_p.H272R	NM_001080493	NP_001073962
ZNF610	162963	broad.mit.edu	37	19	52870052	52870052	+	3'UTR	SNP	C	G	G	rs1054612	by1000genomes	2011-2352:2012-297-T	g.chr19:52870052C>G	uc002pyx.3	+	6					ZNF610_uc002pyy.3_3'UTR|ZNF610_uc002pyz.3_3'UTR|ZNF610_uc002pza.2_3'UTR	NM_001161426	NP_001154898
NLRP4	147945	broad.mit.edu	37	19	56369507	56369507	+	Missense_Mutation	SNP	G	A	A	rs142248221	byFrequency	2011-2352:2012-297-T	g.chr19:56369507G>A	uc002qmd.3	+	3	1170	c.748G>A	c.(748-750)GAC>AAC	p.D250N	NLRP4_uc002qmf.2_Missense_Mutation_p.D175N|NLRP4_uc010etf.2_Missense_Mutation_p.D81N	NM_134444	NP_604393
APOB	338	broad.mit.edu	37	2	21232950	21232950	+	Missense_Mutation	SNP	C	T	T			2011-2352:2012-297-T	g.chr2:21232950C>T	uc002red.2	-	26	6918	c.6790G>A	c.(6790-6792)GAA>AAA	p.E2264K		NM_000384	NP_000375
APOB	338	broad.mit.edu	37	2	21251410	21251410	+	Missense_Mutation	SNP	C	G	G			2011-2352:2012-297-T	g.chr2:21251410C>G	uc002red.2	-	13	1746	c.1618G>C	c.(1618-1620)GAC>CAC	p.D540H		NM_000384	NP_000375
REL	5966	broad.mit.edu	37	2	61118987	61118987	+	Intron	SNP	C	A	A			2011-2352:2012-297-T	g.chr2:61118987C>A	uc002sam.1	+						REL_uc002san.1_Intron	NM_002908	NP_002899
STAT1	6772	broad.mit.edu	37	2	191874777	191874777	+	Intron	SNP	T	C	C			2011-2352:2012-297-T	g.chr2:191874777T>C	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron|STAT1_uc010fsf.1_Intron	NM_007315	NP_009330
ABCA12	26154	broad.mit.edu	37	2	215812297	215812297	+	Intron	SNP	G	A	A	rs2274412	by1000genomes	2011-2352:2012-297-T	g.chr2:215812297G>A	uc002vew.2	-						ABCA12_uc002vev.2_Intron|ABCA12_uc010zjn.1_Intron	NM_173076	NP_775099
ABCA12	26154	broad.mit.edu	37	2	215910786	215910786	+	Intron	SNP	T	C	C	rs10179876	by1000genomes	2011-2352:2012-297-T	g.chr2:215910786T>C	uc002vew.2	-						ABCA12_uc010zjn.1_Intron	NM_173076	NP_775099
CUL3	8452	broad.mit.edu	37	2	225422561	225422561	+	Missense_Mutation	SNP	C	T	T			2011-2352:2012-297-T	g.chr2:225422561C>T	uc002vny.2	-	2	463	c.79G>A	c.(79-81)GAA>AAA	p.E27K	CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Missense_Mutation_p.E33K	NM_003590	NP_003581
COL6A3	1293	broad.mit.edu	37	2	238277603	238277603	+	Silent	SNP	G	A	A	rs115551245	by1000genomes	2011-2352:2012-297-T	g.chr2:238277603G>A	uc002vwl.2	-	10	4788	c.4503C>T	c.(4501-4503)GAC>GAT	p.D1501D	COL6A3_uc002vwo.2_Silent_p.D1295D|COL6A3_uc010znj.1_Silent_p.D894D	NM_004369	NP_004360
TMPRSS2	7113	broad.mit.edu	37	21	42843962	42843962	+	Intron	SNP	T	A	A	rs458213	by1000genomes	2011-2352:2012-297-T	g.chr21:42843962T>A	uc002yzj.2	-						TMPRSS2_uc010gor.2_Intron|TMPRSS2_uc010gos.1_Intron	NM_005656	NP_005647
RIPK4	54101	broad.mit.edu	37	21	43161350	43161350	+	Nonsense_Mutation	SNP	G	C	C			2011-2352:2012-297-T	g.chr21:43161350G>C	uc002yzn.1	-	8	2051	c.2003C>G	c.(2002-2004)TCA>TGA	p.S668*		NM_020639	NP_065690
RAC2	5880	broad.mit.edu	37	22	37623043	37623043	+	Intron	SNP	A	C	C			2011-2352:2012-297-T	g.chr22:37623043A>C	uc003arc.2	-							NM_002872	NP_002863
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45182207	45182207	+	Intron	SNP	G	A	A	rs739176	by1000genomes	2011-2352:2012-297-T	g.chr22:45182207G>A	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_5'Flank|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
GNL3	26354	broad.mit.edu	37	3	52720080	52720080	+	5'UTR	SNP	A	C	C	rs1108842	by1000genomes	2011-2352:2012-297-T	g.chr3:52720080A>C	uc003dfd.2	+	1					PBRM1_uc003dey.2_5'Flank|GNL3_uc011beh.1_RNA|GNL3_uc003dfe.2_5'UTR|GNL3_uc003dff.2_Intron	NM_014366	NP_055181
BBX	56987	broad.mit.edu	37	3	107463396	107463396	+	Intron	SNP	G	A	A			2011-2352:2012-297-T	g.chr3:107463396G>A	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Intron|BBX_uc003dwm.3_Intron	NM_001142568	NP_001136040
PIK3CA	5290	broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G	rs121913279		2011-2352:2012-297-T	g.chr3:178952085A>G	uc003fjk.2	+	21	3297	c.3140A>G	c.(3139-3141)CAT>CGT	p.H1047R		NM_006218	NP_006209
PCGF3	10336	broad.mit.edu	37	4	701651	701651	+	Intron	SNP	C	T	T			2011-2352:2012-297-T	g.chr4:701651C>T	uc011bva.1	+						PCGF3_uc003gbc.1_Intron|PCGF3_uc003gbd.1_Intron|PCGF3_uc003gbe.2_Intron|PCGF3_uc010ibh.2_Intron	NM_006315	NP_006306
DNAH5	1767	broad.mit.edu	37	5	13752379	13752379	+	Missense_Mutation	SNP	T	A	A			2011-2352:2012-297-T	g.chr5:13752379T>A	uc003jfd.2	-	64	10934	c.10892A>T	c.(10891-10893)AAG>ATG	p.K3631M	DNAH5_uc003jfc.2_Translation_Start_Site	NM_001369	NP_001360
PIK3R1	5295	broad.mit.edu	37	5	67575940	67575940	+	Intron	SNP	G	A	A			2011-2352:2012-297-T	g.chr5:67575940G>A	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron	NM_181523	NP_852664
MEF2C	4208	broad.mit.edu	37	5	88179575	88179575	+	5'Flank	SNP	A	G	G	rs80043958	byFrequency;by1000genomes	2011-2352:2012-297-T	g.chr5:88179575A>G	uc003kjj.2	-						MEF2C_uc003kjk.2_5'Flank|MEF2C_uc003kjm.2_Intron|MEF2C_uc003kjl.2_Intron	NM_002397	NP_002388
GPR115	221393	broad.mit.edu	37	6	47678678	47678678	+	Intron	SNP	C	G	G	rs944056	by1000genomes	2011-2352:2012-297-T	g.chr6:47678678C>G	uc003oza.1	+						GPR115_uc003oyz.1_Intron|GPR115_uc003ozb.1_Intron	NM_153838	NP_722580
GPR115	221393	broad.mit.edu	37	6	47681494	47681494	+	Intron	SNP	T	C	C	rs6916562	by1000genomes	2011-2352:2012-297-T	g.chr6:47681494T>C	uc003oza.1	+						GPR115_uc003oyz.1_Intron|GPR115_uc003ozb.1_Intron	NM_153838	NP_722580
DST	667	broad.mit.edu	37	6	56437465	56437465	+	Intron	SNP	T	C	C	rs1014309	by1000genomes	2011-2352:2012-297-T	g.chr6:56437465T>C	uc003pdf.2	-						DST_uc003pcz.3_Intron|DST_uc011dxj.1_Intron|DST_uc011dxk.1_Intron|DST_uc003pcy.3_Intron|DST_uc010kaa.1_Intron	NM_001144769	NP_001138241
PHIP	55023	broad.mit.edu	37	6	79752792	79752792	+	Intron	SNP	T	C	C	rs9343863	by1000genomes	2011-2352:2012-297-T	g.chr6:79752792T>C	uc003pir.2	-						PHIP_uc011dyp.1_Intron	NM_017934	NP_060404
HBS1L	10767	broad.mit.edu	37	6	135375991	135375991	+	5'UTR	SNP	G	A	A	rs2297339	by1000genomes	2011-2352:2012-297-T	g.chr6:135375991G>A	uc003qez.2	-	1					HBS1L_uc011eda.1_5'UTR|HBS1L_uc003qfa.2_5'UTR	NM_006620	NP_006611
HBS1L	10767	broad.mit.edu	37	6	135376058	135376058	+	5'Flank	SNP	T	C	C	rs2297340	by1000genomes	2011-2352:2012-297-T	g.chr6:135376058T>C	uc003qez.2	-						HBS1L_uc011eda.1_5'Flank|HBS1L_uc003qfa.2_5'Flank	NM_006620	NP_006611
SYNE1	23345	broad.mit.edu	37	6	152466422	152466422	+	Intron	SNP	C	T	T	rs2813485	by1000genomes	2011-2352:2012-297-T	g.chr6:152466422C>T	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152784373	152784373	+	Intron	SNP	T	C	C			2011-2352:2012-297-T	g.chr6:152784373T>C	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169019242	169019242	+	Intron	SNP	G	A	A	rs11969696	by1000genomes	2011-2352:2012-297-T	g.chr6:169019242G>A	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_Intron	NM_022138	NP_071421
SDK1	221935	broad.mit.edu	37	7	4257148	4257148	+	Intron	SNP	C	A	A			2011-2352:2012-297-T	g.chr7:4257148C>A	uc003smx.2	+						SDK1_uc010kso.2_Intron|SDK1_uc003smy.2_Intron	NM_152744	NP_689957
ADCY1	107	broad.mit.edu	37	7	45688282	45688282	+	Missense_Mutation	SNP	G	A	A			2011-2352:2012-297-T	g.chr7:45688282G>A	uc003tne.3	+	5	1052	c.1034G>A	c.(1033-1035)CGC>CAC	p.R345H	ADCY1_uc003tnd.2_Missense_Mutation_p.R120H	NM_021116	NP_066939
PKD1L1	168507	broad.mit.edu	37	7	47915890	47915890	+	Intron	SNP	C	T	T	rs4724656	by1000genomes	2011-2352:2012-297-T	g.chr7:47915890C>T	uc003tny.1	-							NM_138295	NP_612152
WBSCR17	64409	broad.mit.edu	37	7	71036257	71036257	+	Intron	SNP	C	G	G			2011-2352:2012-297-T	g.chr7:71036257C>G	uc003tvy.2	+						WBSCR17_uc003tvz.2_Intron	NM_022479	NP_071924
PCLO	27445	broad.mit.edu	37	7	82585375	82585375	+	Missense_Mutation	SNP	C	T	T			2011-2352:2012-297-T	g.chr7:82585375C>T	uc003uhx.2	-	5	5183	c.4894G>A	c.(4894-4896)GAA>AAA	p.E1632K	PCLO_uc003uhv.2_Missense_Mutation_p.E1632K	NM_033026	NP_149015
MLL3	58508	broad.mit.edu	37	7	151859602	151859602	+	Missense_Mutation	SNP	C	T	T			2011-2352:2012-297-T	g.chr7:151859602C>T	uc003wla.2	-	43	11279	c.11060G>A	c.(11059-11061)AGT>AAT	p.S3687N	MLL3_uc003wkz.2_Missense_Mutation_p.S2748N|MLL3_uc003wky.2_Missense_Mutation_p.S1196N	NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	157851205	157851205	+	Intron	SNP	G	C	C			2011-2352:2012-297-T	g.chr7:157851205G>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157851273	157851273	+	Intron	SNP	C	T	T			2011-2352:2012-297-T	g.chr7:157851273C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157851307	157851307	+	Intron	SNP	C	A	A			2011-2352:2012-297-T	g.chr7:157851307C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PKHD1L1	93035	broad.mit.edu	37	8	110457656	110457656	+	Missense_Mutation	SNP	G	T	T			2011-2352:2012-297-T	g.chr8:110457656G>T	uc003yne.2	+	38	5662	c.5558G>T	c.(5557-5559)GGA>GTA	p.G1853V		NM_177531	NP_803875
ENPP2	5168	broad.mit.edu	37	8	120651589	120651589	+	5'Flank	SNP	C	G	G			2011-2352:2012-297-T	g.chr8:120651589C>G	uc003yot.1	-						ENPP2_uc003yos.1_5'Flank|ENPP2_uc010mdd.1_5'Flank	NM_001040092	NP_001035181
NFIB	4781	broad.mit.edu	37	9	14306884	14306884	+	Intron	SNP	T	C	C	rs10961471	by1000genomes	2011-2352:2012-297-T	g.chr9:14306884T>C	uc003zle.2	-						NFIB_uc003zlf.2_Intron|NFIB_uc011lmo.1_Intron	NM_005596	NP_005587
NFIB	4781	broad.mit.edu	37	9	14313712	14313712	+	5'UTR	SNP	T	G	G	rs2273933	by1000genomes	2011-2352:2012-297-T	g.chr9:14313712T>G	uc003zle.2	-	1					NFIB_uc003zlf.2_5'UTR|NFIB_uc011lmo.1_5'UTR	NM_005596	NP_005587
HDX	139324	broad.mit.edu	37	X	83599408	83599408	+	Missense_Mutation	SNP	G	C	C			2011-2352:2012-297-T	g.chrX:83599408G>C	uc004eek.1	-	6	1619	c.1510C>G	c.(1510-1512)CCA>GCA	p.P504A	HDX_uc011mqv.1_Missense_Mutation_p.P504A|HDX_uc004eel.1_Missense_Mutation_p.P446A	NM_144657	NP_653258
MRE11A	4361	broad.mit.edu	37	11	94208583	94208583	+	Intron	SNP	C	T	T	rs114584241	by1000genomes	2011-2353:2012-296-T	g.chr11:94208583C>T	uc001peu.2	-						MRE11A_uc001pev.2_Intron|MRE11A_uc009ywj.2_Intron	NM_005591	NP_005582
TSPAN9	10867	broad.mit.edu	37	12	3377532	3377532	+	Intron	SNP	C	G	G			2011-2353:2012-296-T	g.chr12:3377532C>G	uc001qlp.2	+							NM_006675	NP_006666
PIK3C2G	5288	broad.mit.edu	37	12	18641519	18641519	+	Missense_Mutation	SNP	G	A	A			2011-2353:2012-296-T	g.chr12:18641519G>A	uc001rdt.2	+	18	2634	c.2518G>A	c.(2518-2520)GAT>AAT	p.D840N	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.D881N|PIK3C2G_uc010sic.1_Missense_Mutation_p.D659N	NM_004570	NP_004561
LMF1	64788	broad.mit.edu	37	16	1000081	1000081	+	Intron	SNP	A	C	C			2011-2353:2012-296-T	g.chr16:1000081A>C	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
CYLD	1540	broad.mit.edu	37	16	50820905	50820905	+	Intron	SNP	C	T	T			2011-2353:2012-296-T	g.chr16:50820905C>T	uc002egp.1	+						CYLD_uc010cbs.1_Intron|CYLD_uc002egq.1_Intron|CYLD_uc002egr.1_Intron|CYLD_uc002egs.1_Missense_Mutation_p.H694Y	NM_015247	NP_056062
TP53	7157	broad.mit.edu	37	17	7577498	7577498	+	Splice_Site	SNP	C	A	A			2011-2353:2012-296-T	g.chr17:7577498C>A	uc002gim.2	-	7	976	c.782_splice	c.e7+1	p.S261_splice	TP53_uc002gig.1_Splice_Site_p.R261_splice|TP53_uc002gih.2_Splice_Site_p.S261_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Splice_Site_p.S129_splice|TP53_uc010cng.1_Splice_Site_p.S129_splice|TP53_uc002gii.1_Splice_Site_p.S129_splice|TP53_uc010cnh.1_Splice_Site_p.S261_splice|TP53_uc010cni.1_Splice_Site_p.S261_splice|TP53_uc002gij.2_Splice_Site_p.S261_splice	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7578645	7578645	+	Intron	SNP	C	T	T	rs2909430	byFrequency;by1000genomes	2011-2353:2012-296-T	g.chr17:7578645C>T	uc002gim.2	-						TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'UTR|TP53_uc010cng.1_5'UTR|TP53_uc002gii.1_5'UTR|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gij.2_Intron|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Intron	NM_001126112	NP_001119584
MYH13	8735	broad.mit.edu	37	17	10247225	10247225	+	Missense_Mutation	SNP	G	T	T			2011-2353:2012-296-T	g.chr17:10247225G>T	uc002gmk.1	-	16	1876	c.1786C>A	c.(1786-1788)CTG>ATG	p.L596M	MYH13_uc010vvf.1_Missense_Mutation_p.L271M	NM_003802	NP_003793
MYH1	4619	broad.mit.edu	37	17	10403949	10403949	+	Missense_Mutation	SNP	C	G	G			2011-2353:2012-296-T	g.chr17:10403949C>G	uc002gmo.2	-	28	3953	c.3859G>C	c.(3859-3861)GAA>CAA	p.E1287Q	uc002gml.1_Intron	NM_005963	NP_005954
RPTOR	57521	broad.mit.edu	37	17	78718285	78718285	+	Intron	SNP	A	T	T			2011-2353:2012-296-T	g.chr17:78718285A>T	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
ZNF521	25925	broad.mit.edu	37	18	22805977	22805977	+	Missense_Mutation	SNP	G	C	C			2011-2353:2012-296-T	g.chr18:22805977G>C	uc002kvk.2	-	4	2152	c.1905C>G	c.(1903-1905)ATC>ATG	p.I635M	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.I635M|ZNF521_uc002kvl.2_Missense_Mutation_p.I415M	NM_015461	NP_056276
MBP	4155	broad.mit.edu	37	18	74749252	74749252	+	Intron	SNP	G	A	A	rs116665438	by1000genomes	2011-2353:2012-296-T	g.chr18:74749252G>A	uc010xfd.1	-						MBP_uc002lmr.2_Intron	NM_001025101	NP_001020272
FANCL	55120	broad.mit.edu	37	2	58457016	58457016	+	Intron	SNP	T	C	C			2011-2353:2012-296-T	g.chr2:58457016T>C	uc002rzw.3	-						FANCL_uc002rzx.3_Intron|FANCL_uc010fce.2_Intron|FANCL_uc010fcf.1_Intron	NM_018062	NP_060532
CTNNA2	1496	broad.mit.edu	37	2	80531878	80531878	+	Intron	SNP	G	C	C			2011-2353:2012-296-T	g.chr2:80531878G>C	uc010ysh.1	+						CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_5'Flank|LRRTM1_uc002sok.1_5'Flank	NM_004389	NP_004380
SULT4A1	25830	broad.mit.edu	37	22	44230330	44230330	+	Intron	SNP	C	T	T			2011-2353:2012-296-T	g.chr22:44230330C>T	uc003bee.1	-						SULT4A1_uc003bed.1_Intron|SULT4A1_uc003bef.1_Intron|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166
PLXNA1	5361	broad.mit.edu	37	3	126751306	126751306	+	Missense_Mutation	SNP	G	A	A			2011-2353:2012-296-T	g.chr3:126751306G>A	uc003ejg.2	+	29	5243	c.5239G>A	c.(5239-5241)GAC>AAC	p.D1747N	PLXNA1_uc003ejh.2_Missense_Mutation_p.D415N	NM_032242	NP_115618
PIK3CB	5291	broad.mit.edu	37	3	138376705	138376705	+	Intron	SNP	T	C	C			2011-2353:2012-296-T	g.chr3:138376705T>C	uc011bmq.1	-						PIK3CB_uc011bmn.1_Intron|PIK3CB_uc011bmo.1_Intron|PIK3CB_uc011bmp.1_Intron|PIK3CB_uc003est.1_5'Flank	NM_006219	NP_006210
PIK3CB	5291	broad.mit.edu	37	3	138417989	138417989	+	Intron	SNP	G	A	A	rs361080	by1000genomes	2011-2353:2012-296-T	g.chr3:138417989G>A	uc011bmq.1	-						PIK3CB_uc011bmn.1_Intron|PIK3CB_uc011bmo.1_Intron|PIK3CB_uc011bmp.1_Intron	NM_006219	NP_006210
PIK3CA	5290	broad.mit.edu	37	3	178922274	178922274	+	Intron	SNP	C	A	A	rs2699896	by1000genomes	2011-2353:2012-296-T	g.chr3:178922274C>A	uc003fjk.2	+							NM_006218	NP_006209
PIK3CA	5290	broad.mit.edu	37	3	178942431	178942431	+	Intron	SNP	C	G	G	rs2699889	by1000genomes	2011-2353:2012-296-T	g.chr3:178942431C>G	uc003fjk.2	+							NM_006218	NP_006209
ANKRD17	26057	broad.mit.edu	37	4	73962998	73962998	+	Intron	SNP	A	C	C			2011-2353:2012-296-T	g.chr4:73962998A>C	uc003hgp.2	-						ANKRD17_uc003hgo.2_Intron|ANKRD17_uc003hgq.2_Intron|ANKRD17_uc003hgr.2_Intron	NM_032217	NP_115593
FAT2	2196	broad.mit.edu	37	5	150922707	150922707	+	Missense_Mutation	SNP	T	A	A			2011-2353:2012-296-T	g.chr5:150922707T>A	uc003lue.3	-	9	7994	c.7981A>T	c.(7981-7983)ATC>TTC	p.I2661F	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438
HLA-A	3105	broad.mit.edu	37	6	29911030	29911030	+	Intron	SNP	C	T	T	rs113224809	by1000genomes	2011-2353:2012-296-T	g.chr6:29911030C>T	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_RNA|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107
PTPRN2	5799	broad.mit.edu	37	7	158332568	158332568	+	Intron	SNP	C	T	T			2011-2353:2012-296-T	g.chr7:158332568C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|uc003wnu.1_RNA|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1788069	1788069	+	Intron	SNP	C	T	T	rs143383795	by1000genomes	2011-2353:2012-296-T	g.chr8:1788069C>T	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
NECAB1	64168	broad.mit.edu	37	8	91813957	91813957	+	Intron	SNP	T	A	A			2011-2353:2012-296-T	g.chr8:91813957T>A	uc011lgg.1	+							NM_022351	NP_071746
CSMD3	114788	broad.mit.edu	37	8	113871504	113871504	+	Intron	SNP	G	T	T			2011-2353:2012-296-T	g.chr8:113871504G>T	uc003ynu.2	-						CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CD274	29126	broad.mit.edu	37	9	5467955	5467955	+	3'UTR	SNP	G	A	A	rs2297136	by1000genomes	2011-2353:2012-296-T	g.chr9:5467955G>A	uc003zje.2	+	7					C9orf46_uc003zjd.2_Intron|CD274_uc010mhn.2_RNA|CD274_uc003zjf.2_3'UTR	NM_014143	NP_054862
MELK	9833	broad.mit.edu	37	9	36633214	36633214	+	Intron	SNP	C	G	G			2011-2353:2012-296-T	g.chr9:36633214C>G	uc003zzn.2	+						MELK_uc011lpm.1_Intron|MELK_uc011lpn.1_Intron|MELK_uc011lpo.1_Intron|MELK_uc010mll.2_Intron|MELK_uc011lpp.1_Intron|MELK_uc010mlm.2_Intron|MELK_uc011lpq.1_Intron|MELK_uc011lpr.1_Intron|MELK_uc011lps.1_Intron	NM_014791	NP_055606
RGS7	6000	broad.mit.edu	37	1	241162014	241162015	+	Intron	DNP	CT	AG	AG			2011-2354:2012-295-T	g.chr1:241162014_241162015CT>AG	uc001hyv.2	-						RGS7_uc010pyh.1_Intron|RGS7_uc010pyj.1_Intron|RGS7_uc001hyu.2_Intron|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Intron	NM_002924	NP_002915
HRAS	3265	broad.mit.edu	37	11	533874	533874	+	Missense_Mutation	SNP	T	A	A	rs121913233		2011-2354:2012-295-T	g.chr11:533874T>A	uc001lpv.2	-	3	370	c.182A>T	c.(181-183)CAG>CTG	p.Q61L	HRAS_uc010qvw.1_Missense_Mutation_p.Q61L|HRAS_uc010qvx.1_Missense_Mutation_p.Q61L|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334
B2M	567	broad.mit.edu	37	15	45009596	45009596	+	Intron	SNP	C	A	A			2011-2354:2012-295-T	g.chr15:45009596C>A	uc001zuc.2	+							NM_004048	NP_004039
RPH3AL	9501	broad.mit.edu	37	17	165200	165200	+	Intron	SNP	G	A	A	rs71369091		2011-2354:2012-295-T	g.chr17:165200G>A	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
TP53	7157	broad.mit.edu	37	17	7577085	7577085	+	Missense_Mutation	SNP	C	T	T	rs112431538		2011-2354:2012-295-T	g.chr17:7577085C>T	uc002gim.2	-	8	1047	c.853G>A	c.(853-855)GAG>AAG	p.E285K	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.E285K|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.E153K|TP53_uc010cng.1_Missense_Mutation_p.E153K|TP53_uc002gii.1_Missense_Mutation_p.E153K|TP53_uc010cnh.1_Missense_Mutation_p.E285K|TP53_uc010cni.1_Missense_Mutation_p.E285K|TP53_uc002gij.2_Missense_Mutation_p.E285K	NM_001126112	NP_001119584
MYH2	4620	broad.mit.edu	37	17	10429261	10429261	+	Intron	SNP	C	T	T	rs36082989	by1000genomes	2011-2354:2012-295-T	g.chr17:10429261C>T	uc010coi.2	-						uc002gml.1_Intron|MYH2_uc002gmp.3_Intron|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582
DNMT3A	1788	broad.mit.edu	37	2	25536923	25536923	+	5'UTR	SNP	C	T	T			2011-2354:2012-295-T	g.chr2:25536923C>T	uc002rgc.2	-	2					DNMT3A_uc002rgd.2_5'UTR|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rge.2_5'UTR|DNMT3A_uc002rgf.2_5'UTR	NM_022552	NP_072046
MAP2	4133	broad.mit.edu	37	2	210526161	210526161	+	Intron	SNP	C	A	A			2011-2354:2012-295-T	g.chr2:210526161C>A	uc002vde.1	+						MAP2_uc002vdc.1_Intron|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Intron	NM_002374	NP_002365
ERBB4	2066	broad.mit.edu	37	2	212652918	212652918	+	Intron	SNP	C	G	G			2011-2354:2012-295-T	g.chr2:212652918C>G	uc002veg.1	-						ERBB4_uc002veh.1_Intron|ERBB4_uc010zji.1_Intron|ERBB4_uc010zjj.1_Intron|ERBB4_uc010fut.1_Intron	NM_005235	NP_005226
SYNE1	23345	broad.mit.edu	37	6	152642885	152642885	+	Missense_Mutation	SNP	C	T	T			2011-2354:2012-295-T	g.chr6:152642885C>T	uc010kiw.2	-	83	16656	c.16054G>A	c.(16054-16056)GAA>AAA	p.E5352K	SYNE1_uc003qot.3_Missense_Mutation_p.E5281K|SYNE1_uc003qou.3_Missense_Mutation_p.E5352K|SYNE1_uc010kiz.2_Missense_Mutation_p.E1107K	NM_182961	NP_892006
SRPK2	6733	broad.mit.edu	37	7	104782444	104782444	+	Intron	SNP	G	T	T			2011-2354:2012-295-T	g.chr7:104782444G>T	uc003vct.2	-						SRPK2_uc003vcu.2_Intron|SRPK2_uc003vcv.2_Intron|SRPK2_uc003vcw.1_Intron	NM_182691	NP_872633
WRN	7486	broad.mit.edu	37	8	30916836	30916836	+	Intron	SNP	A	G	G			2011-2354:2012-295-T	g.chr8:30916836A>G	uc003xio.3	+							NM_000553	NP_000544
NOTCH1	4851	broad.mit.edu	37	9	139396851	139396851	+	Missense_Mutation	SNP	C	T	T			2011-2354:2012-295-T	g.chr9:139396851C>T	uc004chz.2	-	28	5257	c.5257G>A	c.(5257-5259)GGG>AGG	p.G1753R		NM_017617	NP_060087
PPP2R3B	28227	broad.mit.edu	37	X	323960	323960	+	Intron	SNP	C	T	T			2011-2354:2012-295-T	g.chrX:323960C>T	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
TTC7B	145567	broad.mit.edu	37	14	91039733	91039733	+	Intron	SNP	C	T	T	rs1286488	by1000genomes	2011-2355:2012-294-T	g.chr14:91039733C>T	uc001xyp.2	-						TTC7B_uc001xyo.2_Intron|TTC7B_uc010ats.2_Intron	NM_001010854	NP_001010854
DOT1L	84444	broad.mit.edu	37	19	2201186	2201186	+	Intron	SNP	C	G	G			2011-2355:2012-294-T	g.chr19:2201186C>G	uc002lvb.3	+							NM_032482	NP_115871
ARHGEF10	9639	broad.mit.edu	37	8	1868030	1868030	+	Intron	SNP	G	A	A	rs73182782	by1000genomes	2011-2355:2012-294-T	g.chr8:1868030G>A	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron|ARHGEF10_uc003wpv.2_Intron|ARHGEF10_uc010lre.2_Intron	NM_014629	NP_055444
MACF1	23499	broad.mit.edu	37	1	39908030	39908030	+	Intron	SNP	C	G	G			2011-2356:2012-293-T	g.chr1:39908030C>G	uc010oiu.1	+						MACF1_uc010ois.1_Intron	NM_033044	NP_149033
ADARB2	105	broad.mit.edu	37	10	1502751	1502751	+	Intron	SNP	A	T	T	rs141602997		2011-2356:2012-293-T	g.chr10:1502751A>T	uc009xhq.2	-							NM_018702	NP_061172
INPP5A	3632	broad.mit.edu	37	10	134540469	134540469	+	Intron	SNP	G	A	A			2011-2356:2012-293-T	g.chr10:134540469G>A	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
GPR123	84435	broad.mit.edu	37	10	134891920	134891921	+	Intron	DNP	TT	GC	GC			2011-2356:2012-293-T	g.chr10:134891920_134891921TT>GC	uc001llw.2	+								
MUC2	4583	broad.mit.edu	37	11	1092973	1092973	+	Missense_Mutation	SNP	C	T	T			2011-2356:2012-293-T	g.chr11:1092973C>T	uc001lsx.1	+	31	11905	c.11878C>T	c.(11878-11880)CCC>TCC	p.P3960S		NM_002457	NP_002448
B4GALNT3	283358	broad.mit.edu	37	12	620844	620844	+	Intron	SNP	C	T	T	rs150970810	by1000genomes	2011-2356:2012-293-T	g.chr12:620844C>T	uc001qii.1	+							NM_173593	NP_775864
HYDIN	54768	broad.mit.edu	37	16	70995845	70995845	+	Intron	SNP	C	T	T	rs138353494		2011-2356:2012-293-T	g.chr16:70995845C>T	uc002ezr.2	-							NM_032821	NP_116210
NCOR1	9611	broad.mit.edu	37	17	15971377	15971377	+	Silent	SNP	G	A	A			2011-2356:2012-293-T	g.chr17:15971377G>A	uc002gpo.2	-	32	4812	c.4572C>T	c.(4570-4572)ACC>ACT	p.T1524T	NCOR1_uc002gpn.2_Silent_p.T1540T|NCOR1_uc002gpm.2_Silent_p.T45T|NCOR1_uc010vwb.1_Silent_p.T108T|NCOR1_uc010coy.2_Silent_p.T432T|NCOR1_uc010vwc.1_Silent_p.T335T	NM_006311	NP_006302
LTBP1	4052	broad.mit.edu	37	2	33359134	33359134	+	Intron	SNP	T	G	G			2011-2356:2012-293-T	g.chr2:33359134T>G	uc002ros.2	+						LTBP1_uc002rot.2_5'Flank|LTBP1_uc002rou.2_5'Flank|LTBP1_uc002rov.2_5'Flank|LTBP1_uc010ymz.1_5'Flank|LTBP1_uc010yna.1_5'Flank	NM_206943	NP_996826
RMND5A	64795	broad.mit.edu	37	2	87626056	87626056	+	Intron	SNP	C	G	G			2011-2356:2012-293-T	g.chr2:87626056C>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87626254	87626254	+	Intron	SNP	C	T	T	rs6745184		2011-2356:2012-293-T	g.chr2:87626254C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644457	87644457	+	Intron	SNP	C	T	T			2011-2356:2012-293-T	g.chr2:87644457C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644462	87644462	+	Intron	SNP	T	G	G			2011-2356:2012-293-T	g.chr2:87644462T>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87656188	87656188	+	Intron	SNP	C	A	A			2011-2356:2012-293-T	g.chr2:87656188C>A	uc002srs.3	+								
PAX3	5077	broad.mit.edu	37	2	223160203	223160203	+	Intron	SNP	C	A	A			2011-2356:2012-293-T	g.chr2:223160203C>A	uc010fwo.2	-						PAX3_uc002vmt.1_Intron|PAX3_uc002vmy.1_Intron|PAX3_uc002vmv.1_Intron|PAX3_uc002vmw.1_Intron|PAX3_uc002vmx.1_Intron|PAX3_uc002vmz.1_Intron|PAX3_uc002vna.1_Intron|CCDC140_uc002vnb.1_5'Flank	NM_181457	NP_852122
PIK3CB	5291	broad.mit.edu	37	3	138383879	138383879	+	Missense_Mutation	SNP	C	G	G			2011-2356:2012-293-T	g.chr3:138383879C>G	uc011bmq.1	-	18	2671	c.2671G>C	c.(2671-2673)GGG>CGG	p.G891R	PIK3CB_uc011bmn.1_Missense_Mutation_p.G403R|PIK3CB_uc011bmo.1_Missense_Mutation_p.G342R|PIK3CB_uc011bmp.1_Missense_Mutation_p.G478R	NM_006219	NP_006210
MUC4	4585	broad.mit.edu	37	3	195503630	195503630	+	Intron	SNP	C	A	A			2011-2356:2012-293-T	g.chr3:195503630C>A	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
SORCS2	57537	broad.mit.edu	37	4	7707890	7707890	+	Intron	SNP	T	C	C	rs112695922		2011-2356:2012-293-T	g.chr4:7707890T>C	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
PIK3R1	5295	broad.mit.edu	37	5	67590534	67590534	+	Intron	SNP	G	C	C			2011-2356:2012-293-T	g.chr5:67590534G>C	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron|PIK3R1_uc003jvc.2_Intron|PIK3R1_uc003jvd.2_Intron|PIK3R1_uc003jve.2_Intron|PIK3R1_uc011crb.1_Intron	NM_181523	NP_852664
EPHA7	2045	broad.mit.edu	37	6	94120398	94120399	+	Missense_Mutation	DNP	GT	AA	AA			2011-2356:2012-293-T	g.chr6:94120398_94120399GT>AA	uc003poe.2	-	3	893_894	c.652_653AC>TT	c.(652-654)ACA>TTA	p.T218L	EPHA7_uc003pof.2_Missense_Mutation_p.T218L|EPHA7_uc011eac.1_Missense_Mutation_p.T218L|EPHA7_uc003pog.3_Missense_Mutation_p.T218L	NM_004440	NP_004431
ZNF804B	219578	broad.mit.edu	37	7	88965325	88965325	+	Missense_Mutation	SNP	A	G	G	rs141887526		2011-2356:2012-293-T	g.chr7:88965325A>G	uc011khi.1	+	4	3567	c.3029A>G	c.(3028-3030)CAC>CGC	p.H1010R		NM_181646	NP_857597
FOXP2	93986	broad.mit.edu	37	7	114268630	114268630	+	Silent	SNP	G	A	A			2011-2356:2012-293-T	g.chr7:114268630G>A	uc003vhb.2	+	4	668	c.294G>A	c.(292-294)GTG>GTA	p.V98V	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.V123V|FOXP2_uc003vha.2_Silent_p.V6V|FOXP2_uc011kmu.1_Silent_p.V98V|FOXP2_uc011kmv.1_Silent_p.V98V|FOXP2_uc010ljz.1_Silent_p.V6V|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_Silent_p.V98V|FOXP2_uc003vgw.2_Silent_p.V123V|FOXP2_uc003vgx.2_Silent_p.V98V|FOXP2_uc003vhd.2_Silent_p.V98V|FOXP2_uc003vhc.2_Silent_p.V123V	NM_014491	NP_055306
PTPRN2	5799	broad.mit.edu	37	7	157509760	157509760	+	Intron	SNP	C	T	T			2011-2356:2012-293-T	g.chr7:157509760C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
CSMD3	114788	broad.mit.edu	37	8	113662398	113662398	+	Missense_Mutation	SNP	G	A	A			2011-2356:2012-293-T	g.chr8:113662398G>A	uc003ynu.2	-	19	3344	c.3185C>T	c.(3184-3186)ACC>ATC	p.T1062I	CSMD3_uc003yns.2_Missense_Mutation_p.T334I|CSMD3_uc003ynt.2_Missense_Mutation_p.T1022I|CSMD3_uc011lhx.1_Missense_Mutation_p.T958I	NM_198123	NP_937756
FLJ43860	389690	broad.mit.edu	37	8	142507389	142507389	+	Intron	SNP	C	T	T	rs140373041	by1000genomes	2011-2356:2012-293-T	g.chr8:142507389C>T	uc003ywi.2	-						FLJ43860_uc011ljs.1_5'Flank|FLJ43860_uc010meu.1_5'Flank	NM_207414	NP_997297
SSU72	29101	broad.mit.edu	37	1	1479051	1479051	+	Intron	SNP	C	G	G			2011-2357:2012-292-T	g.chr1:1479051C>G	uc001agd.2	-						SSU72_uc009vkg.1_3'UTR	NM_014188	NP_054907
CABC1	56997	broad.mit.edu	37	1	227147802	227147802	+	Intron	SNP	A	G	G			2011-2357:2012-292-T	g.chr1:227147802A>G	uc001hqm.1	+						CABC1_uc010pvp.1_Intron|CABC1_uc001hqn.1_Intron|CABC1_uc009xeq.1_Intron|CABC1_uc010pvq.1_Intron	NM_020247	NP_064632
ART1	417	broad.mit.edu	37	11	3675781	3675781	+	Intron	SNP	G	C	C			2011-2357:2012-292-T	g.chr11:3675781G>C	uc001lye.1	+						ART1_uc009yeb.1_Intron	NM_004314	NP_004305
MDM2	4193	broad.mit.edu	37	12	69218402	69218402	+	Nonsense_Mutation	SNP	C	G	G			2011-2357:2012-292-T	g.chr12:69218402C>G	uc001sui.2	+	7	781	c.494C>G	c.(493-495)TCA>TGA	p.S165*	MDM2_uc009zri.2_Nonsense_Mutation_p.S120*|MDM2_uc009zqx.2_Intron|MDM2_uc009zqw.2_Intron|MDM2_uc001suk.2_Intron|MDM2_uc009zqy.1_Nonsense_Mutation_p.S154*|MDM2_uc001sun.3_Intron|MDM2_uc009zqz.2_Nonsense_Mutation_p.S159*|MDM2_uc009zra.2_Intron|MDM2_uc001sum.1_Intron|MDM2_uc009zrd.2_5'UTR|MDM2_uc009zrc.2_5'UTR|MDM2_uc009zre.2_Intron|MDM2_uc009zrf.2_Intron|MDM2_uc001suo.2_Intron|MDM2_uc009zrg.2_Intron|MDM2_uc009zrh.2_Intron	NM_002392	NP_002383
COL4A2	1284	broad.mit.edu	37	13	111134175	111134175	+	Intron	SNP	C	T	T	rs113269533	by1000genomes	2011-2357:2012-292-T	g.chr13:111134175C>T	uc001vqx.2	+							NM_001846	NP_001837
TFDP1	7027	broad.mit.edu	37	13	114279903	114279903	+	Intron	SNP	G	C	C	rs147288683	by1000genomes	2011-2357:2012-292-T	g.chr13:114279903G>C	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
LMF1	64788	broad.mit.edu	37	16	1000027	1000027	+	Intron	SNP	A	C	C			2011-2357:2012-292-T	g.chr16:1000027A>C	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
ABAT	18	broad.mit.edu	37	16	8807164	8807164	+	Intron	SNP	G	T	T			2011-2357:2012-292-T	g.chr16:8807164G>T	uc002czc.3	+						ABAT_uc002czd.3_5'UTR|ABAT_uc010buh.2_5'UTR	NM_020686	NP_065737
PHKG2	5261	broad.mit.edu	37	16	30760548	30760548	+	Intron	SNP	T	G	G			2011-2357:2012-292-T	g.chr16:30760548T>G	uc002dzk.1	+						PHKG2_uc002dzi.1_Intron|PHKG2_uc002dzj.1_Intron|PHKG2_uc002dzl.1_Intron	NM_000294	NP_000285
CYLD	1540	broad.mit.edu	37	16	50830261	50830261	+	Nonsense_Mutation	SNP	C	T	T			2011-2357:2012-292-T	g.chr16:50830261C>T	uc002egp.1	+	19	3128	c.2713C>T	c.(2713-2715)CAA>TAA	p.Q905*	CYLD_uc002egq.1_Nonsense_Mutation_p.Q902*|CYLD_uc002egr.1_Nonsense_Mutation_p.Q902*	NM_015247	NP_056062
CDH13	1012	broad.mit.edu	37	16	83692110	83692110	+	Intron	SNP	C	T	T			2011-2357:2012-292-T	g.chr16:83692110C>T	uc002fgx.2	+						CDH13_uc010vns.1_Intron|CDH13_uc010vnt.1_Intron|CDH13_uc010vnu.1_Intron	NM_001257	NP_001248
CDH13	1012	broad.mit.edu	37	16	83692133	83692133	+	Intron	SNP	G	A	A			2011-2357:2012-292-T	g.chr16:83692133G>A	uc002fgx.2	+						CDH13_uc010vns.1_Intron|CDH13_uc010vnt.1_Intron|CDH13_uc010vnu.1_Intron	NM_001257	NP_001248
NCOR1	9611	broad.mit.edu	37	17	16098172	16098172	+	Intron	SNP	T	C	C			2011-2357:2012-292-T	g.chr17:16098172T>C	uc002gpo.2	-						NCOR1_uc002gpn.2_5'Flank|NCOR1_uc002gpp.1_5'Flank|NCOR1_uc002gpr.2_5'Flank|NCOR1_uc002gps.1_Intron|NCOR1_uc010coz.1_Intron|NCOR1_uc010cpb.1_Intron|NCOR1_uc010cpa.1_Intron|NCOR1_uc002gpu.2_Intron	NM_006311	NP_006302
KIF1A	547	broad.mit.edu	37	2	241720318	241720318	+	Intron	SNP	G	C	C	rs72431760		2011-2357:2012-292-T	g.chr2:241720318G>C	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
CECR5	27440	broad.mit.edu	37	22	17628462	17628462	+	Intron	SNP	C	T	T			2011-2357:2012-292-T	g.chr22:17628462C>T	uc002zmf.2	-						CECR5_uc002zme.2_Intron|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Intron	NM_033070	NP_149061
CNTN6	27255	broad.mit.edu	37	3	1427223	1427223	+	Intron	SNP	T	C	C			2011-2357:2012-292-T	g.chr3:1427223T>C	uc003boz.2	+						CNTN6_uc011asj.1_Intron|CNTN6_uc003bpa.2_Intron	NM_014461	NP_055276
SORCS2	57537	broad.mit.edu	37	4	7707890	7707890	+	Intron	SNP	T	C	C	rs112695922		2011-2357:2012-292-T	g.chr4:7707890T>C	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
FAT4	79633	broad.mit.edu	37	4	126237674	126237674	+	Silent	SNP	G	T	T			2011-2357:2012-292-T	g.chr4:126237674G>T	uc003ifj.3	+	1	108	c.108G>T	c.(106-108)GGG>GGT	p.G36G		NM_024582	NP_078858
PCLO	27445	broad.mit.edu	37	7	82560980	82560980	+	Intron	SNP	T	C	C			2011-2357:2012-292-T	g.chr7:82560980T>C	uc003uhx.2	-						PCLO_uc003uhv.2_Intron|PCLO_uc010lec.2_Intron	NM_033026	NP_149015
TRRAP	8295	broad.mit.edu	37	7	98609856	98609856	+	Missense_Mutation	SNP	A	C	C			2011-2357:2012-292-T	g.chr7:98609856A>C	uc003upp.2	+	72	11667	c.11458A>C	c.(11458-11460)ACC>CCC	p.T3820P	TRRAP_uc011kis.1_Missense_Mutation_p.T3791P|TRRAP_uc003upr.2_Missense_Mutation_p.T3526P|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487
CSMD3	114788	broad.mit.edu	37	8	114389479	114389479	+	Intron	SNP	C	T	T			2011-2357:2012-292-T	g.chr8:114389479C>T	uc003ynu.2	-						CSMD3_uc003ynt.2_5'Flank|CSMD3_uc011lhx.1_Intron|CSMD3_uc010mcx.1_Intron|CSMD3_uc003ynx.3_Intron	NM_198123	NP_937756
EHMT1	79813	broad.mit.edu	37	9	140674708	140674708	+	Intron	SNP	G	A	A			2011-2357:2012-292-T	g.chr9:140674708G>A	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
CSF2RA	1438	broad.mit.edu	37	X	1412738	1412738	+	Intron	SNP	G	A	A			2011-2357:2012-292-T	g.chrX:1412738G>A	uc010nct.2	+						CSF2RA_uc011mhb.1_Intron|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Intron|CSF2RA_uc004cpo.2_Intron|CSF2RA_uc010ncu.2_Intron|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_Intron|CSF2RA_uc004cpr.2_Intron	NM_001161529	NP_001155001
SSU72	29101	broad.mit.edu	37	1	1479057	1479057	+	Intron	SNP	A	T	T	rs61777888		2011-2358:2012-1325-T	g.chr1:1479057A>T	uc001agd.2	-						SSU72_uc009vkg.1_3'UTR	NM_014188	NP_054907
COL11A1	1301	broad.mit.edu	37	1	103352383	103352383	+	Missense_Mutation	SNP	C	T	T			2011-2358:2012-1325-T	g.chr1:103352383C>T	uc001dul.2	-	63	5156	c.4838G>A	c.(4837-4839)AGC>AAC	p.S1613N	COL11A1_uc001duk.2_Missense_Mutation_p.S809N|COL11A1_uc001dum.2_Missense_Mutation_p.S1625N|COL11A1_uc001dun.2_Missense_Mutation_p.S1574N|COL11A1_uc009weh.2_Missense_Mutation_p.S1497N	NM_001854	NP_001845
PDE4DIP	9659	broad.mit.edu	37	1	144903139	144903139	+	Missense_Mutation	SNP	T	A	A			2011-2358:2012-1325-T	g.chr1:144903139T>A	uc001elw.3	-	21	3044	c.2753A>T	c.(2752-2754)GAA>GTA	p.E918V	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.E984V|PDE4DIP_uc001emc.1_Missense_Mutation_p.E918V|PDE4DIP_uc001emd.1_Missense_Mutation_p.E918V|PDE4DIP_uc001emb.1_Missense_Mutation_p.E1081V|PDE4DIP_uc001eme.1_Intron|PDE4DIP_uc001emf.1_Missense_Mutation_p.E703V	NM_014644	NP_055459
ASH1L	55870	broad.mit.edu	37	1	155319043	155319043	+	Intron	SNP	T	G	G			2011-2358:2012-1325-T	g.chr1:155319043T>G	uc009wqq.2	-						RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Intron|MIR555_hsa-mir-555|MI0003561_5'Flank	NM_018489	NP_060959
SPTA1	6708	broad.mit.edu	37	1	158653161	158653161	+	Silent	SNP	C	T	T			2011-2358:2012-1325-T	g.chr1:158653161C>T	uc001fst.1	-	3	589	c.390G>A	c.(388-390)AAG>AAA	p.K130K		NM_003126	NP_003117
SMYD3	64754	broad.mit.edu	37	1	246139751	246139751	+	Intron	SNP	G	A	A			2011-2358:2012-1325-T	g.chr1:246139751G>A	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
ADAM12	8038	broad.mit.edu	37	10	127806836	127806836	+	Intron	SNP	A	G	G			2011-2358:2012-1325-T	g.chr10:127806836A>G	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
AP2A2	161	broad.mit.edu	37	11	980331	980331	+	Intron	SNP	C	G	G			2011-2358:2012-1325-T	g.chr11:980331C>G	uc001lss.2	+						AP2A2_uc001lst.1_Intron|AP2A2_uc009yco.1_Intron|AP2A2_uc001lsu.1_Intron	NM_012305	NP_036437
SHANK2	22941	broad.mit.edu	37	11	70797348	70797348	+	Intron	SNP	A	G	G			2011-2358:2012-1325-T	g.chr11:70797348A>G	uc001oqc.2	-							NM_012309	NP_036441
NAV3	89795	broad.mit.edu	37	12	78593314	78593314	+	Intron	SNP	G	T	T			2011-2358:2012-1325-T	g.chr12:78593314G>T	uc001syp.2	+						NAV3_uc001syo.2_Intron|NAV3_uc010sub.1_Intron|NAV3_uc009zsf.2_Intron	NM_014903	NP_055718
ANO4	121601	broad.mit.edu	37	12	101381342	101381342	+	Missense_Mutation	SNP	C	T	T			2011-2358:2012-1325-T	g.chr12:101381342C>T	uc010svm.1	+	8	1200	c.628C>T	c.(628-630)CGG>TGG	p.R210W	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.R175W|ANO4_uc001thx.2_Missense_Mutation_p.R210W	NM_178826	NP_849148
SYNE2	23224	broad.mit.edu	37	14	64681950	64681950	+	Intron	SNP	G	T	T			2011-2358:2012-1325-T	g.chr14:64681950G>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_Intron|SYNE2_uc010tsi.1_Intron|SYNE2_uc001xgs.2_Intron|SYNE2_uc001xgt.2_5'Flank	NM_015180	NP_055995
INO80	54617	broad.mit.edu	37	15	41324176	41324176	+	Intron	SNP	C	G	G	rs145399822	by1000genomes	2011-2358:2012-1325-T	g.chr15:41324176C>G	uc001zni.2	-						INO80_uc010ucu.1_Intron	NM_017553	NP_060023
DNAH3	55567	broad.mit.edu	37	16	21051126	21051126	+	Intron	SNP	C	T	T			2011-2358:2012-1325-T	g.chr16:21051126C>T	uc010vbe.1	-							NM_017539	NP_060009
FANCA	2175	broad.mit.edu	37	16	89812778	89812778	+	Intron	SNP	G	A	A	rs45524337	byFrequency;by1000genomes	2011-2358:2012-1325-T	g.chr16:89812778G>A	uc002fou.1	-						FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_Intron	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89812809	89812809	+	Intron	SNP	C	G	G	rs17233609	by1000genomes	2011-2358:2012-1325-T	g.chr16:89812809C>G	uc002fou.1	-						FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_Intron	NM_000135	NP_000126
ABR	29	broad.mit.edu	37	17	1046605	1046605	+	Intron	SNP	G	A	A			2011-2358:2012-1325-T	g.chr17:1046605G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
PER1	5187	broad.mit.edu	37	17	8056059	8056059	+	5'Flank	SNP	C	T	T			2011-2358:2012-1325-T	g.chr17:8056059C>T	uc002gkd.2	-						PER1_uc010vuq.1_5'Flank|PER1_uc010vur.1_Intron|PER1_uc010vus.1_5'Flank	NM_002616	NP_002607
BZRAP1	9256	broad.mit.edu	37	17	56405454	56405454	+	5'UTR	SNP	C	T	T			2011-2358:2012-1325-T	g.chr17:56405454C>T	uc002ivx.3	-	1					BZRAP1_uc010dcs.2_5'UTR|BZRAP1_uc010wnt.1_5'UTR|uc010dct.1_5'Flank|uc010dcu.1_5'Flank	NM_004758	NP_004749
BRIP1	83990	broad.mit.edu	37	17	59770942	59770942	+	Intron	SNP	G	T	T			2011-2358:2012-1325-T	g.chr17:59770942G>T	uc002izk.1	-						BRIP1_uc002izl.1_Intron	NM_032043	NP_114432
SNTG2	54221	broad.mit.edu	37	2	961054	961054	+	Intron	SNP	A	G	G	rs148475182	by1000genomes	2011-2358:2012-1325-T	g.chr2:961054A>G	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
RMND5A	64795	broad.mit.edu	37	2	87623808	87623808	+	Intron	SNP	G	A	A			2011-2358:2012-1325-T	g.chr2:87623808G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87623844	87623844	+	Intron	SNP	C	T	T	rs139485573	by1000genomes	2011-2358:2012-1325-T	g.chr2:87623844C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87626246	87626246	+	Intron	SNP	G	A	A			2011-2358:2012-1325-T	g.chr2:87626246G>A	uc002srs.3	+								
NFE2L2	4780	broad.mit.edu	37	2	178098944	178098944	+	Missense_Mutation	SNP	C	T	T			2011-2358:2012-1325-T	g.chr2:178098944C>T	uc002ulh.3	-	2	656	c.101G>A	c.(100-102)CGA>CAA	p.R34Q	NFE2L2_uc002ulg.3_Missense_Mutation_p.R18Q|NFE2L2_uc010zfa.1_Missense_Mutation_p.R18Q|NFE2L2_uc002uli.3_Missense_Mutation_p.R18Q|NFE2L2_uc010fra.2_Missense_Mutation_p.R18Q|NFE2L2_uc010frb.2_Missense_Mutation_p.R18Q	NM_006164	NP_006155
TTN	7273	broad.mit.edu	37	2	179431660	179431660	+	Missense_Mutation	SNP	T	C	C			2011-2358:2012-1325-T	g.chr2:179431660T>C	uc010zfg.1	-	275	71719	c.71495A>G	c.(71494-71496)AAA>AGA	p.K23832R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K17527R|TTN_uc010zfi.1_Missense_Mutation_p.K17460R|TTN_uc010zfj.1_Missense_Mutation_p.K17335R	NM_133378	NP_596869
PTK6	5753	broad.mit.edu	37	20	62161418	62161418	+	Intron	SNP	G	C	C	rs374800	by1000genomes	2011-2358:2012-1325-T	g.chr20:62161418G>C	uc002yfg.2	-						PTK6_uc011aay.1_Intron|PTK6_uc011aaz.1_Missense_Mutation_p.T156S	NM_005975	NP_005966
C21orf56	84221	broad.mit.edu	37	21	47603426	47603426	+	5'UTR	SNP	T	C	C	rs141064018	by1000genomes	2011-2358:2012-1325-T	g.chr21:47603426T>C	uc011afu.1	-	2					C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
PHF21B	112885	broad.mit.edu	37	22	45280198	45280198	+	Intron	SNP	C	G	G			2011-2358:2012-1325-T	g.chr22:45280198C>G	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
EPM2AIP1	9852	broad.mit.edu	37	3	37034725	37034725	+	Translation_Start_Site	SNP	T	C	C			2011-2358:2012-1325-T	g.chr3:37034725T>C	uc003cgk.2	-	1	71	c.-156A>G	c.(-158--154)ATATC>ATGTC		MLH1_uc011aye.1_5'Flank|MLH1_uc003cgl.2_5'Flank|MLH1_uc011ayb.1_5'Flank|MLH1_uc010hge.2_5'Flank|MLH1_uc003cgn.3_5'Flank|MLH1_uc011ayc.1_5'Flank|MLH1_uc011ayd.1_5'Flank|MLH1_uc003cgo.2_5'Flank	NM_014805	NP_055620
POLQ	10721	broad.mit.edu	37	3	121207855	121207855	+	Missense_Mutation	SNP	A	G	G			2011-2358:2012-1325-T	g.chr3:121207855A>G	uc003eee.3	-	16	4052	c.3923T>C	c.(3922-3924)GTT>GCT	p.V1308A	POLQ_uc003eed.2_Missense_Mutation_p.V480A	NM_199420	NP_955452
SORBS2	8470	broad.mit.edu	37	4	186718044	186718044	+	Intron	SNP	A	G	G	rs10866284	by1000genomes	2011-2358:2012-1325-T	g.chr4:186718044A>G	uc003iyl.2	-						SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Intron|SORBS2_uc011cky.1_Intron|SORBS2_uc003iyp.2_Intron	NM_021069	NP_066547
CEP72	55722	broad.mit.edu	37	5	650097	650097	+	Intron	SNP	T	C	C			2011-2358:2012-1325-T	g.chr5:650097T>C	uc003jbf.2	+							NM_018140	NP_060610
SLC6A3	6531	broad.mit.edu	37	5	1423019	1423019	+	Intron	SNP	C	T	T			2011-2358:2012-1325-T	g.chr5:1423019C>T	uc003jck.2	-							NM_001044	NP_001035
CTNND2	1501	broad.mit.edu	37	5	11732225	11732225	+	Intron	SNP	C	T	T			2011-2358:2012-1325-T	g.chr5:11732225C>T	uc003jfa.1	-						CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron	NM_001332	NP_001323
IL6ST	3572	broad.mit.edu	37	5	55248240	55248240	+	Intron	SNP	G	A	A	rs111767547	by1000genomes	2011-2358:2012-1325-T	g.chr5:55248240G>A	uc003jqq.2	-						IL6ST_uc010iwb.2_Intron|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Intron|IL6ST_uc003jqr.2_Intron|IL6ST_uc010iwe.1_5'Flank	NM_002184	NP_002175
HMP19	51617	broad.mit.edu	37	5	173495830	173495830	+	Intron	SNP	A	G	G	rs28571655		2011-2358:2012-1325-T	g.chr5:173495830A>G	uc003mcx.2	+							NM_015980	NP_057064
HIST1H2AK	8330	broad.mit.edu	37	6	27805991	27805991	+	Silent	SNP	G	T	T	rs141332149	byFrequency	2011-2358:2012-1325-T	g.chr6:27805991G>T	uc003njs.2	-	1	127	c.127C>A	c.(127-129)CGG>AGG	p.R43R	HIST1H2BN_uc003njt.1_5'Flank|HIST1H2BN_uc003nju.1_5'Flank|HIST1H2BN_uc003njv.2_5'Flank	NM_003510	NP_003501
GPR115	221393	broad.mit.edu	37	6	47680158	47680158	+	Silent	SNP	T	C	C			2011-2358:2012-1325-T	g.chr6:47680158T>C	uc003oza.1	+	5	624	c.366T>C	c.(364-366)TTT>TTC	p.F122F	GPR115_uc003oyz.1_Silent_p.F179F|GPR115_uc003ozb.1_Silent_p.F120F	NM_153838	NP_722580
SYNE1	23345	broad.mit.edu	37	6	152629645	152629645	+	Silent	SNP	C	T	T			2011-2358:2012-1325-T	g.chr6:152629645C>T	uc010kiw.2	-	91	17927	c.17325G>A	c.(17323-17325)CAG>CAA	p.Q5775Q	SYNE1_uc010kiv.2_Silent_p.Q299Q|SYNE1_uc003qos.3_Silent_p.Q299Q|SYNE1_uc003qot.3_Silent_p.Q5704Q|SYNE1_uc003qou.3_Silent_p.Q5775Q	NM_182961	NP_892006
WBSCR17	64409	broad.mit.edu	37	7	70886069	70886069	+	Missense_Mutation	SNP	G	A	A			2011-2358:2012-1325-T	g.chr7:70886069G>A	uc003tvy.2	+	5	940	c.940G>A	c.(940-942)GGA>AGA	p.G314R	WBSCR17_uc003tvz.2_Missense_Mutation_p.G13R	NM_022479	NP_071924
BRAF	673	broad.mit.edu	37	7	140434330	140434330	+	3'UTR	SNP	T	A	A			2011-2358:2012-1325-T	g.chr7:140434330T>A	uc003vwc.3	-	18						NM_004333	NP_004324
CNTNAP2	26047	broad.mit.edu	37	7	147964053	147964053	+	Intron	SNP	C	T	T			2011-2358:2012-1325-T	g.chr7:147964053C>T	uc003weu.1	+							NM_014141	NP_054860
PTPRN2	5799	broad.mit.edu	37	7	157851125	157851125	+	Intron	SNP	C	T	T			2011-2358:2012-1325-T	g.chr7:157851125C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157851342	157851342	+	Intron	SNP	G	A	A			2011-2358:2012-1325-T	g.chr7:157851342G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158316206	158316206	+	Intron	SNP	G	A	A			2011-2358:2012-1325-T	g.chr7:158316206G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1788062	1788062	+	Intron	SNP	G	C	C			2011-2358:2012-1325-T	g.chr8:1788062G>C	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
ARHGEF10	9639	broad.mit.edu	37	8	1788101	1788101	+	Intron	SNP	T	C	C			2011-2358:2012-1325-T	g.chr8:1788101T>C	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
UBR5	51366	broad.mit.edu	37	8	103424808	103424808	+	5'Flank	SNP	G	A	A	rs35655607	by1000genomes	2011-2358:2012-1325-T	g.chr8:103424808G>A	uc003ykr.1	-						UBR5_uc003yks.1_5'Flank	NM_015902	NP_056986
CSMD3	114788	broad.mit.edu	37	8	113569031	113569031	+	Nonsense_Mutation	SNP	C	A	A			2011-2358:2012-1325-T	g.chr8:113569031C>A	uc003ynu.2	-	25	4354	c.4195G>T	c.(4195-4197)GAG>TAG	p.E1399*	CSMD3_uc003yns.2_Nonsense_Mutation_p.E671*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.E1359*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.E1295*	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113933874	113933874	+	Missense_Mutation	SNP	G	C	C			2011-2358:2012-1325-T	g.chr8:113933874G>C	uc003ynu.2	-	10	1774	c.1615C>G	c.(1615-1617)CAC>GAC	p.H539D	CSMD3_uc003ynt.2_Missense_Mutation_p.H499D|CSMD3_uc011lhx.1_Missense_Mutation_p.H435D	NM_198123	NP_937756
FAM135B	51059	broad.mit.edu	37	8	139160746	139160746	+	Intron	SNP	C	A	A			2011-2358:2012-1325-T	g.chr8:139160746C>A	uc003yuy.2	-						FAM135B_uc003yux.2_Intron|FAM135B_uc003yuz.2_Intron|FAM135B_uc003yva.2_Intron|FAM135B_uc003yvb.2_Intron	NM_015912	NP_056996
FANCC	2176	broad.mit.edu	37	9	97912213	97912213	+	Silent	SNP	G	A	A			2011-2358:2012-1325-T	g.chr9:97912213G>A	uc004avh.2	-	7	940	c.678C>T	c.(676-678)GCC>GCT	p.A226A	FANCC_uc004avi.3_Silent_p.A226A|FANCC_uc010mrm.1_RNA|FANCC_uc011lul.1_RNA	NM_000136	NP_000127
NOTCH1	4851	broad.mit.edu	37	9	139399111	139399111	+	Intron	SNP	C	T	T			2011-2358:2012-1325-T	g.chr9:139399111C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
ENTPD2	954	broad.mit.edu	37	9	139944692	139944692	+	Intron	SNP	C	T	T	rs113613518		2011-2358:2012-1325-T	g.chr9:139944692C>T	uc004ckw.1	-						ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Intron	NM_203468	NP_982293
RGAG1	57529	broad.mit.edu	37	X	109697237	109697237	+	Missense_Mutation	SNP	C	T	T	rs140356169	byFrequency	2011-2358:2012-1325-T	g.chrX:109697237C>T	uc004eor.1	+	3	3638	c.3392C>T	c.(3391-3393)GCG>GTG	p.A1131V	RGAG1_uc011msr.1_Missense_Mutation_p.A1131V	NM_020769	NP_065820
MAGEC2	51438	broad.mit.edu	37	X	141290639	141290639	+	3'UTR	SNP	A	T	T			2011-2358:2012-1325-T	g.chrX:141290639A>T	uc004fbu.1	-	3						NM_016249	NP_057333
C1orf173	127254	broad.mit.edu	37	1	75072264	75072264	+	Intron	SNP	G	T	T	rs41289216	by1000genomes	2011-2359:2012-1341-T	g.chr1:75072264G>T	uc001dgg.2	-						uc001dgh.2_Intron|C1orf173_uc001dgi.3_Intron	NM_001002912	NP_001002912
PCDH15	65217	broad.mit.edu	37	10	55721532	55721532	+	Missense_Mutation	SNP	C	T	T			2011-2359:2012-1341-T	g.chr10:55721532C>T	uc001jju.1	-	22	3384	c.2989G>A	c.(2989-2991)GAA>AAA	p.E997K	PCDH15_uc010qhq.1_Missense_Mutation_p.E1002K|PCDH15_uc010qhr.1_Missense_Mutation_p.E997K|PCDH15_uc010qhs.1_Missense_Mutation_p.E1009K|PCDH15_uc010qht.1_Missense_Mutation_p.E1004K|PCDH15_uc010qhu.1_Missense_Mutation_p.E997K|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.E997K|PCDH15_uc010qhw.1_Missense_Mutation_p.E960K|PCDH15_uc010qhx.1_Missense_Mutation_p.E926K|PCDH15_uc010qhy.1_Missense_Mutation_p.E1002K|PCDH15_uc010qhz.1_Missense_Mutation_p.E997K|PCDH15_uc010qia.1_Missense_Mutation_p.E975K|PCDH15_uc010qib.1_Missense_Mutation_p.E975K	NM_033056	NP_149045
PIK3C2G	5288	broad.mit.edu	37	12	18656218	18656218	+	Nonsense_Mutation	SNP	T	A	A			2011-2359:2012-1341-T	g.chr12:18656218T>A	uc001rdt.2	+	22	3013	c.2897T>A	c.(2896-2898)TTG>TAG	p.L966*	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Nonsense_Mutation_p.L1007*|PIK3C2G_uc010sic.1_Nonsense_Mutation_p.L785*	NM_004570	NP_004561
MCF2L	23263	broad.mit.edu	37	13	113717797	113717797	+	Intron	SNP	T	C	C	rs12584235	by1000genomes	2011-2359:2012-1341-T	g.chr13:113717797T>C	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron|MCF2L_uc001vst.1_Intron	NM_001112732	NP_001106203
RAB40C	57799	broad.mit.edu	37	16	664497	664497	+	Intron	SNP	C	T	T			2011-2359:2012-1341-T	g.chr16:664497C>T	uc002chr.2	+						RAB40C_uc002chq.2_Intron	NM_021168	NP_066991
TCF25	22980	broad.mit.edu	37	16	89945823	89945823	+	Intron	SNP	A	G	G			2011-2359:2012-1341-T	g.chr16:89945823A>G	uc002fpb.2	+						TCF25_uc010vpp.1_Intron	NM_014972	NP_055787
MYH13	8735	broad.mit.edu	37	17	10253892	10253892	+	Silent	SNP	C	T	T			2011-2359:2012-1341-T	g.chr17:10253892C>T	uc002gmk.1	-	12	1215	c.1125G>A	c.(1123-1125)GCG>GCA	p.A375A	MYH13_uc010vvf.1_Silent_p.A50A	NM_003802	NP_003793
ABCA9	10350	broad.mit.edu	37	17	67039878	67039878	+	Intron	SNP	C	A	A			2011-2359:2012-1341-T	g.chr17:67039878C>A	uc002jhu.2	-						ABCA9_uc010dez.2_Intron|ABCA9_uc002jhv.2_Intron	NM_080283	NP_525022
RMND5A	64795	broad.mit.edu	37	2	87653136	87653136	+	Intron	SNP	G	C	C			2011-2359:2012-1341-T	g.chr2:87653136G>C	uc002srs.3	+								
TTLL8	164714	broad.mit.edu	37	22	50467412	50467412	+	Intron	SNP	C	T	T			2011-2359:2012-1341-T	g.chr22:50467412C>T	uc011ark.1	-							NM_001080447	NP_001073916
ANKRD17	26057	broad.mit.edu	37	4	74012462	74012462	+	Intron	SNP	A	T	T	rs13149759	by1000genomes	2011-2359:2012-1341-T	g.chr4:74012462A>T	uc003hgp.2	-						ANKRD17_uc003hgo.2_Intron|ANKRD17_uc003hgq.2_Intron|ANKRD17_uc003hgr.2_Intron|ANKRD17_uc011cbd.1_Intron	NM_032217	NP_115593
RPS6KA2	6196	broad.mit.edu	37	6	166995355	166995355	+	Intron	SNP	G	T	T			2011-2359:2012-1341-T	g.chr6:166995355G>T	uc003qvb.1	-						RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
SMOC2	64094	broad.mit.edu	37	6	169019161	169019161	+	Intron	SNP	G	C	C	rs11969678	by1000genomes	2011-2359:2012-1341-T	g.chr6:169019161G>C	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_Intron	NM_022138	NP_071421
MMP16	4325	broad.mit.edu	37	8	89180175	89180175	+	Silent	SNP	T	A	A			2011-2359:2012-1341-T	g.chr8:89180175T>A	uc003yeb.3	-	4	714	c.432A>T	c.(430-432)GGA>GGT	p.G144G	MMP16_uc003yec.2_Silent_p.G144G	NM_005941	NP_005932
NOTCH1	4851	broad.mit.edu	37	9	139403004	139403004	+	Intron	SNP	C	A	A			2011-2359:2012-1341-T	g.chr9:139403004C>A	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
AGRN	375790	broad.mit.edu	37	1	966171	966171	+	Intron	SNP	T	C	C	rs148331946	by1000genomes	2011-2360:2012-325-T	g.chr1:966171T>C	uc001ack.1	+							NM_198576	NP_940978
ASH1L	55870	broad.mit.edu	37	1	155451950	155451950	+	Silent	SNP	C	T	T			2011-2360:2012-325-T	g.chr1:155451950C>T	uc009wqq.2	-	3	1191	c.711G>A	c.(709-711)CCG>CCA	p.P237P	ASH1L_uc001fkt.2_Silent_p.P237P|ASH1L_uc009wqr.1_Silent_p.P237P	NM_018489	NP_060959
MDM4	4194	broad.mit.edu	37	1	204518842	204518842	+	3'UTR	SNP	C	A	A	rs4245739	by1000genomes	2011-2360:2012-325-T	g.chr1:204518842C>A	uc001hba.2	+	11					MDM4_uc001hbd.1_RNA|MDM4_uc010pqx.1_3'UTR|MDM4_uc001hay.1_3'UTR|MDM4_uc001hbb.2_3'UTR|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_Intron|MDM4_uc009xbe.1_Intron	NM_002393	NP_002384
NINJ2	4815	broad.mit.edu	37	12	692365	692365	+	Intron	SNP	G	A	A			2011-2360:2012-325-T	g.chr12:692365G>A	uc001qil.2	-						NINJ2_uc010sdr.1_Intron|NINJ2_uc010sds.1_Intron	NM_016533	NP_057617
COL4A2	1284	broad.mit.edu	37	13	111038187	111038187	+	Intron	SNP	T	C	C			2011-2360:2012-325-T	g.chr13:111038187T>C	uc001vqx.2	+							NM_001846	NP_001837
ATP11A	23250	broad.mit.edu	37	13	113527471	113527471	+	Intron	SNP	G	A	A			2011-2360:2012-325-T	g.chr13:113527471G>A	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc010ago.2_Intron	NM_015205	NP_056020
RPH3AL	9501	broad.mit.edu	37	17	164593	164593	+	Intron	SNP	A	G	G	rs62053698	by1000genomes	2011-2360:2012-325-T	g.chr17:164593A>G	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
TP53	7157	broad.mit.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	A	A			2011-2360:2012-325-T	g.chr17:7578403C>A	uc002gim.2	-	5	721	c.527G>T	c.(526-528)TGC>TTC	p.C176F	TP53_uc002gig.1_Missense_Mutation_p.C176F|TP53_uc002gih.2_Missense_Mutation_p.C176F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.C44F|TP53_uc010cng.1_Missense_Mutation_p.C44F|TP53_uc002gii.1_Missense_Mutation_p.C44F|TP53_uc010cnh.1_Missense_Mutation_p.C176F|TP53_uc010cni.1_Missense_Mutation_p.C176F|TP53_uc002gij.2_Missense_Mutation_p.C176F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.C83F|TP53_uc002gio.2_Missense_Mutation_p.C44F|TP53_uc010vug.1_Missense_Mutation_p.C137F	NM_001126112	NP_001119584
INPP4A	3631	broad.mit.edu	37	2	99060983	99060983	+	5'Flank	SNP	G	C	C			2011-2360:2012-325-T	g.chr2:99060983G>C	uc002syy.2	+						INPP4A_uc010yvj.1_5'Flank|INPP4A_uc010yvk.1_5'Flank|INPP4A_uc002syx.2_5'Flank|INPP4A_uc010fik.2_5'Flank	NM_001134224	NP_001127696
COL6A3	1293	broad.mit.edu	37	2	238245128	238245128	+	Missense_Mutation	SNP	G	A	A			2011-2360:2012-325-T	g.chr2:238245128G>A	uc002vwl.2	-	40	8900	c.8615C>T	c.(8614-8616)ACG>ATG	p.T2872M	COL6A3_uc002vwo.2_Missense_Mutation_p.T2666M|COL6A3_uc010znj.1_Missense_Mutation_p.T2265M|COL6A3_uc002vwj.2_Missense_Mutation_p.T253M	NM_004369	NP_004360
ASXL1	171023	broad.mit.edu	37	20	30945739	30945739	+	5'Flank	SNP	A	C	C			2011-2360:2012-325-T	g.chr20:30945739A>C	uc002wxs.2	+						ASXL1_uc002wxr.1_5'Flank	NM_015338	NP_056153
INPP4B	8821	broad.mit.edu	37	4	143067038	143067038	+	Missense_Mutation	SNP	C	T	T			2011-2360:2012-325-T	g.chr4:143067038C>T	uc003iix.3	-	19	2270	c.1675G>A	c.(1675-1677)GAA>AAA	p.E559K	INPP4B_uc003iiw.3_Missense_Mutation_p.E559K|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Missense_Mutation_p.E374K|INPP4B_uc011cho.1_RNA|INPP4B_uc011chp.1_Missense_Mutation_p.E430K	NM_003866	NP_003857
AHRR	57491	broad.mit.edu	37	5	398312	398312	+	Intron	SNP	G	A	A			2011-2360:2012-325-T	g.chr5:398312G>A	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
MAP3K1	4214	broad.mit.edu	37	5	56177571	56177571	+	Missense_Mutation	SNP	C	A	A			2011-2360:2012-325-T	g.chr5:56177571C>A	uc003jqw.3	+	14	3045	c.2544C>A	c.(2542-2544)CAC>CAA	p.H848Q		NM_005921	NP_005912
HLA-F	3134	broad.mit.edu	37	6	29691841	29691841	+	Intron	SNP	C	T	T			2011-2360:2012-325-T	g.chr6:29691841C>T	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
PPP1R14C	81706	broad.mit.edu	37	6	150518982	150518982	+	Intron	SNP	C	T	T			2011-2360:2012-325-T	g.chr6:150518982C>T	uc003qnt.2	+							NM_030949	NP_112211
SYNE1	23345	broad.mit.edu	37	6	152523036	152523036	+	Nonsense_Mutation	SNP	G	A	A			2011-2360:2012-325-T	g.chr6:152523036G>A	uc010kiw.2	-	127	23670	c.23068C>T	c.(23068-23070)CGA>TGA	p.R7690*	SYNE1_uc010kiv.2_Nonsense_Mutation_p.R2214*|SYNE1_uc003qos.3_Nonsense_Mutation_p.R2214*|SYNE1_uc003qot.3_Nonsense_Mutation_p.R7619*|SYNE1_uc003qou.3_Nonsense_Mutation_p.R7690*|SYNE1_uc003qor.3_Nonsense_Mutation_p.R590*	NM_182961	NP_892006
UPK3B	80761	broad.mit.edu	37	7	76154009	76154009	+	Intron	SNP	G	A	A			2011-2360:2012-325-T	g.chr7:76154009G>A	uc003ufq.2	+						UPK3B_uc003ufo.2_Intron	NM_030570	NP_085047
MLL3	58508	broad.mit.edu	37	7	151879592	151879592	+	Nonsense_Mutation	SNP	G	A	A			2011-2360:2012-325-T	g.chr7:151879592G>A	uc003wla.2	-	36	5572	c.5353C>T	c.(5353-5355)CAA>TAA	p.Q1785*	MLL3_uc003wkz.2_Nonsense_Mutation_p.Q846*	NM_170606	NP_733751
PKHD1L1	93035	broad.mit.edu	37	8	110476470	110476470	+	Missense_Mutation	SNP	G	A	A			2011-2360:2012-325-T	g.chr8:110476470G>A	uc003yne.2	+	49	7513	c.7409G>A	c.(7408-7410)CGG>CAG	p.R2470Q		NM_177531	NP_803875
PARP10	84875	broad.mit.edu	37	8	145055714	145055714	+	Intron	SNP	A	G	G	rs141035878		2011-2360:2012-325-T	g.chr8:145055714A>G	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
NOTCH1	4851	broad.mit.edu	37	9	139402525	139402525	+	Missense_Mutation	SNP	C	T	T			2011-2360:2012-325-T	g.chr9:139402525C>T	uc004chz.2	-	21	3392	c.3392G>A	c.(3391-3393)TGC>TAC	p.C1131Y	NOTCH1_uc004cia.1_Missense_Mutation_p.C361Y	NM_017617	NP_060087
NBPF1	55672	broad.mit.edu	37	1	16908080	16908080	+	Intron	SNP	G	A	A	rs2119896	by1000genomes	2011-2361:2012-1294-T	g.chr1:16908080G>A	uc009vos.1	-						NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
USH2A	7399	broad.mit.edu	37	1	215844408	215844409	+	Missense_Mutation	DNP	TG	AA	AA			2011-2361:2012-1294-T	g.chr1:215844408_215844409TG>AA	uc001hku.1	-	64	14425_14426	c.14038_14039CA>TT	c.(14038-14040)CAG>TTG	p.Q4680L		NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	215990360	215990360	+	Silent	SNP	A	T	T			2011-2361:2012-1294-T	g.chr1:215990360A>T	uc001hku.1	-	48	9936	c.9549T>A	c.(9547-9549)ATT>ATA	p.I3183I		NM_206933	NP_996816
OR5L2	26338	broad.mit.edu	37	11	55595574	55595574	+	Missense_Mutation	SNP	A	T	T			2011-2361:2012-1294-T	g.chr11:55595574A>T	uc001nhy.1	+	1	880	c.880A>T	c.(880-882)AAT>TAT	p.N294Y		NM_001004739	NP_001004739
AHNAK	79026	broad.mit.edu	37	11	62298698	62298699	+	Missense_Mutation	DNP	GC	AA	AA			2011-2361:2012-1294-T	g.chr11:62298698_62298699GC>AA	uc001ntl.2	-	5	3490_3491	c.3190_3191GC>TT	c.(3190-3192)GCT>TTT	p.A1064F	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
KDM5A	5927	broad.mit.edu	37	12	464479	464479	+	Intron	SNP	C	A	A			2011-2361:2012-1294-T	g.chr12:464479C>A	uc001qif.1	-						KDM5A_uc001qie.1_Intron|KDM5A_uc010sdn.1_Intron|KDM5A_uc010sdo.1_Intron	NM_001042603	NP_001036068
ACTN1	87	broad.mit.edu	37	14	69395812	69395812	+	Intron	SNP	C	G	G	rs4435181		2011-2361:2012-1294-T	g.chr14:69395812C>G	uc001xkl.2	-						ACTN1_uc010ttb.1_Intron|ACTN1_uc001xkm.2_Intron|ACTN1_uc001xkn.2_Intron|ACTN1_uc001xko.1_Intron|ACTN1_uc010ttd.1_Intron	NM_001102	NP_001093
DICER1	23405	broad.mit.edu	37	14	95561955	95561955	+	Intron	SNP	C	T	T			2011-2361:2012-1294-T	g.chr14:95561955C>T	uc001ydw.2	-						DICER1_uc010avh.1_Intron|DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron|DICER1_uc001ydy.1_3'UTR	NM_030621	NP_085124
CSNK1G1	53944	broad.mit.edu	37	15	64648348	64648348	+	5'UTR	SNP	C	A	A			2011-2361:2012-1294-T	g.chr15:64648348C>A	uc002anf.2	-	1					CSNK1G1_uc002anh.1_5'UTR|CSNK1G1_uc002anj.2_Intron|CSNK1G1_uc010uip.1_Intron	NM_022048	NP_071331
LMF1	64788	broad.mit.edu	37	16	1003917	1003917	+	Intron	SNP	C	T	T			2011-2361:2012-1294-T	g.chr16:1003917C>T	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
ABR	29	broad.mit.edu	37	17	1021169	1021169	+	Intron	SNP	G	A	A			2011-2361:2012-1294-T	g.chr17:1021169G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
TP53	7157	broad.mit.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	rs28934578		2011-2361:2012-1294-T	g.chr17:7578406C>T	uc002gim.2	-	5	718	c.524G>A	c.(523-525)CGC>CAC	p.R175H	TP53_uc002gig.1_Missense_Mutation_p.R175H|TP53_uc002gih.2_Missense_Mutation_p.R175H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R43H|TP53_uc010cng.1_Missense_Mutation_p.R43H|TP53_uc002gii.1_Missense_Mutation_p.R43H|TP53_uc010cnh.1_Missense_Mutation_p.R175H|TP53_uc010cni.1_Missense_Mutation_p.R175H|TP53_uc002gij.2_Missense_Mutation_p.R175H|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R82H|TP53_uc002gio.2_Missense_Mutation_p.R43H|TP53_uc010vug.1_Missense_Mutation_p.R136H	NM_001126112	NP_001119584
MYH13	8735	broad.mit.edu	37	17	10261093	10261093	+	Missense_Mutation	SNP	C	G	G			2011-2361:2012-1294-T	g.chr17:10261093C>G	uc002gmk.1	-	8	787	c.697G>C	c.(697-699)GGA>CGA	p.G233R		NM_003802	NP_003793
ABCA9	10350	broad.mit.edu	37	17	67013994	67013994	+	Intron	SNP	A	T	T			2011-2361:2012-1294-T	g.chr17:67013994A>T	uc002jhu.2	-						ABCA9_uc010dez.2_Intron	NM_080283	NP_525022
ZNF443	10224	broad.mit.edu	37	19	12541141	12541141	+	Silent	SNP	C	A	A			2011-2361:2012-1294-T	g.chr19:12541141C>A	uc002mtu.2	-	4	2043	c.1845G>T	c.(1843-1845)CCG>CCT	p.P615P		NM_005815	NP_005806
RMND5A	64795	broad.mit.edu	37	2	87656072	87656072	+	Intron	SNP	C	G	G			2011-2361:2012-1294-T	g.chr2:87656072C>G	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	142044180	142044180	+	Intron	SNP	C	G	G			2011-2361:2012-1294-T	g.chr2:142044180C>G	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179421829	179421829	+	Missense_Mutation	SNP	G	C	C			2011-2361:2012-1294-T	g.chr2:179421829G>C	uc010zfg.1	-	279	80572	c.80348C>G	c.(80347-80349)TCT>TGT	p.S26783C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S20478C|TTN_uc010zfi.1_Missense_Mutation_p.S20411C|TTN_uc010zfj.1_Missense_Mutation_p.S20286C	NM_133378	NP_596869
CUL3	8452	broad.mit.edu	37	2	225339256	225339256	+	Intron	SNP	T	C	C			2011-2361:2012-1294-T	g.chr2:225339256T>C	uc002vny.2	-						CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Intron	NM_003590	NP_003581
ASXL1	171023	broad.mit.edu	37	20	30945739	30945739	+	5'Flank	SNP	A	C	C			2011-2361:2012-1294-T	g.chr20:30945739A>C	uc002wxs.2	+						ASXL1_uc002wxr.1_5'Flank	NM_015338	NP_056153
ASXL1	171023	broad.mit.edu	37	20	30945745	30945745	+	5'Flank	SNP	A	C	C			2011-2361:2012-1294-T	g.chr20:30945745A>C	uc002wxs.2	+						ASXL1_uc002wxr.1_5'Flank	NM_015338	NP_056153
BAGE2	85319	broad.mit.edu	37	21	11098891	11098891	+	5'UTR	SNP	G	A	A			2011-2361:2012-1294-T	g.chr21:11098891G>A	uc002yit.1	-	1					BAGE_uc002yix.2_RNA	NM_182482	NP_872288
NF2	4771	broad.mit.edu	37	22	30032864	30032864	+	Missense_Mutation	SNP	A	G	G			2011-2361:2012-1294-T	g.chr22:30032864A>G	uc003age.3	+	2	682	c.239A>G	c.(238-240)AAG>AGG	p.K80R	NF2_uc003afy.3_Missense_Mutation_p.K80R|NF2_uc003afz.3_Intron|NF2_uc003agf.3_Missense_Mutation_p.K80R|NF2_uc003agb.3_5'UTR|NF2_uc003agc.3_Missense_Mutation_p.K42R|NF2_uc003agd.3_Intron|NF2_uc003agg.3_Missense_Mutation_p.K80R|NF2_uc003aga.3_Intron|NF2_uc003agh.3_Missense_Mutation_p.K80R|NF2_uc003agi.3_Intron|NF2_uc003agj.3_Missense_Mutation_p.K80R|NF2_uc003agk.3_Missense_Mutation_p.K42R	NM_000268	NP_000259
XPC	7508	broad.mit.edu	37	3	14220135	14220135	+	5'UTR	SNP	C	A	A			2011-2361:2012-1294-T	g.chr3:14220135C>A	uc011ave.1	-	1					XPC_uc011avf.1_5'UTR|XPC_uc011avg.1_5'UTR|LSM3_uc003byn.2_5'Flank	NM_004628	NP_004619
MYD88	4615	broad.mit.edu	37	3	38179998	38179998	+	5'UTR	SNP	A	G	G			2011-2361:2012-1294-T	g.chr3:38179998A>G	uc003chx.2	+	1					ACAA1_uc003cht.2_5'Flank|ACAA1_uc003chu.2_5'Flank|ACAA1_uc010hgy.2_5'Flank|ACAA1_uc010hgz.2_5'Flank|ACAA1_uc003chv.2_5'Flank|MYD88_uc011ayh.1_5'UTR|MYD88_uc011ayi.1_5'UTR|MYD88_uc011ayj.1_5'UTR|MYD88_uc011ayk.1_5'UTR|MYD88_uc011ayl.1_5'UTR	NM_002468	NP_002459
DPPA4	55211	broad.mit.edu	37	3	109050546	109050546	+	Intron	SNP	A	G	G			2011-2361:2012-1294-T	g.chr3:109050546A>G	uc003dxq.3	-						DPPA4_uc011bho.1_Intron|DPPA4_uc011bhp.1_Intron	NM_018189	NP_060659
MECOM	2122	broad.mit.edu	37	3	168830715	168830715	+	Intron	SNP	C	G	G			2011-2361:2012-1294-T	g.chr3:168830715C>G	uc003ffi.3	-						MECOM_uc010hwk.1_Intron|MECOM_uc003ffj.3_Intron|MECOM_uc011bpi.1_Intron|MECOM_uc003ffn.3_Intron|MECOM_uc003ffk.2_Intron|MECOM_uc003ffl.2_Intron|MECOM_uc011bpj.1_Intron|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Intron	NM_005241	NP_005232
SORCS2	57537	broad.mit.edu	37	4	7708146	7708146	+	Intron	SNP	G	A	A			2011-2361:2012-1294-T	g.chr4:7708146G>A	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
NKAPL	222698	broad.mit.edu	37	6	28227501	28227501	+	Missense_Mutation	SNP	C	T	T			2011-2361:2012-1294-T	g.chr6:28227501C>T	uc003nkt.2	+	1	404	c.352C>T	c.(352-354)CGG>TGG	p.R118W	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532
HLA-G	3135	broad.mit.edu	37	6	29909611	29909611	+	Intron	SNP	T	C	C			2011-2361:2012-1294-T	g.chr6:29909611T>C	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
VARS	7407	broad.mit.edu	37	6	31748302	31748302	+	Silent	SNP	G	A	A			2011-2361:2012-1294-T	g.chr6:31748302G>A	uc003nxe.2	-	25	3264	c.2841C>T	c.(2839-2841)CGC>CGT	p.R947R	VARS_uc003nxf.1_5'Flank	NM_006295	NP_006286
EIF2AK1	27102	broad.mit.edu	37	7	6084310	6084310	+	Intron	SNP	G	T	T	rs511969	by1000genomes	2011-2361:2012-1294-T	g.chr7:6084310G>T	uc003spp.2	-						EIF2AK1_uc003spq.2_Intron|EIF2AK1_uc011jwm.1_Intron|EIF2AK1_uc003spr.1_Intron	NM_014413	NP_055228
ADAM18	8749	broad.mit.edu	37	8	39494774	39494774	+	Intron	SNP	C	G	G			2011-2361:2012-1294-T	g.chr8:39494774C>G	uc003xni.2	+						ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Intron	NM_014237	NP_055052
CSMD3	114788	broad.mit.edu	37	8	113649221	113649221	+	Silent	SNP	T	C	C			2011-2361:2012-1294-T	g.chr8:113649221T>C	uc003ynu.2	-	22	3699	c.3540A>G	c.(3538-3540)GAA>GAG	p.E1180E	CSMD3_uc003yns.2_Silent_p.E452E|CSMD3_uc003ynt.2_Silent_p.E1140E|CSMD3_uc011lhx.1_Silent_p.E1076E	NM_198123	NP_937756
ZFP41	286128	broad.mit.edu	37	8	144342202	144342202	+	3'UTR	SNP	G	C	C			2011-2361:2012-1294-T	g.chr8:144342202G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
ITIH5	80760	broad.mit.edu	37	10	7671265	7671265	+	Intron	SNP	T	C	C			2011-2362:2012-363-T	g.chr10:7671265T>C	uc001ijq.2	-						ITIH5_uc001ijr.1_Intron	NM_030569	NP_085046
BRSK2	9024	broad.mit.edu	37	11	1415151	1415151	+	Intron	SNP	A	C	C			2011-2362:2012-363-T	g.chr11:1415151A>C	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
RIMBP2	23504	broad.mit.edu	37	12	131024585	131024585	+	Intron	SNP	C	G	G			2011-2362:2012-363-T	g.chr12:131024585C>G	uc001uim.2	-								
MAPK8IP3	23162	broad.mit.edu	37	16	1789139	1789139	+	Intron	SNP	G	A	A			2011-2362:2012-363-T	g.chr16:1789139G>A	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
MAPK8IP3	23162	broad.mit.edu	37	16	1789189	1789189	+	Intron	SNP	G	A	A			2011-2362:2012-363-T	g.chr16:1789189G>A	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
NUBP1	4682	broad.mit.edu	37	16	10858622	10858622	+	Intron	SNP	G	A	A	rs2719650		2011-2362:2012-363-T	g.chr16:10858622G>A	uc002daa.1	+						FAM18A_uc010uyr.1_Intron|FAM18A_uc010uys.1_Intron|FAM18A_uc010uyt.1_Intron|FAM18A_uc010bun.2_Intron|FAM18A_uc010uyu.1_Intron|FAM18A_uc002dad.3_Intron|NUBP1_uc002dab.1_Intron	NM_002484	NP_002475
ANKRD11	29123	broad.mit.edu	37	16	89372298	89372298	+	Intron	SNP	G	A	A	rs76289802	by1000genomes	2011-2362:2012-363-T	g.chr16:89372298G>A	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_Intron|ANKRD11_uc002fnf.1_Intron	NM_013275	NP_037407
ABR	29	broad.mit.edu	37	17	1022527	1022527	+	Intron	SNP	C	A	A	rs71935691		2011-2362:2012-363-T	g.chr17:1022527C>A	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
HCN2	610	broad.mit.edu	37	19	602354	602354	+	Intron	SNP	T	C	C	rs77265994		2011-2362:2012-363-T	g.chr19:602354T>C	uc002lpe.2	+							NM_001194	NP_001185
MED16	10025	broad.mit.edu	37	19	877894	877894	+	Intron	SNP	C	T	T	rs60839977		2011-2362:2012-363-T	g.chr19:877894C>T	uc002lqd.1	-						MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Intron|MED16_uc002lqf.2_Intron|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Intron|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472
PEG3	5178	broad.mit.edu	37	19	57325584	57325584	+	Missense_Mutation	SNP	G	T	T			2011-2362:2012-363-T	g.chr19:57325584G>T	uc002qnu.2	-	7	4577	c.4226C>A	c.(4225-4227)GCT>GAT	p.A1409D	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.A1380D|PEG3_uc002qnv.2_Missense_Mutation_p.A1409D|PEG3_uc002qnw.2_Missense_Mutation_p.A1285D|PEG3_uc002qnx.2_Missense_Mutation_p.A1283D|PEG3_uc010etr.2_Missense_Mutation_p.A1409D	NM_001146186	NP_001139658
INPP4A	3631	broad.mit.edu	37	2	99181196	99181196	+	Missense_Mutation	SNP	G	T	T			2011-2362:2012-363-T	g.chr2:99181196G>T	uc002syy.2	+	20	2530	c.2137G>T	c.(2137-2139)GCC>TCC	p.A713S	INPP4A_uc010yvj.1_Missense_Mutation_p.A674S|INPP4A_uc010yvk.1_Missense_Mutation_p.A674S|INPP4A_uc002syx.2_Missense_Mutation_p.A708S|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696
TTN	7273	broad.mit.edu	37	2	179664219	179664219	+	Silent	SNP	C	T	T			2011-2362:2012-363-T	g.chr2:179664219C>T	uc002und.2	-	6	1134	c.909G>A	c.(907-909)CCG>CCA	p.P303P	TTN_uc010zfg.1_Silent_p.P303P|TTN_uc010zfh.1_Silent_p.P303P|TTN_uc010zfi.1_Silent_p.P303P|TTN_uc010zfj.1_Silent_p.P303P|TTN_uc002unb.2_Silent_p.P303P		
FANCD2	2177	broad.mit.edu	37	3	10108862	10108862	+	Intron	SNP	G	A	A	rs112179204		2011-2362:2012-363-T	g.chr3:10108862G>A	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron	NM_033084	NP_149075
SI	6476	broad.mit.edu	37	3	164755642	164755642	+	Intron	SNP	G	T	T			2011-2362:2012-363-T	g.chr3:164755642G>T	uc003fei.2	-							NM_001041	NP_001032
NRG2	9542	broad.mit.edu	37	5	139422644	139422644	+	Missense_Mutation	SNP	A	C	C			2011-2362:2012-363-T	g.chr5:139422644A>C	uc003lex.1	-	1	236	c.11T>G	c.(10-12)GTT>GGT	p.V4G	NRG2_uc003lev.1_Missense_Mutation_p.V4G|NRG2_uc003lew.1_Missense_Mutation_p.V4G|NRG2_uc003ley.1_Missense_Mutation_p.V4G	NM_004883	NP_004874
PCDHA8	56140	broad.mit.edu	37	5	140221967	140221967	+	Missense_Mutation	SNP	C	T	T			2011-2362:2012-363-T	g.chr5:140221967C>T	uc003lhs.2	+	1	1061	c.1061C>T	c.(1060-1062)TCC>TTC	p.S354F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.S354F	NM_018911	NP_061734
TAP2	6891	broad.mit.edu	37	6	32802939	32802939	+	Missense_Mutation	SNP	G	A	A	rs140532996	byFrequency	2011-2362:2012-363-T	g.chr6:32802939G>A	uc003occ.2	-	4	968	c.937C>T	c.(937-939)CGC>TGC	p.R313C	TAP2_uc011dqf.1_Missense_Mutation_p.R313C|TAP2_uc003ocb.1_Missense_Mutation_p.R313C|TAP2_uc003ocd.2_Missense_Mutation_p.R313C	NM_018833	NP_061313
HBS1L	10767	broad.mit.edu	37	6	135358567	135358567	+	Intron	SNP	T	G	G	rs7742542	by1000genomes	2011-2362:2012-363-T	g.chr6:135358567T>G	uc003qez.2	-						HBS1L_uc011ecy.1_Intron|HBS1L_uc011ecz.1_Intron|HBS1L_uc011eda.1_Intron|HBS1L_uc003qfa.2_Missense_Mutation_p.E343A	NM_006620	NP_006611
SYNE1	23345	broad.mit.edu	37	6	152630946	152630946	+	Intron	SNP	C	T	T	rs12662994	by1000genomes	2011-2362:2012-363-T	g.chr6:152630946C>T	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
ADAP1	11033	broad.mit.edu	37	7	982813	982813	+	Intron	SNP	T	G	G			2011-2362:2012-363-T	g.chr7:982813T>G	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ERICH1	157697	broad.mit.edu	37	8	580672	580672	+	Intron	SNP	T	A	A			2011-2362:2012-363-T	g.chr8:580672T>A	uc011kwh.1	-						ERICH1_uc003wpe.1_Intron	NM_207332	NP_997215
CSMD3	114788	broad.mit.edu	37	8	114186000	114186000	+	Silent	SNP	G	T	T			2011-2362:2012-363-T	g.chr8:114186000G>T	uc003ynu.2	-	4	819	c.660C>A	c.(658-660)GCC>GCA	p.A220A	CSMD3_uc003ynt.2_Silent_p.A180A|CSMD3_uc011lhx.1_Silent_p.A220A|CSMD3_uc010mcx.1_Silent_p.A220A	NM_198123	NP_937756
CSF2RA	1438	broad.mit.edu	37	X	1412738	1412738	+	Intron	SNP	G	A	A			2011-2362:2012-363-T	g.chrX:1412738G>A	uc010nct.2	+						CSF2RA_uc011mhb.1_Intron|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Intron|CSF2RA_uc004cpo.2_Intron|CSF2RA_uc010ncu.2_Intron|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_Intron|CSF2RA_uc004cpr.2_Intron	NM_001161529	NP_001155001
CROCC	9696	broad.mit.edu	37	1	17185619	17185619	+	Intron	SNP	T	G	G			2011-2366:2012-1295-T	g.chr1:17185619T>G	uc009voy.1	+								
COL11A1	1301	broad.mit.edu	37	1	103348841	103348841	+	Missense_Mutation	SNP	C	G	G			2011-2366:2012-1295-T	g.chr1:103348841C>G	uc001dul.2	-	64	5203	c.4885G>C	c.(4885-4887)GGT>CGT	p.G1629R	COL11A1_uc001duk.2_Missense_Mutation_p.G825R|COL11A1_uc001dum.2_Missense_Mutation_p.G1641R|COL11A1_uc001dun.2_Missense_Mutation_p.G1590R|COL11A1_uc009weh.2_Missense_Mutation_p.G1513R	NM_001854	NP_001845
SPAG17	200162	broad.mit.edu	37	1	118579490	118579490	+	Missense_Mutation	SNP	C	A	A			2011-2366:2012-1295-T	g.chr1:118579490C>A	uc001ehk.2	-	24	3404	c.3336G>T	c.(3334-3336)AAG>AAT	p.K1112N		NM_206996	NP_996879
FLG	2312	broad.mit.edu	37	1	152286590	152286590	+	Missense_Mutation	SNP	C	G	G			2011-2366:2012-1295-T	g.chr1:152286590C>G	uc001ezu.1	-	3	808	c.772G>C	c.(772-774)GAA>CAA	p.E258Q	uc001ezv.2_Intron	NM_002016	NP_002007
MAP3K8	1326	broad.mit.edu	37	10	30726200	30726200	+	5'UTR	SNP	G	A	A			2011-2366:2012-1295-T	g.chr10:30726200G>A	uc001ivi.1	+	2					MAP3K8_uc009xlf.1_Intron|MAP3K8_uc001ivj.1_5'Flank	NM_005204	NP_005195
PCDH15	65217	broad.mit.edu	37	10	55566578	55566578	+	Missense_Mutation	SNP	C	T	T			2011-2366:2012-1295-T	g.chr10:55566578C>T	uc010qhq.1	-	36	5205	c.4810G>A	c.(4810-4812)GAA>AAA	p.E1604K	PCDH15_uc010qhr.1_Missense_Mutation_p.E1599K	NM_001142771	NP_001136243
GRK5	2869	broad.mit.edu	37	10	121187025	121187025	+	Intron	SNP	C	T	T			2011-2366:2012-1295-T	g.chr10:121187025C>T	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
PHRF1	57661	broad.mit.edu	37	11	585486	585486	+	Intron	SNP	C	A	A			2011-2366:2012-1295-T	g.chr11:585486C>A	uc001lqe.2	+						PHRF1_uc010qwc.1_Intron|PHRF1_uc010qwd.1_Intron|PHRF1_uc010qwe.1_Intron	NM_020901	NP_065952
OR4C15	81309	broad.mit.edu	37	11	55322205	55322205	+	Silent	SNP	G	A	A			2011-2366:2012-1295-T	g.chr11:55322205G>A	uc010rig.1	+	1	423	c.423G>A	c.(421-423)GTG>GTA	p.V141V		NM_001001920	NP_001001920
INCENP	3619	broad.mit.edu	37	11	61914283	61914283	+	Missense_Mutation	SNP	C	G	G			2011-2366:2012-1295-T	g.chr11:61914283C>G	uc001nsw.1	+	15	2315	c.2113C>G	c.(2113-2115)CAG>GAG	p.Q705E	INCENP_uc009ynw.1_Missense_Mutation_p.Q709E|INCENP_uc001nsx.1_Missense_Mutation_p.Q701E|INCENP_uc001nsy.1_Missense_Mutation_p.Q119E	NM_001040694	NP_001035784
AHNAK	79026	broad.mit.edu	37	11	62295814	62295814	+	Silent	SNP	G	A	A			2011-2366:2012-1295-T	g.chr11:62295814G>A	uc001ntl.2	-	5	6375	c.6075C>T	c.(6073-6075)ATC>ATT	p.I2025I	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
KDM5A	5927	broad.mit.edu	37	12	438039	438039	+	Missense_Mutation	SNP	C	T	T			2011-2366:2012-1295-T	g.chr12:438039C>T	uc001qif.1	-	14	2293	c.1930G>A	c.(1930-1932)GAA>AAA	p.E644K	KDM5A_uc001qie.1_Missense_Mutation_p.E644K|KDM5A_uc010sdn.1_Missense_Mutation_p.E603K|KDM5A_uc010sdo.1_Missense_Mutation_p.E263K	NM_001042603	NP_001036068
EPS8	2059	broad.mit.edu	37	12	15803736	15803736	+	Intron	SNP	C	A	A			2011-2366:2012-1295-T	g.chr12:15803736C>A	uc009zif.2	-						EPS8_uc001rdb.2_Intron|EPS8_uc009zig.2_Intron|EPS8_uc010shv.1_Intron	NM_004447	NP_004438
PDE3A	5139	broad.mit.edu	37	12	20790066	20790066	+	Silent	SNP	C	T	T			2011-2366:2012-1295-T	g.chr12:20790066C>T	uc001reh.1	+	9	2056	c.2034C>T	c.(2032-2034)GTC>GTT	p.V678V		NM_000921	NP_000912
MLL2	8085	broad.mit.edu	37	12	49422750	49422750	+	Intron	SNP	G	A	A			2011-2366:2012-1295-T	g.chr12:49422750G>A	uc001rta.3	-							NM_003482	NP_003473
NACA	4666	broad.mit.edu	37	12	57119154	57119154	+	5'Flank	SNP	G	A	A			2011-2366:2012-1295-T	g.chr12:57119154G>A	uc001slz.2	-						NACA_uc001sly.2_5'Flank|NACA_uc009zoy.1_5'UTR|NACA_uc001smc.2_5'UTR|NACA_uc001sma.2_5'UTR|NACA_uc001smb.2_5'UTR|NACA_uc010squ.1_RNA	NM_001113201	NP_001106672
RB1	5925	broad.mit.edu	37	13	49027168	49027168	+	Nonsense_Mutation	SNP	C	T	T	rs121913305		2011-2366:2012-1295-T	g.chr13:49027168C>T	uc001vcb.2	+	18	1901	c.1735C>T	c.(1735-1737)CGA>TGA	p.R579*		NM_000321	NP_000312
GPC5	2262	broad.mit.edu	37	13	93518546	93518546	+	Missense_Mutation	SNP	G	A	A			2011-2366:2012-1295-T	g.chr13:93518546G>A	uc010tif.1	+	8	1939	c.1573G>A	c.(1573-1575)GAT>AAT	p.D525N		NM_004466	NP_004457
MYH1	4619	broad.mit.edu	37	17	10411121	10411121	+	Intron	SNP	T	G	G			2011-2366:2012-1295-T	g.chr17:10411121T>G	uc002gmo.2	-						uc002gml.1_Intron	NM_005963	NP_005954
NF1	4763	broad.mit.edu	37	17	29580071	29580071	+	Intron	SNP	C	G	G			2011-2366:2012-1295-T	g.chr17:29580071C>G	uc002hgg.2	+						NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron	NM_001042492	NP_001035957
BRCA1	672	broad.mit.edu	37	17	41197556	41197556	+	3'UTR	SNP	C	T	T			2011-2366:2012-1295-T	g.chr17:41197556C>T	uc002icq.2	-	23					BRCA1_uc010whp.1_3'UTR|BRCA1_uc010whl.1_3'UTR|BRCA1_uc010whm.1_3'UTR|BRCA1_uc002icp.3_3'UTR|BRCA1_uc002icu.2_3'UTR|BRCA1_uc010cyx.2_3'UTR|BRCA1_uc002ict.2_3'UTR|BRCA1_uc010whn.1_3'UTR|BRCA1_uc010who.1_3'UTR	NM_007294	NP_009225
BRIP1	83990	broad.mit.edu	37	17	59876352	59876352	+	Intron	SNP	C	T	T	rs2191248	by1000genomes	2011-2366:2012-1295-T	g.chr17:59876352C>T	uc002izk.1	-							NM_032043	NP_114432
NOTCH3	4854	broad.mit.edu	37	19	15292088	15292088	+	Intron	SNP	G	C	C	rs7257550	by1000genomes	2011-2366:2012-1295-T	g.chr19:15292088G>C	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
NLRP4	147945	broad.mit.edu	37	19	56370478	56370478	+	Silent	SNP	C	G	G	rs150474101		2011-2366:2012-1295-T	g.chr19:56370478C>G	uc002qmd.3	+	3	2141	c.1719C>G	c.(1717-1719)CTC>CTG	p.L573L	NLRP4_uc002qmf.2_Silent_p.L498L|NLRP4_uc010etf.2_Silent_p.L404L	NM_134444	NP_604393
LRP1B	53353	broad.mit.edu	37	2	141116274	141116274	+	Intron	SNP	G	T	T			2011-2366:2012-1295-T	g.chr2:141116274G>T	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141264183	141264183	+	Intron	SNP	A	C	C			2011-2366:2012-1295-T	g.chr2:141264183A>C	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141474438	141474438	+	Intron	SNP	C	G	G			2011-2366:2012-1295-T	g.chr2:141474438C>G	uc002tvj.1	-							NM_018557	NP_061027
ZEB2	9839	broad.mit.edu	37	2	145162612	145162612	+	Intron	SNP	G	C	C			2011-2366:2012-1295-T	g.chr2:145162612G>C	uc002tvu.2	-						ZEB2_uc002tvv.2_Intron|ZEB2_uc010zbm.1_Intron|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Intron	NM_014795	NP_055610
TTN	7273	broad.mit.edu	37	2	179395624	179395624	+	Missense_Mutation	SNP	G	A	A			2011-2366:2012-1295-T	g.chr2:179395624G>A	uc010zfg.1	-	307	98238	c.98014C>T	c.(98014-98016)CGG>TGG	p.R32672W	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R26367W|TTN_uc010zfi.1_Missense_Mutation_p.R26300W|TTN_uc010zfj.1_Missense_Mutation_p.R26175W|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179446869	179446869	+	Nonsense_Mutation	SNP	C	T	T			2011-2366:2012-1295-T	g.chr2:179446869C>T	uc010zfg.1	-	264	58747	c.58523G>A	c.(58522-58524)TGG>TAG	p.W19508*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W13203*|TTN_uc010zfi.1_Nonsense_Mutation_p.W13136*|TTN_uc010zfj.1_Nonsense_Mutation_p.W13011*	NM_133378	NP_596869
CASP8	841	broad.mit.edu	37	2	202151163	202151163	+	Intron	SNP	A	G	G	rs3769818	by1000genomes	2011-2366:2012-1295-T	g.chr2:202151163A>G	uc002uxr.1	+						CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc002uxw.1_Intron|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Intron	NM_033355	NP_203519
C20orf26	26074	broad.mit.edu	37	20	20337725	20337725	+	Intron	SNP	A	G	G			2011-2366:2012-1295-T	g.chr20:20337725A>G	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
RIPK4	54101	broad.mit.edu	37	21	43161767	43161767	+	Missense_Mutation	SNP	G	A	A			2011-2366:2012-1295-T	g.chr21:43161767G>A	uc002yzn.1	-	8	1634	c.1586C>T	c.(1585-1587)TCG>TTG	p.S529L		NM_020639	NP_065690
EP300	2033	broad.mit.edu	37	22	41488467	41488467	+	5'Flank	SNP	G	A	A			2011-2366:2012-1295-T	g.chr22:41488467G>A	uc003azl.3	+						MIR1281_hsa-mir-1281|MI0006428_5'Flank	NM_001429	NP_001420
CNTN6	27255	broad.mit.edu	37	3	1371544	1371544	+	Missense_Mutation	SNP	G	A	A			2011-2366:2012-1295-T	g.chr3:1371544G>A	uc003boz.2	+	11	1556	c.1289G>A	c.(1288-1290)GGA>GAA	p.G430E	CNTN6_uc011asj.1_Missense_Mutation_p.G358E|CNTN6_uc003bpa.2_Missense_Mutation_p.G430E	NM_014461	NP_055276
SLITRK3	22865	broad.mit.edu	37	3	164906966	164906966	+	Missense_Mutation	SNP	C	G	G			2011-2366:2012-1295-T	g.chr3:164906966C>G	uc003fej.3	-	2	2097	c.1653G>C	c.(1651-1653)TTG>TTC	p.L551F	SLITRK3_uc003fek.2_Missense_Mutation_p.L551F	NM_014926	NP_055741
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2011-2366:2012-1295-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
DGKG	1608	broad.mit.edu	37	3	186038371	186038371	+	5'UTR	SNP	C	T	T			2011-2366:2012-1295-T	g.chr3:186038371C>T	uc003fqa.2	-	2					DGKG_uc003fqb.2_5'UTR|DGKG_uc003fqc.2_5'UTR|DGKG_uc011brx.1_5'UTR	NM_001346	NP_001337
FGFR3	2261	broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	G	G	rs121913483		2011-2366:2012-1295-T	g.chr4:1803568C>G	uc003gdr.3	+	7	1002	c.746C>G	c.(745-747)TCC>TGC	p.S249C	FGFR3_uc003gdu.2_Missense_Mutation_p.S249C|FGFR3_uc003gds.3_Missense_Mutation_p.S249C|FGFR3_uc003gdq.3_Missense_Mutation_p.S249C|FGFR3_uc010icb.1_Missense_Mutation_p.S91C|FGFR3_uc003gdt.1_Missense_Mutation_p.S91C	NM_000142	NP_000133
FGFR3	2261	broad.mit.edu	37	4	1806383	1806383	+	Intron	SNP	C	T	T			2011-2366:2012-1295-T	g.chr4:1806383C>T	uc003gdr.3	+						FGFR3_uc003gdu.2_Intron|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Intron	NM_000142	NP_000133
FGFR3	2261	broad.mit.edu	37	4	1808058	1808058	+	Intron	SNP	C	G	G			2011-2366:2012-1295-T	g.chr4:1808058C>G	uc003gdr.3	+						FGFR3_uc003gdu.2_Intron|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Intron	NM_000142	NP_000133
DSPP	1834	broad.mit.edu	37	4	88536368	88536368	+	Missense_Mutation	SNP	G	A	A			2011-2366:2012-1295-T	g.chr4:88536368G>A	uc003hqu.2	+	5	2674	c.2554G>A	c.(2554-2556)GAT>AAT	p.D852N		NM_014208	NP_055023
FAT1	2195	broad.mit.edu	37	4	187540515	187540515	+	Missense_Mutation	SNP	C	T	T			2011-2366:2012-1295-T	g.chr4:187540515C>T	uc003izf.2	-	10	7413	c.7225G>A	c.(7225-7227)GTG>ATG	p.V2409M		NM_005245	NP_005236
CDH10	1008	broad.mit.edu	37	5	24645166	24645166	+	5'Flank	SNP	C	G	G			2011-2366:2012-1295-T	g.chr5:24645166C>G	uc003jgr.1	-						CDH10_uc011cnu.1_5'Flank	NM_006727	NP_006718
ADAMTS12	81792	broad.mit.edu	37	5	33631048	33631048	+	Intron	SNP	C	A	A			2011-2366:2012-1295-T	g.chr5:33631048C>A	uc003jia.1	-						ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217
HLA-A	3105	broad.mit.edu	37	6	29911837	29911837	+	Intron	SNP	G	A	A	rs114615513	by1000genomes	2011-2366:2012-1295-T	g.chr6:29911837G>A	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Intron|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_Intron	NM_002116	NP_002107
SYNE1	23345	broad.mit.edu	37	6	152489558	152489558	+	Intron	SNP	G	C	C			2011-2366:2012-1295-T	g.chr6:152489558G>C	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
PMS2	5395	broad.mit.edu	37	7	6045673	6045673	+	Intron	SNP	C	T	T			2011-2366:2012-1295-T	g.chr7:6045673C>T	uc003spl.2	-						PMS2_uc003spj.2_5'Flank|PMS2_uc003spk.2_Intron|PMS2_uc011jwl.1_Intron|PMS2_uc010ktg.2_Intron|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Intron	NM_000535	NP_000526
THSD7A	221981	broad.mit.edu	37	7	11581070	11581070	+	Missense_Mutation	SNP	C	T	T			2011-2366:2012-1295-T	g.chr7:11581070C>T	uc003ssf.3	-	6	2050	c.1798G>A	c.(1798-1800)GAG>AAG	p.E600K		NM_015204	NP_056019
VPS41	27072	broad.mit.edu	37	7	38791660	38791660	+	Intron	SNP	C	T	T			2011-2366:2012-1295-T	g.chr7:38791660C>T	uc003tgy.2	-						VPS41_uc003tgz.2_Intron|VPS41_uc010kxn.2_Intron	NM_014396	NP_055211
WRN	7486	broad.mit.edu	37	8	30949417	30949417	+	Intron	SNP	G	C	C			2011-2366:2012-1295-T	g.chr8:30949417G>C	uc003xio.3	+						WRN_uc010lvk.2_Intron	NM_000553	NP_000544
ZFHX4	79776	broad.mit.edu	37	8	77754950	77754950	+	Missense_Mutation	SNP	G	C	C			2011-2366:2012-1295-T	g.chr8:77754950G>C	uc003yav.2	+	6	3736	c.3349G>C	c.(3349-3351)GAA>CAA	p.E1117Q	ZFHX4_uc003yau.1_Missense_Mutation_p.E1152Q|ZFHX4_uc003yaw.1_Missense_Mutation_p.E1117Q	NM_024721	NP_078997
NECAB1	64168	broad.mit.edu	37	8	91803968	91803968	+	5'UTR	SNP	G	C	C			2011-2366:2012-1295-T	g.chr8:91803968G>C	uc011lgg.1	+	1					TMEM64_uc003yeo.2_5'Flank	NM_022351	NP_071746
CSMD3	114788	broad.mit.edu	37	8	113347467	113347467	+	Intron	SNP	C	T	T			2011-2366:2012-1295-T	g.chr8:113347467C>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc003ynw.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113650820	113650820	+	Intron	SNP	C	T	T			2011-2366:2012-1295-T	g.chr8:113650820C>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
ENPP2	5168	broad.mit.edu	37	8	120613725	120613725	+	Intron	SNP	G	A	A			2011-2366:2012-1295-T	g.chr8:120613725G>A	uc003yot.1	-						ENPP2_uc003yos.1_Intron|ENPP2_uc010mdd.1_Intron	NM_001040092	NP_001035181
HUWE1	10075	broad.mit.edu	37	X	53613780	53613780	+	Silent	SNP	G	C	C			2011-2366:2012-1295-T	g.chrX:53613780G>C	uc004dsp.2	-	38	5106	c.4704C>G	c.(4702-4704)CTC>CTG	p.L1568L	HUWE1_uc004dsn.2_Silent_p.L393L	NM_031407	NP_113584
HEPH	9843	broad.mit.edu	37	X	65390433	65390433	+	Silent	SNP	C	T	T			2011-2366:2012-1295-T	g.chrX:65390433C>T	uc011moz.1	+	2	90	c.30C>T	c.(28-30)CTC>CTT	p.L10L	HEPH_uc004dwn.2_Silent_p.L10L|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Silent_p.L10L|HEPH_uc011mpa.1_Silent_p.L10L	NM_138737	NP_620074
ABCA4	24	broad.mit.edu	37	1	94586670	94586670	+	5'UTR	SNP	C	T	T			2011-2367:2012-1296-T	g.chr1:94586670C>T	uc001dqh.2	-	1					ABCA4_uc010otn.1_5'UTR	NM_000350	NP_000341
PDE4DIP	9659	broad.mit.edu	37	1	144873949	144873949	+	Nonsense_Mutation	SNP	C	A	A	rs139225578	byFrequency	2011-2367:2012-1296-T	g.chr1:144873949C>A	uc001elw.3	-	31	5299	c.5008G>T	c.(5008-5010)GAA>TAA	p.E1670*	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Nonsense_Mutation_p.E1626*|PDE4DIP_uc001elv.3_Nonsense_Mutation_p.E677*	NM_014644	NP_055459
ASH1L	55870	broad.mit.edu	37	1	155448715	155448715	+	Missense_Mutation	SNP	G	C	C			2011-2367:2012-1296-T	g.chr1:155448715G>C	uc009wqq.2	-	3	4426	c.3946C>G	c.(3946-3948)CTG>GTG	p.L1316V	ASH1L_uc001fkt.2_Missense_Mutation_p.L1316V|ASH1L_uc009wqr.1_Missense_Mutation_p.L1316V	NM_018489	NP_060959
USH2A	7399	broad.mit.edu	37	1	215848453	215848453	+	Missense_Mutation	SNP	G	C	C			2011-2367:2012-1296-T	g.chr1:215848453G>C	uc001hku.1	-	63	13187	c.12800C>G	c.(12799-12801)TCT>TGT	p.S4267C		NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216390624	216390624	+	Intron	SNP	T	C	C			2011-2367:2012-1296-T	g.chr1:216390624T>C	uc001hku.1	-						USH2A_uc001hkv.2_Intron	NM_206933	NP_996816
MLL2	8085	broad.mit.edu	37	12	49435312	49435312	+	Missense_Mutation	SNP	C	G	G			2011-2367:2012-1296-T	g.chr12:49435312C>G	uc001rta.3	-	31	6241	c.6241G>C	c.(6241-6243)GAG>CAG	p.E2081Q		NM_003482	NP_003473
MLL2	8085	broad.mit.edu	37	12	49446723	49446723	+	Missense_Mutation	SNP	C	G	G			2011-2367:2012-1296-T	g.chr12:49446723C>G	uc001rta.3	-	8	1087	c.1087G>C	c.(1087-1089)GAG>CAG	p.E363Q		NM_003482	NP_003473
LRFN5	145581	broad.mit.edu	37	14	42356123	42356123	+	Nonsense_Mutation	SNP	C	T	T			2011-2367:2012-1296-T	g.chr14:42356123C>T	uc001wvm.2	+	3	1493	c.295C>T	c.(295-297)CGA>TGA	p.R99*	LRFN5_uc010ana.2_Nonsense_Mutation_p.R99*	NM_152447	NP_689660
DICER1	23405	broad.mit.edu	37	14	95573948	95573948	+	Missense_Mutation	SNP	G	T	T			2011-2367:2012-1296-T	g.chr14:95573948G>T	uc001ydw.2	-	18	2983	c.2801C>A	c.(2800-2802)CCA>CAA	p.P934Q	DICER1_uc010avh.1_5'Flank|DICER1_uc001ydv.2_Missense_Mutation_p.P924Q|DICER1_uc001ydx.2_Missense_Mutation_p.P934Q	NM_030621	NP_085124
TP53	7157	broad.mit.edu	37	17	7577141	7577141	+	Missense_Mutation	SNP	C	T	T			2011-2367:2012-1296-T	g.chr17:7577141C>T	uc002gim.2	-	8	991	c.797G>A	c.(796-798)GGA>GAA	p.G266E	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.G266E|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.G134E|TP53_uc010cng.1_Missense_Mutation_p.G134E|TP53_uc002gii.1_Missense_Mutation_p.G134E|TP53_uc010cnh.1_Missense_Mutation_p.G266E|TP53_uc010cni.1_Missense_Mutation_p.G266E|TP53_uc002gij.2_Missense_Mutation_p.G266E	NM_001126112	NP_001119584
DOK6	220164	broad.mit.edu	37	18	67406278	67406278	+	Missense_Mutation	SNP	C	T	T	rs150709681		2011-2367:2012-1296-T	g.chr18:67406278C>T	uc002lkl.2	+	6	867	c.677C>T	c.(676-678)GCG>GTG	p.A226V		NM_152721	NP_689934
FZR1	51343	broad.mit.edu	37	19	3529202	3529202	+	Intron	SNP	G	A	A			2011-2367:2012-1296-T	g.chr19:3529202G>A	uc010dtk.2	+						FZR1_uc002lxt.2_Intron|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670
ZNF331	55422	broad.mit.edu	37	19	54042441	54042441	+	Intron	SNP	T	G	G			2011-2367:2012-1296-T	g.chr19:54042441T>G	uc002qbx.1	+						ZNF331_uc002qby.1_Intron|ZNF331_uc002qbz.1_Intron|ZNF331_uc002qca.1_Intron|ZNF331_uc010eqr.1_Intron|ZNF331_uc002qcb.1_Intron	NM_018555	NP_061025
RMND5A	64795	broad.mit.edu	37	2	87634113	87634113	+	Intron	SNP	C	A	A			2011-2367:2012-1296-T	g.chr2:87634113C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641985	87641985	+	Intron	SNP	C	T	T			2011-2367:2012-1296-T	g.chr2:87641985C>T	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141707766	141707766	+	Intron	SNP	T	A	A			2011-2367:2012-1296-T	g.chr2:141707766T>A	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
NFE2L2	4780	broad.mit.edu	37	2	178130292	178130292	+	5'Flank	SNP	C	G	G			2011-2367:2012-1296-T	g.chr2:178130292C>G	uc002ulh.3	-						NFE2L2_uc002ulg.3_5'Flank|NFE2L2_uc010zfa.1_5'Flank|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_5'Flank|NFE2L2_uc010frb.2_5'Flank	NM_006164	NP_006155
CASP8	841	broad.mit.edu	37	2	202105661	202105661	+	Intron	SNP	A	G	G			2011-2367:2012-1296-T	g.chr2:202105661A>G	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxn.2_RNA	NM_033355	NP_203519
MAP2	4133	broad.mit.edu	37	2	210557558	210557558	+	Missense_Mutation	SNP	C	G	G			2011-2367:2012-1296-T	g.chr2:210557558C>G	uc002vde.1	+	7	912	c.664C>G	c.(664-666)CCC>GCC	p.P222A	MAP2_uc002vdc.1_Missense_Mutation_p.P222A|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.P218A	NM_002374	NP_002365
PAX3	5077	broad.mit.edu	37	2	223160203	223160203	+	Intron	SNP	C	A	A			2011-2367:2012-1296-T	g.chr2:223160203C>A	uc010fwo.2	-						PAX3_uc002vmt.1_Intron|PAX3_uc002vmy.1_Intron|PAX3_uc002vmv.1_Intron|PAX3_uc002vmw.1_Intron|PAX3_uc002vmx.1_Intron|PAX3_uc002vmz.1_Intron|PAX3_uc002vna.1_Intron|CCDC140_uc002vnb.1_5'Flank	NM_181457	NP_852122
XRCC6	2547	broad.mit.edu	37	22	42052998	42052998	+	Silent	SNP	G	A	A	rs147467039	byFrequency	2011-2367:2012-1296-T	g.chr22:42052998G>A	uc003bao.1	+	10	1453	c.1383G>A	c.(1381-1383)AAG>AAA	p.K461K	XRCC6_uc003bap.1_Silent_p.K420K|XRCC6_uc011apc.1_Silent_p.K411K|XRCC6_uc003baq.1_Silent_p.K461K|XRCC6_uc003bar.1_Silent_p.K461K|XRCC6_uc003bas.1_Silent_p.K411K	NM_001469	NP_001460
SI	6476	broad.mit.edu	37	3	164760819	164760819	+	Intron	SNP	C	T	T	rs148598122	by1000genomes	2011-2367:2012-1296-T	g.chr3:164760819C>T	uc003fei.2	-							NM_001041	NP_001032
PCYT1A	5130	broad.mit.edu	37	3	195976967	195976967	+	Intron	SNP	T	A	A			2011-2367:2012-1296-T	g.chr3:195976967T>A	uc003fwg.2	-						PCYT1A_uc003fwh.2_Intron	NM_005017	NP_005008
ANKRD17	26057	broad.mit.edu	37	4	73951152	73951152	+	Missense_Mutation	SNP	T	C	C			2011-2367:2012-1296-T	g.chr4:73951152T>C	uc003hgp.2	-	30	7090	c.6973A>G	c.(6973-6975)ATG>GTG	p.M2325V	ANKRD17_uc003hgo.2_Missense_Mutation_p.M2212V|ANKRD17_uc003hgq.2_Missense_Mutation_p.M2074V|ANKRD17_uc003hgr.2_Missense_Mutation_p.M2324V	NM_032217	NP_115593
ANKRD17	26057	broad.mit.edu	37	4	74007906	74007906	+	Intron	SNP	G	C	C			2011-2367:2012-1296-T	g.chr4:74007906G>C	uc003hgp.2	-						ANKRD17_uc003hgo.2_Intron|ANKRD17_uc003hgq.2_Intron|ANKRD17_uc003hgr.2_Intron|ANKRD17_uc011cbd.1_Intron	NM_032217	NP_115593
CDH9	1007	broad.mit.edu	37	5	26890473	26890473	+	Intron	SNP	G	T	T			2011-2367:2012-1296-T	g.chr5:26890473G>T	uc003jgs.1	-						CDH9_uc011cnv.1_Intron	NM_016279	NP_057363
FAT2	2196	broad.mit.edu	37	5	150947518	150947518	+	Nonsense_Mutation	SNP	G	T	T			2011-2367:2012-1296-T	g.chr5:150947518G>T	uc003lue.3	-	1	988	c.975C>A	c.(973-975)TAC>TAA	p.Y325*	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Nonsense_Mutation_p.Y325*	NM_001447	NP_001438
CARD11	84433	broad.mit.edu	37	7	2979433	2979433	+	Missense_Mutation	SNP	C	G	G			2011-2367:2012-1296-T	g.chr7:2979433C>G	uc003smv.2	-	6	1218	c.814G>C	c.(814-816)GAG>CAG	p.E272Q		NM_032415	NP_115791
CARD11	84433	broad.mit.edu	37	7	2979563	2979563	+	Splice_Site	SNP	C	G	G			2011-2367:2012-1296-T	g.chr7:2979563C>G	uc003smv.2	-	6	1089	c.685_splice	c.e6-1	p.I229_splice		NM_032415	NP_115791
PTPRN2	5799	broad.mit.edu	37	7	158295535	158295535	+	Intron	SNP	G	A	A			2011-2367:2012-1296-T	g.chr7:158295535G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
WRN	7486	broad.mit.edu	37	8	30982481	30982481	+	Missense_Mutation	SNP	G	T	T			2011-2367:2012-1296-T	g.chr8:30982481G>T	uc003xio.3	+	23	3578	c.2790G>T	c.(2788-2790)ATG>ATT	p.M930I	WRN_uc010lvk.2_Missense_Mutation_p.M397I	NM_000553	NP_000544
NKAIN3	286183	broad.mit.edu	37	8	63776780	63776780	+	Intron	SNP	G	A	A			2011-2367:2012-1296-T	g.chr8:63776780G>A	uc010lyq.1	+							NM_173688	NP_775959
CSMD3	114788	broad.mit.edu	37	8	113323198	113323198	+	Intron	SNP	A	G	G			2011-2367:2012-1296-T	g.chr8:113323198A>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc003ynw.1_Missense_Mutation_p.Y343H	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113599294	113599294	+	Splice_Site	SNP	C	G	G			2011-2367:2012-1296-T	g.chr8:113599294C>G	uc003ynu.2	-	23	4044	c.3885_splice	c.e23+1	p.K1295_splice	CSMD3_uc003yns.2_Splice_Site_p.K567_splice|CSMD3_uc003ynt.2_Splice_Site_p.K1255_splice|CSMD3_uc011lhx.1_Splice_Site_p.K1191_splice	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113657468	113657468	+	Intron	SNP	A	G	G			2011-2367:2012-1296-T	g.chr8:113657468A>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113697895	113697895	+	Missense_Mutation	SNP	T	C	C			2011-2367:2012-1296-T	g.chr8:113697895T>C	uc003ynu.2	-	15	2381	c.2222A>G	c.(2221-2223)TAT>TGT	p.Y741C	CSMD3_uc003yns.2_Missense_Mutation_p.Y13C|CSMD3_uc003ynt.2_Missense_Mutation_p.Y701C|CSMD3_uc011lhx.1_Missense_Mutation_p.Y637C	NM_198123	NP_937756
HUWE1	10075	broad.mit.edu	37	X	53562379	53562379	+	Missense_Mutation	SNP	C	A	A			2011-2367:2012-1296-T	g.chrX:53562379C>A	uc004dsp.2	-	81	13017	c.12615G>T	c.(12613-12615)GAG>GAT	p.E4205D	HUWE1_uc004dsn.2_Missense_Mutation_p.E3013D	NM_031407	NP_113584
NBPF1	55672	broad.mit.edu	37	1	16907863	16907863	+	Intron	SNP	G	C	C			2011-2368:2012-1297-T	g.chr1:16907863G>C	uc009vos.1	-						NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
MACF1	23499	broad.mit.edu	37	1	39917959	39917959	+	Silent	SNP	C	T	T			2011-2368:2012-1297-T	g.chr1:39917959C>T	uc010oiu.1	+	51	16010	c.15879C>T	c.(15877-15879)CGC>CGT	p.R5293R	MACF1_uc010ois.1_Silent_p.R4791R	NM_033044	NP_149033
PDE4DIP	9659	broad.mit.edu	37	1	144995108	144995108	+	5'Flank	SNP	G	A	A			2011-2368:2012-1297-T	g.chr1:144995108G>A	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_5'Flank|PDE4DIP_uc001ell.1_5'Flank|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_5'Flank|PDE4DIP_uc001emd.1_5'Flank|PDE4DIP_uc001emg.1_5'Flank|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
FLG	2312	broad.mit.edu	37	1	152275898	152275898	+	Missense_Mutation	SNP	C	A	A			2011-2368:2012-1297-T	g.chr1:152275898C>A	uc001ezu.1	-	3	11500	c.11464G>T	c.(11464-11466)GGC>TGC	p.G3822C		NM_002016	NP_002007
SPTA1	6708	broad.mit.edu	37	1	158647558	158647558	+	Silent	SNP	G	T	T			2011-2368:2012-1297-T	g.chr1:158647558G>T	uc001fst.1	-	7	1078	c.879C>A	c.(877-879)GGC>GGA	p.G293G		NM_003126	NP_003117
FAM5B	57795	broad.mit.edu	37	1	177250595	177250595	+	Silent	SNP	C	G	G			2011-2368:2012-1297-T	g.chr1:177250595C>G	uc001glf.2	+	8	2595	c.2283C>G	c.(2281-2283)TCC>TCG	p.S761S	FAM5B_uc001glg.2_Silent_p.S656S	NM_021165	NP_066988
ABL2	27	broad.mit.edu	37	1	179077581	179077581	+	Missense_Mutation	SNP	G	C	C			2011-2368:2012-1297-T	g.chr1:179077581G>C	uc001gmj.3	-	12	3108	c.2821C>G	c.(2821-2823)CAC>GAC	p.H941D	ABL2_uc010pnf.1_Missense_Mutation_p.H838D|ABL2_uc010png.1_Missense_Mutation_p.H817D|ABL2_uc010pnh.1_Missense_Mutation_p.H920D|ABL2_uc001gmg.3_Missense_Mutation_p.H823D|ABL2_uc001gmi.3_Missense_Mutation_p.H926D|ABL2_uc001gmh.3_Missense_Mutation_p.H905D|ABL2_uc010pne.1_Missense_Mutation_p.H802D	NM_007314	NP_009298
CYP26A1	1592	broad.mit.edu	37	10	94836800	94836800	+	Missense_Mutation	SNP	G	T	T			2011-2368:2012-1297-T	g.chr10:94836800G>T	uc001kil.2	+	7	1278	c.1233G>T	c.(1231-1233)AAG>AAT	p.K411N	CYP26A1_uc001kik.1_Missense_Mutation_p.K342N|CYP26A1_uc001kim.1_Missense_Mutation_p.K309N	NM_000783	NP_000774
INPP5A	3632	broad.mit.edu	37	10	134537105	134537105	+	Intron	SNP	T	C	C			2011-2368:2012-1297-T	g.chr10:134537105T>C	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
AHNAK	79026	broad.mit.edu	37	11	62290270	62290270	+	Missense_Mutation	SNP	G	C	C			2011-2368:2012-1297-T	g.chr11:62290270G>C	uc001ntl.2	-	5	11919	c.11619C>G	c.(11617-11619)ATC>ATG	p.I3873M	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
GPR133	283383	broad.mit.edu	37	12	131613969	131613969	+	Intron	SNP	G	C	C			2011-2368:2012-1297-T	g.chr12:131613969G>C	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc009zyp.2_Intron	NM_198827	NP_942122
ABHD13	84945	broad.mit.edu	37	13	108881841	108881841	+	Missense_Mutation	SNP	G	C	C			2011-2368:2012-1297-T	g.chr13:108881841G>C	uc001vqq.2	+	2	540	c.275G>C	c.(274-276)AGA>ACA	p.R92T		NM_032859	NP_116248
TLN2	83660	broad.mit.edu	37	15	62944166	62944166	+	Intron	SNP	C	A	A			2011-2368:2012-1297-T	g.chr15:62944166C>A	uc002alb.3	+							NM_015059	NP_055874
SPG7	6687	broad.mit.edu	37	16	89602619	89602619	+	Intron	SNP	G	T	T	rs76069859		2011-2368:2012-1297-T	g.chr16:89602619G>T	uc002fnj.2	+						SPG7_uc002fni.2_Intron	NM_003119	NP_003110
RHBDL3	162494	broad.mit.edu	37	17	30603792	30603792	+	Intron	SNP	G	A	A			2011-2368:2012-1297-T	g.chr17:30603792G>A	uc002hhe.1	+						RHBDL3_uc010csw.1_Intron|RHBDL3_uc010csx.1_Intron|RHBDL3_uc010csy.1_Intron|RHBDL3_uc002hhf.1_Intron	NM_138328	NP_612201
APOB	338	broad.mit.edu	37	2	21260038	21260038	+	Silent	SNP	C	A	A			2011-2368:2012-1297-T	g.chr2:21260038C>A	uc002red.2	-	6	755	c.627G>T	c.(625-627)CTG>CTT	p.L209L		NM_000384	NP_000375
DYSF	8291	broad.mit.edu	37	2	71845384	71845384	+	Intron	SNP	G	A	A	rs147685237	by1000genomes	2011-2368:2012-1297-T	g.chr2:71845384G>A	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
LRP1B	53353	broad.mit.edu	37	2	141459428	141459428	+	Intron	SNP	G	A	A			2011-2368:2012-1297-T	g.chr2:141459428G>A	uc002tvj.1	-							NM_018557	NP_061027
NFE2L2	4780	broad.mit.edu	37	2	178097256	178097256	+	Missense_Mutation	SNP	C	A	A			2011-2368:2012-1297-T	g.chr2:178097256C>A	uc002ulh.3	-	4	1013	c.458G>T	c.(457-459)AGC>ATC	p.S153I	NFE2L2_uc002ulg.3_Missense_Mutation_p.S137I|NFE2L2_uc010zfa.1_Missense_Mutation_p.S130I|NFE2L2_uc002uli.3_Missense_Mutation_p.S137I|NFE2L2_uc010fra.2_3'UTR	NM_006164	NP_006155
STAT1	6772	broad.mit.edu	37	2	191843748	191843748	+	Intron	SNP	C	T	T			2011-2368:2012-1297-T	g.chr2:191843748C>T	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron	NM_007315	NP_009330
PLCB1	23236	broad.mit.edu	37	20	8719918	8719918	+	Missense_Mutation	SNP	C	A	A			2011-2368:2012-1297-T	g.chr20:8719918C>A	uc002wnb.2	+	21	2222	c.2219C>A	c.(2218-2220)CCT>CAT	p.P740H	PLCB1_uc010zrb.1_Missense_Mutation_p.P639H|PLCB1_uc002wna.2_Missense_Mutation_p.P740H|PLCB1_uc002wnc.1_Missense_Mutation_p.P639H|PLCB1_uc002wnd.1_Missense_Mutation_p.P317H	NM_015192	NP_056007
BAGE2	85319	broad.mit.edu	37	21	11058212	11058212	+	Silent	SNP	T	A	A			2011-2368:2012-1297-T	g.chr21:11058212T>A	uc002yit.1	-	3	436	c.228A>T	c.(226-228)TCA>TCT	p.S76S	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288
BBX	56987	broad.mit.edu	37	3	107520025	107520025	+	Missense_Mutation	SNP	G	A	A			2011-2368:2012-1297-T	g.chr3:107520025G>A	uc010hpr.2	+	17	2962	c.2635G>A	c.(2635-2637)GAG>AAG	p.E879K	BBX_uc003dwk.3_Missense_Mutation_p.E849K|BBX_uc003dwl.3_Silent_p.P542P|BBX_uc003dwm.3_Missense_Mutation_p.E849K|BBX_uc003dwo.3_Silent_p.P195P	NM_001142568	NP_001136040
PIK3CA	5290	broad.mit.edu	37	3	178952074	178952074	+	Missense_Mutation	SNP	G	A	A	rs121913283		2011-2368:2012-1297-T	g.chr3:178952074G>A	uc003fjk.2	+	21	3286	c.3129G>A	c.(3127-3129)ATG>ATA	p.M1043I		NM_006218	NP_006209
TP63	8626	broad.mit.edu	37	3	189349218	189349218	+	5'UTR	SNP	C	A	A			2011-2368:2012-1297-T	g.chr3:189349218C>A	uc003fry.2	+	1					TP63_uc003frx.2_5'UTR|TP63_uc003frz.2_5'UTR|TP63_uc010hzc.1_5'UTR	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195502760	195502760	+	Intron	SNP	C	G	G			2011-2368:2012-1297-T	g.chr3:195502760C>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
MUC4	4585	broad.mit.edu	37	3	195502774	195502774	+	Intron	SNP	A	G	G			2011-2368:2012-1297-T	g.chr3:195502774A>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
TFRC	7037	broad.mit.edu	37	3	195780342	195780342	+	Missense_Mutation	SNP	C	A	A			2011-2368:2012-1297-T	g.chr3:195780342C>A	uc003fvz.3	-	18	2270	c.1987G>T	c.(1987-1989)GCT>TCT	p.A663S	TFRC_uc003fwa.3_Missense_Mutation_p.A663S|TFRC_uc010hzy.2_Missense_Mutation_p.A582S|TFRC_uc011btr.1_Missense_Mutation_p.A381S	NM_003234	NP_003225
REST	5978	broad.mit.edu	37	4	57797860	57797860	+	Nonsense_Mutation	SNP	G	T	T			2011-2368:2012-1297-T	g.chr4:57797860G>T	uc003hch.2	+	4	3183	c.2836G>T	c.(2836-2838)GAA>TAA	p.E946*	REST_uc003hci.2_Nonsense_Mutation_p.E946*|REST_uc010ihf.2_Nonsense_Mutation_p.E620*	NM_005612	NP_005603
CEP72	55722	broad.mit.edu	37	5	651157	651157	+	Intron	SNP	G	A	A	rs138759289		2011-2368:2012-1297-T	g.chr5:651157G>A	uc003jbf.2	+							NM_018140	NP_060610
C7orf50	84310	broad.mit.edu	37	7	1056183	1056183	+	Intron	SNP	G	A	A	rs114092963	by1000genomes	2011-2368:2012-1297-T	g.chr7:1056183G>A	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1056188	1056188	+	Intron	SNP	C	T	T	rs116398517	by1000genomes	2011-2368:2012-1297-T	g.chr7:1056188C>T	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
MLL3	58508	broad.mit.edu	37	7	151836742	151836742	+	Intron	SNP	C	T	T			2011-2368:2012-1297-T	g.chr7:151836742C>T	uc003wla.2	-						MLL3_uc003wkz.2_Intron|MLL3_uc003wkx.2_Intron|MLL3_uc003wky.2_Intron	NM_170606	NP_733751
ZFHX4	79776	broad.mit.edu	37	8	77768044	77768044	+	Missense_Mutation	SNP	G	T	T			2011-2368:2012-1297-T	g.chr8:77768044G>T	uc003yav.2	+	10	9139	c.8752G>T	c.(8752-8754)GGG>TGG	p.G2918W	ZFHX4_uc003yau.1_Missense_Mutation_p.G2963W|ZFHX4_uc003yaw.1_Missense_Mutation_p.G2918W	NM_024721	NP_078997
PKHD1L1	93035	broad.mit.edu	37	8	110520385	110520385	+	Missense_Mutation	SNP	G	T	T			2011-2368:2012-1297-T	g.chr8:110520385G>T	uc003yne.2	+	70	11391	c.11287G>T	c.(11287-11289)GGG>TGG	p.G3763W		NM_177531	NP_803875
EPHA2	1969	broad.mit.edu	37	1	16460967	16460967	+	Missense_Mutation	SNP	G	A	A			2011-2369:2012-1298-T	g.chr1:16460967G>A	uc001aya.1	-	8	1815	c.1678C>T	c.(1678-1680)CGC>TGC	p.R560C		NM_004431	NP_004422
NOTCH2	4853	broad.mit.edu	37	1	120463097	120463097	+	Intron	SNP	C	G	G			2011-2369:2012-1298-T	g.chr1:120463097C>G	uc001eik.2	-							NM_024408	NP_077719
FGFR2	2263	broad.mit.edu	37	10	123258034	123258034	+	Missense_Mutation	SNP	A	C	C	rs121913476		2011-2369:2012-1298-T	g.chr10:123258034A>C	uc010qtk.1	-	13	2294	c.1647T>G	c.(1645-1647)AAT>AAG	p.N549K	FGFR2_uc010qtg.1_Missense_Mutation_p.N437K|FGFR2_uc010qth.1_Missense_Mutation_p.N434K|FGFR2_uc010qti.1_Missense_Mutation_p.N460K|FGFR2_uc010qtj.1_Missense_Mutation_p.N550K|FGFR2_uc010qtl.1_Missense_Mutation_p.N433K|FGFR2_uc010qtm.1_Missense_Mutation_p.N432K|FGFR2_uc001lfl.3_Missense_Mutation_p.N550K|FGFR2_uc001lfm.2_Missense_Mutation_p.N461K|FGFR2_uc001lfg.3_Missense_Mutation_p.N157K	NM_000141	NP_000132
ERBB3	2065	broad.mit.edu	37	12	56495511	56495511	+	Missense_Mutation	SNP	C	G	G			2011-2369:2012-1298-T	g.chr12:56495511C>G	uc001sjh.2	+	28	3894	c.3701C>G	c.(3700-3702)TCT>TGT	p.S1234C	ERBB3_uc009zoj.2_RNA|ERBB3_uc010sqb.1_Missense_Mutation_p.S591C|ERBB3_uc010sqc.1_Missense_Mutation_p.S1175C|ERBB3_uc009zok.2_Missense_Mutation_p.S499C|ERBB3_uc001sjk.2_Missense_Mutation_p.S475C|ERBB3_uc001sjl.2_Missense_Mutation_p.S354C|PA2G4_uc001sjm.2_5'Flank|PA2G4_uc009zol.2_5'Flank|PA2G4_uc009zom.2_5'Flank	NM_001982	NP_001973
FANCA	2175	broad.mit.edu	37	16	89858505	89858505	+	Intron	SNP	T	C	C	rs6500452	byFrequency;by1000genomes	2011-2369:2012-1298-T	g.chr16:89858505T>C	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
NCOR1	9611	broad.mit.edu	37	17	15960901	15960901	+	Missense_Mutation	SNP	C	A	A			2011-2369:2012-1298-T	g.chr17:15960901C>A	uc002gpo.2	-	40	6559	c.6319G>T	c.(6319-6321)GCT>TCT	p.A2107S	NCOR1_uc002gpn.2_Missense_Mutation_p.A2004S|NCOR1_uc002gpl.2_Missense_Mutation_p.A122S|NCOR1_uc002gpm.2_Missense_Mutation_p.A627S|NCOR1_uc010vwb.1_Missense_Mutation_p.A691S|NCOR1_uc010coy.2_Missense_Mutation_p.A1015S|NCOR1_uc010vwc.1_Missense_Mutation_p.A917S	NM_006311	NP_006302
STAT3	6774	broad.mit.edu	37	17	40490019	40490019	+	Intron	SNP	T	G	G	rs71367911		2011-2369:2012-1298-T	g.chr17:40490019T>G	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
LRP1B	53353	broad.mit.edu	37	2	141122092	141122092	+	Intron	SNP	C	T	T			2011-2369:2012-1298-T	g.chr2:141122092C>T	uc002tvj.1	-							NM_018557	NP_061027
PLCB1	23236	broad.mit.edu	37	20	8639213	8639213	+	Missense_Mutation	SNP	G	A	A			2011-2369:2012-1298-T	g.chr20:8639213G>A	uc002wnb.2	+	9	727	c.724G>A	c.(724-726)GTT>ATT	p.V242I	PLCB1_uc010zrb.1_Missense_Mutation_p.V141I|PLCB1_uc002wna.2_Missense_Mutation_p.V242I|PLCB1_uc002wnc.1_Missense_Mutation_p.V141I	NM_015192	NP_056007
ARFGEF2	10564	broad.mit.edu	37	20	47641799	47641799	+	Intron	SNP	G	C	C			2011-2369:2012-1298-T	g.chr20:47641799G>C	uc002xtx.3	+						ARFGEF2_uc010zyf.1_Intron	NM_006420	NP_006411
MICAL3	57553	broad.mit.edu	37	22	18359618	18359618	+	Intron	SNP	G	C	C			2011-2369:2012-1298-T	g.chr22:18359618G>C	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
MYD88	4615	broad.mit.edu	37	3	38179998	38179998	+	5'UTR	SNP	A	C	C			2011-2369:2012-1298-T	g.chr3:38179998A>C	uc003chx.2	+	1					ACAA1_uc003cht.2_5'Flank|ACAA1_uc003chu.2_5'Flank|ACAA1_uc010hgy.2_5'Flank|ACAA1_uc010hgz.2_5'Flank|ACAA1_uc003chv.2_5'Flank|MYD88_uc011ayh.1_5'UTR|MYD88_uc011ayi.1_5'UTR|MYD88_uc011ayj.1_5'UTR|MYD88_uc011ayk.1_5'UTR|MYD88_uc011ayl.1_5'UTR	NM_002468	NP_002459
THSD7A	221981	broad.mit.edu	37	7	11485677	11485677	+	Intron	SNP	G	T	T			2011-2369:2012-1298-T	g.chr7:11485677G>T	uc003ssf.3	-							NM_015204	NP_056019
PTPRN2	5799	broad.mit.edu	37	7	157851862	157851862	+	Intron	SNP	A	C	C			2011-2369:2012-1298-T	g.chr7:157851862A>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
NOTCH1	4851	broad.mit.edu	37	9	139404185	139404185	+	Missense_Mutation	SNP	C	T	T			2011-2369:2012-1298-T	g.chr9:139404185C>T	uc004chz.2	-	18	2969	c.2969G>A	c.(2968-2970)AGC>AAC	p.S990N	NOTCH1_uc004cia.1_Missense_Mutation_p.S220N	NM_017617	NP_060087
C1orf173	127254	broad.mit.edu	37	1	75065555	75065555	+	Missense_Mutation	SNP	C	A	A			2011-2370:2012-1299-T	g.chr1:75065555C>A	uc001dgg.2	-	11	1769	c.1550G>T	c.(1549-1551)GGA>GTA	p.G517V	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.G311V	NM_001002912	NP_001002912
SPAG17	200162	broad.mit.edu	37	1	118727623	118727623	+	Intron	SNP	C	T	T			2011-2370:2012-1299-T	g.chr1:118727623C>T	uc001ehk.2	-							NM_206996	NP_996879
FLG2	388698	broad.mit.edu	37	1	152324066	152324066	+	Missense_Mutation	SNP	G	A	A			2011-2370:2012-1299-T	g.chr1:152324066G>A	uc001ezw.3	-	3	6269	c.6196C>T	c.(6196-6198)CAT>TAT	p.H2066Y	uc001ezv.2_Intron	NM_001014342	NP_001014364
ASH1L	55870	broad.mit.edu	37	1	155447719	155447719	+	Missense_Mutation	SNP	C	T	T			2011-2370:2012-1299-T	g.chr1:155447719C>T	uc009wqq.2	-	3	5422	c.4942G>A	c.(4942-4944)GAG>AAG	p.E1648K	ASH1L_uc001fkt.2_Missense_Mutation_p.E1648K|ASH1L_uc009wqr.1_Missense_Mutation_p.E1648K	NM_018489	NP_060959
ASH1L	55870	broad.mit.edu	37	1	155449774	155449774	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chr1:155449774C>G	uc009wqq.2	-	3	3367	c.2887G>C	c.(2887-2889)GAG>CAG	p.E963Q	ASH1L_uc001fkt.2_Missense_Mutation_p.E963Q|ASH1L_uc009wqr.1_Missense_Mutation_p.E963Q	NM_018489	NP_060959
ASH1L	55870	broad.mit.edu	37	1	155450367	155450367	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chr1:155450367C>G	uc009wqq.2	-	3	2774	c.2294G>C	c.(2293-2295)GGA>GCA	p.G765A	ASH1L_uc001fkt.2_Missense_Mutation_p.G765A|ASH1L_uc009wqr.1_Missense_Mutation_p.G765A	NM_018489	NP_060959
USH2A	7399	broad.mit.edu	37	1	216062090	216062090	+	Missense_Mutation	SNP	G	C	C			2011-2370:2012-1299-T	g.chr1:216062090G>C	uc001hku.1	-	41	8288	c.7901C>G	c.(7900-7902)TCT>TGT	p.S2634C		NM_206933	NP_996816
CUBN	8029	broad.mit.edu	37	10	17089579	17089579	+	Missense_Mutation	SNP	C	T	T			2011-2370:2012-1299-T	g.chr10:17089579C>T	uc001ioo.2	-	23	3215	c.3163G>A	c.(3163-3165)GAT>AAT	p.D1055N		NM_001081	NP_001072
AHNAK	79026	broad.mit.edu	37	11	62289889	62289889	+	Silent	SNP	C	T	T			2011-2370:2012-1299-T	g.chr11:62289889C>T	uc001ntl.2	-	5	12300	c.12000G>A	c.(11998-12000)AAG>AAA	p.K4000K	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
AHNAK	79026	broad.mit.edu	37	11	62290005	62290005	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chr11:62290005C>G	uc001ntl.2	-	5	12184	c.11884G>C	c.(11884-11886)GAC>CAC	p.D3962H	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
MLL2	8085	broad.mit.edu	37	12	49423262	49423262	+	Intron	SNP	G	C	C			2011-2370:2012-1299-T	g.chr12:49423262G>C	uc001rta.3	-							NM_003482	NP_003473
ANO4	121601	broad.mit.edu	37	12	101188252	101188252	+	5'Flank	SNP	C	G	G			2011-2370:2012-1299-T	g.chr12:101188252C>G	uc010svm.1	+						ANO4_uc010svl.1_Intron|ANO4_uc001thw.2_5'Flank	NM_178826	NP_849148
TPP2	7174	broad.mit.edu	37	13	103266520	103266520	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chr13:103266520C>G	uc001vpi.3	+	3	467	c.364C>G	c.(364-366)CCT>GCT	p.P122A		NM_003291	NP_003282
RPLP1	6176	broad.mit.edu	37	15	69745167	69745167	+	5'UTR	SNP	C	T	T			2011-2370:2012-1299-T	g.chr15:69745167C>T	uc002asd.1	+	1					RPLP1_uc002ase.1_5'UTR	NM_001003	NP_000994
PALB2	79728	broad.mit.edu	37	16	23649995	23649995	+	Intron	SNP	G	A	A			2011-2370:2012-1299-T	g.chr16:23649995G>A	uc002dlx.1	-						DCTN5_uc002dly.1_5'Flank	NM_024675	NP_078951
TP53	7157	broad.mit.edu	37	17	7579744	7579744	+	Intron	SNP	C	T	T			2011-2370:2012-1299-T	g.chr17:7579744C>T	uc002gim.2	-						TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Intron|TP53_uc010cni.1_Intron|TP53_uc002gij.2_Intron|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_5'UTR|TP53_uc010cnk.1_Intron	NM_001126112	NP_001119584
BRIP1	83990	broad.mit.edu	37	17	59924486	59924486	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chr17:59924486C>G	uc002izk.1	-	6	744	c.603G>C	c.(601-603)AAG>AAC	p.K201N		NM_032043	NP_114432
PIK3C3	5289	broad.mit.edu	37	18	39644851	39644851	+	Intron	SNP	G	A	A			2011-2370:2012-1299-T	g.chr18:39644851G>A	uc002lap.2	+						PIK3C3_uc010xcl.1_Intron|PIK3C3_uc002laq.2_Intron	NM_002647	NP_002638
NLRP11	204801	broad.mit.edu	37	19	56307547	56307547	+	Missense_Mutation	SNP	A	C	C			2011-2370:2012-1299-T	g.chr19:56307547A>C	uc010ygf.1	-	8	2952	c.2241T>G	c.(2239-2241)AGT>AGG	p.S747R	NLRP11_uc002qlz.2_Missense_Mutation_p.S594R|NLRP11_uc002qmb.2_Missense_Mutation_p.S648R|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444
LRP1B	53353	broad.mit.edu	37	2	140996919	140996919	+	Intron	SNP	C	T	T			2011-2370:2012-1299-T	g.chr2:140996919C>T	uc002tvj.1	-							NM_018557	NP_061027
NFE2L2	4780	broad.mit.edu	37	2	178098957	178098957	+	Missense_Mutation	SNP	G	A	A			2011-2370:2012-1299-T	g.chr2:178098957G>A	uc002ulh.3	-	2	643	c.88C>T	c.(88-90)CTT>TTT	p.L30F	NFE2L2_uc002ulg.3_Missense_Mutation_p.L14F|NFE2L2_uc010zfa.1_Missense_Mutation_p.L14F|NFE2L2_uc002uli.3_Missense_Mutation_p.L14F|NFE2L2_uc010fra.2_Missense_Mutation_p.L14F|NFE2L2_uc010frb.2_Missense_Mutation_p.L14F	NM_006164	NP_006155
RIPK4	54101	broad.mit.edu	37	21	43161574	43161574	+	Silent	SNP	C	T	T			2011-2370:2012-1299-T	g.chr21:43161574C>T	uc002yzn.1	-	8	1827	c.1779G>A	c.(1777-1779)CCG>CCA	p.P593P		NM_020639	NP_065690
FANCD2	2177	broad.mit.edu	37	3	10084761	10084761	+	Missense_Mutation	SNP	G	C	C			2011-2370:2012-1299-T	g.chr3:10084761G>C	uc003buw.2	+	12	994	c.916G>C	c.(916-918)GAT>CAT	p.D306H	FANCD2_uc003bux.1_Missense_Mutation_p.D306H|FANCD2_uc003buy.1_Missense_Mutation_p.D306H	NM_033084	NP_149075
EPHB1	2047	broad.mit.edu	37	3	134513960	134513960	+	5'Flank	SNP	C	G	G			2011-2370:2012-1299-T	g.chr3:134513960C>G	uc003eqt.2	+						EPHB1_uc010htz.1_5'Flank|EPHB1_uc011bly.1_5'Flank	NM_004441	NP_004432
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2011-2370:2012-1299-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
TP63	8626	broad.mit.edu	37	3	189587091	189587091	+	Intron	SNP	A	G	G	rs6789961	byFrequency;by1000genomes	2011-2370:2012-1299-T	g.chr3:189587091A>G	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
WHSC1	7468	broad.mit.edu	37	4	1895491	1895491	+	Intron	SNP	C	T	T			2011-2370:2012-1299-T	g.chr4:1895491C>T	uc003gdz.3	+						WHSC1_uc003geb.3_5'UTR|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gdx.2_Intron|WHSC1_uc003gdy.1_Intron|WHSC1_uc010icd.1_Intron|WHSC1_uc003gea.1_5'UTR	NM_001042424	NP_001035889
PDGFRA	5156	broad.mit.edu	37	4	55127392	55127392	+	Silent	SNP	C	A	A			2011-2370:2012-1299-T	g.chr4:55127392C>A	uc003han.3	+	3	511	c.180C>A	c.(178-180)CCC>CCA	p.P60P	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_Silent_p.P60P|PDGFRA_uc010igq.1_Intron|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197
KIT	3815	broad.mit.edu	37	4	55599219	55599219	+	Intron	SNP	C	G	G			2011-2370:2012-1299-T	g.chr4:55599219C>G	uc010igr.2	+						KIT_uc010igs.2_Intron	NM_000222	NP_000213
FAT1	2195	broad.mit.edu	37	4	187531156	187531156	+	Silent	SNP	G	A	A			2011-2370:2012-1299-T	g.chr4:187531156G>A	uc003izf.2	-	15	10055	c.9867C>T	c.(9865-9867)ATC>ATT	p.I3289I		NM_005245	NP_005236
FAT1	2195	broad.mit.edu	37	4	187535221	187535221	+	Intron	SNP	G	A	A			2011-2370:2012-1299-T	g.chr4:187535221G>A	uc003izf.2	-							NM_005245	NP_005236
FAT1	2195	broad.mit.edu	37	4	187541100	187541100	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chr4:187541100C>G	uc003izf.2	-	10	6828	c.6640G>C	c.(6640-6642)GTG>CTG	p.V2214L		NM_005245	NP_005236
DNAH5	1767	broad.mit.edu	37	5	13870893	13870893	+	Missense_Mutation	SNP	G	C	C			2011-2370:2012-1299-T	g.chr5:13870893G>C	uc003jfd.2	-	24	3859	c.3817C>G	c.(3817-3819)CAA>GAA	p.Q1273E		NM_001369	NP_001360
CDH12	1010	broad.mit.edu	37	5	21802380	21802380	+	Silent	SNP	G	A	A			2011-2370:2012-1299-T	g.chr5:21802380G>A	uc010iuc.2	-	7	1610	c.1152C>T	c.(1150-1152)TTC>TTT	p.F384F	CDH12_uc011cno.1_Silent_p.F344F|CDH12_uc003jgk.2_Silent_p.F384F	NM_004061	NP_004052
CDH12	1010	broad.mit.edu	37	5	22853526	22853526	+	5'UTR	SNP	C	T	T			2011-2370:2012-1299-T	g.chr5:22853526C>T	uc003jgk.2	-	1						NM_004061	NP_004052
PCDHB2	56133	broad.mit.edu	37	5	140474896	140474896	+	Silent	SNP	C	T	T			2011-2370:2012-1299-T	g.chr5:140474896C>T	uc003lil.2	+	1	660	c.522C>T	c.(520-522)ATC>ATT	p.I174I	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759
FAT2	2196	broad.mit.edu	37	5	150931089	150931089	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chr5:150931089C>G	uc003lue.3	-	6	4248	c.4235G>C	c.(4234-4236)AGA>ACA	p.R1412T	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438
NSD1	64324	broad.mit.edu	37	5	176687272	176687272	+	Intron	SNP	A	T	T			2011-2370:2012-1299-T	g.chr5:176687272A>T	uc003mfr.3	+						NSD1_uc003mft.3_Intron|NSD1_uc003mfs.1_Intron|NSD1_uc011dfx.1_Intron	NM_022455	NP_071900
HIST1H4H	8365	broad.mit.edu	37	6	26285919	26285919	+	5'Flank	SNP	G	C	C			2011-2370:2012-1299-T	g.chr6:26285919G>C	uc003nhm.2	-						HIST1H4H_uc003nhl.1_5'Flank	NM_003543	NP_003534
PHIP	55023	broad.mit.edu	37	6	79725435	79725435	+	Missense_Mutation	SNP	C	T	T			2011-2370:2012-1299-T	g.chr6:79725435C>T	uc003pir.2	-	14	1527	c.1301G>A	c.(1300-1302)CGA>CAA	p.R434Q	PHIP_uc011dyp.1_Missense_Mutation_p.R434Q	NM_017934	NP_060404
EPHA7	2045	broad.mit.edu	37	6	94129244	94129244	+	Translation_Start_Site	SNP	G	A	A			2011-2370:2012-1299-T	g.chr6:94129244G>A	uc003poe.2	-	1	57	c.-184C>T	c.(-186--182)CACGG>CATGG		EPHA7_uc003pof.2_Translation_Start_Site|EPHA7_uc011eac.1_Translation_Start_Site|EPHA7_uc003pog.3_Translation_Start_Site	NM_004440	NP_004431
SMOC2	64094	broad.mit.edu	37	6	169014595	169014595	+	Intron	SNP	G	C	C	rs111232055		2011-2370:2012-1299-T	g.chr6:169014595G>C	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
THSD7A	221981	broad.mit.edu	37	7	11485705	11485705	+	Missense_Mutation	SNP	G	C	C			2011-2370:2012-1299-T	g.chr7:11485705G>C	uc003ssf.3	-	13	3299	c.3047C>G	c.(3046-3048)TCT>TGT	p.S1016C		NM_015204	NP_056019
ZNF804B	219578	broad.mit.edu	37	7	88388454	88388454	+	5'Flank	SNP	A	C	C			2011-2370:2012-1299-T	g.chr7:88388454A>C	uc011khi.1	+							NM_181646	NP_857597
TRRAP	8295	broad.mit.edu	37	7	98565138	98565138	+	Silent	SNP	G	T	T	rs147466222		2011-2370:2012-1299-T	g.chr7:98565138G>T	uc003upp.2	+	50	7517	c.7308G>T	c.(7306-7308)ACG>ACT	p.T2436T	TRRAP_uc011kis.1_Silent_p.T2418T|TRRAP_uc003upr.2_Silent_p.T2135T	NM_003496	NP_003487
GRM8	2918	broad.mit.edu	37	7	126086289	126086289	+	Missense_Mutation	SNP	G	C	C			2011-2370:2012-1299-T	g.chr7:126086289G>C	uc003vlr.2	-	9	2879	c.2568C>G	c.(2566-2568)TTC>TTG	p.F856L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.F856L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836
GRM8	2918	broad.mit.edu	37	7	126086429	126086429	+	Intron	SNP	G	A	A			2011-2370:2012-1299-T	g.chr7:126086429G>A	uc003vlr.2	-						GRM8_uc003vls.2_Intron|GRM8_uc011kof.1_Intron|GRM8_uc003vlt.2_Intron|GRM8_uc010lkz.1_Intron	NM_000845	NP_000836
MLL3	58508	broad.mit.edu	37	7	151879229	151879229	+	Nonsense_Mutation	SNP	G	A	A			2011-2370:2012-1299-T	g.chr7:151879229G>A	uc003wla.2	-	36	5935	c.5716C>T	c.(5716-5718)CGA>TGA	p.R1906*	MLL3_uc003wkz.2_Nonsense_Mutation_p.R967*	NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	158234557	158234557	+	Intron	SNP	C	G	G	rs150461930	by1000genomes	2011-2370:2012-1299-T	g.chr7:158234557C>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TEX15	56154	broad.mit.edu	37	8	30704517	30704517	+	Missense_Mutation	SNP	C	T	T			2011-2370:2012-1299-T	g.chr8:30704517C>T	uc003xil.2	-	1	2017	c.2017G>A	c.(2017-2019)GAA>AAA	p.E673K		NM_031271	NP_112561
RB1CC1	9821	broad.mit.edu	37	8	53586461	53586461	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chr8:53586461C>G	uc003xre.3	-	7	1504	c.946G>C	c.(946-948)GAT>CAT	p.D316H	RB1CC1_uc003xrf.3_Missense_Mutation_p.D316H	NM_014781	NP_055596
NKAIN3	286183	broad.mit.edu	37	8	63777535	63777535	+	Intron	SNP	C	G	G			2011-2370:2012-1299-T	g.chr8:63777535C>G	uc010lyq.1	+							NM_173688	NP_775959
MMP16	4325	broad.mit.edu	37	8	89339455	89339455	+	5'UTR	SNP	G	A	A			2011-2370:2012-1299-T	g.chr8:89339455G>A	uc003yeb.3	-	1					MMP16_uc003yec.2_5'UTR	NM_005941	NP_005932
ZNF572	137209	broad.mit.edu	37	8	125989857	125989857	+	Silent	SNP	C	T	T			2011-2370:2012-1299-T	g.chr8:125989857C>T	uc003yrr.2	+	3	1502	c.1347C>T	c.(1345-1347)TTC>TTT	p.F449F		NM_152412	NP_689625
FANCC	2176	broad.mit.edu	37	9	97887597	97887597	+	Intron	SNP	C	A	A			2011-2370:2012-1299-T	g.chr9:97887597C>A	uc004avh.2	-						FANCC_uc004avi.3_Intron|uc004avj.2_5'Flank	NM_000136	NP_000127
NOTCH1	4851	broad.mit.edu	37	9	139396747	139396747	+	Silent	SNP	G	A	A			2011-2370:2012-1299-T	g.chr9:139396747G>A	uc004chz.2	-	28	5361	c.5361C>T	c.(5359-5361)CTC>CTT	p.L1787L		NM_017617	NP_060087
RGAG1	57529	broad.mit.edu	37	X	109695443	109695443	+	Missense_Mutation	SNP	C	G	G			2011-2370:2012-1299-T	g.chrX:109695443C>G	uc004eor.1	+	3	1844	c.1598C>G	c.(1597-1599)TCT>TGT	p.S533C	RGAG1_uc011msr.1_Missense_Mutation_p.S533C	NM_020769	NP_065820
STK32C	282974	broad.mit.edu	37	10	134096009	134096009	+	Intron	SNP	G	A	A	rs139299481	by1000genomes	2011-2371:2012-1300-T	g.chr10:134096009G>A	uc001lle.1	-						STK32C_uc001lld.1_Intron|STK32C_uc010quu.1_Intron|STK32C_uc009ybc.1_Intron|STK32C_uc009ybd.1_Intron	NM_173575	NP_775846
HRAS	3265	broad.mit.edu	37	11	533552	533552	+	Missense_Mutation	SNP	C	A	A			2011-2371:2012-1300-T	g.chr11:533552C>A	uc001lpv.2	-	4	539	c.351G>T	c.(349-351)AAG>AAT	p.K117N	HRAS_uc010qvw.1_Missense_Mutation_p.K117N|HRAS_uc010qvx.1_Missense_Mutation_p.K117N|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334
INF2	64423	broad.mit.edu	37	14	105325940	105325940	+	Intron	SNP	G	A	A			2011-2371:2012-1300-T	g.chr14:105325940G>A	uc010tyi.1	+							NM_022489	NP_071934
INF2	64423	broad.mit.edu	37	14	105325943	105325943	+	Intron	SNP	A	G	G			2011-2371:2012-1300-T	g.chr14:105325943A>G	uc010tyi.1	+							NM_022489	NP_071934
TTN	7273	broad.mit.edu	37	2	179486662	179486662	+	Missense_Mutation	SNP	C	A	A			2011-2371:2012-1300-T	g.chr2:179486662C>A	uc010zfg.1	-	193	37507	c.37283G>T	c.(37282-37284)CGC>CTC	p.R12428L	TTN_uc010zfh.1_Missense_Mutation_p.R6123L|TTN_uc010zfi.1_Missense_Mutation_p.R6056L|TTN_uc010zfj.1_Missense_Mutation_p.R5931L	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179592815	179592815	+	Intron	SNP	G	T	T			2011-2371:2012-1300-T	g.chr2:179592815G>T	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133378	NP_596869
PAX3	5077	broad.mit.edu	37	2	223160203	223160203	+	Intron	SNP	C	A	A			2011-2371:2012-1300-T	g.chr2:223160203C>A	uc010fwo.2	-						PAX3_uc002vmt.1_Intron|PAX3_uc002vmy.1_Intron|PAX3_uc002vmv.1_Intron|PAX3_uc002vmw.1_Intron|PAX3_uc002vmx.1_Intron|PAX3_uc002vmz.1_Intron|PAX3_uc002vna.1_Intron|CCDC140_uc002vnb.1_5'Flank	NM_181457	NP_852122
C20orf26	26074	broad.mit.edu	37	20	20338581	20338581	+	Intron	SNP	G	A	A			2011-2371:2012-1300-T	g.chr20:20338581G>A	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
FANCD2	2177	broad.mit.edu	37	3	10115175	10115175	+	Intron	SNP	G	C	C	rs3843378	by1000genomes	2011-2371:2012-1300-T	g.chr3:10115175G>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron	NM_033084	NP_149075
FAT1	2195	broad.mit.edu	37	4	187518976	187518976	+	Intron	SNP	C	T	T	rs2306990	by1000genomes	2011-2371:2012-1300-T	g.chr4:187518976C>T	uc003izf.2	-						FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_5'Flank	NM_005245	NP_005236
BTNL9	153579	broad.mit.edu	37	5	180473002	180473002	+	Intron	SNP	C	T	T			2011-2371:2012-1300-T	g.chr5:180473002C>T	uc003mmt.2	+						BTNL9_uc011dhi.1_Intron	NM_152547	NP_689760
E2F3	1871	broad.mit.edu	37	6	20401784	20401784	+	5'Flank	SNP	G	T	T			2011-2371:2012-1300-T	g.chr6:20401784G>T	uc003nda.2	+						E2F3_uc003ncz.2_5'Flank	NM_001949	NP_001940
POU5F1	5460	broad.mit.edu	37	6	31133943	31133943	+	Intron	SNP	C	A	A	rs115857083	byFrequency;by1000genomes	2011-2371:2012-1300-T	g.chr6:31133943C>A	uc003nsv.2	-						POU5F1_uc003nsu.2_Missense_Mutation_p.R1M	NM_002701	NP_002692
ERICH1	157697	broad.mit.edu	37	8	650510	650510	+	Intron	SNP	G	T	T	rs112179967		2011-2371:2012-1300-T	g.chr8:650510G>T	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron	NM_207332	NP_997215
PCM1	5108	broad.mit.edu	37	8	17780286	17780286	+	5'Flank	SNP	T	G	G			2011-2371:2012-1300-T	g.chr8:17780286T>G	uc003wyi.3	+						PCM1_uc011kyh.1_5'Flank|PCM1_uc003wyj.3_5'Flank|PCM1_uc003wyg.2_5'Flank|PCM1_uc003wyh.2_5'Flank|PCM1_uc010lta.1_5'Flank	NM_006197	NP_006188
NECAB1	64168	broad.mit.edu	37	8	91884534	91884534	+	Intron	SNP	G	A	A	rs7829663	by1000genomes	2011-2371:2012-1300-T	g.chr8:91884534G>A	uc011lgg.1	+							NM_022351	NP_071746
NOTCH2	4853	broad.mit.edu	37	1	120539530	120539530	+	Intron	SNP	G	C	C	rs2746768	by1000genomes	2011-2373:2012-1301-T	g.chr1:120539530G>C	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
SMYD3	64754	broad.mit.edu	37	1	246139563	246139563	+	Intron	SNP	C	T	T			2011-2373:2012-1301-T	g.chr1:246139563C>T	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
TSPAN9	10867	broad.mit.edu	37	12	3377728	3377728	+	Intron	SNP	C	A	A			2011-2373:2012-1301-T	g.chr12:3377728C>A	uc001qlp.2	+							NM_006675	NP_006666
NRXN3	9369	broad.mit.edu	37	14	78869886	78869886	+	5'Flank	SNP	C	G	G			2011-2373:2012-1301-T	g.chr14:78869886C>G	uc001xun.2	+						NRXN3_uc001xum.1_Intron	NM_004796	NP_004787
MTA1	9112	broad.mit.edu	37	14	105924695	105924695	+	Silent	SNP	C	T	T			2011-2373:2012-1301-T	g.chr14:105924695C>T	uc001yqx.2	+	8	826	c.639C>T	c.(637-639)TTC>TTT	p.F213F	MTA1_uc001yqy.2_RNA|MTA1_uc001yqz.1_Silent_p.F127F|MTA1_uc001yra.1_Silent_p.F127F|MTA1_uc001yrb.2_5'UTR	NM_004689	NP_004680
B2M	567	broad.mit.edu	37	15	45007672	45007672	+	Nonsense_Mutation	SNP	C	G	G			2011-2373:2012-1301-T	g.chr15:45007672C>G	uc001zuc.2	+	2	179	c.119C>G	c.(118-120)TCA>TGA	p.S40*	B2M_uc010uek.1_Nonsense_Mutation_p.S40*|B2M_uc010bdx.1_Nonsense_Mutation_p.S40*	NM_004048	NP_004039
SMG1	23049	broad.mit.edu	37	16	18821026	18821026	+	Intron	SNP	G	T	T			2011-2373:2012-1301-T	g.chr16:18821026G>T	uc002dfm.2	-						SMG1_uc010bwb.2_Intron|SMG1_uc010bwa.2_Intron	NM_015092	NP_055907
CYLD	1540	broad.mit.edu	37	16	50776513	50776513	+	Intron	SNP	G	A	A			2011-2373:2012-1301-T	g.chr16:50776513G>A	uc002egp.1	+						CYLD_uc002egn.1_Intron|CYLD_uc002ego.2_Intron|CYLD_uc010cbs.1_Intron|CYLD_uc002egq.1_Intron|CYLD_uc002egr.1_Intron	NM_015247	NP_056062
KLHDC4	54758	broad.mit.edu	37	16	87772408	87772408	+	Intron	SNP	T	C	C			2011-2373:2012-1301-T	g.chr16:87772408T>C	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
PRKCA	5578	broad.mit.edu	37	17	64685053	64685053	+	Intron	SNP	C	T	T			2011-2373:2012-1301-T	g.chr17:64685053C>T	uc002jfp.1	+						PRKCA_uc002jfo.1_Intron	NM_002737	NP_002728
KEAP1	9817	broad.mit.edu	37	19	10599845	10599845	+	Intron	SNP	C	A	A			2011-2373:2012-1301-T	g.chr19:10599845C>A	uc002moq.1	-						KEAP1_uc002mop.1_Intron|KEAP1_uc002mor.1_Intron	NM_012289	NP_036421
RMND5A	64795	broad.mit.edu	37	2	87623808	87623808	+	Intron	SNP	G	A	A			2011-2373:2012-1301-T	g.chr2:87623808G>A	uc002srs.3	+								
ZNF217	7764	broad.mit.edu	37	20	52193352	52193352	+	Missense_Mutation	SNP	G	A	A			2011-2373:2012-1301-T	g.chr20:52193352G>A	uc002xwq.3	-	3	2222	c.1951C>T	c.(1951-1953)CCG>TCG	p.P651S	ZNF217_uc010gij.1_Missense_Mutation_p.P643S	NM_006526	NP_006517
ZIC1	7545	broad.mit.edu	37	3	147124919	147124919	+	5'Flank	SNP	C	G	G			2011-2373:2012-1301-T	g.chr3:147124919C>G	uc003ewe.2	+						ZIC4_uc011bno.1_5'Flank|ZIC4_uc003ewd.1_5'Flank	NM_003412	NP_003403
REST	5978	broad.mit.edu	37	4	57774255	57774255	+	Translation_Start_Site	SNP	C	T	T			2011-2373:2012-1301-T	g.chr4:57774255C>T	uc003hch.2	+	1	214	c.-133C>T	c.(-135--131)GACGG>GATGG		REST_uc003hci.2_5'Flank|REST_uc003hcj.1_5'Flank|REST_uc010ihf.2_5'Flank	NM_005612	NP_005603
PHF17	79960	broad.mit.edu	37	4	129736265	129736265	+	Intron	SNP	T	C	C			2011-2373:2012-1301-T	g.chr4:129736265T>C	uc003igk.2	+						PHF17_uc003igj.2_Intron|PHF17_uc003igl.2_Intron|PHF17_uc011cgy.1_Intron|PHF17_uc003igm.2_Intron	NM_199320	NP_955352
INPP4B	8821	broad.mit.edu	37	4	143114398	143114398	+	Intron	SNP	C	T	T			2011-2373:2012-1301-T	g.chr4:143114398C>T	uc003iix.3	-						INPP4B_uc003iiw.3_Intron|INPP4B_uc011chm.1_Intron|INPP4B_uc011chn.1_Intron|INPP4B_uc011cho.1_Intron|INPP4B_uc011chp.1_Intron	NM_003866	NP_003857
FAT1	2195	broad.mit.edu	37	4	187538014	187538014	+	Intron	SNP	T	A	A			2011-2373:2012-1301-T	g.chr4:187538014T>A	uc003izf.2	-							NM_005245	NP_005236
SRPK2	6733	broad.mit.edu	37	7	104909416	104909416	+	5'UTR	SNP	G	A	A			2011-2373:2012-1301-T	g.chr7:104909416G>A	uc003vct.2	-	1					SRPK2_uc003vcu.2_Intron|SRPK2_uc003vcv.2_Intron|SRPK2_uc003vcw.1_Intron	NM_182691	NP_872633
TSC1	7248	broad.mit.edu	37	9	135787747	135787747	+	Missense_Mutation	SNP	G	A	A	rs118203457		2011-2373:2012-1301-T	g.chr9:135787747G>A	uc004cca.2	-	9	1069	c.835C>T	c.(835-837)CAC>TAC	p.H279Y	TSC1_uc004ccb.3_Missense_Mutation_p.H279Y|TSC1_uc011mcq.1_Missense_Mutation_p.H228Y|TSC1_uc011mcr.1_Missense_Mutation_p.H158Y|TSC1_uc011mcs.1_Missense_Mutation_p.H158Y|TSC1_uc004ccc.1_Missense_Mutation_p.H279Y|TSC1_uc004ccd.2_Missense_Mutation_p.H279Y|TSC1_uc004cce.1_Missense_Mutation_p.H279Y	NM_000368	NP_000359
FANCB	2187	broad.mit.edu	37	X	14887147	14887147	+	5'UTR	SNP	C	G	G	rs2188383	by1000genomes	2011-2373:2012-1301-T	g.chrX:14887147C>G	uc004cwg.1	-	2					FANCB_uc004cwh.1_Intron	NM_001018113	NP_001018123
HUWE1	10075	broad.mit.edu	37	X	53560299	53560299	+	Missense_Mutation	SNP	C	G	G			2011-2373:2012-1301-T	g.chrX:53560299C>G	uc004dsp.2	-	84	13498	c.13096G>C	c.(13096-13098)GAG>CAG	p.E4366Q	HUWE1_uc004dsn.2_Missense_Mutation_p.E3174Q	NM_031407	NP_113584
HUWE1	10075	broad.mit.edu	37	X	53560335	53560335	+	Missense_Mutation	SNP	C	G	G			2011-2373:2012-1301-T	g.chrX:53560335C>G	uc004dsp.2	-	84	13462	c.13060G>C	c.(13060-13062)GAG>CAG	p.E4354Q	HUWE1_uc004dsn.2_Missense_Mutation_p.E3162Q	NM_031407	NP_113584
GPR123	84435	broad.mit.edu	37	10	134891742	134891742	+	Intron	SNP	T	G	G	rs71991644		2011-2374:2012-1302-T	g.chr10:134891742T>G	uc001llw.2	+								
GPR123	84435	broad.mit.edu	37	10	134891750	134891750	+	Intron	SNP	T	G	G			2011-2374:2012-1302-T	g.chr10:134891750T>G	uc001llw.2	+								
CACNA1C	775	broad.mit.edu	37	12	2389457	2389457	+	Intron	SNP	A	G	G	rs4765912		2011-2374:2012-1302-T	g.chr12:2389457A>G	uc009zdu.1	+						CACNA1C_uc009zdv.1_Intron|CACNA1C_uc001qkb.2_Intron|CACNA1C_uc001qkc.2_Intron|CACNA1C_uc001qke.2_Intron|CACNA1C_uc001qkf.2_Intron|CACNA1C_uc001qjz.2_Intron|CACNA1C_uc001qkd.2_Intron|CACNA1C_uc001qkg.2_Intron|CACNA1C_uc009zdw.1_Intron|CACNA1C_uc001qkh.2_Intron|CACNA1C_uc001qkl.2_Intron|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Intron|CACNA1C_uc001qkp.2_Intron|CACNA1C_uc001qkr.2_Intron|CACNA1C_uc001qku.2_Intron|CACNA1C_uc001qkq.2_Intron|CACNA1C_uc001qks.2_Intron|CACNA1C_uc001qkt.2_Intron|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Intron|CACNA1C_uc001qkj.1_Intron|CACNA1C_uc001qkk.1_Intron|CACNA1C_uc001qkm.1_Intron	NM_199460	NP_955630
MLL2	8085	broad.mit.edu	37	12	49425086	49425086	+	Missense_Mutation	SNP	G	A	A			2011-2374:2012-1302-T	g.chr12:49425086G>A	uc001rta.3	-	39	13402	c.13402C>T	c.(13402-13404)CGG>TGG	p.R4468W		NM_003482	NP_003473
CDK4	1019	broad.mit.edu	37	12	58143178	58143178	+	Intron	SNP	G	T	T			2011-2374:2012-1302-T	g.chr12:58143178G>T	uc001spv.2	-						CDK4_uc010ssb.1_Intron|CDK4_uc001spw.2_Intron|uc010ssc.1_5'Flank	NM_000075	NP_000066
LRFN5	145581	broad.mit.edu	37	14	42077254	42077254	+	5'UTR	SNP	C	T	T			2011-2374:2012-1302-T	g.chr14:42077254C>T	uc001wvm.2	+	1						NM_152447	NP_689660
SYNE2	23224	broad.mit.edu	37	14	64450371	64450371	+	Intron	SNP	T	G	G			2011-2374:2012-1302-T	g.chr14:64450371T>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64565795	64565795	+	Intron	SNP	G	C	C			2011-2374:2012-1302-T	g.chr14:64565795G>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apx.1_3'UTR|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
BTBD12	84464	broad.mit.edu	37	16	3658568	3658568	+	Missense_Mutation	SNP	G	A	A			2011-2374:2012-1302-T	g.chr16:3658568G>A	uc002cvp.2	-	2	1025	c.398C>T	c.(397-399)CCG>CTG	p.P133L	BTBD12_uc002cvq.1_Missense_Mutation_p.P133L	NM_032444	NP_115820
TTN	7273	broad.mit.edu	37	2	179431601	179431601	+	Missense_Mutation	SNP	C	T	T			2011-2374:2012-1302-T	g.chr2:179431601C>T	uc010zfg.1	-	275	71778	c.71554G>A	c.(71554-71556)GGT>AGT	p.G23852S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G17547S|TTN_uc010zfi.1_Missense_Mutation_p.G17480S|TTN_uc010zfj.1_Missense_Mutation_p.G17355S	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179635936	179635936	+	Splice_Site	SNP	G	C	C			2011-2374:2012-1302-T	g.chr2:179635936G>C	uc010zfg.1	-	34	8340	c.8116_splice	c.e34+1	p.A2706_splice	TTN_uc010zfh.1_Splice_Site_p.A2660_splice|TTN_uc010zfi.1_Splice_Site_p.A2660_splice|TTN_uc010zfj.1_Splice_Site_p.A2660_splice|TTN_uc002unb.2_Splice_Site_p.A2706_splice	NM_133378	NP_596869
ORMDL1	94101	broad.mit.edu	37	2	190648404	190648404	+	5'Flank	SNP	C	A	A			2011-2374:2012-1302-T	g.chr2:190648404C>A	uc002urb.3	-						PMS1_uc010zga.1_5'Flank|PMS1_uc010zgb.1_5'Flank|PMS1_uc002urh.3_5'Flank|PMS1_uc002urk.3_5'Flank|PMS1_uc002uri.3_5'Flank|PMS1_uc010zgc.1_5'Flank|PMS1_uc010zgd.1_5'Flank|PMS1_uc002urj.2_5'Flank|ORMDL1_uc002urc.3_Intron|ORMDL1_uc002urd.3_Intron|ORMDL1_uc002ure.3_Intron|ORMDL1_uc002urf.3_Intron|PMS1_uc010zfz.1_5'Flank	NM_016467	NP_057551
BAGE2	85319	broad.mit.edu	37	21	11038946	11038946	+	3'UTR	SNP	A	C	C			2011-2374:2012-1302-T	g.chr21:11038946A>C	uc002yit.1	-	6					TPTE_uc002yis.1_RNA	NM_182482	NP_872288
PIK3CA	5290	broad.mit.edu	37	3	178867188	178867188	+	Intron	SNP	T	G	G			2011-2374:2012-1302-T	g.chr3:178867188T>G	uc003fjk.2	+						uc003fjj.2_5'Flank	NM_006218	NP_006209
PDGFRA	5156	broad.mit.edu	37	4	55151585	55151585	+	Missense_Mutation	SNP	A	C	C			2011-2374:2012-1302-T	g.chr4:55151585A>C	uc003han.3	+	17	2702	c.2371A>C	c.(2371-2373)ACT>CCT	p.T791P	PDGFRA_uc003haa.2_Missense_Mutation_p.T551P	NM_006206	NP_006197
CDH9	1007	broad.mit.edu	37	5	26890659	26890659	+	Missense_Mutation	SNP	C	T	T			2011-2374:2012-1302-T	g.chr5:26890659C>T	uc003jgs.1	-	8	1437	c.1268G>A	c.(1267-1269)CGG>CAG	p.R423Q	CDH9_uc011cnv.1_Missense_Mutation_p.R16Q	NM_016279	NP_057363
PIK3R1	5295	broad.mit.edu	37	5	67569391	67569391	+	Intron	SNP	A	C	C	rs2302974	by1000genomes	2011-2374:2012-1302-T	g.chr5:67569391A>C	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron	NM_181523	NP_852664
PCM1	5108	broad.mit.edu	37	8	17843508	17843508	+	Missense_Mutation	SNP	G	T	T			2011-2374:2012-1302-T	g.chr8:17843508G>T	uc003wyi.3	+	26	4744	c.4322G>T	c.(4321-4323)GGA>GTA	p.G1441V	PCM1_uc011kyh.1_Missense_Mutation_p.G1441V|PCM1_uc003wyj.3_Missense_Mutation_p.G1387V|PCM1_uc011kyi.1_Missense_Mutation_p.G248V|PCM1_uc011kyj.1_Missense_Mutation_p.G197V|PCM1_uc003wyk.3_Missense_Mutation_p.G123V|PCM1_uc011kyk.1_Missense_Mutation_p.G65V	NM_006197	NP_006188
UBR5	51366	broad.mit.edu	37	8	103291056	103291056	+	Missense_Mutation	SNP	C	T	T			2011-2374:2012-1302-T	g.chr8:103291056C>T	uc003ykr.1	-	44	6319	c.6286G>A	c.(6286-6288)GAG>AAG	p.E2096K	UBR5_uc003yks.1_Missense_Mutation_p.E2096K	NM_015902	NP_056986
CSMD3	114788	broad.mit.edu	37	8	113326586	113326586	+	Intron	SNP	C	T	T			2011-2374:2012-1302-T	g.chr8:113326586C>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc003ynw.1_Intron	NM_198123	NP_937756
FAM135B	51059	broad.mit.edu	37	8	139165412	139165412	+	Missense_Mutation	SNP	G	T	T			2011-2374:2012-1302-T	g.chr8:139165412G>T	uc003yuy.2	-	13	1477	c.1306C>A	c.(1306-1308)CCT>ACT	p.P436T	FAM135B_uc003yux.2_Missense_Mutation_p.P337T|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_5'UTR|FAM135B_uc003yvb.2_5'UTR	NM_015912	NP_056996
MEGF6	1953	broad.mit.edu	37	1	3493431	3493431	+	Intron	SNP	C	T	T			2012-1342:2012-1313-T	g.chr1:3493431C>T	uc001akl.2	-							NM_001409	NP_001400
MEGF6	1953	broad.mit.edu	37	1	3493440	3493440	+	Intron	SNP	C	T	T	rs6657297		2012-1342:2012-1313-T	g.chr1:3493440C>T	uc001akl.2	-							NM_001409	NP_001400
EPHA2	1969	broad.mit.edu	37	1	16461942	16461942	+	Intron	SNP	C	T	T			2012-1342:2012-1313-T	g.chr1:16461942C>T	uc001aya.1	-							NM_004431	NP_004422
NOTCH2	4853	broad.mit.edu	37	1	120460203	120460203	+	Intron	SNP	G	C	C			2012-1342:2012-1313-T	g.chr1:120460203G>C	uc001eik.2	-							NM_024408	NP_077719
NOTCH2	4853	broad.mit.edu	37	1	120460218	120460218	+	Intron	SNP	G	C	C			2012-1342:2012-1313-T	g.chr1:120460218G>C	uc001eik.2	-							NM_024408	NP_077719
NOTCH2	4853	broad.mit.edu	37	1	120461898	120461898	+	Intron	SNP	G	A	A			2012-1342:2012-1313-T	g.chr1:120461898G>A	uc001eik.2	-							NM_024408	NP_077719
NOTCH2	4853	broad.mit.edu	37	1	120611554	120611555	+	Intron	DNP	TT	CG	CG	rs75248693;rs77254078		2012-1342:2012-1313-T	g.chr1:120611554_120611555TT>CG	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
FLG	2312	broad.mit.edu	37	1	152282324	152282324	+	Nonsense_Mutation	SNP	T	A	A			2012-1342:2012-1313-T	g.chr1:152282324T>A	uc001ezu.1	-	3	5074	c.5038A>T	c.(5038-5040)AGA>TGA	p.R1680*		NM_002016	NP_002007
ARHGAP30	257106	broad.mit.edu	37	1	161017939	161017939	+	Missense_Mutation	SNP	G	A	A			2012-1342:2012-1313-T	g.chr1:161017939G>A	uc001fxl.2	-	12	3218	c.2872C>T	c.(2872-2874)CAT>TAT	p.H958Y	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Missense_Mutation_p.H747Y|ARHGAP30_uc001fxm.2_Missense_Mutation_p.H804Y|ARHGAP30_uc009wtx.2_Missense_Mutation_p.H631Y	NM_001025598	NP_001020769
DDR2	4921	broad.mit.edu	37	1	162688826	162688826	+	Splice_Site	SNP	G	C	C			2012-1342:2012-1313-T	g.chr1:162688826G>C	uc001gcf.2	+	4	439	c.-26_splice	c.e4-1		DDR2_uc001gcg.2_Splice_Site	NM_001014796	NP_001014796
GPR137B	7107	broad.mit.edu	37	1	236313455	236313455	+	Intron	SNP	C	T	T			2012-1342:2012-1313-T	g.chr1:236313455C>T	uc001hxq.2	+							NM_003272	NP_003263
NRAP	4892	broad.mit.edu	37	10	115392771	115392771	+	Intron	SNP	G	C	C			2012-1342:2012-1313-T	g.chr10:115392771G>C	uc001laj.2	-						NRAP_uc001lak.2_Intron|NRAP_uc001lal.3_Intron	NM_198060	NP_932326
JAKMIP3	282973	broad.mit.edu	37	10	133973899	133973899	+	Intron	SNP	A	G	G			2012-1342:2012-1313-T	g.chr10:133973899A>G	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
ETV6	2120	broad.mit.edu	37	12	12006501	12006501	+	Intron	SNP	G	A	A			2012-1342:2012-1313-T	g.chr12:12006501G>A	uc001qzz.2	+							NM_001987	NP_001978
ABCD2	225	broad.mit.edu	37	12	40014387	40014387	+	5'Flank	SNP	C	G	G			2012-1342:2012-1313-T	g.chr12:40014387C>G	uc001rmb.2	-							NM_005164	NP_005155
SYNE2	23224	broad.mit.edu	37	14	64445774	64445774	+	Intron	SNP	C	G	G			2012-1342:2012-1313-T	g.chr14:64445774C>G	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64488794	64488794	+	Intron	SNP	G	A	A			2012-1342:2012-1313-T	g.chr14:64488794G>A	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64490898	64490898	+	Intron	SNP	G	C	C			2012-1342:2012-1313-T	g.chr14:64490898G>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64593093	64593093	+	Missense_Mutation	SNP	G	C	C			2012-1342:2012-1313-T	g.chr14:64593093G>C	uc001xgm.2	+	72	13833	c.13603G>C	c.(13603-13605)GAA>CAA	p.E4535Q	SYNE2_uc001xgl.2_Missense_Mutation_p.E4535Q|SYNE2_uc010apy.2_Missense_Mutation_p.E920Q|SYNE2_uc010apz.1_Missense_Mutation_p.E427Q	NM_015180	NP_055995
TP53	7157	broad.mit.edu	37	17	7578290	7578290	+	Splice_Site	SNP	C	A	A			2012-1342:2012-1313-T	g.chr17:7578290C>A	uc002gim.2	-	6	754	c.560_splice	c.e6-1	p.G187_splice	TP53_uc002gig.1_Splice_Site_p.G187_splice|TP53_uc002gih.2_Splice_Site_p.G187_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Splice_Site_p.G55_splice|TP53_uc010cng.1_Splice_Site_p.G55_splice|TP53_uc002gii.1_Splice_Site_p.G55_splice|TP53_uc010cnh.1_Splice_Site_p.G187_splice|TP53_uc010cni.1_Splice_Site_p.G187_splice|TP53_uc002gij.2_Splice_Site_p.G187_splice|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Splice_Site_p.G94_splice|TP53_uc002gio.2_Splice_Site_p.G55_splice|TP53_uc010vug.1_Intron	NM_001126112	NP_001119584
CSNK1D	1453	broad.mit.edu	37	17	80211747	80211747	+	Intron	SNP	G	A	A			2012-1342:2012-1313-T	g.chr17:80211747G>A	uc002kej.2	-						SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Intron|CSNK1D_uc002kei.2_Intron|CSNK1D_uc010wvj.1_Intron|CSNK1D_uc010dil.2_5'Flank|CSNK1D_uc002keh.2_5'UTR|CSNK1D_uc010dim.1_5'Flank	NM_001893	NP_001884
PIK3C3	5289	broad.mit.edu	37	18	39534955	39534955	+	5'Flank	SNP	C	G	G			2012-1342:2012-1313-T	g.chr18:39534955C>G	uc002lap.2	+						PIK3C3_uc010xcl.1_5'Flank|PIK3C3_uc002lao.2_5'Flank	NM_002647	NP_002638
PLIN5	440503	broad.mit.edu	37	19	4525884	4525884	+	Intron	SNP	C	A	A			2012-1342:2012-1313-T	g.chr19:4525884C>A	uc002mas.2	-							NM_001013706	NP_001013728
DYRK1B	9149	broad.mit.edu	37	19	40321423	40321423	+	Missense_Mutation	SNP	C	G	G			2012-1342:2012-1313-T	g.chr19:40321423C>G	uc002omj.2	-	3	344	c.64G>C	c.(64-66)GTA>CTA	p.V22L	DYRK1B_uc002omi.2_Missense_Mutation_p.V22L|DYRK1B_uc002omk.2_Missense_Mutation_p.V22L|DYRK1B_uc002oml.2_Missense_Mutation_p.V22L	NM_004714	NP_004705
LRRTM1	347730	broad.mit.edu	37	2	80530585	80530585	+	Silent	SNP	C	T	T			2012-1342:2012-1313-T	g.chr2:80530585C>T	uc002sok.1	-	2	630	c.360G>A	c.(358-360)CTG>CTA	p.L120L	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161
INPP4A	3631	broad.mit.edu	37	2	99189293	99189293	+	Missense_Mutation	SNP	G	A	A			2012-1342:2012-1313-T	g.chr2:99189293G>A	uc002syy.2	+	24	2942	c.2549G>A	c.(2548-2550)CGC>CAC	p.R850H	INPP4A_uc010yvj.1_Missense_Mutation_p.R811H|INPP4A_uc010yvk.1_Missense_Mutation_p.R811H|INPP4A_uc002syx.2_Missense_Mutation_p.R845H|INPP4A_uc010fik.2_Missense_Mutation_p.R179H	NM_001134224	NP_001127696
TTN	7273	broad.mit.edu	37	2	179404502	179404502	+	Nonsense_Mutation	SNP	C	A	A			2012-1342:2012-1313-T	g.chr2:179404502C>A	uc010zfg.1	-	301	90810	c.90586G>T	c.(90586-90588)GAA>TAA	p.E30196*	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.E23891*|TTN_uc010zfi.1_Nonsense_Mutation_p.E23824*|TTN_uc010zfj.1_Nonsense_Mutation_p.E23699*	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179425484	179425484	+	Missense_Mutation	SNP	C	G	G			2012-1342:2012-1313-T	g.chr2:179425484C>G	uc010zfg.1	-	275	77895	c.77671G>C	c.(77671-77673)GAA>CAA	p.E25891Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E19586Q|TTN_uc010zfi.1_Missense_Mutation_p.E19519Q|TTN_uc010zfj.1_Missense_Mutation_p.E19394Q	NM_133378	NP_596869
XRCC6	2547	broad.mit.edu	37	22	42049456	42049456	+	Intron	SNP	G	C	C			2012-1342:2012-1313-T	g.chr22:42049456G>C	uc003bao.1	+						XRCC6_uc003bap.1_Intron|XRCC6_uc011apc.1_Intron|XRCC6_uc003baq.1_Intron|XRCC6_uc003bar.1_Intron|XRCC6_uc003bas.1_Intron	NM_001469	NP_001460
SULT4A1	25830	broad.mit.edu	37	22	44230966	44230967	+	Intron	DNP	GC	AG	AG			2012-1342:2012-1313-T	g.chr22:44230966_44230967GC>AG	uc003bee.1	-						SULT4A1_uc003bed.1_Intron|SULT4A1_uc003bef.1_Intron|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166
SULT4A1	25830	broad.mit.edu	37	22	44230970	44230970	+	Intron	SNP	C	A	A			2012-1342:2012-1313-T	g.chr22:44230970C>A	uc003bee.1	-						SULT4A1_uc003bed.1_Intron|SULT4A1_uc003bef.1_Intron|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166
CCR5	1234	broad.mit.edu	37	3	46412259	46412259	+	Intron	SNP	C	T	T	rs1799988	by1000genomes	2012-1342:2012-1313-T	g.chr3:46412259C>T	uc003cpo.3	+						CCR5_uc010hjd.2_5'UTR	NM_001100168	NP_001093638
CHCHD6	84303	broad.mit.edu	37	3	126580660	126580660	+	Intron	SNP	A	C	C			2012-1342:2012-1313-T	g.chr3:126580660A>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
SI	6476	broad.mit.edu	37	3	164725661	164725661	+	Intron	SNP	A	T	T			2012-1342:2012-1313-T	g.chr3:164725661A>T	uc003fei.2	-							NM_001041	NP_001032
SI	6476	broad.mit.edu	37	3	164758702	164758702	+	Intron	SNP	T	C	C			2012-1342:2012-1313-T	g.chr3:164758702T>C	uc003fei.2	-							NM_001041	NP_001032
PIK3CA	5290	broad.mit.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A	rs121913273		2012-1342:2012-1313-T	g.chr3:178936082G>A	uc003fjk.2	+	10	1781	c.1624G>A	c.(1624-1626)GAA>AAA	p.E542K		NM_006218	NP_006209
PIK3CA	5290	broad.mit.edu	37	3	178948019	178948019	+	Missense_Mutation	SNP	C	T	T			2012-1342:2012-1313-T	g.chr3:178948019C>T	uc003fjk.2	+	20	2948	c.2791C>T	c.(2791-2793)CAT>TAT	p.H931Y		NM_006218	NP_006209
ETV5	2119	broad.mit.edu	37	3	185774875	185774875	+	Missense_Mutation	SNP	C	G	G			2012-1342:2012-1313-T	g.chr3:185774875C>G	uc003fpz.2	-	11	1445	c.1198G>C	c.(1198-1200)GAA>CAA	p.E400Q	ETV5_uc003fpy.2_Missense_Mutation_p.E442Q	NM_004454	NP_004445
TP63	8626	broad.mit.edu	37	3	189608707	189608707	+	Intron	SNP	C	T	T			2012-1342:2012-1313-T	g.chr3:189608707C>T	uc003fry.2	+						TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron	NM_003722	NP_003713
GAK	2580	broad.mit.edu	37	4	849893	849893	+	Intron	SNP	C	T	T			2012-1342:2012-1313-T	g.chr4:849893C>T	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
FGFR3	2261	broad.mit.edu	37	4	1807751	1807751	+	Intron	SNP	C	T	T			2012-1342:2012-1313-T	g.chr4:1807751C>T	uc003gdr.3	+						FGFR3_uc003gdu.2_Intron|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Intron	NM_000142	NP_000133
KIT	3815	broad.mit.edu	37	4	55561743	55561743	+	Missense_Mutation	SNP	G	A	A			2012-1342:2012-1313-T	g.chr4:55561743G>A	uc010igr.2	+	2	220	c.133G>A	c.(133-135)GAC>AAC	p.D45N	KIT_uc010igs.2_Missense_Mutation_p.D45N	NM_000222	NP_000213
FBXW7	55294	broad.mit.edu	37	4	153250961	153250961	+	Intron	SNP	G	C	C			2012-1342:2012-1313-T	g.chr4:153250961G>C	uc003ims.2	-						FBXW7_uc011cii.1_Intron|FBXW7_uc003imt.2_Intron|FBXW7_uc011cih.1_Intron|FBXW7_uc003imq.2_Intron|FBXW7_uc003imr.2_Intron	NM_033632	NP_361014
TRIO	7204	broad.mit.edu	37	5	14492600	14492600	+	Intron	SNP	G	A	A			2012-1342:2012-1313-T	g.chr5:14492600G>A	uc003jff.2	+						TRIO_uc003jfg.2_Intron	NM_007118	NP_009049
FAT2	2196	broad.mit.edu	37	5	150901603	150901603	+	Silent	SNP	G	C	C			2012-1342:2012-1313-T	g.chr5:150901603G>C	uc003lue.3	-	18	10564	c.10551C>G	c.(10549-10551)GTC>GTG	p.V3517V	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Silent_p.V210V	NM_001447	NP_001438
RANBP17	64901	broad.mit.edu	37	5	170722917	170722917	+	Missense_Mutation	SNP	G	T	T			2012-1342:2012-1313-T	g.chr5:170722917G>T	uc003mba.2	+	27	3085	c.3069G>T	c.(3067-3069)TTG>TTT	p.L1023F	RANBP17_uc003mbb.2_Missense_Mutation_p.L348F|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048
HLA-A	3105	broad.mit.edu	37	6	29911540	29911540	+	Intron	SNP	G	A	A			2012-1342:2012-1313-T	g.chr6:29911540G>A	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Intron|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_Intron	NM_002116	NP_002107
HLA-E	3133	broad.mit.edu	37	6	30457609	30457609	+	Silent	SNP	C	T	T			2012-1342:2012-1313-T	g.chr6:30457609C>T	uc003nqg.2	+	2	209	c.171C>T	c.(169-171)TTC>TTT	p.F57F	HLA-E_uc011dmg.1_RNA|HLA-E_uc011dmh.1_Silent_p.F98F	NM_005516	NP_005507
SYNE1	23345	broad.mit.edu	37	6	152523064	152523064	+	Missense_Mutation	SNP	T	A	A			2012-1342:2012-1313-T	g.chr6:152523064T>A	uc010kiw.2	-	127	23642	c.23040A>T	c.(23038-23040)AAA>AAT	p.K7680N	SYNE1_uc010kiv.2_Missense_Mutation_p.K2204N|SYNE1_uc003qos.3_Missense_Mutation_p.K2204N|SYNE1_uc003qot.3_Missense_Mutation_p.K7609N|SYNE1_uc003qou.3_Missense_Mutation_p.K7680N|SYNE1_uc003qor.3_Missense_Mutation_p.K580N	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169015226	169015226	+	Intron	SNP	C	T	T	rs10945527		2012-1342:2012-1313-T	g.chr6:169015226C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
PCLO	27445	broad.mit.edu	37	7	82546210	82546210	+	Intron	SNP	T	C	C			2012-1342:2012-1313-T	g.chr7:82546210T>C	uc003uhx.2	-						PCLO_uc003uhv.2_Intron|PCLO_uc010lec.2_Intron	NM_033026	NP_149015
ZNF804B	219578	broad.mit.edu	37	7	88388490	88388490	+	5'Flank	SNP	G	T	T			2012-1342:2012-1313-T	g.chr7:88388490G>T	uc011khi.1	+							NM_181646	NP_857597
ZFHX4	79776	broad.mit.edu	37	8	77761754	77761754	+	Missense_Mutation	SNP	C	G	G			2012-1342:2012-1313-T	g.chr8:77761754C>G	uc003yav.2	+	8	3904	c.3517C>G	c.(3517-3519)CAA>GAA	p.Q1173E	ZFHX4_uc003yau.1_Missense_Mutation_p.Q1218E|ZFHX4_uc003yaw.1_Missense_Mutation_p.Q1173E	NM_024721	NP_078997
PKHD1L1	93035	broad.mit.edu	37	8	110447418	110447418	+	Splice_Site	SNP	G	C	C			2012-1342:2012-1313-T	g.chr8:110447418G>C	uc003yne.2	+	29	3445	c.3341_splice	c.e29-1	p.E1114_splice		NM_177531	NP_803875
ZFP41	286128	broad.mit.edu	37	8	144342275	144342275	+	3'UTR	SNP	C	T	T			2012-1342:2012-1313-T	g.chr8:144342275C>T	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
PARP10	84875	broad.mit.edu	37	8	145055754	145055754	+	Intron	SNP	G	A	A			2012-1342:2012-1313-T	g.chr8:145055754G>A	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
PHKA2	5256	broad.mit.edu	37	X	18938109	18938109	+	Intron	SNP	T	C	C			2012-1342:2012-1313-T	g.chrX:18938109T>C	uc004cyv.3	-						PHKA2_uc004cyu.3_Intron	NM_000292	NP_000283
PHKA2	5256	broad.mit.edu	37	X	18947334	18947334	+	Intron	SNP	A	T	T			2012-1342:2012-1313-T	g.chrX:18947334A>T	uc004cyv.3	-						PHKA2_uc010nfg.1_5'Flank	NM_000292	NP_000283
FAAH2	158584	broad.mit.edu	37	X	57313086	57313086	+	5'Flank	SNP	C	G	G			2012-1342:2012-1313-T	g.chrX:57313086C>G	uc004dvc.2	+							NM_174912	NP_777572
GPR174	84636	broad.mit.edu	37	X	78427403	78427403	+	Missense_Mutation	SNP	G	A	A			2012-1342:2012-1313-T	g.chrX:78427403G>A	uc004edg.1	+	1	935	c.899G>A	c.(898-900)CGA>CAA	p.R300Q		NM_032553	NP_115942
HDX	139324	broad.mit.edu	37	X	83723520	83723520	+	Missense_Mutation	SNP	G	A	A			2012-1342:2012-1313-T	g.chrX:83723520G>A	uc004eek.1	-	3	1320	c.1211C>T	c.(1210-1212)TCA>TTA	p.S404L	HDX_uc011mqv.1_Missense_Mutation_p.S404L|HDX_uc004eel.1_Missense_Mutation_p.S346L	NM_144657	NP_653258
NOTCH2	4853	broad.mit.edu	37	1	120611554	120611555	+	Intron	DNP	TT	CG	CG	rs75248693;rs77254078		2012-1343:2012-1314-T	g.chr1:120611554_120611555TT>CG	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
USH2A	7399	broad.mit.edu	37	1	216074046	216074046	+	Intron	SNP	T	C	C			2012-1343:2012-1314-T	g.chr1:216074046T>C	uc001hku.1	-							NM_206933	NP_996816
SMYD3	64754	broad.mit.edu	37	1	246140201	246140201	+	Intron	SNP	G	A	A			2012-1343:2012-1314-T	g.chr1:246140201G>A	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
SMYD3	64754	broad.mit.edu	37	1	246140231	246140231	+	Intron	SNP	A	G	G			2012-1343:2012-1314-T	g.chr1:246140231A>G	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
GPR123	84435	broad.mit.edu	37	10	134891843	134891843	+	Intron	SNP	C	T	T			2012-1343:2012-1314-T	g.chr10:134891843C>T	uc001llw.2	+								
GPR123	84435	broad.mit.edu	37	10	134924928	134924928	+	Intron	SNP	A	G	G			2012-1343:2012-1314-T	g.chr10:134924928A>G	uc001llx.3	+						GPR123_uc001llw.2_Intron	NM_001083909	NP_001077378
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		2012-1343:2012-1314-T	g.chr12:25398284C>T	uc001rgp.1	-	2	216	c.35G>A	c.(34-36)GGT>GAT	p.G12D	KRAS_uc001rgq.1_Missense_Mutation_p.G12D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524
GALNT9	50614	broad.mit.edu	37	12	132880856	132880856	+	Intron	SNP	C	G	G			2012-1343:2012-1314-T	g.chr12:132880856C>G	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
ATP11A	23250	broad.mit.edu	37	13	113527587	113527587	+	Intron	SNP	T	C	C			2012-1343:2012-1314-T	g.chr13:113527587T>C	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc010ago.2_Intron	NM_015205	NP_056020
RIN3	79890	broad.mit.edu	37	14	93106239	93106239	+	Intron	SNP	G	A	A			2012-1343:2012-1314-T	g.chr14:93106239G>A	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
TRAF3	7187	broad.mit.edu	37	14	103336517	103336517	+	Intron	SNP	G	A	A			2012-1343:2012-1314-T	g.chr14:103336517G>A	uc001ymc.1	+						TRAF3_uc001yme.1_Intron|TRAF3_uc001ymd.1_Intron|TRAF3_uc010txy.1_Intron	NM_145725	NP_663777
SECTM1	6398	broad.mit.edu	37	17	80291475	80291475	+	Intron	SNP	G	A	A	rs59734194	by1000genomes	2012-1343:2012-1314-T	g.chr17:80291475G>A	uc002keo.2	-						SECTM1_uc002kep.2_Intron	NM_003004	NP_002995
PIAS4	51588	broad.mit.edu	37	19	4011859	4011859	+	Intron	SNP	T	G	G			2012-1343:2012-1314-T	g.chr19:4011859T>G	uc002lzg.2	+							NM_015897	NP_056981
SNTG2	54221	broad.mit.edu	37	2	1163611	1163611	+	Intron	SNP	C	T	T			2012-1343:2012-1314-T	g.chr2:1163611C>T	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
TTN	7273	broad.mit.edu	37	2	179444717	179444717	+	Missense_Mutation	SNP	C	G	G			2012-1343:2012-1314-T	g.chr2:179444717C>G	uc010zfg.1	-	267	59817	c.59593G>C	c.(59593-59595)GAG>CAG	p.E19865Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E13560Q|TTN_uc010zfi.1_Missense_Mutation_p.E13493Q|TTN_uc010zfj.1_Missense_Mutation_p.E13368Q|uc002umv.1_3'UTR	NM_133378	NP_596869
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		2012-1343:2012-1314-T	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209
MUC4	4585	broad.mit.edu	37	3	195502489	195502489	+	Intron	SNP	A	C	C	rs71977427		2012-1343:2012-1314-T	g.chr3:195502489A>C	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FAM134B	54463	broad.mit.edu	37	5	16535761	16535761	+	Intron	SNP	C	T	T			2012-1343:2012-1314-T	g.chr5:16535761C>T	uc003jfs.2	-							NM_001034850	NP_001030022
RASA1	5921	broad.mit.edu	37	5	86672416	86672416	+	Intron	SNP	G	A	A			2012-1343:2012-1314-T	g.chr5:86672416G>A	uc003kiw.2	+						RASA1_uc010jav.2_Intron|RASA1_uc003kix.2_Intron|RASA1_uc011ctv.1_Intron|RASA1_uc011ctw.1_Intron|RASA1_uc010jaw.2_Intron	NM_002890	NP_002881
ADAMTS2	9509	broad.mit.edu	37	5	178561750	178561750	+	Intron	SNP	C	T	T			2012-1343:2012-1314-T	g.chr5:178561750C>T	uc003mjw.2	-							NM_014244	NP_055059
SMOC2	64094	broad.mit.edu	37	6	168939041	168939041	+	Intron	SNP	T	G	G			2012-1343:2012-1314-T	g.chr6:168939041T>G	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
PRKAR1B	5575	broad.mit.edu	37	7	628234	628234	+	Intron	SNP	G	A	A			2012-1343:2012-1314-T	g.chr7:628234G>A	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
PRKAR1B	5575	broad.mit.edu	37	7	628237	628237	+	Intron	SNP	G	A	A			2012-1343:2012-1314-T	g.chr7:628237G>A	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
PRKAR1B	5575	broad.mit.edu	37	7	628240	628240	+	Intron	SNP	A	G	G	rs28687262		2012-1343:2012-1314-T	g.chr7:628240A>G	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
ZFP41	286128	broad.mit.edu	37	8	144342202	144342202	+	3'UTR	SNP	G	C	C			2012-1343:2012-1314-T	g.chr8:144342202G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
HDX	139324	broad.mit.edu	37	X	83757817	83757817	+	5'Flank	SNP	G	A	A	rs2294339	by1000genomes	2012-1343:2012-1314-T	g.chrX:83757817G>A	uc004eek.1	-						HDX_uc011mqv.1_5'Flank|HDX_uc004eel.1_5'Flank	NM_144657	NP_653258
SH3RF3	344558	broad.mit.edu	37	2	109815960	109815960	+	Intron	SNP	G	A	A			2012-1344:2012-1315-T	g.chr2:109815960G>A	uc010ywt.1	+							NM_001099289	NP_001092759
FBLN7	129804	broad.mit.edu	37	2	112897409	112897409	+	Intron	SNP	T	C	C			2012-1344:2012-1315-T	g.chr2:112897409T>C	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
C20orf26	26074	broad.mit.edu	37	20	20337827	20337827	+	Intron	SNP	T	G	G			2012-1344:2012-1315-T	g.chr20:20337827T>G	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
DSCAM	1826	broad.mit.edu	37	21	41741260	41741260	+	Intron	SNP	C	T	T			2012-1344:2012-1315-T	g.chr21:41741260C>T	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
HSCB	150274	broad.mit.edu	37	22	29138090	29138090	+	Missense_Mutation	SNP	C	T	T			2012-1344:2012-1315-T	g.chr22:29138090C>T	uc003aea.2	+	1	48	c.7C>T	c.(7-9)CGG>TGG	p.R3W	CHEK2_uc003adt.1_5'Flank|CHEK2_uc003adu.1_5'Flank|CHEK2_uc003adv.1_5'Flank|CHEK2_uc003adw.1_5'Flank|CHEK2_uc003adx.1_5'Flank|CHEK2_uc003ady.1_5'Flank|CHEK2_uc003adz.1_5'Flank	NM_172002	NP_741999
TP63	8626	broad.mit.edu	37	3	189582249	189582249	+	Intron	SNP	G	A	A	rs2276792	byFrequency;by1000genomes	2012-1344:2012-1315-T	g.chr3:189582249G>A	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195498249	195498249	+	Intron	SNP	G	A	A	rs13087854		2012-1344:2012-1315-T	g.chr3:195498249G>A	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FAM53A	152877	broad.mit.edu	37	4	1672871	1672871	+	Intron	SNP	G	A	A	rs113105231		2012-1344:2012-1315-T	g.chr4:1672871G>A	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
UNC5C	8633	broad.mit.edu	37	4	96113823	96113823	+	Intron	SNP	A	C	C			2012-1344:2012-1315-T	g.chr4:96113823A>C	uc003htp.1	-						UNC5C_uc010ilc.1_Intron	NM_003728	NP_003719
ADAMTS12	81792	broad.mit.edu	37	5	33648906	33648906	+	Intron	SNP	G	C	C	rs6870538	by1000genomes	2012-1344:2012-1315-T	g.chr5:33648906G>C	uc003jia.1	-						ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217
HLA-B	3106	broad.mit.edu	37	6	31323838	31323838	+	Intron	SNP	C	G	G	rs2596494	byFrequency;by1000genomes	2012-1344:2012-1315-T	g.chr6:31323838C>G	uc003nth.2	-						HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Intron|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_RNA|HLA-B_uc010jso.2_3'UTR	NM_005514	NP_005505
PRDM16	63976	broad.mit.edu	37	1	3296494	3296494	+	Intron	SNP	G	A	A			2012-1347:2012-1316-T	g.chr1:3296494G>A	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
MACF1	23499	broad.mit.edu	37	1	39802251	39802251	+	Nonsense_Mutation	SNP	C	T	T			2012-1347:2012-1316-T	g.chr1:39802251C>T	uc010oiu.1	+	1	5442	c.5311C>T	c.(5311-5313)CAA>TAA	p.Q1771*	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033
PIK3R3	8503	broad.mit.edu	37	1	46511830	46511830	+	Intron	SNP	C	T	T			2012-1347:2012-1316-T	g.chr1:46511830C>T	uc001cpb.3	-						PIK3R3_uc009vyb.2_Intron|PIK3R3_uc009vyc.2_Intron|PIK3R3_uc001cpc.3_Intron|PIK3R3_uc010olw.1_Intron|PIK3R3_uc010olv.1_Intron	NM_003629	NP_003620
NOTCH2	4853	broad.mit.edu	37	1	120611555	120611555	+	Intron	SNP	T	G	G	rs77254078		2012-1347:2012-1316-T	g.chr1:120611555T>G	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
ADARB2	105	broad.mit.edu	37	10	1369881	1369881	+	Intron	SNP	A	C	C			2012-1347:2012-1316-T	g.chr10:1369881A>C	uc009xhq.2	-							NM_018702	NP_061172
KNDC1	85442	broad.mit.edu	37	10	134998772	134998772	+	Intron	SNP	G	C	C	rs111954081		2012-1347:2012-1316-T	g.chr10:134998772G>C	uc001llz.1	+						KNDC1_uc001lma.1_Intron	NM_152643	NP_689856
AHNAK	79026	broad.mit.edu	37	11	62292080	62292080	+	Missense_Mutation	SNP	T	C	C			2012-1347:2012-1316-T	g.chr11:62292080T>C	uc001ntl.2	-	5	10109	c.9809A>G	c.(9808-9810)CAT>CGT	p.H3270R	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
MTA2	9219	broad.mit.edu	37	11	62361211	62361211	+	3'UTR	SNP	C	T	T			2012-1347:2012-1316-T	g.chr11:62361211C>T	uc001ntq.1	-	18					TUT1_uc001nto.2_5'Flank|MTA2_uc010rlx.1_3'UTR	NM_004739	NP_004730
VWA5A	4013	broad.mit.edu	37	11	124015999	124015999	+	Missense_Mutation	SNP	A	T	T			2012-1347:2012-1316-T	g.chr11:124015999A>T	uc001pzu.2	+	18	2419	c.2210A>T	c.(2209-2211)AAT>ATT	p.N737I	VWA5A_uc001pzt.2_Missense_Mutation_p.N737I	NM_001130142	NP_001123614
SLC7A1	6541	broad.mit.edu	37	13	30133348	30133348	+	Intron	SNP	G	C	C			2012-1347:2012-1316-T	g.chr13:30133348G>C	uc001uso.2	-							NM_003045	NP_003036
SLC7A1	6541	broad.mit.edu	37	13	30133409	30133409	+	Intron	SNP	G	C	C			2012-1347:2012-1316-T	g.chr13:30133409G>C	uc001uso.2	-							NM_003045	NP_003036
F7	2155	broad.mit.edu	37	13	113762032	113762032	+	Intron	SNP	C	A	A			2012-1347:2012-1316-T	g.chr13:113762032C>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113762508	113762508	+	Intron	SNP	C	T	T			2012-1347:2012-1316-T	g.chr13:113762508C>T	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
PROZ	8858	broad.mit.edu	37	13	113816561	113816561	+	Intron	SNP	C	T	T			2012-1347:2012-1316-T	g.chr13:113816561C>T	uc001vta.1	+						PROZ_uc010agr.1_Intron	NM_003891	NP_003882
NRXN3	9369	broad.mit.edu	37	14	79723863	79723863	+	Intron	SNP	G	A	A			2012-1347:2012-1316-T	g.chr14:79723863G>A	uc001xun.2	+						NRXN3_uc001xum.1_Intron	NM_004796	NP_004787
ANXA2	302	broad.mit.edu	37	15	60642124	60642124	+	Intron	SNP	G	A	A			2012-1347:2012-1316-T	g.chr15:60642124G>A	uc002agn.2	-						ANXA2_uc002agk.2_Intron|ANXA2_uc002agl.2_Intron|ANXA2_uc002agm.2_Intron|ANXA2_uc010uhd.1_Intron	NM_001136015	NP_001129487
P2RX5	5026	broad.mit.edu	37	17	3583693	3583693	+	Intron	SNP	A	G	G	rs145451602	by1000genomes	2012-1347:2012-1316-T	g.chr17:3583693A>G	uc002fwi.2	-						P2RX5_uc002fwd.2_Intron|P2RX5_uc002fwh.1_Intron|P2RX5_uc010vrx.1_Intron|P2RX5_uc002fwj.2_Intron|P2RX5_uc002fwk.2_Intron|P2RX5_uc002fwl.2_Intron	NM_002561	NP_002552
TP53	7157	broad.mit.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	rs28934578		2012-1347:2012-1316-T	g.chr17:7578406C>T	uc002gim.2	-	5	718	c.524G>A	c.(523-525)CGC>CAC	p.R175H	TP53_uc002gig.1_Missense_Mutation_p.R175H|TP53_uc002gih.2_Missense_Mutation_p.R175H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R43H|TP53_uc010cng.1_Missense_Mutation_p.R43H|TP53_uc002gii.1_Missense_Mutation_p.R43H|TP53_uc010cnh.1_Missense_Mutation_p.R175H|TP53_uc010cni.1_Missense_Mutation_p.R175H|TP53_uc002gij.2_Missense_Mutation_p.R175H|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R82H|TP53_uc002gio.2_Missense_Mutation_p.R43H|TP53_uc010vug.1_Missense_Mutation_p.R136H	NM_001126112	NP_001119584
ABCA6	23460	broad.mit.edu	37	17	67099063	67099063	+	Missense_Mutation	SNP	T	C	C			2012-1347:2012-1316-T	g.chr17:67099063T>C	uc002jhw.1	-	21	2962	c.2787A>G	c.(2785-2787)ATA>ATG	p.I929M		NM_080284	NP_525023
MBP	4155	broad.mit.edu	37	18	74748685	74748685	+	Intron	SNP	C	T	T			2012-1347:2012-1316-T	g.chr18:74748685C>T	uc010xfd.1	-						MBP_uc002lmr.2_Intron	NM_001025101	NP_001020272
SMARCA4	6597	broad.mit.edu	37	19	11105550	11105550	+	Missense_Mutation	SNP	A	G	G			2012-1347:2012-1316-T	g.chr19:11105550A>G	uc002mqf.3	+	9	1750	c.1466A>G	c.(1465-1467)TAT>TGT	p.Y489C	SMARCA4_uc010dxp.2_Missense_Mutation_p.Y489C|SMARCA4_uc010dxo.2_Missense_Mutation_p.Y489C|SMARCA4_uc002mqg.1_Missense_Mutation_p.Y489C|SMARCA4_uc010dxq.2_Missense_Mutation_p.Y489C|SMARCA4_uc010dxr.2_Missense_Mutation_p.Y489C|SMARCA4_uc002mqj.3_Missense_Mutation_p.Y489C|SMARCA4_uc010dxs.2_Missense_Mutation_p.Y489C|SMARCA4_uc002mqe.2_Missense_Mutation_p.Y489C	NM_003072	NP_003063
NLRP11	204801	broad.mit.edu	37	19	56300357	56300357	+	Intron	SNP	G	T	T			2012-1347:2012-1316-T	g.chr19:56300357G>T	uc010ygf.1	-						NLRP11_uc002qlz.2_Intron|NLRP11_uc002qmb.2_Intron|NLRP11_uc002qmc.2_Intron	NM_145007	NP_659444
ZNF787	126208	broad.mit.edu	37	19	56617322	56617322	+	Intron	SNP	C	G	G			2012-1347:2012-1316-T	g.chr19:56617322C>G	uc010eth.1	-						ZNF787_uc002qml.1_Intron	NM_001002836	NP_001002836
RMND5A	64795	broad.mit.edu	37	2	87644396	87644396	+	Intron	SNP	G	A	A			2012-1347:2012-1316-T	g.chr2:87644396G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645311	87645311	+	Intron	SNP	T	A	A	rs147712184	by1000genomes	2012-1347:2012-1316-T	g.chr2:87645311T>A	uc002srs.3	+								
BAGE2	85319	broad.mit.edu	37	21	11040737	11040737	+	Intron	SNP	G	A	A			2012-1347:2012-1316-T	g.chr21:11040737G>A	uc002yit.1	-						TPTE_uc002yis.1_5'Flank	NM_182482	NP_872288
COL18A1	80781	broad.mit.edu	37	21	46863006	46863006	+	Intron	SNP	A	G	G			2012-1347:2012-1316-T	g.chr21:46863006A>G	uc002zhg.2	+							NM_130445	NP_569712
TNK2	10188	broad.mit.edu	37	3	195597778	195597778	+	Intron	SNP	C	A	A			2012-1347:2012-1316-T	g.chr3:195597778C>A	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
GAK	2580	broad.mit.edu	37	4	907739	907739	+	Intron	SNP	C	T	T	rs113111386		2012-1347:2012-1316-T	g.chr4:907739C>T	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_Intron|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	907759	907759	+	Intron	SNP	G	A	A			2012-1347:2012-1316-T	g.chr4:907759G>A	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_Intron|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246
INPP4B	8821	broad.mit.edu	37	4	143767288	143767288	+	Intron	SNP	G	T	T	rs6846609	by1000genomes	2012-1347:2012-1316-T	g.chr4:143767288G>T	uc003iix.3	-						INPP4B_uc003iiw.3_Intron	NM_003866	NP_003857
SORBS2	8470	broad.mit.edu	37	4	186717994	186717994	+	Intron	SNP	G	A	A			2012-1347:2012-1316-T	g.chr4:186717994G>A	uc003iyl.2	-						SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Intron|SORBS2_uc011cky.1_Intron|SORBS2_uc003iyp.2_Intron	NM_021069	NP_066547
HIST1H3D	8351	broad.mit.edu	37	6	26199598	26199598	+	5'Flank	SNP	A	G	G			2012-1347:2012-1316-T	g.chr6:26199598A>G	uc003ngv.2	-						HIST1H2AD_uc003ngw.2_5'Flank|HIST1H2BF_uc003ngx.2_5'Flank	NM_003530	NP_003521
HLA-B	3106	broad.mit.edu	37	6	31239869	31239869	+	Intron	SNP	T	C	C	rs76486597		2012-1347:2012-1316-T	g.chr6:31239869T>C	uc003ntf.2	-						HLA-C_uc011dnj.1_5'Flank|HLA-C_uc003nsx.2_5'Flank|HLA-C_uc003nsy.2_5'Flank|HLA-C_uc003nsz.2_5'Flank|HLA-C_uc010jsl.2_5'Flank|HLA-C_uc003nta.2_5'Flank|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_5'Flank		
HLA-B	3106	broad.mit.edu	37	6	31323838	31323838	+	Intron	SNP	C	G	G	rs2596494	byFrequency;by1000genomes	2012-1347:2012-1316-T	g.chr6:31323838C>G	uc003nth.2	-						HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Intron|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_RNA|HLA-B_uc010jso.2_3'UTR	NM_005514	NP_005505
PIK3CG	5294	broad.mit.edu	37	7	106506178	106506178	+	Intron	SNP	C	T	T			2012-1347:2012-1316-T	g.chr7:106506178C>T	uc003vdv.3	+						PIK3CG_uc003vdu.2_Intron|PIK3CG_uc003vdw.2_5'UTR	NM_002649	NP_002640
DPYS	1807	broad.mit.edu	37	8	105459793	105459793	+	Intron	SNP	C	A	A	rs7821992	by1000genomes	2012-1347:2012-1316-T	g.chr8:105459793C>A	uc003yly.3	-							NM_001385	NP_001376
NOTCH1	4851	broad.mit.edu	37	9	139411880	139411880	+	Intron	SNP	G	A	A	rs9411254	by1000genomes	2012-1347:2012-1316-T	g.chr9:139411880G>A	uc004chz.2	-							NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139412744	139412744	+	Missense_Mutation	SNP	C	T	T			2012-1347:2012-1316-T	g.chr9:139412744C>T	uc004chz.2	-	7	1100	c.1100G>A	c.(1099-1101)GGT>GAT	p.G367D		NM_017617	NP_060087
ABCA4	24	broad.mit.edu	37	1	94463633	94463633	+	Silent	SNP	G	A	A			2012-1348:2012-1317-T	g.chr1:94463633G>A	uc001dqh.2	-	48	6617	c.6513C>T	c.(6511-6513)ATC>ATT	p.I2171I		NM_000350	NP_000341
COL11A1	1301	broad.mit.edu	37	1	103352519	103352519	+	Missense_Mutation	SNP	T	C	C			2012-1348:2012-1317-T	g.chr1:103352519T>C	uc001dul.2	-	63	5020	c.4702A>G	c.(4702-4704)AAT>GAT	p.N1568D	COL11A1_uc001duk.2_Missense_Mutation_p.N764D|COL11A1_uc001dum.2_Missense_Mutation_p.N1580D|COL11A1_uc001dun.2_Missense_Mutation_p.N1529D|COL11A1_uc009weh.2_Missense_Mutation_p.N1452D	NM_001854	NP_001845
ASH1L	55870	broad.mit.edu	37	1	155449638	155449638	+	Nonsense_Mutation	SNP	G	C	C			2012-1348:2012-1317-T	g.chr1:155449638G>C	uc009wqq.2	-	3	3503	c.3023C>G	c.(3022-3024)TCA>TGA	p.S1008*	ASH1L_uc001fkt.2_Nonsense_Mutation_p.S1008*|ASH1L_uc009wqr.1_Nonsense_Mutation_p.S1008*	NM_018489	NP_060959
NOS1AP	9722	broad.mit.edu	37	1	162325192	162325192	+	Intron	SNP	G	A	A			2012-1348:2012-1317-T	g.chr1:162325192G>A	uc001gbv.2	+						NOS1AP_uc010pkr.1_Intron|NOS1AP_uc010pks.1_Intron|NOS1AP_uc001gbw.2_Intron	NM_014697	NP_055512
USH2A	7399	broad.mit.edu	37	1	215853372	215853372	+	Intron	SNP	C	G	G			2012-1348:2012-1317-T	g.chr1:215853372C>G	uc001hku.1	-							NM_206933	NP_996816
ADARB2	105	broad.mit.edu	37	10	1370096	1370096	+	Intron	SNP	C	G	G	rs12413294	by1000genomes	2012-1348:2012-1317-T	g.chr10:1370096C>G	uc009xhq.2	-							NM_018702	NP_061172
NRAP	4892	broad.mit.edu	37	10	115373928	115373928	+	Intron	SNP	C	T	T			2012-1348:2012-1317-T	g.chr10:115373928C>T	uc001laj.2	-						NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Intron|NRAP_uc001lal.3_Intron	NM_198060	NP_932326
OR51S1	119692	broad.mit.edu	37	11	4869944	4869944	+	Silent	SNP	C	A	A			2012-1348:2012-1317-T	g.chr11:4869944C>A	uc010qyo.1	-	1	495	c.495G>T	c.(493-495)CTG>CTT	p.L165L		NM_001004758	NP_001004758
TSPAN9	10867	broad.mit.edu	37	12	3377787	3377787	+	Intron	SNP	C	T	T			2012-1348:2012-1317-T	g.chr12:3377787C>T	uc001qlp.2	+							NM_006675	NP_006666
KRAS	3845	broad.mit.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	T	T	rs112445441		2012-1348:2012-1317-T	g.chr12:25398281C>T	uc001rgp.1	-	2	219	c.38G>A	c.(37-39)GGC>GAC	p.G13D	KRAS_uc001rgq.1_Missense_Mutation_p.G13D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524
LRRK2	120892	broad.mit.edu	37	12	40692188	40692188	+	Silent	SNP	G	T	T			2012-1348:2012-1317-T	g.chr12:40692188G>T	uc001rmg.3	+	24	3361	c.3240G>T	c.(3238-3240)GTG>GTT	p.V1080V	LRRK2_uc001rmh.1_Silent_p.V702V|LRRK2_uc009zjw.2_5'UTR	NM_198578	NP_940980
MLL2	8085	broad.mit.edu	37	12	49431790	49431790	+	Nonsense_Mutation	SNP	C	A	A			2012-1348:2012-1317-T	g.chr12:49431790C>A	uc001rta.3	-	34	9349	c.9349G>T	c.(9349-9351)GAG>TAG	p.E3117*		NM_003482	NP_003473
RARG	5916	broad.mit.edu	37	12	53608378	53608378	+	Missense_Mutation	SNP	T	A	A			2012-1348:2012-1317-T	g.chr12:53608378T>A	uc001sce.2	-	6	973	c.488A>T	c.(487-489)GAC>GTC	p.D163V	RARG_uc001scd.2_Missense_Mutation_p.D152V|RARG_uc010sob.1_Missense_Mutation_p.D141V|RARG_uc001scf.2_Missense_Mutation_p.D163V|RARG_uc001scg.2_Missense_Mutation_p.D91V|RARG_uc010soc.1_Missense_Mutation_p.D42V|RARG_uc010sod.1_Missense_Mutation_p.D200V	NM_000966	NP_000957
TFDP1	7027	broad.mit.edu	37	13	114271874	114271874	+	Intron	SNP	A	G	G			2012-1348:2012-1317-T	g.chr13:114271874A>G	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
DICER1	23405	broad.mit.edu	37	14	95595663	95595663	+	Intron	SNP	T	C	C	rs116217403	by1000genomes	2012-1348:2012-1317-T	g.chr14:95595663T>C	uc001ydw.2	-						DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron	NM_030621	NP_085124
DICER1	23405	broad.mit.edu	37	14	95598987	95598987	+	Missense_Mutation	SNP	G	A	A			2012-1348:2012-1317-T	g.chr14:95598987G>A	uc001ydw.2	-	4	354	c.172C>T	c.(172-174)CAT>TAT	p.H58Y	DICER1_uc001ydv.2_Missense_Mutation_p.H48Y|DICER1_uc001ydx.2_Missense_Mutation_p.H58Y|DICER1_uc001ydz.1_RNA|DICER1_uc001yea.1_RNA|DICER1_uc001yeb.1_RNA	NM_030621	NP_085124
BAIAP3	8938	broad.mit.edu	37	16	1390187	1390187	+	Intron	SNP	C	T	T			2012-1348:2012-1317-T	g.chr16:1390187C>T	uc002clk.1	+						BAIAP3_uc002clj.2_Intron|BAIAP3_uc010uuz.1_Intron|BAIAP3_uc010uva.1_Intron|BAIAP3_uc010uvb.1_Intron|BAIAP3_uc010uvc.1_Intron	NM_003933	NP_003924
ZFPM1	161882	broad.mit.edu	37	16	88567845	88567845	+	Intron	SNP	G	A	A			2012-1348:2012-1317-T	g.chr16:88567845G>A	uc002fkv.2	+							NM_153813	NP_722520
FANCA	2175	broad.mit.edu	37	16	89857868	89857868	+	Silent	SNP	C	A	A			2012-1348:2012-1317-T	g.chr16:89857868C>A	uc002fou.1	-	14	1344	c.1302G>T	c.(1300-1302)GTG>GTT	p.V434V	FANCA_uc010vpn.1_Silent_p.V434V	NM_000135	NP_000126
FANCA	2175	broad.mit.edu	37	16	89871773	89871774	+	Missense_Mutation	DNP	CG	AT	AT	rs144420697	byFrequency;by1000genomes	2012-1348:2012-1317-T	g.chr16:89871773_89871774CG>AT	uc002fou.1	-	7	665_666	c.623_624CG>AT	c.(622-624)TCG>TAT	p.S208Y	FANCA_uc010vpn.1_Missense_Mutation_p.S208Y|FANCA_uc002fov.1_Missense_Mutation_p.S191Y|FANCA_uc002fow.1_Missense_Mutation_p.S208Y|FANCA_uc002fox.1_Missense_Mutation_p.S208Y|FANCA_uc010ciu.1_Missense_Mutation_p.S176Y|FANCA_uc002foy.2_Missense_Mutation_p.S208Y	NM_000135	NP_000126
TP53	7157	broad.mit.edu	37	17	7577509	7577509	+	Missense_Mutation	SNP	C	T	T	rs121912652		2012-1348:2012-1317-T	g.chr17:7577509C>T	uc002gim.2	-	7	966	c.772G>A	c.(772-774)GAA>AAA	p.E258K	TP53_uc002gig.1_Missense_Mutation_p.E258K|TP53_uc002gih.2_Missense_Mutation_p.E258K|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.E126K|TP53_uc010cng.1_Missense_Mutation_p.E126K|TP53_uc002gii.1_Missense_Mutation_p.E126K|TP53_uc010cnh.1_Missense_Mutation_p.E258K|TP53_uc010cni.1_Missense_Mutation_p.E258K|TP53_uc002gij.2_Missense_Mutation_p.E258K|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.E165K|TP53_uc002gio.2_Missense_Mutation_p.E126K	NM_001126112	NP_001119584
MYH8	4626	broad.mit.edu	37	17	10304913	10304913	+	Missense_Mutation	SNP	G	T	T			2012-1348:2012-1317-T	g.chr17:10304913G>T	uc002gmm.2	-	23	2973	c.2878C>A	c.(2878-2880)CTT>ATT	p.L960I	uc002gml.1_Intron	NM_002472	NP_002463
MED1	5469	broad.mit.edu	37	17	37584078	37584078	+	Intron	SNP	C	T	T			2012-1348:2012-1317-T	g.chr17:37584078C>T	uc002hrv.3	-						MED1_uc010wee.1_Intron|MED1_uc002hru.2_Intron	NM_004774	NP_004765
PHLPP1	23239	broad.mit.edu	37	18	60645786	60645786	+	Missense_Mutation	SNP	G	A	A			2012-1348:2012-1317-T	g.chr18:60645786G>A	uc002lis.2	+	18	2918	c.2740G>A	c.(2740-2742)GAG>AAG	p.E914K		NM_194449	NP_919431
SFRS14	10147	broad.mit.edu	37	19	19136438	19136438	+	Missense_Mutation	SNP	C	A	A			2012-1348:2012-1317-T	g.chr19:19136438C>A	uc002nkx.2	-	3	865	c.719G>T	c.(718-720)GGT>GTT	p.G240V	SFRS14_uc002nkz.1_Missense_Mutation_p.G254V|SFRS14_uc002nla.1_Missense_Mutation_p.G240V|SFRS14_uc002nlb.2_Missense_Mutation_p.G240V|SFRS14_uc010xqk.1_Intron	NM_014884	NP_055699
ALLC	55821	broad.mit.edu	37	2	3720294	3720294	+	Intron	SNP	T	C	C			2012-1348:2012-1317-T	g.chr2:3720294T>C	uc010ewt.2	+							NM_018436	NP_060906
LRRTM1	347730	broad.mit.edu	37	2	80530526	80530526	+	Missense_Mutation	SNP	C	T	T			2012-1348:2012-1317-T	g.chr2:80530526C>T	uc002sok.1	-	2	689	c.419G>A	c.(418-420)CGC>CAC	p.R140H	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161
LRP1B	53353	broad.mit.edu	37	2	141607804	141607804	+	Silent	SNP	G	T	T			2012-1348:2012-1317-T	g.chr2:141607804G>T	uc002tvj.1	-	29	5778	c.4806C>A	c.(4804-4806)GTC>GTA	p.V1602V	LRP1B_uc010fnl.1_Silent_p.V784V	NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	142889620	142889620	+	5'Flank	SNP	T	C	C			2012-1348:2012-1317-T	g.chr2:142889620T>C	uc002tvj.1	-						LRP1B_uc010fnl.1_5'Flank	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179616749	179616749	+	Nonsense_Mutation	SNP	C	A	A			2012-1348:2012-1317-T	g.chr2:179616749C>A	uc002unb.2	-	46	10602	c.10378G>T	c.(10378-10380)GAA>TAA	p.E3460*	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870
PLCB1	23236	broad.mit.edu	37	20	8130937	8130937	+	Intron	SNP	C	G	G			2012-1348:2012-1317-T	g.chr20:8130937C>G	uc002wnb.2	+						PLCB1_uc010zrb.1_Intron|PLCB1_uc010gbv.1_Intron|PLCB1_uc002wmz.1_Intron|PLCB1_uc002wna.2_Intron	NM_015192	NP_056007
PAK7	57144	broad.mit.edu	37	20	9538372	9538372	+	Silent	SNP	T	C	C			2012-1348:2012-1317-T	g.chr20:9538372T>C	uc002wnl.2	-	8	2171	c.1626A>G	c.(1624-1626)GAA>GAG	p.E542E	PAK7_uc002wnk.2_Silent_p.E542E|PAK7_uc002wnj.2_Silent_p.E542E|PAK7_uc010gby.1_Silent_p.E542E	NM_020341	NP_065074
BAGE2	85319	broad.mit.edu	37	21	11058479	11058479	+	Intron	SNP	A	G	G			2012-1348:2012-1317-T	g.chr21:11058479A>G	uc002yit.1	-						BAGE_uc002yiw.1_Intron	NM_182482	NP_872288
PRDM15	63977	broad.mit.edu	37	21	43226553	43226553	+	Intron	SNP	A	G	G			2012-1348:2012-1317-T	g.chr21:43226553A>G	uc002yzq.1	-						PRDM15_uc002yzo.2_Intron|PRDM15_uc002yzp.2_Intron|PRDM15_uc002yzr.1_Intron	NM_022115	NP_071398
FAM19A5	25817	broad.mit.edu	37	22	48925394	48925394	+	Intron	SNP	T	G	G			2012-1348:2012-1317-T	g.chr22:48925394T>G	uc003bim.3	+							NM_001082967	NP_001076436
CCR5	1234	broad.mit.edu	37	3	46415255	46415255	+	Missense_Mutation	SNP	A	G	G	rs150592242	by1000genomes	2012-1348:2012-1317-T	g.chr3:46415255A>G	uc003cpo.3	+	3	984	c.862A>G	c.(862-864)ACG>GCG	p.T288A	CCR5_uc010hjd.2_Missense_Mutation_p.T288A	NM_001100168	NP_001093638
EPHA3	2042	broad.mit.edu	37	3	89156461	89156461	+	5'Flank	SNP	C	G	G			2012-1348:2012-1317-T	g.chr3:89156461C>G	uc003dqy.2	+						EPHA3_uc003dqx.1_5'Flank|EPHA3_uc010hon.1_5'Flank	NM_005233	NP_005224
DPPA4	55211	broad.mit.edu	37	3	109047696	109047696	+	Intron	SNP	G	C	C			2012-1348:2012-1317-T	g.chr3:109047696G>C	uc003dxq.3	-						DPPA4_uc011bho.1_Intron	NM_018189	NP_060659
EPHB1	2047	broad.mit.edu	37	3	134898637	134898637	+	Intron	SNP	C	T	T			2012-1348:2012-1317-T	g.chr3:134898637C>T	uc003eqt.2	+						EPHB1_uc003equ.2_Intron	NM_004441	NP_004432
SI	6476	broad.mit.edu	37	3	164741456	164741456	+	Missense_Mutation	SNP	G	C	C	rs143631771	by1000genomes	2012-1348:2012-1317-T	g.chr3:164741456G>C	uc003fei.2	-	26	3063	c.3001C>G	c.(3001-3003)CTA>GTA	p.L1001V		NM_001041	NP_001032
MUC4	4585	broad.mit.edu	37	3	195503210	195503210	+	Intron	SNP	C	G	G			2012-1348:2012-1317-T	g.chr3:195503210C>G	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
WHSC1	7468	broad.mit.edu	37	4	1961137	1961137	+	Intron	SNP	G	A	A	rs474235	by1000genomes	2012-1348:2012-1317-T	g.chr4:1961137G>A	uc003gdz.3	+						WHSC1_uc003geb.3_Intron|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_Intron|WHSC1_uc003gef.3_Intron|WHSC1_uc003gei.3_Intron|WHSC1_uc011bvh.1_Intron|WHSC1_uc010icf.2_Intron	NM_001042424	NP_001035889
FBXW7	55294	broad.mit.edu	37	4	153456102	153456102	+	5'UTR	SNP	A	G	G	rs1351903	by1000genomes	2012-1348:2012-1317-T	g.chr4:153456102A>G	uc003ims.2	-	1					FBXW7_uc011cii.1_5'UTR|FBXW7_uc003imt.2_5'UTR|FBXW7_uc003imu.2_5'UTR|uc003imv.2_5'Flank	NM_033632	NP_361014
CEP72	55722	broad.mit.edu	37	5	650654	650654	+	Intron	SNP	T	G	G			2012-1348:2012-1317-T	g.chr5:650654T>G	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1072045	1072045	+	Intron	SNP	C	T	T			2012-1348:2012-1317-T	g.chr5:1072045C>T	uc003jbu.2	-							NM_006598	NP_006589
DNAH5	1767	broad.mit.edu	37	5	13902133	13902133	+	Intron	SNP	G	C	C			2012-1348:2012-1317-T	g.chr5:13902133G>C	uc003jfd.2	-							NM_001369	NP_001360
PRDM9	56979	broad.mit.edu	37	5	23524459	23524459	+	Silent	SNP	C	A	A			2012-1348:2012-1317-T	g.chr5:23524459C>A	uc003jgo.2	+	10	1149	c.967C>A	c.(967-969)CGG>AGG	p.R323R		NM_020227	NP_064612
CDH9	1007	broad.mit.edu	37	5	26906868	26906868	+	Silent	SNP	T	A	A			2012-1348:2012-1317-T	g.chr5:26906868T>A	uc003jgs.1	-	4	772	c.603A>T	c.(601-603)ATA>ATT	p.I201I	CDH9_uc010iug.2_Silent_p.I201I	NM_016279	NP_057363
CDH9	1007	broad.mit.edu	37	5	26906899	26906899	+	Missense_Mutation	SNP	T	G	G			2012-1348:2012-1317-T	g.chr5:26906899T>G	uc003jgs.1	-	4	741	c.572A>C	c.(571-573)TAT>TCT	p.Y191S	CDH9_uc010iug.2_Missense_Mutation_p.Y191S	NM_016279	NP_057363
FAT2	2196	broad.mit.edu	37	5	150922433	150922433	+	Missense_Mutation	SNP	C	T	T			2012-1348:2012-1317-T	g.chr5:150922433C>T	uc003lue.3	-	9	8268	c.8255G>A	c.(8254-8256)AGG>AAG	p.R2752K	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438
HLA-F	3134	broad.mit.edu	37	6	29691397	29691397	+	Intron	SNP	G	A	A			2012-1348:2012-1317-T	g.chr6:29691397G>A	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_5'Flank	NM_018950	NP_061823
HLA-A	3105	broad.mit.edu	37	6	29913344	29913344	+	3'UTR	SNP	G	T	T	rs112720956		2012-1348:2012-1317-T	g.chr6:29913344G>T	uc003nol.2	+	8					HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003non.2_3'UTR|HLA-A_uc003noo.2_3'UTR|HLA-A_uc010jrr.2_3'UTR|HLA-A_uc003nom.2_3'UTR|HLA-A_uc011dmc.1_3'UTR|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
HLA-A	3105	broad.mit.edu	37	6	29913483	29913483	+	3'UTR	SNP	T	C	C	rs116198299	by1000genomes	2012-1348:2012-1317-T	g.chr6:29913483T>C	uc003nol.2	+	8					HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003non.2_3'UTR|HLA-A_uc003noo.2_3'UTR|HLA-A_uc010jrr.2_3'UTR|HLA-A_uc003nom.2_3'UTR|HLA-A_uc011dmc.1_3'UTR|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
HLA-C	3107	broad.mit.edu	37	6	31238632	31238632	+	Intron	SNP	C	T	T	rs17886924		2012-1348:2012-1317-T	g.chr6:31238632C>T	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Intron	NM_002117	NP_002108
SYNE1	23345	broad.mit.edu	37	6	152489294	152489294	+	Intron	SNP	T	C	C	rs998147	byFrequency;by1000genomes	2012-1348:2012-1317-T	g.chr6:152489294T>C	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169016341	169016341	+	Intron	SNP	G	T	T			2012-1348:2012-1317-T	g.chr6:169016341G>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169016344	169016344	+	Intron	SNP	G	A	A			2012-1348:2012-1317-T	g.chr6:169016344G>A	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
BAZ1B	9031	broad.mit.edu	37	7	72891657	72891657	+	Missense_Mutation	SNP	C	G	G			2012-1348:2012-1317-T	g.chr7:72891657C>G	uc003tyc.2	-	7	2479	c.2134G>C	c.(2134-2136)GAC>CAC	p.D712H		NM_032408	NP_115784
EPHA1	2041	broad.mit.edu	37	7	143088810	143088810	+	Missense_Mutation	SNP	A	T	T			2012-1348:2012-1317-T	g.chr7:143088810A>T	uc003wcz.2	-	17	2842	c.2755T>A	c.(2755-2757)TCT>ACT	p.S919T		NM_005232	NP_005223
UNC5D	137970	broad.mit.edu	37	8	35608213	35608213	+	Silent	SNP	C	T	T			2012-1348:2012-1317-T	g.chr8:35608213C>T	uc003xjr.1	+	13	2377	c.2049C>T	c.(2047-2049)ATC>ATT	p.I683I	UNC5D_uc003xjs.1_Silent_p.I678I|UNC5D_uc003xju.1_Silent_p.I259I	NM_080872	NP_543148
UBXN2B	137886	broad.mit.edu	37	8	59338187	59338187	+	Intron	SNP	C	T	T			2012-1348:2012-1317-T	g.chr8:59338187C>T	uc003xtl.2	+							NM_001077619	NP_001071087
PKHD1L1	93035	broad.mit.edu	37	8	110539166	110539167	+	Missense_Mutation	DNP	CT	AG	AG			2012-1348:2012-1317-T	g.chr8:110539166_110539167CT>AG	uc003yne.2	+	77	12742_12743	c.12638_12639CT>AG	c.(12637-12639)ACT>AAG	p.T4213K		NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113364897	113364897	+	Intron	SNP	T	A	A			2012-1348:2012-1317-T	g.chr8:113364897T>A	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113871474	113871474	+	Missense_Mutation	SNP	A	T	T			2012-1348:2012-1317-T	g.chr8:113871474A>T	uc003ynu.2	-	11	1814	c.1655T>A	c.(1654-1656)CTT>CAT	p.L552H	CSMD3_uc003ynt.2_Missense_Mutation_p.L512H|CSMD3_uc011lhx.1_Missense_Mutation_p.L448H	NM_198123	NP_937756
PLEC	5339	broad.mit.edu	37	8	144990637	144990637	+	Missense_Mutation	SNP	T	C	C			2012-1348:2012-1317-T	g.chr8:144990637T>C	uc003zaf.1	-	32	13933	c.13763A>G	c.(13762-13764)GAC>GGC	p.D4588G	PLEC_uc003zab.1_Missense_Mutation_p.D4451G|PLEC_uc003zac.1_Missense_Mutation_p.D4455G|PLEC_uc003zad.2_Missense_Mutation_p.D4451G|PLEC_uc003zae.1_Missense_Mutation_p.D4419G|PLEC_uc003zag.1_Missense_Mutation_p.D4429G|PLEC_uc003zah.2_Missense_Mutation_p.D4437G|PLEC_uc003zaj.2_Missense_Mutation_p.D4478G	NM_201380	NP_958782
PARP10	84875	broad.mit.edu	37	8	145055734	145055734	+	Intron	SNP	G	A	A			2012-1348:2012-1317-T	g.chr8:145055734G>A	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
TSC1	7248	broad.mit.edu	37	9	135779859	135779859	+	Intron	SNP	G	A	A			2012-1348:2012-1317-T	g.chr9:135779859G>A	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359
TSC1	7248	broad.mit.edu	37	9	135787749	135787749	+	Missense_Mutation	SNP	G	C	C			2012-1348:2012-1317-T	g.chr9:135787749G>C	uc004cca.2	-	9	1067	c.833C>G	c.(832-834)TCT>TGT	p.S278C	TSC1_uc004ccb.3_Missense_Mutation_p.S278C|TSC1_uc011mcq.1_Missense_Mutation_p.S227C|TSC1_uc011mcr.1_Missense_Mutation_p.S157C|TSC1_uc011mcs.1_Missense_Mutation_p.S157C|TSC1_uc004ccc.1_Missense_Mutation_p.S278C|TSC1_uc004ccd.2_Missense_Mutation_p.S278C|TSC1_uc004cce.1_Missense_Mutation_p.S278C	NM_000368	NP_000359
NOTCH1	4851	broad.mit.edu	37	9	139410589	139410589	+	Intron	SNP	A	G	G	rs4880099	by1000genomes	2012-1348:2012-1317-T	g.chr9:139410589A>G	uc004chz.2	-						NOTCH1_uc004cia.1_5'Flank	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139411880	139411880	+	Intron	SNP	G	A	A	rs9411254	by1000genomes	2012-1348:2012-1317-T	g.chr9:139411880G>A	uc004chz.2	-							NM_017617	NP_060087
HUWE1	10075	broad.mit.edu	37	X	53563550	53563550	+	Missense_Mutation	SNP	C	G	G			2012-1348:2012-1317-T	g.chrX:53563550C>G	uc004dsp.2	-	79	12618	c.12216G>C	c.(12214-12216)GAG>GAC	p.E4072D	HUWE1_uc004dsn.2_Missense_Mutation_p.E2880D	NM_031407	NP_113584
AGRN	375790	broad.mit.edu	37	1	966193	966193	+	Intron	SNP	A	G	G			2012-1349:2012-1312-T	g.chr1:966193A>G	uc001ack.1	+							NM_198576	NP_940978
PRKCZ	5590	broad.mit.edu	37	1	2055443	2055443	+	Intron	SNP	G	T	T			2012-1349:2012-1312-T	g.chr1:2055443G>T	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron	NM_002744	NP_002735
MEGF6	1953	broad.mit.edu	37	1	3500414	3500414	+	Intron	SNP	C	G	G	rs61762197		2012-1349:2012-1312-T	g.chr1:3500414C>G	uc001akl.2	-							NM_001409	NP_001400
MTOR	2475	broad.mit.edu	37	1	11190702	11190702	+	Missense_Mutation	SNP	T	G	G			2012-1349:2012-1312-T	g.chr1:11190702T>G	uc001asd.2	-	39	5618	c.5497A>C	c.(5497-5499)ACC>CCC	p.T1833P	MTOR_uc001asc.2_Missense_Mutation_p.T38P	NM_004958	NP_004949
MACF1	23499	broad.mit.edu	37	1	39826989	39826989	+	Intron	SNP	G	A	A			2012-1349:2012-1312-T	g.chr1:39826989G>A	uc010oiu.1	+						MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033
CDH23	64072	broad.mit.edu	37	10	73448824	73448824	+	Intron	SNP	G	T	T			2012-1349:2012-1312-T	g.chr10:73448824G>T	uc001jrx.3	+						CDH23_uc001jry.2_Intron|CDH23_uc001jrz.2_Intron	NM_022124	NP_071407
RIMBP2	23504	broad.mit.edu	37	12	131130663	131130663	+	Intron	SNP	A	T	T			2012-1349:2012-1312-T	g.chr12:131130663A>T	uc001uim.2	-								
RIMBP2	23504	broad.mit.edu	37	12	131130776	131130776	+	Intron	SNP	C	T	T			2012-1349:2012-1312-T	g.chr12:131130776C>T	uc001uim.2	-								
RIMBP2	23504	broad.mit.edu	37	12	131130819	131130819	+	Intron	SNP	A	T	T			2012-1349:2012-1312-T	g.chr12:131130819A>T	uc001uim.2	-								
RIMBP2	23504	broad.mit.edu	37	12	131130884	131130884	+	Intron	SNP	C	T	T			2012-1349:2012-1312-T	g.chr12:131130884C>T	uc001uim.2	-								
RIMBP2	23504	broad.mit.edu	37	12	131130886	131130886	+	Intron	SNP	C	G	G	rs111862178		2012-1349:2012-1312-T	g.chr12:131130886C>G	uc001uim.2	-								
CDADC1	81602	broad.mit.edu	37	13	49867337	49867337	+	3'UTR	SNP	T	C	C			2012-1349:2012-1312-T	g.chr13:49867337T>C	uc001vcu.2	+	10					CDADC1_uc010tgk.1_3'UTR|CDADC1_uc001vcv.2_RNA	NM_030911	NP_112173
ATP11A	23250	broad.mit.edu	37	13	113527294	113527294	+	Intron	SNP	G	A	A	rs4907466		2012-1349:2012-1312-T	g.chr13:113527294G>A	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc010ago.2_Intron	NM_015205	NP_056020
INO80	54617	broad.mit.edu	37	15	41324251	41324251	+	Intron	SNP	C	G	G	rs35308283	by1000genomes	2012-1349:2012-1312-T	g.chr15:41324251C>G	uc001zni.2	-						INO80_uc010ucu.1_Intron	NM_017553	NP_060023
LMF1	64788	broad.mit.edu	37	16	907600	907600	+	Intron	SNP	A	T	T			2012-1349:2012-1312-T	g.chr16:907600A>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908786	908786	+	Intron	SNP	A	T	T			2012-1349:2012-1312-T	g.chr16:908786A>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908833	908833	+	Intron	SNP	C	G	G			2012-1349:2012-1312-T	g.chr16:908833C>G	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908958	908958	+	Intron	SNP	G	C	C			2012-1349:2012-1312-T	g.chr16:908958G>C	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	909735	909735	+	Intron	SNP	A	G	G			2012-1349:2012-1312-T	g.chr16:909735A>G	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
PHKG2	5261	broad.mit.edu	37	16	30760548	30760548	+	Intron	SNP	T	G	G			2012-1349:2012-1312-T	g.chr16:30760548T>G	uc002dzk.1	+						PHKG2_uc002dzi.1_Intron|PHKG2_uc002dzj.1_Intron|PHKG2_uc002dzl.1_Intron	NM_000294	NP_000285
TBC1D3	729873	broad.mit.edu	37	17	36348743	36348743	+	Intron	SNP	G	A	A			2012-1349:2012-1312-T	g.chr17:36348743G>A	uc002hpr.2	-						TBC1D3_uc010wdl.1_5'Flank|TBC1D3_uc002hox.2_5'Flank|TBC1D3_uc010wdm.1_5'Flank|TBC1D3_uc002hpq.2_5'Flank|TBC1D3_uc010cvj.1_5'Flank|TBC1D3_uc010cvk.2_Intron|TBC1D3_uc002hpp.2_5'Flank|TBC1D3_uc010wdn.1_Intron	NM_001123391	NP_001116863
PRKCA	5578	broad.mit.edu	37	17	64794882	64794882	+	Intron	SNP	G	A	A			2012-1349:2012-1312-T	g.chr17:64794882G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64794927	64794927	+	Intron	SNP	G	A	A			2012-1349:2012-1312-T	g.chr17:64794927G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64794952	64794952	+	Intron	SNP	T	C	C			2012-1349:2012-1312-T	g.chr17:64794952T>C	uc002jfp.1	+							NM_002737	NP_002728
CABLES1	91768	broad.mit.edu	37	18	20798240	20798240	+	Intron	SNP	C	G	G	rs145683513	by1000genomes	2012-1349:2012-1312-T	g.chr18:20798240C>G	uc002kuc.2	+						C18orf45_uc010xaq.1_Intron|CABLES1_uc002kub.2_Intron|CABLES1_uc002kud.2_Intron	NM_001100619	NP_001094089
ATP9B	374868	broad.mit.edu	37	18	77088004	77088004	+	Intron	SNP	T	G	G			2012-1349:2012-1312-T	g.chr18:77088004T>G	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
SNTG2	54221	broad.mit.edu	37	2	960951	960951	+	Intron	SNP	T	C	C			2012-1349:2012-1312-T	g.chr2:960951T>C	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
PXDN	7837	broad.mit.edu	37	2	1714921	1714921	+	Intron	SNP	A	C	C			2012-1349:2012-1312-T	g.chr2:1714921A>C	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87623792	87623792	+	Intron	SNP	C	A	A			2012-1349:2012-1312-T	g.chr2:87623792C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644456	87644456	+	Intron	SNP	G	A	A			2012-1349:2012-1312-T	g.chr2:87644456G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87651716	87651716	+	Intron	SNP	G	C	C			2012-1349:2012-1312-T	g.chr2:87651716G>C	uc002srs.3	+								
DPP10	57628	broad.mit.edu	37	2	116196638	116196638	+	Intron	SNP	A	G	G			2012-1349:2012-1312-T	g.chr2:116196638A>G	uc002tla.1	+						DPP10_uc002tlb.1_Intron|DPP10_uc002tlc.1_Intron|DPP10_uc002tle.2_Intron|DPP10_uc002tlf.1_Intron	NM_020868	NP_065919
LRP1B	53353	broad.mit.edu	37	2	141460161	141460161	+	Intron	SNP	T	G	G			2012-1349:2012-1312-T	g.chr2:141460161T>G	uc002tvj.1	-							NM_018557	NP_061027
KIF1A	547	broad.mit.edu	37	2	241752316	241752316	+	Intron	SNP	G	A	A			2012-1349:2012-1312-T	g.chr2:241752316G>A	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
C20orf26	26074	broad.mit.edu	37	20	20336986	20336986	+	Intron	SNP	T	G	G			2012-1349:2012-1312-T	g.chr20:20336986T>G	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20337100	20337100	+	Intron	SNP	G	A	A			2012-1349:2012-1312-T	g.chr20:20337100G>A	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
TAF4	6874	broad.mit.edu	37	20	60561189	60561189	+	Intron	SNP	A	C	C			2012-1349:2012-1312-T	g.chr20:60561189A>C	uc002ybs.2	-							NM_003185	NP_003176
BAGE2	85319	broad.mit.edu	37	21	11085602	11085602	+	Intron	SNP	C	T	T			2012-1349:2012-1312-T	g.chr21:11085602C>T	uc002yit.1	-						BAGE_uc002yix.2_Intron	NM_182482	NP_872288
RAF1	5894	broad.mit.edu	37	3	12626582	12626582	+	Intron	SNP	T	C	C			2012-1349:2012-1312-T	g.chr3:12626582T>C	uc003bxf.3	-						RAF1_uc011aut.1_Intron|RAF1_uc011auu.1_Intron	NM_002880	NP_002871
BBX	56987	broad.mit.edu	37	3	107494978	107494978	+	Intron	SNP	C	T	T	rs9847666	by1000genomes	2012-1349:2012-1312-T	g.chr3:107494978C>T	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc003dwm.3_Intron|BBX_uc003dwo.3_Intron	NM_001142568	NP_001136040
TFRC	7037	broad.mit.edu	37	3	195800906	195800906	+	Missense_Mutation	SNP	T	C	C			2012-1349:2012-1312-T	g.chr3:195800906T>C	uc003fvz.3	-	4	612	c.329A>G	c.(328-330)GAG>GGG	p.E110G	TFRC_uc003fwa.3_Missense_Mutation_p.E110G|TFRC_uc010hzy.2_Missense_Mutation_p.E29G|TFRC_uc011btr.1_Intron	NM_003234	NP_003225
FGFR3	2261	broad.mit.edu	37	4	1803704	1803704	+	Silent	SNP	T	C	C	rs2234909	byFrequency;by1000genomes	2012-1349:2012-1312-T	g.chr4:1803704T>C	uc003gdr.3	+	7	1138	c.882T>C	c.(880-882)AAT>AAC	p.N294N	FGFR3_uc003gdu.2_Silent_p.N294N|FGFR3_uc003gds.3_Silent_p.N294N|FGFR3_uc003gdq.3_Silent_p.N294N|FGFR3_uc010icb.1_Intron|FGFR3_uc003gdt.1_Silent_p.N136N	NM_000142	NP_000133
NOP14	8602	broad.mit.edu	37	4	2947776	2947776	+	Intron	SNP	T	G	G			2012-1349:2012-1312-T	g.chr4:2947776T>G	uc003ggj.1	-						C4orf10_uc003gge.1_Intron|C4orf10_uc003ggh.2_Intron|C4orf10_uc003ggi.1_Intron|NOP14_uc010icp.2_Intron|NOP14_uc003ggk.3_Intron|NOP14_uc003ggl.2_Intron	NM_003703	NP_003694
CTNND2	1501	broad.mit.edu	37	5	11022914	11022914	+	Missense_Mutation	SNP	T	A	A			2012-1349:2012-1312-T	g.chr5:11022914T>A	uc003jfa.1	-	17	3111	c.2966A>T	c.(2965-2967)AAG>ATG	p.K989M	CTNND2_uc010itt.2_Missense_Mutation_p.K898M|CTNND2_uc011cmy.1_Missense_Mutation_p.K652M|CTNND2_uc011cmz.1_Missense_Mutation_p.K556M|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.K581M	NM_001332	NP_001323
BPHL	670	broad.mit.edu	37	6	3147062	3147062	+	Intron	SNP	G	A	A			2012-1349:2012-1312-T	g.chr6:3147062G>A	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
UNC93A	54346	broad.mit.edu	37	6	167709143	167709143	+	Intron	SNP	C	G	G			2012-1349:2012-1312-T	g.chr6:167709143C>G	uc003qvq.2	+						UNC93A_uc003qvr.2_Intron	NM_018974	NP_061847
TRRAP	8295	broad.mit.edu	37	7	98501021	98501021	+	Missense_Mutation	SNP	C	G	G			2012-1349:2012-1312-T	g.chr7:98501021C>G	uc003upp.2	+	12	1126	c.917C>G	c.(916-918)TCT>TGT	p.S306C	TRRAP_uc011kis.1_Missense_Mutation_p.S306C|TRRAP_uc003upr.2_5'UTR	NM_003496	NP_003487
MET	4233	broad.mit.edu	37	7	116371694	116371694	+	Intron	SNP	T	C	C			2012-1349:2012-1312-T	g.chr7:116371694T>C	uc003vij.2	+						MET_uc010lkh.2_Intron|MET_uc011knc.1_Intron|MET_uc011knd.1_Intron|MET_uc011kne.1_Intron|MET_uc011knf.1_Intron|MET_uc011kng.1_Intron|MET_uc011knh.1_Intron|MET_uc011kni.1_Intron|MET_uc011knj.1_Intron|MET_uc010lkg.2_Intron|MET_uc011kna.1_Intron|MET_uc011knb.1_Intron	NM_000245	NP_000236
PTPRN2	5799	broad.mit.edu	37	7	157846572	157846572	+	Intron	SNP	T	C	C			2012-1349:2012-1312-T	g.chr7:157846572T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157852014	157852014	+	Intron	SNP	A	G	G			2012-1349:2012-1312-T	g.chr7:157852014A>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158144672	158144672	+	Intron	SNP	C	G	G			2012-1349:2012-1312-T	g.chr7:158144672C>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158295585	158295585	+	Intron	SNP	C	T	T			2012-1349:2012-1312-T	g.chr7:158295585C>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158295677	158295677	+	Intron	SNP	C	A	A			2012-1349:2012-1312-T	g.chr7:158295677C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1779661	1779661	+	Intron	SNP	G	T	T	rs113395503		2012-1349:2012-1312-T	g.chr8:1779661G>T	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
CSMD3	114788	broad.mit.edu	37	8	114449346	114449346	+	5'Flank	SNP	T	A	A			2012-1349:2012-1312-T	g.chr8:114449346T>A	uc003ynu.2	-						CSMD3_uc011lhx.1_5'Flank|CSMD3_uc010mcx.1_5'Flank|CSMD3_uc003ynx.3_5'Flank	NM_198123	NP_937756
ZNF16	7564	broad.mit.edu	37	8	146172189	146172189	+	Intron	SNP	C	T	T			2012-1349:2012-1312-T	g.chr8:146172189C>T	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
ZNF16	7564	broad.mit.edu	37	8	146172560	146172560	+	Intron	SNP	C	G	G			2012-1349:2012-1312-T	g.chr8:146172560C>G	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
HUWE1	10075	broad.mit.edu	37	X	53644096	53644096	+	Missense_Mutation	SNP	G	T	T			2012-1349:2012-1312-T	g.chrX:53644096G>T	uc004dsp.2	-	21	2194	c.1792C>A	c.(1792-1794)CGT>AGT	p.R598S		NM_031407	NP_113584
PRDM16	63976	broad.mit.edu	37	1	3082189	3082189	+	Intron	SNP	G	T	T			2012-1351:2012-338-T	g.chr1:3082189G>T	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
EPHA2	1969	broad.mit.edu	37	1	16460339	16460339	+	Intron	SNP	G	A	A	rs6669624	by1000genomes	2012-1351:2012-338-T	g.chr1:16460339G>A	uc001aya.1	-							NM_004431	NP_004422
EPHA2	1969	broad.mit.edu	37	1	16460541	16460541	+	Intron	SNP	T	C	C	rs6603855	by1000genomes	2012-1351:2012-338-T	g.chr1:16460541T>C	uc001aya.1	-							NM_004431	NP_004422
NOTCH2	4853	broad.mit.edu	37	1	120490857	120490857	+	Intron	SNP	C	G	G			2012-1351:2012-338-T	g.chr1:120490857C>G	uc001eik.2	-						NOTCH2_uc001eil.2_Intron	NM_024408	NP_077719
PDE4DIP	9659	broad.mit.edu	37	1	144917479	144917479	+	Intron	SNP	G	C	C			2012-1351:2012-338-T	g.chr1:144917479G>C	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_Intron|PDE4DIP_uc001emd.1_Intron|PDE4DIP_uc001emb.1_Intron|PDE4DIP_uc001eme.1_Intron|PDE4DIP_uc001emf.1_Intron	NM_014644	NP_055459
PDE4DIP	9659	broad.mit.edu	37	1	144917552	144917552	+	Missense_Mutation	SNP	G	C	C			2012-1351:2012-338-T	g.chr1:144917552G>C	uc001elw.3	-	12	1843	c.1552C>G	c.(1552-1554)CAT>GAT	p.H518D	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.H584D|PDE4DIP_uc001emc.1_Missense_Mutation_p.H518D|PDE4DIP_uc001emd.1_Missense_Mutation_p.H518D|PDE4DIP_uc001emb.1_Missense_Mutation_p.H681D|PDE4DIP_uc001eme.1_Missense_Mutation_p.H47D|PDE4DIP_uc001emf.1_Missense_Mutation_p.H305D	NM_014644	NP_055459
IRF6	3664	broad.mit.edu	37	1	209968918	209968918	+	Intron	SNP	G	A	A	rs17015224	by1000genomes	2012-1351:2012-338-T	g.chr1:209968918G>A	uc001hhq.1	-						IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Intron	NM_006147	NP_006138
USH2A	7399	broad.mit.edu	37	1	215849044	215849044	+	Intron	SNP	C	G	G	rs4443864	by1000genomes	2012-1351:2012-338-T	g.chr1:215849044C>G	uc001hku.1	-							NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216143948	216143948	+	Intron	SNP	T	C	C	rs6689120	by1000genomes	2012-1351:2012-338-T	g.chr1:216143948T>C	uc001hku.1	-							NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216370108	216370108	+	Intron	SNP	C	T	T	rs447102	by1000genomes	2012-1351:2012-338-T	g.chr1:216370108C>T	uc001hku.1	-						USH2A_uc001hkv.2_Intron	NM_206933	NP_996816
ZMYND11	10771	broad.mit.edu	37	10	194267	194267	+	Intron	SNP	C	T	T			2012-1351:2012-338-T	g.chr10:194267C>T	uc010pzt.1	+						ZMYND11_uc001ifk.2_Intron|ZMYND11_uc010pzu.1_Intron|ZMYND11_uc010pzv.1_Intron|ZMYND11_uc010pzw.1_Intron|ZMYND11_uc001ifm.2_Intron	NM_006624	NP_006615
FGFR2	2263	broad.mit.edu	37	10	123239112	123239112	+	3'UTR	SNP	G	A	A	rs1047057	by1000genomes	2012-1351:2012-338-T	g.chr10:123239112G>A	uc010qtk.1	-	19					FGFR2_uc010qtg.1_3'UTR|FGFR2_uc010qth.1_3'UTR|FGFR2_uc010qti.1_Silent_p.L703L|FGFR2_uc010qtj.1_3'UTR|FGFR2_uc010qtl.1_3'UTR|FGFR2_uc010qtm.1_3'UTR|FGFR2_uc001lfg.3_3'UTR	NM_000141	NP_000132
FGFR2	2263	broad.mit.edu	37	10	123243197	123243197	+	Intron	SNP	G	A	A	rs2278202	by1000genomes	2012-1351:2012-338-T	g.chr10:123243197G>A	uc010qtk.1	-						FGFR2_uc010qtg.1_Intron|FGFR2_uc010qth.1_Intron|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Intron|FGFR2_uc010qtl.1_Intron|FGFR2_uc010qtm.1_Intron|FGFR2_uc001lfl.3_Intron|FGFR2_uc001lfm.2_Intron|FGFR2_uc001lfg.3_Intron|FGFR2_uc001lfk.1_Intron	NM_000141	NP_000132
DOCK1	1793	broad.mit.edu	37	10	129226688	129226688	+	Intron	SNP	T	C	C			2012-1351:2012-338-T	g.chr10:129226688T>C	uc001ljt.2	+						DOCK1_uc010qun.1_Intron|DOCK1_uc009yaq.2_Intron	NM_001380	NP_001371
BRSK2	9024	broad.mit.edu	37	11	1416189	1416189	+	Intron	SNP	C	T	T			2012-1351:2012-338-T	g.chr11:1416189C>T	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
MTA2	9219	broad.mit.edu	37	11	62362293	62362293	+	Intron	SNP	A	G	G	rs11231154	by1000genomes	2012-1351:2012-338-T	g.chr11:62362293A>G	uc001ntq.1	-						MTA2_uc010rlx.1_Intron	NM_004739	NP_004730
MTA2	9219	broad.mit.edu	37	11	62369436	62369436	+	5'Flank	SNP	C	G	G	rs12049914	by1000genomes	2012-1351:2012-338-T	g.chr11:62369436C>G	uc001ntq.1	-						MTA2_uc010rlx.1_5'Flank	NM_004739	NP_004730
MRE11A	4361	broad.mit.edu	37	11	94179125	94179125	+	Intron	SNP	T	C	C	rs1014666	by1000genomes	2012-1351:2012-338-T	g.chr11:94179125T>C	uc001peu.2	-						MRE11A_uc001pev.2_Intron|MRE11A_uc009ywj.2_Intron	NM_005591	NP_005582
MRE11A	4361	broad.mit.edu	37	11	94197260	94197260	+	Intron	SNP	A	G	G	rs641936	by1000genomes	2012-1351:2012-338-T	g.chr11:94197260A>G	uc001peu.2	-						MRE11A_uc001pev.2_Intron|MRE11A_uc009ywj.2_Intron	NM_005591	NP_005582
MRE11A	4361	broad.mit.edu	37	11	94212154	94212154	+	Intron	SNP	A	G	G	rs680695	by1000genomes	2012-1351:2012-338-T	g.chr11:94212154A>G	uc001peu.2	-						MRE11A_uc001pev.2_Intron|MRE11A_uc009ywj.2_Intron	NM_005591	NP_005582
MRE11A	4361	broad.mit.edu	37	11	94225807	94225807	+	Intron	SNP	C	T	T	rs496797	by1000genomes	2012-1351:2012-338-T	g.chr11:94225807C>T	uc001peu.2	-						MRE11A_uc001pev.2_Intron|MRE11A_uc009ywj.2_Splice_Site_p.G10_splice|ANKRD49_uc001pew.2_5'Flank|ANKRD49_uc001pex.2_5'Flank	NM_005591	NP_005582
MRE11A	4361	broad.mit.edu	37	11	94225920	94225920	+	Intron	SNP	C	T	T	rs497763	by1000genomes	2012-1351:2012-338-T	g.chr11:94225920C>T	uc001peu.2	-						MRE11A_uc001pev.2_Intron|MRE11A_uc009ywj.2_5'UTR|ANKRD49_uc001pew.2_5'Flank|ANKRD49_uc001pex.2_5'Flank	NM_005591	NP_005582
MRE11A	4361	broad.mit.edu	37	11	94227125	94227125	+	5'Flank	SNP	C	A	A	rs11020802	by1000genomes	2012-1351:2012-338-T	g.chr11:94227125C>A	uc001peu.2	-						MRE11A_uc001pev.2_5'Flank|MRE11A_uc009ywj.2_5'Flank|ANKRD49_uc001pew.2_5'Flank|ANKRD49_uc001pex.2_5'Flank	NM_005591	NP_005582
PIK3C2G	5288	broad.mit.edu	37	12	18414567	18414567	+	Intron	SNP	G	C	C	rs73060413	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr12:18414567G>C	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron	NM_004570	NP_004561
PIK3C2G	5288	broad.mit.edu	37	12	18446678	18446678	+	Intron	SNP	T	C	C	rs7132223	by1000genomes	2012-1351:2012-338-T	g.chr12:18446678T>C	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron|PIK3C2G_uc010sib.1_Intron|PIK3C2G_uc010sic.1_Intron	NM_004570	NP_004561
PIK3C2G	5288	broad.mit.edu	37	12	18656174	18656174	+	Intron	SNP	G	C	C	rs11044141	by1000genomes	2012-1351:2012-338-T	g.chr12:18656174G>C	uc001rdt.2	+						PIK3C2G_uc010sia.1_Intron|PIK3C2G_uc010sib.1_Intron|PIK3C2G_uc010sic.1_Intron	NM_004570	NP_004561
ASCL4	121549	broad.mit.edu	37	12	108168706	108168706	+	5'UTR	SNP	G	A	A	rs61938581	by1000genomes	2012-1351:2012-338-T	g.chr12:108168706G>A	uc001tmr.2	+	1						NM_203436	NP_982260
RB1	5925	broad.mit.edu	37	13	48916895	48916895	+	Intron	SNP	C	T	T	rs520342	by1000genomes	2012-1351:2012-338-T	g.chr13:48916895C>T	uc001vcb.2	+						RB1_uc010acs.1_Intron	NM_000321	NP_000312
MYH7	4625	broad.mit.edu	37	14	23897793	23897793	+	Missense_Mutation	SNP	C	G	G			2012-1351:2012-338-T	g.chr14:23897793C>G	uc001wjx.2	-	15	1600	c.1494G>C	c.(1492-1494)CAG>CAC	p.Q498H		NM_000257	NP_000248
FANCM	57697	broad.mit.edu	37	14	45609669	45609669	+	Intron	SNP	A	G	G	rs8017844	by1000genomes	2012-1351:2012-338-T	g.chr14:45609669A>G	uc001wwd.3	+						FANCM_uc001wwc.2_Intron|FANCM_uc010anf.2_Intron	NM_020937	NP_065988
FANCM	57697	broad.mit.edu	37	14	45633418	45633418	+	Intron	SNP	C	G	G	rs10129236	by1000genomes	2012-1351:2012-338-T	g.chr14:45633418C>G	uc001wwd.3	+						FANCM_uc001wwc.2_Intron|FANCM_uc010anf.2_Intron|FANCM_uc001wwe.3_Intron	NM_020937	NP_065988
FANCM	57697	broad.mit.edu	37	14	45650158	45650158	+	Intron	SNP	A	G	G	rs17115866	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr14:45650158A>G	uc001wwd.3	+						FANCM_uc010anf.2_Intron|FANCM_uc001wwe.3_Intron|FANCM_uc010ang.2_Intron	NM_020937	NP_065988
FANCM	57697	broad.mit.edu	37	14	45650813	45650813	+	Intron	SNP	G	A	A	rs8020533	by1000genomes	2012-1351:2012-338-T	g.chr14:45650813G>A	uc001wwd.3	+						FANCM_uc010anf.2_Intron|FANCM_uc001wwe.3_Intron|FANCM_uc010ang.2_Intron	NM_020937	NP_065988
FANCM	57697	broad.mit.edu	37	14	45664721	45664721	+	Intron	SNP	C	G	G	rs58790242	by1000genomes	2012-1351:2012-338-T	g.chr14:45664721C>G	uc001wwd.3	+						FANCM_uc010anf.2_Intron|FANCM_uc001wwe.3_Intron|FANCM_uc010ang.2_Missense_Mutation_p.S1007C	NM_020937	NP_065988
SYNE2	23224	broad.mit.edu	37	14	64331334	64331334	+	Intron	SNP	A	T	T	rs998242	by1000genomes	2012-1351:2012-338-T	g.chr14:64331334A>T	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64331366	64331366	+	Intron	SNP	C	A	A	rs998241	by1000genomes	2012-1351:2012-338-T	g.chr14:64331366C>A	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64340877	64340877	+	Intron	SNP	A	G	G	rs8016321	by1000genomes	2012-1351:2012-338-T	g.chr14:64340877A>G	uc001xgm.2	+						SYNE2_uc001xgk.2_Intron|SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64450479	64450479	+	Missense_Mutation	SNP	A	G	G	rs78191145	by1000genomes	2012-1351:2012-338-T	g.chr14:64450479A>G	uc001xgm.2	+	18	2256	c.2026A>G	c.(2026-2028)AAA>GAA	p.K676E	SYNE2_uc001xgl.2_Missense_Mutation_p.K676E	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64556271	64556271	+	Intron	SNP	T	C	C	rs72720312	by1000genomes	2012-1351:2012-338-T	g.chr14:64556271T>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apx.1_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64565582	64565582	+	Intron	SNP	T	C	C	rs9323444	by1000genomes	2012-1351:2012-338-T	g.chr14:64565582T>C	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apx.1_Missense_Mutation_p.S534P|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64629042	64629042	+	Intron	SNP	G	T	T			2012-1351:2012-338-T	g.chr14:64629042G>T	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc001xgp.2_Missense_Mutation_p.Q178H|SYNE2_uc010aqa.2_Intron	NM_015180	NP_055995
TRIP11	9321	broad.mit.edu	37	14	92454604	92454604	+	Intron	SNP	A	G	G	rs2273182	by1000genomes	2012-1351:2012-338-T	g.chr14:92454604A>G	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
TRIP11	9321	broad.mit.edu	37	14	92460098	92460098	+	Intron	SNP	C	A	A	rs2273185	by1000genomes	2012-1351:2012-338-T	g.chr14:92460098C>A	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
TRIP11	9321	broad.mit.edu	37	14	92473943	92473943	+	Intron	SNP	T	C	C	rs3818095	by1000genomes	2012-1351:2012-338-T	g.chr14:92473943T>C	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
TRIP11	9321	broad.mit.edu	37	14	92477168	92477168	+	Intron	SNP	A	G	G	rs2277526	by1000genomes	2012-1351:2012-338-T	g.chr14:92477168A>G	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
TRIP11	9321	broad.mit.edu	37	14	92478198	92478198	+	Intron	SNP	A	G	G	rs7151632	by1000genomes	2012-1351:2012-338-T	g.chr14:92478198A>G	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
PPP4R4	57718	broad.mit.edu	37	14	94708675	94708675	+	Missense_Mutation	SNP	C	T	T			2012-1351:2012-338-T	g.chr14:94708675C>T	uc001ycs.1	+	11	1350	c.1196C>T	c.(1195-1197)TCT>TTT	p.S399F		NM_058237	NP_478144
DICER1	23405	broad.mit.edu	37	14	95581899	95581899	+	Intron	SNP	G	A	A	rs2275182	by1000genomes	2012-1351:2012-338-T	g.chr14:95581899G>A	uc001ydw.2	-						DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron	NM_030621	NP_085124
TRAF3	7187	broad.mit.edu	37	14	103338324	103338324	+	Intron	SNP	T	A	A	rs2295402	by1000genomes	2012-1351:2012-338-T	g.chr14:103338324T>A	uc001ymc.1	+						TRAF3_uc001yme.1_Intron|TRAF3_uc001ymd.1_Intron|TRAF3_uc010txy.1_Intron	NM_145725	NP_663777
TRAF3	7187	broad.mit.edu	37	14	103357603	103357603	+	Intron	SNP	G	T	T	rs2273393	by1000genomes	2012-1351:2012-338-T	g.chr14:103357603G>T	uc001ymc.1	+						TRAF3_uc001yme.1_Intron|TRAF3_uc001ymd.1_Intron|TRAF3_uc010txy.1_Intron	NM_145725	NP_663777
TLN2	83660	broad.mit.edu	37	15	63030295	63030295	+	Intron	SNP	T	G	G			2012-1351:2012-338-T	g.chr15:63030295T>G	uc002alb.3	+						TLN2_uc002alc.3_5'Flank	NM_015059	NP_055874
CYLD	1540	broad.mit.edu	37	16	50811964	50811964	+	Intron	SNP	G	A	A	rs16948813	by1000genomes	2012-1351:2012-338-T	g.chr16:50811964G>A	uc002egp.1	+						CYLD_uc002ego.2_Intron|CYLD_uc010cbs.1_Intron|CYLD_uc002egq.1_Intron|CYLD_uc002egr.1_Intron|CYLD_uc002egs.1_Intron	NM_015247	NP_056062
CDH1	999	broad.mit.edu	37	16	68867192	68867192	+	Splice_Site	SNP	G	C	C			2012-1351:2012-338-T	g.chr16:68867192G>C	uc002ewg.1	+	16	2564	c.2440_splice	c.e16-1	p.N814_splice	CDH1_uc010vlj.1_Splice_Site|CDH1_uc010cfg.1_Splice_Site_p.N753_splice	NM_004360	NP_004351
ZFPM1	161882	broad.mit.edu	37	16	88588188	88588188	+	Intron	SNP	A	C	C	rs67501042		2012-1351:2012-338-T	g.chr16:88588188A>C	uc002fkv.2	+							NM_153813	NP_722520
FANCA	2175	broad.mit.edu	37	16	89845287	89845287	+	Intron	SNP	A	G	G	rs2302162	byFrequency	2012-1351:2012-338-T	g.chr16:89845287A>G	uc002fou.1	-						FANCA_uc010vpn.1_Intron	NM_000135	NP_000126
ABR	29	broad.mit.edu	37	17	1022595	1022595	+	Intron	SNP	C	G	G			2012-1351:2012-338-T	g.chr17:1022595C>G	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1046418	1046418	+	Intron	SNP	G	A	A			2012-1351:2012-338-T	g.chr17:1046418G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
TBC1D3	729873	broad.mit.edu	37	17	36349315	36349315	+	Intron	SNP	C	T	T			2012-1351:2012-338-T	g.chr17:36349315C>T	uc002hpr.2	-						TBC1D3_uc010wdl.1_5'Flank|TBC1D3_uc002hox.2_5'Flank|TBC1D3_uc010wdm.1_5'Flank|TBC1D3_uc002hpq.2_5'Flank|TBC1D3_uc010cvj.1_5'Flank|TBC1D3_uc010cvk.2_Intron|TBC1D3_uc002hpp.2_5'Flank|TBC1D3_uc010wdn.1_Intron	NM_001123391	NP_001116863
STAT3	6774	broad.mit.edu	37	17	40474864	40474864	+	Intron	SNP	A	G	G	rs8064496	by1000genomes	2012-1351:2012-338-T	g.chr17:40474864A>G	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
STAT3	6774	broad.mit.edu	37	17	40489939	40489939	+	Intron	SNP	T	G	G	rs62075766	by1000genomes	2012-1351:2012-338-T	g.chr17:40489939T>G	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
STAT3	6774	broad.mit.edu	37	17	40500265	40500265	+	Intron	SNP	C	A	A	rs2306581	by1000genomes	2012-1351:2012-338-T	g.chr17:40500265C>A	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
BRCA1	672	broad.mit.edu	37	17	41215825	41215825	+	Intron	SNP	C	T	T	rs3092994	by1000genomes	2012-1351:2012-338-T	g.chr17:41215825C>T	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
BRCA1	672	broad.mit.edu	37	17	41219560	41219560	+	Intron	SNP	C	T	T	rs8176235	by1000genomes	2012-1351:2012-338-T	g.chr17:41219560C>T	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
BRCA1	672	broad.mit.edu	37	17	41226601	41226601	+	Intron	SNP	G	C	C	rs8176212	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr17:41226601G>C	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
BRCA1	672	broad.mit.edu	37	17	41226675	41226675	+	Intron	SNP	A	T	T	rs2236762	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr17:41226675A>T	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
BRCA1	672	broad.mit.edu	37	17	41257134	41257134	+	Intron	SNP	T	C	C	rs799912	by1000genomes	2012-1351:2012-338-T	g.chr17:41257134T>C	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_5'Flank|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Intron|BRCA1_uc002ide.1_5'Flank|BRCA1_uc010cyy.1_Intron|BRCA1_uc010whs.1_Intron|BRCA1_uc010cyz.2_Intron|BRCA1_uc010cza.2_Intron|BRCA1_uc010wht.1_Intron	NM_007294	NP_009225
BRCA1	672	broad.mit.edu	37	17	41277187	41277187	+	Intron	SNP	G	C	C	rs799905	by1000genomes	2012-1351:2012-338-T	g.chr17:41277187G>C	uc002icq.2	-						BRCA1_uc010whp.1_Intron|NBR2_uc002idf.2_5'Flank|NBR2_uc010czb.1_5'Flank|NBR2_uc002idg.2_5'Flank|NBR2_uc002idh.2_5'Flank|BRCA1_uc010whl.1_5'Flank|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_5'Flank|BRCA1_uc010cyy.1_Intron|BRCA1_uc010whs.1_Intron|BRCA1_uc010cyz.2_Intron|BRCA1_uc010cza.2_Intron|BRCA1_uc010wht.1_Intron	NM_007294	NP_009225
RAD51C	5889	broad.mit.edu	37	17	56771096	56771096	+	Intron	SNP	C	T	T	rs17222691	by1000genomes	2012-1351:2012-338-T	g.chr17:56771096C>T	uc002iwu.2	+						TEX14_uc002iwr.1_5'Flank|TEX14_uc002iws.1_5'Flank|TEX14_uc010dcz.1_5'Flank|TEX14_uc010dda.1_5'Flank|TEX14_uc010wnz.1_5'Flank|RAD51C_uc002iwt.1_Intron|RAD51C_uc010woa.1_Intron|RAD51C_uc010ddc.2_Intron|RAD51C_uc002iwv.2_Intron|RAD51C_uc002iww.2_Intron|RAD51C_uc010wob.1_Intron	NM_058216	NP_478123
BRIP1	83990	broad.mit.edu	37	17	59763114	59763114	+	Intron	SNP	A	T	T	rs4988357	by1000genomes	2012-1351:2012-338-T	g.chr17:59763114A>T	uc002izk.1	-						BRIP1_uc002izl.1_3'UTR	NM_032043	NP_114432
RPTOR	57521	broad.mit.edu	37	17	78814156	78814156	+	Intron	SNP	G	A	A	rs113199399		2012-1351:2012-338-T	g.chr17:78814156G>A	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
PHLPP1	23239	broad.mit.edu	37	18	60612536	60612536	+	Intron	SNP	T	G	G	rs525092	by1000genomes	2012-1351:2012-338-T	g.chr18:60612536T>G	uc002lis.2	+							NM_194449	NP_919431
PHLPP1	23239	broad.mit.edu	37	18	60630531	60630531	+	Intron	SNP	T	C	C	rs547690	by1000genomes	2012-1351:2012-338-T	g.chr18:60630531T>C	uc002lis.2	+							NM_194449	NP_919431
NOTCH3	4854	broad.mit.edu	37	19	15291699	15291699	+	Intron	SNP	T	C	C	rs57538005	by1000genomes	2012-1351:2012-338-T	g.chr19:15291699T>C	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
PIK3R2	5296	broad.mit.edu	37	19	18273784	18273784	+	Missense_Mutation	SNP	G	A	A			2012-1351:2012-338-T	g.chr19:18273784G>A	uc002nia.1	+	10	1629	c.1117G>A	c.(1117-1119)GGG>AGG	p.G373R	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018
ZNF544	27300	broad.mit.edu	37	19	58769866	58769866	+	Intron	SNP	T	A	A			2012-1351:2012-338-T	g.chr19:58769866T>A	uc010euo.2	+						ZNF544_uc010eun.1_Intron|ZNF544_uc010yhw.1_Intron|ZNF544_uc010yhx.1_Intron|ZNF544_uc010yhy.1_Intron|ZNF544_uc002qrt.3_Intron|ZNF544_uc002qru.3_Intron|uc002qrx.1_RNA	NM_014480	NP_055295
ZNF544	27300	broad.mit.edu	37	19	58769896	58769896	+	Intron	SNP	T	A	A			2012-1351:2012-338-T	g.chr19:58769896T>A	uc010euo.2	+						ZNF544_uc010eun.1_Intron|ZNF544_uc010yhw.1_Intron|ZNF544_uc010yhx.1_Intron|ZNF544_uc010yhy.1_Intron|ZNF544_uc002qrt.3_Intron|ZNF544_uc002qru.3_Intron|uc002qrx.1_RNA	NM_014480	NP_055295
RMND5A	64795	broad.mit.edu	37	2	87655342	87655342	+	Intron	SNP	A	G	G			2012-1351:2012-338-T	g.chr2:87655342A>G	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	140992337	140992337	+	Intron	SNP	C	A	A	rs13387241	by1000genomes	2012-1351:2012-338-T	g.chr2:140992337C>A	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141004513	141004513	+	Intron	SNP	C	T	T	rs11895946	by1000genomes	2012-1351:2012-338-T	g.chr2:141004513C>T	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141253408	141253408	+	Intron	SNP	T	C	C	rs11683334	by1000genomes	2012-1351:2012-338-T	g.chr2:141253408T>C	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141260507	141260507	+	Intron	SNP	T	C	C	rs4450541	by1000genomes	2012-1351:2012-338-T	g.chr2:141260507T>C	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141260754	141260754	+	Intron	SNP	G	A	A	rs76928339	by1000genomes	2012-1351:2012-338-T	g.chr2:141260754G>A	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141708021	141708021	+	Intron	SNP	T	A	A	rs6706503	by1000genomes	2012-1351:2012-338-T	g.chr2:141708021T>A	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141747249	141747249	+	Intron	SNP	A	T	T	rs1429365	by1000genomes	2012-1351:2012-338-T	g.chr2:141747249A>T	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141747293	141747293	+	Intron	SNP	T	C	C	rs1429366	by1000genomes	2012-1351:2012-338-T	g.chr2:141747293T>C	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141945852	141945852	+	Intron	SNP	C	T	T	rs1249433	by1000genomes	2012-1351:2012-338-T	g.chr2:141945852C>T	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	142888376	142888376	+	5'UTR	SNP	G	C	C	rs1375610	by1000genomes	2012-1351:2012-338-T	g.chr2:142888376G>C	uc002tvj.1	-	1					LRP1B_uc010fnl.1_Missense_Mutation_p.P12A	NM_018557	NP_061027
TTN	7273	broad.mit.edu	37	2	179567460	179567460	+	Intron	SNP	C	T	T			2012-1351:2012-338-T	g.chr2:179567460C>T	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_5'Flank	NM_133378	NP_596869
STAT1	6772	broad.mit.edu	37	2	191839976	191839976	+	Intron	SNP	C	T	T	rs1914408	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr2:191839976C>T	uc002usj.2	-						STAT1_uc010fse.1_Intron	NM_007315	NP_009330
STAT1	6772	broad.mit.edu	37	2	191843830	191843830	+	Intron	SNP	A	G	G	rs2280235	by1000genomes	2012-1351:2012-338-T	g.chr2:191843830A>G	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron	NM_007315	NP_009330
STAT1	6772	broad.mit.edu	37	2	191845378	191845378	+	Missense_Mutation	SNP	C	A	A			2012-1351:2012-338-T	g.chr2:191845378C>A	uc002usj.2	-	19	1988	c.1600G>T	c.(1600-1602)GAT>TAT	p.D534Y	STAT1_uc010fse.1_Missense_Mutation_p.D534Y|STAT1_uc002usk.2_Missense_Mutation_p.D534Y|STAT1_uc002usl.2_Missense_Mutation_p.D536Y|STAT1_uc010fsf.1_Missense_Mutation_p.D346Y	NM_007315	NP_009330
STAT1	6772	broad.mit.edu	37	2	191878487	191878487	+	Intron	SNP	T	C	C	rs41430444	by1000genomes	2012-1351:2012-338-T	g.chr2:191878487T>C	uc002usj.2	-						STAT1_uc010fse.1_5'UTR|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron|STAT1_uc010fsf.1_Intron	NM_007315	NP_009330
CASP8	841	broad.mit.edu	37	2	202126863	202126863	+	Intron	SNP	T	C	C	rs4381764	by1000genomes	2012-1351:2012-338-T	g.chr2:202126863T>C	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxs.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc010ftd.1_Intron|CASP8_uc002uxv.1_Intron|CASP8_uc002uxw.1_Intron	NM_033355	NP_203519
MAP2	4133	broad.mit.edu	37	2	210526247	210526247	+	Intron	SNP	T	C	C	rs3768833	by1000genomes	2012-1351:2012-338-T	g.chr2:210526247T>C	uc002vde.1	+						MAP2_uc002vdc.1_Intron|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Intron	NM_002374	NP_002365
MAP2	4133	broad.mit.edu	37	2	210596825	210596825	+	3'UTR	SNP	T	C	C	rs76792277	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr2:210596825T>C	uc002vde.1	+	15					MAP2_uc002vdd.1_3'UTR|MAP2_uc002vdf.1_3'UTR|MAP2_uc002vdg.1_3'UTR|MAP2_uc002vdh.1_3'UTR|MAP2_uc002vdi.1_3'UTR	NM_002374	NP_002365
HDAC4	9759	broad.mit.edu	37	2	240154290	240154290	+	Intron	SNP	T	G	G			2012-1351:2012-338-T	g.chr2:240154290T>G	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
PRR21	643905	broad.mit.edu	37	2	240982111	240982111	+	Missense_Mutation	SNP	A	C	C			2012-1351:2012-338-T	g.chr2:240982111A>C	uc010zod.1	-	1	289	c.289T>G	c.(289-291)TTC>GTC	p.F97V		NM_001080835	NP_001074304
PAK7	57144	broad.mit.edu	37	20	9692033	9692033	+	5'UTR	SNP	C	T	T	rs2423432	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr20:9692033C>T	uc002wnl.2	-	3					PAK7_uc002wnk.2_5'UTR|PAK7_uc002wnj.2_5'UTR|PAK7_uc010gby.1_5'UTR	NM_020341	NP_065074
PAK7	57144	broad.mit.edu	37	20	9799510	9799510	+	Intron	SNP	G	C	C	rs3761162	by1000genomes	2012-1351:2012-338-T	g.chr20:9799510G>C	uc002wnl.2	-						PAK7_uc002wnk.2_Intron|PAK7_uc002wnj.2_Intron|PAK7_uc010gby.1_Intron	NM_020341	NP_065074
ADAMTS5	11096	broad.mit.edu	37	21	28338964	28338964	+	5'UTR	SNP	G	A	A	rs11427798		2012-1351:2012-338-T	g.chr21:28338964G>A	uc002ymg.2	-	1						NM_007038	NP_008969
RIPK4	54101	broad.mit.edu	37	21	43185980	43185980	+	Intron	SNP	C	T	T	rs3787962	by1000genomes	2012-1351:2012-338-T	g.chr21:43185980C>T	uc002yzn.1	-							NM_020639	NP_065690
CECR5	27440	broad.mit.edu	37	22	17628032	17628032	+	Intron	SNP	C	T	T	rs1316053		2012-1351:2012-338-T	g.chr22:17628032C>T	uc002zmf.2	-						CECR5_uc002zme.2_Intron|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Intron	NM_033070	NP_149061
EP300	2033	broad.mit.edu	37	22	41566595	41566595	+	Intron	SNP	C	T	T	rs6002271	by1000genomes	2012-1351:2012-338-T	g.chr22:41566595C>T	uc003azl.3	+							NM_001429	NP_001420
CIDEC	63924	broad.mit.edu	37	3	10028988	10028988	+	Intron	SNP	C	A	A	rs28366039	by1000genomes	2012-1351:2012-338-T	g.chr3:10028988C>A	uc003bto.2	-						TMEM111_uc003bun.2_5'Flank|TMEM111_uc003buo.2_5'Flank|uc003bup.1_Intron|uc003buq.1_Intron		
CIDEC	63924	broad.mit.edu	37	3	10029763	10029763	+	Intron	SNP	C	T	T			2012-1351:2012-338-T	g.chr3:10029763C>T	uc003bto.2	-						TMEM111_uc003bun.2_5'Flank|TMEM111_uc003buo.2_5'Flank|uc003bup.1_Intron|uc003buq.1_Intron		
FANCD2	2177	broad.mit.edu	37	3	10067972	10067972	+	5'Flank	SNP	C	T	T	rs17032268	by1000genomes	2012-1351:2012-338-T	g.chr3:10067972C>T	uc003buw.2	+						CIDEC_uc003bto.2_5'Flank|FANCD2_uc003bux.1_5'Flank|FANCD2_uc003buy.1_5'Flank|CIDECP_uc003bus.2_5'Flank|CIDECP_uc003but.2_5'Flank|CIDECP_uc003buu.1_5'Flank|FANCD2_uc003buv.2_5'Flank	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10073824	10073824	+	Intron	SNP	G	C	C	rs6414438	by1000genomes	2012-1351:2012-338-T	g.chr3:10073824G>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc003buv.2_Intron	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10081545	10081545	+	Intron	SNP	G	C	C	rs17032283	by1000genomes	2012-1351:2012-338-T	g.chr3:10081545G>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc003buv.2_Silent_p.L237L	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10084224	10084224	+	Intron	SNP	C	T	T	rs9879080	by1000genomes	2012-1351:2012-338-T	g.chr3:10084224C>T	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10088016	10088016	+	Intron	SNP	T	C	C	rs35208474	by1000genomes	2012-1351:2012-338-T	g.chr3:10088016T>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10114802	10114802	+	Intron	SNP	T	C	C	rs9824585	by1000genomes	2012-1351:2012-338-T	g.chr3:10114802T>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10133949	10133949	+	Intron	SNP	A	G	G	rs9811771	by1000genomes	2012-1351:2012-338-T	g.chr3:10133949A>G	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron|C3orf24_uc003buz.2_Intron	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10138189	10138189	+	Intron	SNP	T	C	C	rs2272124	by1000genomes	2012-1351:2012-338-T	g.chr3:10138189T>C	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron|C3orf24_uc003buz.2_Intron	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10140671	10140671	+	3'UTR	SNP	G	A	A	rs7626117	by1000genomes	2012-1351:2012-338-T	g.chr3:10140671G>A	uc003buw.2	+	43					FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron|C3orf24_uc003buz.2_Intron	NM_033084	NP_149075
FANCD2	2177	broad.mit.edu	37	3	10140696	10140696	+	3'UTR	SNP	A	G	G	rs7647987	by1000genomes	2012-1351:2012-338-T	g.chr3:10140696A>G	uc003buw.2	+	43					FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|FANCD2_uc010hcw.1_Intron|C3orf24_uc003buz.2_Intron	NM_033084	NP_149075
BBX	56987	broad.mit.edu	37	3	107245533	107245533	+	Intron	SNP	G	A	A	rs595176	by1000genomes	2012-1351:2012-338-T	g.chr3:107245533G>A	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron	NM_001142568	NP_001136040
BBX	56987	broad.mit.edu	37	3	107447857	107447857	+	Intron	SNP	T	A	A	rs3761963	by1000genomes	2012-1351:2012-338-T	g.chr3:107447857T>A	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Intron|BBX_uc003dwm.3_Intron	NM_001142568	NP_001136040
TP63	8626	broad.mit.edu	37	3	189456729	189456729	+	Intron	SNP	C	G	G	rs4686525	by1000genomes	2012-1351:2012-338-T	g.chr3:189456729C>G	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189582241	189582241	+	Intron	SNP	T	G	G	rs17514215	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr3:189582241T>G	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189582249	189582249	+	Intron	SNP	G	A	A	rs2276792	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr3:189582249G>A	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_Intron|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Intron	NM_003722	NP_003713
TP63	8626	broad.mit.edu	37	3	189590825	189590825	+	Intron	SNP	G	A	A	rs9840360	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr3:189590825G>A	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_3'UTR|TP63_uc003fsb.2_Intron|TP63_uc003fsc.2_Intron|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Intron	NM_003722	NP_003713
MUC4	4585	broad.mit.edu	37	3	195503639	195503639	+	Intron	SNP	T	A	A			2012-1351:2012-338-T	g.chr3:195503639T>A	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
FGFR3	2261	broad.mit.edu	37	4	1803307	1803307	+	Intron	SNP	T	C	C	rs2305183	by1000genomes	2012-1351:2012-338-T	g.chr4:1803307T>C	uc003gdr.3	+						FGFR3_uc003gdu.2_Intron|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Intron|FGFR3_uc010icb.1_Intron|FGFR3_uc003gdt.1_Intron	NM_000142	NP_000133
FGFR3	2261	broad.mit.edu	37	4	1803704	1803704	+	Silent	SNP	T	C	C	rs2234909	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr4:1803704T>C	uc003gdr.3	+	7	1138	c.882T>C	c.(880-882)AAT>AAC	p.N294N	FGFR3_uc003gdu.2_Silent_p.N294N|FGFR3_uc003gds.3_Silent_p.N294N|FGFR3_uc003gdq.3_Silent_p.N294N|FGFR3_uc010icb.1_Intron|FGFR3_uc003gdt.1_Silent_p.N136N	NM_000142	NP_000133
REST	5978	broad.mit.edu	37	4	57793751	57793751	+	Intron	SNP	G	A	A	rs1105434	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr4:57793751G>A	uc003hch.2	+						REST_uc003hci.2_Intron|REST_uc010ihf.2_Intron	NM_005612	NP_005603
TET2	54790	broad.mit.edu	37	4	106160133	106160133	+	Intron	SNP	G	A	A	rs56185013	by1000genomes	2012-1351:2012-338-T	g.chr4:106160133G>A	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron|TET2_uc010ilp.1_Intron|TET2_uc003hxi.1_3'UTR	NM_001127208	NP_001120680
TET2	54790	broad.mit.edu	37	4	106190862	106190862	+	Silent	SNP	T	C	C	rs3733609	by1000genomes	2012-1351:2012-338-T	g.chr4:106190862T>C	uc003hxk.2	+	9	4526	c.4140T>C	c.(4138-4140)CAT>CAC	p.H1380H	TET2_uc011cez.1_Silent_p.H1401H|TET2_uc003hxj.2_RNA	NM_001127208	NP_001120680
INPP4B	8821	broad.mit.edu	37	4	143003339	143003339	+	Splice_Site	SNP	C	G	G			2012-1351:2012-338-T	g.chr4:143003339C>G	uc003iix.3	-	26	3083	c.2488_splice	c.e26-1	p.I830_splice	INPP4B_uc003iiw.3_Splice_Site_p.I830_splice|INPP4B_uc011chm.1_Splice_Site|INPP4B_uc011chn.1_Intron|INPP4B_uc011cho.1_Intron	NM_003866	NP_003857
INPP4B	8821	broad.mit.edu	37	4	143095042	143095042	+	Intron	SNP	A	C	C	rs10013734	by1000genomes	2012-1351:2012-338-T	g.chr4:143095042A>C	uc003iix.3	-						INPP4B_uc003iiw.3_Intron|INPP4B_uc011chm.1_Intron|INPP4B_uc011chn.1_Intron|INPP4B_uc011cho.1_Intron|INPP4B_uc011chp.1_Intron	NM_003866	NP_003857
INPP4B	8821	broad.mit.edu	37	4	143305189	143305189	+	Intron	SNP	A	T	T	rs11944462	by1000genomes	2012-1351:2012-338-T	g.chr4:143305189A>T	uc003iix.3	-						INPP4B_uc003iiw.3_Intron|INPP4B_uc011chm.1_Intron|INPP4B_uc011cho.1_Intron	NM_003866	NP_003857
FBXW7	55294	broad.mit.edu	37	4	153252061	153252061	+	Intron	SNP	A	G	G	rs10033601	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr4:153252061A>G	uc003ims.2	-						FBXW7_uc011cii.1_Intron|FBXW7_uc003imt.2_Intron|FBXW7_uc011cih.1_Intron|FBXW7_uc003imq.2_Intron|FBXW7_uc003imr.2_Intron	NM_033632	NP_361014
FBXW7	55294	broad.mit.edu	37	4	153333100	153333100	+	Intron	SNP	T	A	A	rs2292743	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr4:153333100T>A	uc003ims.2	-						FBXW7_uc011cii.1_Intron|FBXW7_uc003imt.2_Intron|FBXW7_uc003imu.2_Intron	NM_033632	NP_361014
FBXW7	55294	broad.mit.edu	37	4	153456102	153456102	+	5'UTR	SNP	A	G	G	rs1351903	by1000genomes	2012-1351:2012-338-T	g.chr4:153456102A>G	uc003ims.2	-	1					FBXW7_uc011cii.1_5'UTR|FBXW7_uc003imt.2_5'UTR|FBXW7_uc003imu.2_5'UTR|uc003imv.2_5'Flank	NM_033632	NP_361014
FAT1	2195	broad.mit.edu	37	4	187561080	187561080	+	Intron	SNP	A	G	G	rs10001377	by1000genomes	2012-1351:2012-338-T	g.chr4:187561080A>G	uc003izf.2	-							NM_005245	NP_005236
TERT	7015	broad.mit.edu	37	5	1273731	1273731	+	Intron	SNP	C	T	T			2012-1351:2012-338-T	g.chr5:1273731C>T	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
DNAH5	1767	broad.mit.edu	37	5	13753503	13753503	+	Missense_Mutation	SNP	G	A	A			2012-1351:2012-338-T	g.chr5:13753503G>A	uc003jfd.2	-	63	10753	c.10711C>T	c.(10711-10713)CCT>TCT	p.P3571S	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360
IL6ST	3572	broad.mit.edu	37	5	55243233	55243233	+	Intron	SNP	T	C	C	rs73756160	by1000genomes	2012-1351:2012-338-T	g.chr5:55243233T>C	uc003jqq.2	-						IL6ST_uc010iwb.2_Intron|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Intron|IL6ST_uc003jqr.2_Intron	NM_002184	NP_002175
PIK3R1	5295	broad.mit.edu	37	5	67587994	67587994	+	Intron	SNP	C	T	T	rs113538143		2012-1351:2012-338-T	g.chr5:67587994C>T	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron|PIK3R1_uc003jvc.2_Intron|PIK3R1_uc003jvd.2_Intron|PIK3R1_uc003jve.2_5'UTR|PIK3R1_uc011crb.1_5'Flank	NM_181523	NP_852664
RASA1	5921	broad.mit.edu	37	5	86564995	86564995	+	Intron	SNP	T	A	A	rs3734000	by1000genomes	2012-1351:2012-338-T	g.chr5:86564995T>A	uc003kiw.2	+						RASA1_uc010jav.2_Intron|RASA1_uc003kix.2_Intron|RASA1_uc011ctv.1_5'UTR|RASA1_uc011ctw.1_Intron|RASA1_uc010jaw.2_Intron|RASA1_uc011ctu.1_Intron	NM_002890	NP_002881
PCDHA13	56136	broad.mit.edu	37	5	140261977	140261977	+	Missense_Mutation	SNP	G	A	A			2012-1351:2012-338-T	g.chr5:140261977G>A	uc003lif.2	+	1	124	c.124G>A	c.(124-126)GGC>AGC	p.G42S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.G42S|PCDHA13_uc003lid.2_Missense_Mutation_p.G42S	NM_018904	NP_061727
FAT2	2196	broad.mit.edu	37	5	150917545	150917545	+	Intron	SNP	G	A	A	rs3816007	by1000genomes	2012-1351:2012-338-T	g.chr5:150917545G>A	uc003lue.3	-						GM2A_uc011dcs.1_Intron	NM_001447	NP_001438
UNC5A	90249	broad.mit.edu	37	5	176300129	176300129	+	Intron	SNP	A	C	C	rs34082098		2012-1351:2012-338-T	g.chr5:176300129A>C	uc003mey.2	+						UNC5A_uc010jkg.1_Intron	NM_133369	NP_588610
FGFR4	2264	broad.mit.edu	37	5	176523354	176523354	+	Missense_Mutation	SNP	G	A	A			2012-1351:2012-338-T	g.chr5:176523354G>A	uc003mfl.2	+	15	2178	c.2011G>A	c.(2011-2013)GAC>AAC	p.D671N	FGFR4_uc003mfm.2_Missense_Mutation_p.D671N|FGFR4_uc011dfu.1_Missense_Mutation_p.D603N|FGFR4_uc003mfo.2_Missense_Mutation_p.D631N	NM_002011	NP_002002
HLA-F	3134	broad.mit.edu	37	6	29692729	29692729	+	Intron	SNP	T	G	G	rs2072898	by1000genomes	2012-1351:2012-338-T	g.chr6:29692729T>G	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-F	3134	broad.mit.edu	37	6	29693113	29693113	+	Intron	SNP	C	T	T	rs2076177	by1000genomes	2012-1351:2012-338-T	g.chr6:29693113C>T	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-F	3134	broad.mit.edu	37	6	29693499	29693499	+	Intron	SNP	A	G	G	rs76517666		2012-1351:2012-338-T	g.chr6:29693499A>G	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-G	3135	broad.mit.edu	37	6	29794317	29794317	+	5'Flank	SNP	G	A	A	rs1736936		2012-1351:2012-338-T	g.chr6:29794317G>A	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_5'Flank|HLA-G_uc003nnz.3_5'Flank|HLA-G_uc010jrn.2_5'Flank|HLA-G_uc003nny.3_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29794989	29794989	+	Intron	SNP	G	A	A	rs112387540		2012-1351:2012-338-T	g.chr6:29794989G>A	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_5'Flank|HLA-G_uc010jrn.2_5'Flank|HLA-G_uc003nny.3_5'Flank|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29795136	29795136	+	Intron	SNP	A	C	C	rs114626623	by1000genomes	2012-1351:2012-338-T	g.chr6:29795136A>C	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_5'Flank|HLA-G_uc010jrn.2_5'Flank|HLA-G_uc003nny.3_5'Flank|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29795145	29795145	+	Intron	SNP	C	G	G	rs115740090	by1000genomes	2012-1351:2012-338-T	g.chr6:29795145C>G	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_5'Flank|HLA-G_uc010jrn.2_5'Flank|HLA-G_uc003nny.3_5'Flank|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29795253	29795253	+	Intron	SNP	C	A	A	rs1632943		2012-1351:2012-338-T	g.chr6:29795253C>A	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_5'Flank|HLA-G_uc010jrn.2_5'Flank|HLA-G_uc003nny.3_5'Flank|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29797782	29797782	+	Intron	SNP	T	C	C	rs1611627		2012-1351:2012-338-T	g.chr6:29797782T>C	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29797899	29797899	+	Intron	SNP	T	C	C	rs1632934		2012-1351:2012-338-T	g.chr6:29797899T>C	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29797933	29797933	+	Intron	SNP	C	T	T	rs116816012	by1000genomes	2012-1351:2012-338-T	g.chr6:29797933C>T	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29797951	29797951	+	Intron	SNP	A	G	G	rs114491387	by1000genomes	2012-1351:2012-338-T	g.chr6:29797951A>G	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29798140	29798140	+	Intron	SNP	A	G	G	rs915667		2012-1351:2012-338-T	g.chr6:29798140A>G	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29798419	29798419	+	Intron	SNP	G	A	A	rs114465251	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr6:29798419G>A	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29798459	29798459	+	Intron	SNP	C	G	G	rs915668		2012-1351:2012-338-T	g.chr6:29798459C>G	uc003nnw.2	+						HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_Intron|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_Intron|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29798617	29798617	+	3'UTR	SNP	G	C	C	rs77969756		2012-1351:2012-338-T	g.chr6:29798617G>C	uc003nnw.2	+	8					HLA-G_uc011dmb.1_Intron|HLA-G_uc003raj.3_3'UTR|HLA-G_uc003nnz.3_3'UTR|HLA-G_uc010jrn.2_3'UTR|HLA-G_uc003nny.3_RNA|HLA-G_uc003ran.1_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29857424	29857424	+	Intron	SNP	G	A	A	rs1611624		2012-1351:2012-338-T	g.chr6:29857424G>A	uc011dmb.1	+						HLA-H_uc003nod.2_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29894211	29894211	+	Intron	SNP	C	T	T	rs115472837	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr6:29894211C>T	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_RNA	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29896925	29896925	+	Intron	SNP	C	G	G	rs113988085		2012-1351:2012-338-T	g.chr6:29896925C>G	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|uc003noi.2_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29897412	29897412	+	Intron	SNP	G	C	C	rs1632902		2012-1351:2012-338-T	g.chr6:29897412G>C	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|uc003noi.2_RNA	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29909071	29909071	+	Intron	SNP	G	A	A	rs112279698		2012-1351:2012-338-T	g.chr6:29909071G>A	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
HLA-A	3105	broad.mit.edu	37	6	29912510	29912510	+	Intron	SNP	T	G	G	rs1632885		2012-1351:2012-338-T	g.chr6:29912510T>G	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
HLA-A	3105	broad.mit.edu	37	6	29913344	29913344	+	3'UTR	SNP	G	A	A	rs112720956		2012-1351:2012-338-T	g.chr6:29913344G>A	uc003nol.2	+	8					HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003non.2_3'UTR|HLA-A_uc003noo.2_3'UTR|HLA-A_uc010jrr.2_3'UTR|HLA-A_uc003nom.2_3'UTR|HLA-A_uc011dmc.1_3'UTR|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
HLA-A	3105	broad.mit.edu	37	6	29913483	29913483	+	3'UTR	SNP	T	C	C	rs116198299	by1000genomes	2012-1351:2012-338-T	g.chr6:29913483T>C	uc003nol.2	+	8					HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc003non.2_3'UTR|HLA-A_uc003noo.2_3'UTR|HLA-A_uc010jrr.2_3'UTR|HLA-A_uc003nom.2_3'UTR|HLA-A_uc011dmc.1_3'UTR|HLA-A_uc011dmd.1_3'UTR	NM_002116	NP_002107
HLA-G	3135	broad.mit.edu	37	6	29975950	29975950	+	Intron	SNP	C	T	T	rs111332850		2012-1351:2012-338-T	g.chr6:29975950C>T	uc011dmb.1	+						NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_Intron|HLA-J_uc003rtl.3_Intron|HLA-J_uc003nov.3_Intron	NM_002127	NP_002118
HLA-C	3107	broad.mit.edu	37	6	31236854	31236854	+	3'UTR	SNP	T	C	C	rs112902401	by1000genomes	2012-1351:2012-338-T	g.chr6:31236854T>C	uc003nsy.2	-	8					HLA-C_uc011dnj.1_3'UTR|HLA-C_uc003nsx.2_3'UTR|HLA-C_uc003nsz.2_3'UTR|HLA-C_uc010jsl.2_Missense_Mutation_p.T397A|HLA-C_uc003nta.2_3'UTR|HLA-C_uc003ntb.2_RNA|HLA-C_uc003ntc.1_Intron	NM_002117	NP_002108
HLA-C	3107	broad.mit.edu	37	6	31237255	31237255	+	Intron	SNP	G	A	A	rs2523609		2012-1351:2012-338-T	g.chr6:31237255G>A	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron	NM_002117	NP_002108
HLA-B	3106	broad.mit.edu	37	6	31321915	31321916	+	3'UTR	DNP	AA	GG	GG	rs1055890;rs1055849	by1000genomes;by1000genomes	2012-1351:2012-338-T	g.chr6:31321915_31321916AA>GG	uc003nth.2	-	8					HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_3'UTR	NM_005514	NP_005505
HLA-B	3106	broad.mit.edu	37	6	31322459	31322459	+	Intron	SNP	T	C	C	rs2507992	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr6:31322459T>C	uc003nth.2	-						HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Intron|HLA-B_uc003nti.1_Intron	NM_005514	NP_005505
HLA-B	3106	broad.mit.edu	37	6	31324415	31324415	+	Intron	SNP	A	C	C	rs2507989	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr6:31324415A>C	uc003nth.2	-						HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_5'UTR|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_5'Flank|HLA-B_uc010jso.2_Intron	NM_005514	NP_005505
TAP2	6891	broad.mit.edu	37	6	32798350	32798350	+	Intron	SNP	A	C	C	rs9380327	by1000genomes	2012-1351:2012-338-T	g.chr6:32798350A>C	uc003occ.2	-						TAP2_uc011dqf.1_Intron|TAP2_uc003ocb.1_Intron|TAP2_uc003ocd.2_Intron	NM_018833	NP_061313
TAP1	6890	broad.mit.edu	37	6	32818678	32818678	+	Intron	SNP	G	A	A	rs2071538	by1000genomes	2012-1351:2012-338-T	g.chr6:32818678G>A	uc003ocg.2	-						TAP1_uc011dqi.1_Intron	NM_000593	NP_000584
FANCE	2178	broad.mit.edu	37	6	35425263	35425263	+	Intron	SNP	G	A	A	rs9470033	by1000genomes	2012-1351:2012-338-T	g.chr6:35425263G>A	uc003oko.1	+						FANCE_uc010jvw.1_Intron	NM_021922	NP_068741
DST	667	broad.mit.edu	37	6	56484817	56484817	+	Intron	SNP	G	A	A			2012-1351:2012-338-T	g.chr6:56484817G>A	uc003pdf.2	-						DST_uc003pcz.3_Intron|DST_uc011dxj.1_Intron|DST_uc011dxk.1_Intron|DST_uc003pcy.3_Intron|DST_uc003pdb.2_Intron|DST_uc003pdc.3_Missense_Mutation_p.P1339S	NM_001144769	NP_001138241
ME1	4199	broad.mit.edu	37	6	84055876	84055876	+	Intron	SNP	G	A	A			2012-1351:2012-338-T	g.chr6:84055876G>A	uc003pjy.2	-						ME1_uc011dzb.1_Intron|ME1_uc011dzc.1_Intron	NM_002395	NP_002386
ROS1	6098	broad.mit.edu	37	6	117622028	117622028	+	Intron	SNP	A	G	G	rs62430805	by1000genomes	2012-1351:2012-338-T	g.chr6:117622028A>G	uc003pxp.1	-						ROS1_uc011ebi.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117649988	117649988	+	Intron	SNP	T	C	C	rs581235	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr6:117649988T>C	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117714346	117714346	+	Intron	SNP	C	G	G	rs1535330	by1000genomes	2012-1351:2012-338-T	g.chr6:117714346C>G	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117718303	117718303	+	Intron	SNP	A	G	G	rs9401003	by1000genomes	2012-1351:2012-338-T	g.chr6:117718303A>G	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117730819	117730819	+	Intron	SNP	G	A	A	rs2273601	by1000genomes	2012-1351:2012-338-T	g.chr6:117730819G>A	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117737390	117737390	+	Intron	SNP	G	A	A	rs2243	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr6:117737390G>A	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
SYNE1	23345	broad.mit.edu	37	6	152522812	152522812	+	Intron	SNP	T	G	G	rs2673776	by1000genomes	2012-1351:2012-338-T	g.chr6:152522812T>G	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152523143	152523143	+	Intron	SNP	G	A	A	rs2635441	by1000genomes	2012-1351:2012-338-T	g.chr6:152523143G>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152534947	152534947	+	Intron	SNP	T	A	A	rs2763029	by1000genomes	2012-1351:2012-338-T	g.chr6:152534947T>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152560916	152560916	+	Intron	SNP	G	A	A	rs9479275	by1000genomes	2012-1351:2012-338-T	g.chr6:152560916G>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152603139	152603139	+	Intron	SNP	T	C	C	rs9478310	by1000genomes	2012-1351:2012-338-T	g.chr6:152603139T>C	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kiy.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152707063	152707063	+	Intron	SNP	C	T	T	rs9478329	by1000genomes	2012-1351:2012-338-T	g.chr6:152707063C>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
RAC1	5879	broad.mit.edu	37	7	6415613	6415613	+	Intron	SNP	A	C	C	rs34762204	by1000genomes	2012-1351:2012-338-T	g.chr7:6415613A>C	uc003spx.2	+						RAC1_uc003spw.2_Intron	NM_006908	NP_008839
ETV1	2115	broad.mit.edu	37	7	13949199	13949199	+	Intron	SNP	G	A	A			2012-1351:2012-338-T	g.chr7:13949199G>A	uc011jxq.1	-						ETV1_uc011jxn.1_Intron|ETV1_uc011jxo.1_Intron|ETV1_uc011jxp.1_Intron|ETV1_uc003ssw.3_Intron|ETV1_uc003ssx.2_Intron|ETV1_uc011jxr.1_Intron|ETV1_uc011jxs.1_Intron|ETV1_uc010ktv.2_Intron	NM_004956	NP_004947
PIK3CG	5294	broad.mit.edu	37	7	106510076	106510076	+	Intron	SNP	A	G	G	rs1526083	byFrequency;by1000genomes	2012-1351:2012-338-T	g.chr7:106510076A>G	uc003vdv.3	+						PIK3CG_uc003vdu.2_Intron|PIK3CG_uc003vdw.2_Intron	NM_002649	NP_002640
PIK3CG	5294	broad.mit.edu	37	7	106521651	106521651	+	Intron	SNP	C	T	T			2012-1351:2012-338-T	g.chr7:106521651C>T	uc003vdv.3	+						PIK3CG_uc003vdu.2_Intron|PIK3CG_uc003vdw.2_Intron	NM_002649	NP_002640
PTPRN2	5799	broad.mit.edu	37	7	157918811	157918811	+	Intron	SNP	A	G	G			2012-1351:2012-338-T	g.chr7:157918811A>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158234573	158234573	+	Intron	SNP	A	G	G	rs28477315		2012-1351:2012-338-T	g.chr7:158234573A>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
NECAB1	64168	broad.mit.edu	37	8	91940311	91940311	+	Intron	SNP	C	T	T	rs7006863	by1000genomes	2012-1351:2012-338-T	g.chr8:91940311C>T	uc011lgg.1	+							NM_022351	NP_071746
NECAB1	64168	broad.mit.edu	37	8	91967800	91967800	+	3'UTR	SNP	G	A	A	rs73694346	by1000genomes	2012-1351:2012-338-T	g.chr8:91967800G>A	uc011lgg.1	+	13					NECAB1_uc003yer.2_3'UTR	NM_022351	NP_071746
UBR5	51366	broad.mit.edu	37	8	103269703	103269703	+	Intron	SNP	T	C	C	rs73283374	by1000genomes	2012-1351:2012-338-T	g.chr8:103269703T>C	uc003ykr.1	-						UBR5_uc003yks.1_Intron|UBR5_uc003ykq.2_Intron	NM_015902	NP_056986
UBR5	51366	broad.mit.edu	37	8	103282518	103282518	+	Intron	SNP	A	G	G	rs2978431	by1000genomes	2012-1351:2012-338-T	g.chr8:103282518A>G	uc003ykr.1	-						UBR5_uc003yks.1_Intron|UBR5_uc003ykq.2_5'Flank	NM_015902	NP_056986
UBR5	51366	broad.mit.edu	37	8	103311667	103311667	+	Intron	SNP	T	G	G	rs36178006	by1000genomes	2012-1351:2012-338-T	g.chr8:103311667T>G	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
UBR5	51366	broad.mit.edu	37	8	103317265	103317265	+	Intron	SNP	A	T	T	rs3018537	by1000genomes	2012-1351:2012-338-T	g.chr8:103317265A>T	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
DPYS	1807	broad.mit.edu	37	8	105404863	105404863	+	Intron	SNP	T	C	C	rs12675680	by1000genomes	2012-1351:2012-338-T	g.chr8:105404863T>C	uc003yly.3	-						DPYS_uc010mcf.1_Intron	NM_001385	NP_001376
CSMD3	114788	broad.mit.edu	37	8	113267771	113267771	+	Intron	SNP	T	C	C	rs1861753	by1000genomes	2012-1351:2012-338-T	g.chr8:113267771T>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113364574	113364574	+	Intron	SNP	T	C	C	rs11775013	by1000genomes	2012-1351:2012-338-T	g.chr8:113364574T>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113485014	113485014	+	Intron	SNP	A	C	C	rs11783041	by1000genomes	2012-1351:2012-338-T	g.chr8:113485014A>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113529233	113529233	+	Intron	SNP	A	G	G	rs2853244	by1000genomes	2012-1351:2012-338-T	g.chr8:113529233A>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113599207	113599207	+	Intron	SNP	A	G	G	rs7460155	by1000genomes	2012-1351:2012-338-T	g.chr8:113599207A>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113599612	113599612	+	Intron	SNP	T	C	C	rs7463638	by1000genomes	2012-1351:2012-338-T	g.chr8:113599612T>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113648931	113648931	+	Intron	SNP	T	C	C	rs4538917	by1000genomes	2012-1351:2012-338-T	g.chr8:113648931T>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
TRAPPC9	83696	broad.mit.edu	37	8	141120653	141120653	+	Intron	SNP	A	G	G			2012-1351:2012-338-T	g.chr8:141120653A>G	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
CD274	29126	broad.mit.edu	37	9	5463243	5463243	+	Intron	SNP	G	A	A	rs7041009	by1000genomes	2012-1351:2012-338-T	g.chr9:5463243G>A	uc003zje.2	+						C9orf46_uc003zjd.2_Intron|CD274_uc011lmb.1_Intron|CD274_uc010mhn.2_Intron|CD274_uc003zjf.2_Intron	NM_014143	NP_054862
CD274	29126	broad.mit.edu	37	9	5465732	5465732	+	Intron	SNP	G	A	A	rs2297137	by1000genomes	2012-1351:2012-338-T	g.chr9:5465732G>A	uc003zje.2	+						C9orf46_uc003zjd.2_Intron|CD274_uc011lmb.1_3'UTR|CD274_uc010mhn.2_Intron|CD274_uc003zjf.2_Intron	NM_014143	NP_054862
CD274	29126	broad.mit.edu	37	9	5468257	5468257	+	3'UTR	SNP	G	C	C	rs4143815	by1000genomes	2012-1351:2012-338-T	g.chr9:5468257G>C	uc003zje.2	+	7					C9orf46_uc003zjd.2_Intron|CD274_uc010mhn.2_RNA|CD274_uc003zjf.2_3'UTR	NM_014143	NP_054862
C9orf46	55848	broad.mit.edu	37	9	5470497	5470497	+	Intron	SNP	A	G	G	rs4742098	by1000genomes	2012-1351:2012-338-T	g.chr9:5470497A>G	uc003zjd.2	-							NM_018465	NP_060935
FANCG	2189	broad.mit.edu	37	9	35077203	35077203	+	Intron	SNP	G	A	A	rs17885726	by1000genomes	2012-1351:2012-338-T	g.chr9:35077203G>A	uc003zwb.1	-						FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_Intron|FANCG_uc011lot.1_Intron	NM_004629	NP_004620
FANCC	2176	broad.mit.edu	37	9	97873339	97873339	+	Intron	SNP	G	A	A	rs879492	by1000genomes	2012-1351:2012-338-T	g.chr9:97873339G>A	uc004avh.2	-						FANCC_uc004avi.3_3'UTR	NM_000136	NP_000127
FANCC	2176	broad.mit.edu	37	9	97873435	97873435	+	Intron	SNP	G	A	A	rs2404457	by1000genomes	2012-1351:2012-338-T	g.chr9:97873435G>A	uc004avh.2	-						FANCC_uc004avi.3_3'UTR	NM_000136	NP_000127
FANCC	2176	broad.mit.edu	37	9	97873957	97873957	+	Intron	SNP	A	G	G	rs4647534	by1000genomes	2012-1351:2012-338-T	g.chr9:97873957A>G	uc004avh.2	-						FANCC_uc004avi.3_Intron	NM_000136	NP_000127
FANCC	2176	broad.mit.edu	37	9	97933252	97933252	+	Intron	SNP	T	C	C	rs3737142	by1000genomes	2012-1351:2012-338-T	g.chr9:97933252T>C	uc004avh.2	-						FANCC_uc004avi.3_Intron|FANCC_uc010mrm.1_Intron|FANCC_uc011lul.1_Intron	NM_000136	NP_000127
TSC1	7248	broad.mit.edu	37	9	135776034	135776034	+	Intron	SNP	C	T	T	rs1076160	by1000genomes	2012-1351:2012-338-T	g.chr9:135776034C>T	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359
NOTCH1	4851	broad.mit.edu	37	9	139393162	139393162	+	Intron	SNP	G	A	A	rs3124592	by1000genomes	2012-1351:2012-338-T	g.chr9:139393162G>A	uc004chz.2	-							NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139393175	139393175	+	Intron	SNP	A	G	G	rs3124593	by1000genomes	2012-1351:2012-338-T	g.chr9:139393175A>G	uc004chz.2	-							NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139395473	139395473	+	Intron	SNP	C	T	T	rs3124999	by1000genomes	2012-1351:2012-338-T	g.chr9:139395473C>T	uc004chz.2	-							NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139396408	139396408	+	Intron	SNP	A	G	G	rs3124594	by1000genomes	2012-1351:2012-338-T	g.chr9:139396408A>G	uc004chz.2	-							NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139397557	139397557	+	Intron	SNP	C	G	G	rs34383263	by1000genomes	2012-1351:2012-338-T	g.chr9:139397557C>G	uc004chz.2	-						NOTCH1_uc004cia.1_Silent_p.L978L	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139397707	139397707	+	Silent	SNP	G	A	A	rs10521	by1000genomes	2012-1351:2012-338-T	g.chr9:139397707G>A	uc004chz.2	-	27	5094	c.5094C>T	c.(5092-5094)GAC>GAT	p.D1698D	NOTCH1_uc004cia.1_Silent_p.D928D	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139400406	139400406	+	Intron	SNP	C	T	T	rs11145764	by1000genomes	2012-1351:2012-338-T	g.chr9:139400406C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139400904	139400904	+	Intron	SNP	C	T	T	rs4880098	by1000genomes	2012-1351:2012-338-T	g.chr9:139400904C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139401504	139401504	+	Intron	SNP	G	A	A	rs3124596	by1000genomes	2012-1351:2012-338-T	g.chr9:139401504G>A	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139401577	139401577	+	Intron	SNP	C	G	G	rs3829116	by1000genomes	2012-1351:2012-338-T	g.chr9:139401577C>G	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139402663	139402663	+	Intron	SNP	T	C	C	rs3124597	by1000genomes	2012-1351:2012-338-T	g.chr9:139402663T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139402908	139402908	+	Intron	SNP	T	C	C	rs3812603	by1000genomes	2012-1351:2012-338-T	g.chr9:139402908T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139402959	139402959	+	Intron	SNP	A	G	G	rs3812604	by1000genomes	2012-1351:2012-338-T	g.chr9:139402959A>G	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139403268	139403268	+	Intron	SNP	T	C	C	rs3125000	by1000genomes	2012-1351:2012-338-T	g.chr9:139403268T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139403280	139403280	+	Intron	SNP	C	T	T	rs11145765	by1000genomes	2012-1351:2012-338-T	g.chr9:139403280C>T	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139403554	139403554	+	Intron	SNP	T	C	C	rs3124598	by1000genomes	2012-1351:2012-338-T	g.chr9:139403554T>C	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139405361	139405361	+	Intron	SNP	A	G	G	rs3125002	by1000genomes	2012-1351:2012-338-T	g.chr9:139405361A>G	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139405501	139405501	+	Intron	SNP	A	G	G	rs9411206	by1000genomes	2012-1351:2012-338-T	g.chr9:139405501A>G	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139408756	139408756	+	Intron	SNP	A	G	G	rs3125005	by1000genomes	2012-1351:2012-338-T	g.chr9:139408756A>G	uc004chz.2	-						NOTCH1_uc004cia.1_5'Flank	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139408892	139408892	+	Intron	SNP	C	T	T	rs3812609	by1000genomes	2012-1351:2012-338-T	g.chr9:139408892C>T	uc004chz.2	-						NOTCH1_uc004cia.1_5'Flank	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139409648	139409648	+	Intron	SNP	G	A	A	rs62579232	by1000genomes	2012-1351:2012-338-T	g.chr9:139409648G>A	uc004chz.2	-						NOTCH1_uc004cia.1_5'Flank	NM_017617	NP_060087
NOTCH1	4851	broad.mit.edu	37	9	139411880	139411880	+	Intron	SNP	G	A	A	rs9411254	by1000genomes	2012-1351:2012-338-T	g.chr9:139411880G>A	uc004chz.2	-							NM_017617	NP_060087
PPP2R3B	28227	broad.mit.edu	37	X	304908	304908	+	Intron	SNP	A	G	G			2012-1351:2012-338-T	g.chrX:304908A>G	uc004cpg.2	-						PPP2R3B_uc004cpf.2_5'Flank	NM_013239	NP_037371
HUWE1	10075	broad.mit.edu	37	X	53607754	53607754	+	Intron	SNP	A	C	C	rs266786	by1000genomes	2012-1351:2012-338-T	g.chrX:53607754A>C	uc004dsp.2	-						HUWE1_uc004dsn.2_Intron	NM_031407	NP_113584
HUWE1	10075	broad.mit.edu	37	X	53622078	53622078	+	Intron	SNP	T	A	A	rs1244413	by1000genomes	2012-1351:2012-338-T	g.chrX:53622078T>A	uc004dsp.2	-						HUWE1_uc004dsn.2_5'Flank	NM_031407	NP_113584
HEPH	9843	broad.mit.edu	37	X	65382685	65382685	+	5'UTR	SNP	T	C	C	rs5919015	by1000genomes	2012-1351:2012-338-T	g.chrX:65382685T>C	uc011moz.1	+	1					HEPH_uc004dwn.2_5'Flank|HEPH_uc004dwo.2_5'Flank|HEPH_uc010nkr.2_5'Flank	NM_138737	NP_620074
HEPH	9843	broad.mit.edu	37	X	65389932	65389932	+	Intron	SNP	G	A	A	rs60273039	by1000genomes	2012-1351:2012-338-T	g.chrX:65389932G>A	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_5'UTR	NM_138737	NP_620074
HEPH	9843	broad.mit.edu	37	X	65390593	65390593	+	Intron	SNP	C	A	A	rs137910006	by1000genomes	2012-1351:2012-338-T	g.chrX:65390593C>A	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
HEPH	9843	broad.mit.edu	37	X	65390966	65390966	+	Intron	SNP	C	A	A	rs5965106	by1000genomes	2012-1351:2012-338-T	g.chrX:65390966C>A	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
HEPH	9843	broad.mit.edu	37	X	65408445	65408445	+	Intron	SNP	C	T	T	rs6624875	by1000genomes	2012-1351:2012-338-T	g.chrX:65408445C>T	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
NRK	203447	broad.mit.edu	37	X	105152727	105152727	+	Missense_Mutation	SNP	C	T	T			2012-1351:2012-338-T	g.chrX:105152727C>T	uc004emd.2	+	13	1397	c.1094C>T	c.(1093-1095)TCT>TTT	p.S365F	NRK_uc010npc.1_Missense_Mutation_p.S33F	NM_198465	NP_940867
NKAP	79576	broad.mit.edu	37	X	119070411	119070411	+	Intron	SNP	T	A	A	rs112414769		2012-1351:2012-338-T	g.chrX:119070411T>A	uc004esh.2	-						NKAP_uc004esg.2_Intron	NM_024528	NP_078804
SCNN1D	6339	broad.mit.edu	37	1	1223882	1223882	+	Intron	SNP	T	C	C			2012-1356:2012-351-T	g.chr1:1223882T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
CASZ1	54897	broad.mit.edu	37	1	10776094	10776094	+	Intron	SNP	A	C	C			2012-1356:2012-351-T	g.chr1:10776094A>C	uc001aro.2	-						CASZ1_uc001arp.1_Intron	NM_001079843	NP_001073312
PTCHD2	57540	broad.mit.edu	37	1	11582858	11582858	+	Intron	SNP	C	A	A			2012-1356:2012-351-T	g.chr1:11582858C>A	uc001ash.3	+						PTCHD2_uc001asi.1_Intron	NM_020780	NP_065831
FLG	2312	broad.mit.edu	37	1	152281671	152281671	+	Missense_Mutation	SNP	G	T	T			2012-1356:2012-351-T	g.chr1:152281671G>T	uc001ezu.1	-	3	5727	c.5691C>A	c.(5689-5691)CAC>CAA	p.H1897Q		NM_002016	NP_002007
SMYD3	64754	broad.mit.edu	37	1	246139487	246139487	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr1:246139487G>A	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
OR8H1	219469	broad.mit.edu	37	11	56058521	56058521	+	Missense_Mutation	SNP	G	T	T			2012-1356:2012-351-T	g.chr11:56058521G>T	uc010rje.1	-	1	18	c.18C>A	c.(16-18)AAC>AAA	p.N6K		NM_001005199	NP_001005199
MTA2	9219	broad.mit.edu	37	11	62364110	62364110	+	Missense_Mutation	SNP	A	G	G			2012-1356:2012-351-T	g.chr11:62364110A>G	uc001ntq.1	-	9	1262	c.881T>C	c.(880-882)TTT>TCT	p.F294S	MTA2_uc010rlx.1_Missense_Mutation_p.F121S	NM_004739	NP_004730
MACROD1	28992	broad.mit.edu	37	11	63777552	63777552	+	Intron	SNP	A	G	G			2012-1356:2012-351-T	g.chr11:63777552A>G	uc001nyh.2	-							NM_014067	NP_054786
B4GALNT3	283358	broad.mit.edu	37	12	620885	620885	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr12:620885C>T	uc001qii.1	+							NM_173593	NP_775864
MLL2	8085	broad.mit.edu	37	12	49424059	49424059	+	Intron	SNP	T	C	C			2012-1356:2012-351-T	g.chr12:49424059T>C	uc001rta.3	-							NM_003482	NP_003473
TMEM120B	144404	broad.mit.edu	37	12	122185451	122185451	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr12:122185451C>T	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
GALNT9	50614	broad.mit.edu	37	12	132881968	132881968	+	Intron	SNP	C	G	G			2012-1356:2012-351-T	g.chr12:132881968C>G	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
ATP11A	23250	broad.mit.edu	37	13	113527683	113527683	+	Intron	SNP	G	A	A	rs61961612	by1000genomes	2012-1356:2012-351-T	g.chr13:113527683G>A	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc010ago.2_Intron	NM_015205	NP_056020
F7	2155	broad.mit.edu	37	13	113761653	113761653	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr13:113761653G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113762077	113762077	+	Intron	SNP	C	G	G			2012-1356:2012-351-T	g.chr13:113762077C>G	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
GRK1	6011	broad.mit.edu	37	13	114431122	114431122	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr13:114431122G>A	uc010tkf.1	+							NM_002929	NP_002920
TRIP11	9321	broad.mit.edu	37	14	92506677	92506677	+	5'UTR	SNP	C	T	T			2012-1356:2012-351-T	g.chr14:92506677C>T	uc001xzy.2	-	1					TRIP11_uc001xzz.3_RNA	NM_004239	NP_004230
ATP10A	57194	broad.mit.edu	37	15	26003909	26003909	+	Intron	SNP	G	T	T			2012-1356:2012-351-T	g.chr15:26003909G>T	uc010ayu.2	-							NM_024490	NP_077816
LMF1	64788	broad.mit.edu	37	16	907583	907583	+	Intron	SNP	C	T	T	rs144035372		2012-1356:2012-351-T	g.chr16:907583C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	907606	907606	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr16:907606C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
C1QTNF8	390664	broad.mit.edu	37	16	1143110	1143110	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr16:1143110C>T	uc010uuw.1	-							NM_207419	NP_997302
TP53	7157	broad.mit.edu	37	17	7578188	7578188	+	Nonsense_Mutation	SNP	C	A	A			2012-1356:2012-351-T	g.chr17:7578188C>A	uc002gim.2	-	6	855	c.661G>T	c.(661-663)GAG>TAG	p.E221*	TP53_uc002gig.1_Nonsense_Mutation_p.E221*|TP53_uc002gih.2_Nonsense_Mutation_p.E221*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.E89*|TP53_uc010cng.1_Nonsense_Mutation_p.E89*|TP53_uc002gii.1_Nonsense_Mutation_p.E89*|TP53_uc010cnh.1_Nonsense_Mutation_p.E221*|TP53_uc010cni.1_Nonsense_Mutation_p.E221*|TP53_uc002gij.2_Nonsense_Mutation_p.E221*|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Nonsense_Mutation_p.E128*|TP53_uc002gio.2_Nonsense_Mutation_p.E89*|TP53_uc010vug.1_Nonsense_Mutation_p.E182*	NM_001126112	NP_001119584
PRKCA	5578	broad.mit.edu	37	17	64795197	64795197	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr17:64795197G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795431	64795431	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr17:64795431G>A	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795437	64795437	+	Intron	SNP	A	G	G			2012-1356:2012-351-T	g.chr17:64795437A>G	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795452	64795452	+	Intron	SNP	A	G	G			2012-1356:2012-351-T	g.chr17:64795452A>G	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795458	64795458	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr17:64795458G>A	uc002jfp.1	+							NM_002737	NP_002728
GALR1	2587	broad.mit.edu	37	18	74964894	74964894	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr18:74964894C>T	uc002lms.3	+							NM_001480	NP_001471
ETFB	2109	broad.mit.edu	37	19	51849228	51849228	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr19:51849228C>T	uc002pwh.2	-						ETFB_uc002pwg.2_Intron	NM_001985	NP_001976
VN1R4	317703	broad.mit.edu	37	19	53770966	53770966	+	5'Flank	SNP	T	A	A			2012-1356:2012-351-T	g.chr19:53770966T>A	uc010ydu.1	-							NM_173857	NP_776256
RMND5A	64795	broad.mit.edu	37	2	87016340	87016340	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr2:87016340G>A	uc002srs.3	+						CD8A_uc002srv.2_Intron|CD8A_uc010ytn.1_Intron|CD8A_uc002srt.2_Intron|CD8A_uc002sru.2_Intron		
RMND5A	64795	broad.mit.edu	37	2	87623577	87623577	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr2:87623577C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87642577	87642577	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr2:87642577G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87642929	87642929	+	Intron	SNP	C	G	G			2012-1356:2012-351-T	g.chr2:87642929C>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644457	87644457	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr2:87644457C>T	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644462	87644462	+	Intron	SNP	T	G	G			2012-1356:2012-351-T	g.chr2:87644462T>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87651707	87651707	+	Intron	SNP	A	G	G			2012-1356:2012-351-T	g.chr2:87651707A>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87651727	87651727	+	Intron	SNP	G	A	A			2012-1356:2012-351-T	g.chr2:87651727G>A	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179632639	179632639	+	Missense_Mutation	SNP	C	A	A			2012-1356:2012-351-T	g.chr2:179632639C>A	uc010zfg.1	-	40	9542	c.9318G>T	c.(9316-9318)CAG>CAT	p.Q3106H	TTN_uc010zfh.1_Missense_Mutation_p.Q3060H|TTN_uc010zfi.1_Missense_Mutation_p.Q3060H|TTN_uc010zfj.1_Missense_Mutation_p.Q3060H|TTN_uc002unb.2_Missense_Mutation_p.Q3106H	NM_133378	NP_596869
AGAP1	116987	broad.mit.edu	37	2	236413015	236413015	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr2:236413015C>T	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
GPR35	2859	broad.mit.edu	37	2	241565321	241565321	+	Intron	SNP	G	T	T			2012-1356:2012-351-T	g.chr2:241565321G>T	uc010fzh.1	+						GPR35_uc010fzi.1_Intron	NM_005301	NP_005292
KIF1A	547	broad.mit.edu	37	2	241720703	241720703	+	Intron	SNP	T	C	C			2012-1356:2012-351-T	g.chr2:241720703T>C	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
PLCB1	23236	broad.mit.edu	37	20	8770180	8770180	+	Missense_Mutation	SNP	G	T	T			2012-1356:2012-351-T	g.chr20:8770180G>T	uc002wnb.2	+	30	3297	c.3294G>T	c.(3292-3294)ATG>ATT	p.M1098I	PLCB1_uc002wna.2_Missense_Mutation_p.M1098I	NM_015192	NP_056007
MLH1	4292	broad.mit.edu	37	3	37061957	37061957	+	Intron	SNP	C	G	G			2012-1356:2012-351-T	g.chr3:37061957C>G	uc003cgl.2	+						MLH1_uc011aye.1_Intron|MLH1_uc011ayb.1_Intron|MLH1_uc010hge.2_Intron|MLH1_uc003cgn.3_Intron|MLH1_uc011ayc.1_Intron|MLH1_uc011ayd.1_Intron|MLH1_uc003cgo.2_Intron|MLH1_uc010hgg.1_Intron|MLH1_uc010hgh.1_Intron|MLH1_uc010hgi.1_Intron|MLH1_uc010hgj.1_Intron|MLH1_uc010hgk.2_Intron|MLH1_uc010hgl.1_Intron	NM_000249	NP_000240
FAM53A	152877	broad.mit.edu	37	4	1672738	1672738	+	Intron	SNP	A	C	C			2012-1356:2012-351-T	g.chr4:1672738A>C	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
DSPP	1834	broad.mit.edu	37	4	88537475	88537475	+	Missense_Mutation	SNP	G	A	A			2012-1356:2012-351-T	g.chr4:88537475G>A	uc003hqu.2	+	5	3781	c.3661G>A	c.(3661-3663)GAC>AAC	p.D1221N		NM_014208	NP_055023
PIK3R1	5295	broad.mit.edu	37	5	67522314	67522314	+	5'UTR	SNP	G	A	A			2012-1356:2012-351-T	g.chr5:67522314G>A	uc003jva.2	+	2					PIK3R1_uc003jvb.2_5'Flank	NM_181523	NP_852664
SCML4	256380	broad.mit.edu	37	6	108103841	108103841	+	Intron	SNP	C	G	G	rs34206879	by1000genomes	2012-1356:2012-351-T	g.chr6:108103841C>G	uc010kdf.2	-						SCML4_uc003prz.3_Intron|SCML4_uc011eam.1_Intron	NM_198081	NP_932347
SYNE1	23345	broad.mit.edu	37	6	152539487	152539487	+	Missense_Mutation	SNP	C	T	T			2012-1356:2012-351-T	g.chr6:152539487C>T	uc010kiw.2	-	121	22698	c.22096G>A	c.(22096-22098)GCC>ACC	p.A7366T	SYNE1_uc010kiv.2_Missense_Mutation_p.A1890T|SYNE1_uc003qos.3_Missense_Mutation_p.A1890T|SYNE1_uc003qot.3_Missense_Mutation_p.A7295T|SYNE1_uc003qou.3_Missense_Mutation_p.A7366T|SYNE1_uc003qor.3_Missense_Mutation_p.A266T	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169016298	169016298	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr6:169016298C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169016327	169016327	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr6:169016327C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
MAD1L1	8379	broad.mit.edu	37	7	2099942	2099942	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr7:2099942C>T	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
THSD7A	221981	broad.mit.edu	37	7	11675931	11675931	+	Missense_Mutation	SNP	C	A	A			2012-1356:2012-351-T	g.chr7:11675931C>A	uc003ssf.3	-	2	1100	c.848G>T	c.(847-849)CGG>CTG	p.R283L		NM_015204	NP_056019
PTPRN2	5799	broad.mit.edu	37	7	157944173	157944173	+	Intron	SNP	T	C	C	rs62480241		2012-1356:2012-351-T	g.chr7:157944173T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158316438	158316438	+	Intron	SNP	G	A	A	rs111510963		2012-1356:2012-351-T	g.chr7:158316438G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
CSMD3	114788	broad.mit.edu	37	8	113277887	113277887	+	Intron	SNP	C	T	T			2012-1356:2012-351-T	g.chr8:113277887C>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
VAV2	7410	broad.mit.edu	37	9	136692549	136692549	+	Intron	SNP	A	G	G			2012-1356:2012-351-T	g.chr9:136692549A>G	uc004ces.2	-						VAV2_uc004cer.2_Intron	NM_001134398	NP_001127870
EHMT1	79813	broad.mit.edu	37	9	140615947	140615947	+	Intron	SNP	T	C	C			2012-1356:2012-351-T	g.chr9:140615947T>C	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
MTOR	2475	broad.mit.edu	37	1	11292531	11292531	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr1:11292531C>A	uc001asd.2	-	16	2597	c.2476G>T	c.(2476-2478)GAC>TAC	p.D826Y		NM_004958	NP_004949
EPHA2	1969	broad.mit.edu	37	1	16451603	16451603	+	3'UTR	SNP	G	A	A			2012-693:2012-1306-T	g.chr1:16451603G>A	uc001aya.1	-	17						NM_004431	NP_004422
MACF1	23499	broad.mit.edu	37	1	39752985	39752985	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr1:39752985C>A	uc010ois.1	+	16	1756	c.1551C>A	c.(1549-1551)GTC>GTA	p.V517V	MACF1_uc001cda.1_Silent_p.V425V	NM_012090	NP_036222
JAK1	3716	broad.mit.edu	37	1	65304175	65304175	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr1:65304175C>A	uc001dbu.1	-	21	3189	c.2940G>T	c.(2938-2940)CAG>CAT	p.Q980H	JAK1_uc009wam.1_Missense_Mutation_p.Q968H|JAK1_uc009wal.1_Missense_Mutation_p.Q157H	NM_002227	NP_002218
JAK1	3716	broad.mit.edu	37	1	65313272	65313272	+	Silent	SNP	C	T	T			2012-693:2012-1306-T	g.chr1:65313272C>T	uc001dbu.1	-	13	2091	c.1842G>A	c.(1840-1842)GAG>GAA	p.E614E	JAK1_uc009wam.1_Silent_p.E602E|JAK1_uc009wal.1_5'Flank	NM_002227	NP_002218
COL11A1	1301	broad.mit.edu	37	1	103496681	103496681	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr1:103496681C>A	uc001dul.2	-	5	1089	c.771G>T	c.(769-771)CAG>CAT	p.Q257H	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.Q257H|COL11A1_uc001dun.2_Missense_Mutation_p.Q257H|COL11A1_uc009weh.2_Missense_Mutation_p.Q257H	NM_001854	NP_001845
FLG2	388698	broad.mit.edu	37	1	152327506	152327506	+	Missense_Mutation	SNP	T	A	A			2012-693:2012-1306-T	g.chr1:152327506T>A	uc001ezw.3	-	3	2829	c.2756A>T	c.(2755-2757)CAG>CTG	p.Q919L	uc001ezv.2_Intron	NM_001014342	NP_001014364
TPM3	7170	broad.mit.edu	37	1	154165082	154165082	+	5'Flank	SNP	C	A	A			2012-693:2012-1306-T	g.chr1:154165082C>A	uc001fec.1	-							NM_152263	NP_689476
FAM5B	57795	broad.mit.edu	37	1	177140316	177140316	+	5'Flank	SNP	T	G	G			2012-693:2012-1306-T	g.chr1:177140316T>G	uc001glf.2	+							NM_021165	NP_066988
PIK3C2B	5287	broad.mit.edu	37	1	204396902	204396902	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr1:204396902C>A	uc001haw.2	-						PIK3C2B_uc010pqv.1_Intron	NM_002646	NP_002637
SMYD3	64754	broad.mit.edu	37	1	246139275	246139275	+	Intron	SNP	C	T	T			2012-693:2012-1306-T	g.chr1:246139275C>T	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
SMYD3	64754	broad.mit.edu	37	1	246139312	246139312	+	Intron	SNP	C	T	T			2012-693:2012-1306-T	g.chr1:246139312C>T	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
NRAP	4892	broad.mit.edu	37	10	115381634	115381634	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr10:115381634C>A	uc001laj.2	-	24	2927	c.2763G>T	c.(2761-2763)CAG>CAT	p.Q921H	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Missense_Mutation_p.Q886H|NRAP_uc001lal.3_Missense_Mutation_p.Q921H	NM_198060	NP_932326
OR8H3	390152	broad.mit.edu	37	11	55889998	55889998	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr11:55889998C>A	uc001nii.1	+	1	150	c.150C>A	c.(148-150)ATC>ATA	p.I50I		NM_001005201	NP_001005201
OR8K1	390157	broad.mit.edu	37	11	56113814	56113814	+	Nonsense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr11:56113814C>A	uc010rjg.1	+	1	300	c.300C>A	c.(298-300)TAC>TAA	p.Y100*		NM_001002907	NP_001002907
MAML2	84441	broad.mit.edu	37	11	96076692	96076692	+	5'Flank	SNP	C	A	A			2012-693:2012-1306-T	g.chr11:96076692C>A	uc001pfw.1	-							NM_032427	NP_115803
UBE4A	9354	broad.mit.edu	37	11	118235863	118235863	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr11:118235863C>A	uc001psw.2	+	2	197	c.68C>A	c.(67-69)GCT>GAT	p.A23D	UBE4A_uc001psv.2_Missense_Mutation_p.A23D	NM_004788	NP_004779
SLC2A13	114134	broad.mit.edu	37	12	40154000	40154000	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr12:40154000C>A	uc010skm.1	-	10	1826	c.1775G>T	c.(1774-1776)GGC>GTC	p.G592V	C12orf40_uc009zjv.1_Intron	NM_052885	NP_443117
NELL2	4753	broad.mit.edu	37	12	45004687	45004687	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr12:45004687C>A	uc001rog.2	-	14	2106	c.1511G>T	c.(1510-1512)GGA>GTA	p.G504V	NELL2_uc001rof.3_Missense_Mutation_p.G503V|NELL2_uc001roh.2_Missense_Mutation_p.G504V|NELL2_uc009zkd.2_Missense_Mutation_p.G503V|NELL2_uc010skz.1_Missense_Mutation_p.G554V|NELL2_uc010sla.1_Missense_Mutation_p.G527V|NELL2_uc001roi.1_Missense_Mutation_p.G504V|NELL2_uc010slb.1_Missense_Mutation_p.G503V	NM_001145108	NP_001138580
ERBB3	2065	broad.mit.edu	37	12	56473425	56473425	+	5'Flank	SNP	T	G	G			2012-693:2012-1306-T	g.chr12:56473425T>G	uc001sjh.2	+						ERBB3_uc009zoj.2_5'Flank|ERBB3_uc010sqb.1_5'Flank|ERBB3_uc001sjg.2_5'Flank	NM_001982	NP_001973
MDM2	4193	broad.mit.edu	37	12	69210757	69210757	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr12:69210757C>A	uc001sui.2	+						MDM2_uc009zri.2_Intron|MDM2_uc009zqx.2_Intron|MDM2_uc009zqw.2_Intron|MDM2_uc001suk.2_Intron|MDM2_uc009zqy.1_Intron|MDM2_uc001sun.3_Intron|MDM2_uc009zqz.2_Intron|MDM2_uc009zra.2_Intron|MDM2_uc001sum.1_Intron|MDM2_uc009zrd.2_Intron|MDM2_uc009zrc.2_Intron|MDM2_uc009zre.2_Intron|MDM2_uc009zrf.2_Intron|MDM2_uc001suo.2_Intron|MDM2_uc009zrg.2_Intron|MDM2_uc009zrh.2_Intron	NM_002392	NP_002383
E2F7	144455	broad.mit.edu	37	12	77421703	77421703	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr12:77421703C>A	uc001sym.3	-	11	2336	c.2100G>T	c.(2098-2100)GAG>GAT	p.E700D	E2F7_uc009zse.2_Missense_Mutation_p.E187D	NM_203394	NP_976328
E2F7	144455	broad.mit.edu	37	12	77423878	77423878	+	Silent	SNP	T	G	G			2012-693:2012-1306-T	g.chr12:77423878T>G	uc001sym.3	-	10	1853	c.1617A>C	c.(1615-1617)GCA>GCC	p.A539A	E2F7_uc009zse.2_Silent_p.A26A	NM_203394	NP_976328
NAV3	89795	broad.mit.edu	37	12	78598796	78598796	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr12:78598796C>A	uc001syp.2	+	39	7089	c.6916C>A	c.(6916-6918)CAG>AAG	p.Q2306K	NAV3_uc001syo.2_Missense_Mutation_p.Q2284K|NAV3_uc010sub.1_Missense_Mutation_p.Q1763K|NAV3_uc009zsf.2_Missense_Mutation_p.Q1115K	NM_014903	NP_055718
TDRD3	81550	broad.mit.edu	37	13	60971006	60971006	+	5'UTR	SNP	C	A	A			2012-693:2012-1306-T	g.chr13:60971006C>A	uc001via.2	+	1					TDRD3_uc010aef.2_5'UTR|TDRD3_uc001vhz.3_5'UTR|TDRD3_uc010aeg.2_5'Flank	NM_030794	NP_110421
PAX9	5083	broad.mit.edu	37	14	37126326	37126326	+	5'Flank	SNP	C	A	A	rs78933923	by1000genomes	2012-693:2012-1306-T	g.chr14:37126326C>A	uc001wty.3	+							NM_006194	NP_006185
LRFN5	145581	broad.mit.edu	37	14	42360709	42360709	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr14:42360709C>A	uc001wvm.2	+	4	2840	c.1642C>A	c.(1642-1644)CTG>ATG	p.L548M	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660
NIN	51199	broad.mit.edu	37	14	51223776	51223776	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr14:51223776C>A	uc001wym.2	-	18	4163	c.3972G>T	c.(3970-3972)CTG>CTT	p.L1324L	NIN_uc001wyi.2_Silent_p.L1324L|NIN_uc001wyj.2_Intron|NIN_uc001wyk.2_Intron|NIN_uc010tqp.1_Silent_p.L1330L|NIN_uc001wyo.2_Silent_p.L1324L	NM_182946	NP_891991
SPTLC2	9517	broad.mit.edu	37	14	78036776	78036776	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr14:78036776C>A	uc001xub.2	-	5	895	c.707G>T	c.(706-708)GGC>GTC	p.G236V		NM_004863	NP_004854
SPTLC2	9517	broad.mit.edu	37	14	78063560	78063560	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr14:78063560C>A	uc001xub.2	-	2	484	c.296G>T	c.(295-297)TGT>TTT	p.C99F		NM_004863	NP_004854
UBE3A	7337	broad.mit.edu	37	15	25616084	25616084	+	Nonsense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr15:25616084C>A	uc001zaq.2	-	4	1246	c.1246G>T	c.(1246-1248)GAA>TAA	p.E416*	uc001zae.2_Intron|UBE3A_uc001zar.2_Nonsense_Mutation_p.E393*|UBE3A_uc001zas.2_Nonsense_Mutation_p.E413*|UBE3A_uc001zat.2_Nonsense_Mutation_p.E393*	NM_000462	NP_000453
LMF1	64788	broad.mit.edu	37	16	909309	909309	+	Intron	SNP	C	T	T			2012-693:2012-1306-T	g.chr16:909309C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
RPL3L	6123	broad.mit.edu	37	16	1999991	1999991	+	Intron	SNP	A	G	G	rs112299600		2012-693:2012-1306-T	g.chr16:1999991A>G	uc002cnh.2	-							NM_005061	NP_005052
CREBBP	1387	broad.mit.edu	37	16	3786004	3786004	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr16:3786004C>A	uc002cvv.2	-						CREBBP_uc002cvw.2_Intron	NM_004380	NP_004371
CREBBP	1387	broad.mit.edu	37	16	3843503	3843503	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr16:3843503C>A	uc002cvv.2	-	4	1304	c.1100G>T	c.(1099-1101)TGT>TTT	p.C367F	CREBBP_uc002cvw.2_Missense_Mutation_p.C367F	NM_004380	NP_004371
MYH11	4629	broad.mit.edu	37	16	15818212	15818212	+	Nonsense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr16:15818212C>A	uc002ddy.2	-	31	4278	c.4171G>T	c.(4171-4173)GAA>TAA	p.E1391*	MYH11_uc002ddv.2_Nonsense_Mutation_p.E1398*|MYH11_uc002ddw.2_Nonsense_Mutation_p.E1391*|MYH11_uc002ddx.2_Nonsense_Mutation_p.E1398*|MYH11_uc010bvg.2_Nonsense_Mutation_p.E1223*|NDE1_uc010uzy.1_3'UTR|NDE1_uc002dds.2_3'UTR|MYH11_uc010bvh.2_Nonsense_Mutation_p.E97*|NDE1_uc002ddz.1_RNA	NM_002474	NP_002465
PHLPP2	23035	broad.mit.edu	37	16	71748476	71748476	+	Nonsense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr16:71748476C>A	uc002fax.2	-	1	229	c.223G>T	c.(223-225)GAA>TAA	p.E75*	PHLPP2_uc010cgf.2_Nonsense_Mutation_p.E75*|PHLPP2_uc002fay.1_Nonsense_Mutation_p.E75*	NM_015020	NP_055835
PRDM7	11105	broad.mit.edu	37	16	90141862	90141862	+	Missense_Mutation	SNP	G	T	T			2012-693:2012-1306-T	g.chr16:90141862G>T	uc010cje.2	-	2	110	c.90C>A	c.(88-90)GAC>GAA	p.D30E	PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjh.1_RNA	NM_001098173	NP_001091643
RPH3AL	9501	broad.mit.edu	37	17	157153	157153	+	Intron	SNP	T	C	C			2012-693:2012-1306-T	g.chr17:157153T>C	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	959263	959263	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:959263C>A	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010vqg.1_Intron|ABR_uc002fsg.2_Intron|ABR_uc002fsh.1_Intron	NM_021962	NP_068781
MYH13	8735	broad.mit.edu	37	17	10231178	10231178	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:10231178C>A	uc002gmk.1	-							NM_003802	NP_003793
MYH4	4622	broad.mit.edu	37	17	10356553	10356553	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:10356553C>A	uc002gmn.2	-	24	3138	c.3027G>T	c.(3025-3027)CAG>CAT	p.Q1009H	uc002gml.1_Intron	NM_017533	NP_060003
MYH4	4622	broad.mit.edu	37	17	10359090	10359090	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:10359090C>A	uc002gmn.2	-						uc002gml.1_Intron	NM_017533	NP_060003
NF1	4763	broad.mit.edu	37	17	29587442	29587442	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:29587442C>A	uc002hgg.2	+	34	4819	c.4486C>A	c.(4486-4488)CTT>ATT	p.L1496I	NF1_uc002hgh.2_Missense_Mutation_p.L1475I|NF1_uc002hgi.1_Missense_Mutation_p.L508I	NM_001042492	NP_001035957
NF1	4763	broad.mit.edu	37	17	29654769	29654769	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:29654769C>A	uc002hgg.2	+	38	5854	c.5521C>A	c.(5521-5523)CAA>AAA	p.Q1841K	NF1_uc002hgh.2_Missense_Mutation_p.Q1820K|NF1_uc002hgi.1_Missense_Mutation_p.Q853K|NF1_uc010cso.2_Missense_Mutation_p.Q29K	NM_001042492	NP_001035957
NF1	4763	broad.mit.edu	37	17	29657409	29657409	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:29657409C>A	uc002hgg.2	+	39	6038	c.5705C>A	c.(5704-5706)GCC>GAC	p.A1902D	NF1_uc002hgh.2_Missense_Mutation_p.A1881D|NF1_uc002hgi.1_Missense_Mutation_p.A914D|NF1_uc010cso.2_Missense_Mutation_p.A90D	NM_001042492	NP_001035957
NF1	4763	broad.mit.edu	37	17	29663848	29663848	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:29663848C>A	uc002hgg.2	+	42	6676	c.6343C>A	c.(6343-6345)CCG>ACG	p.P2115T	NF1_uc002hgh.2_Missense_Mutation_p.P2094T|NF1_uc010cso.2_Missense_Mutation_p.P303T|NF1_uc010wbt.1_5'Flank|NF1_uc010wbu.1_5'Flank	NM_001042492	NP_001035957
TUBD1	51174	broad.mit.edu	37	17	57970060	57970060	+	5'UTR	SNP	C	A	A			2012-693:2012-1306-T	g.chr17:57970060C>A	uc002ixw.1	-	1					TUBD1_uc010ddf.1_5'Flank|TUBD1_uc010ddg.1_5'UTR|TUBD1_uc010ddh.1_5'UTR|TUBD1_uc010wok.1_5'UTR|TUBD1_uc002ixx.1_5'UTR|TUBD1_uc010wol.1_5'UTR|TUBD1_uc010ddi.1_5'UTR|RPS6KB1_uc010ddj.1_5'Flank|RPS6KB1_uc002ixy.2_5'Flank|RPS6KB1_uc010wom.1_5'Flank|RPS6KB1_uc010won.1_5'Flank	NM_016261	NP_057345
ZNF521	25925	broad.mit.edu	37	18	22804942	22804942	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr18:22804942C>A	uc002kvk.2	-	4	3187	c.2940G>T	c.(2938-2940)ACG>ACT	p.T980T	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.T980T|ZNF521_uc002kvl.2_Silent_p.T760T	NM_015461	NP_056276
PIK3C3	5289	broad.mit.edu	37	18	39609338	39609338	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr18:39609338C>A	uc002lap.2	+	15	1698	c.1640C>A	c.(1639-1641)ACA>AAA	p.T547K	PIK3C3_uc010xcl.1_Missense_Mutation_p.T484K|PIK3C3_uc002laq.2_Missense_Mutation_p.T32K	NM_002647	NP_002638
KIAA1468	57614	broad.mit.edu	37	18	59931241	59931241	+	Silent	SNP	T	G	G			2012-693:2012-1306-T	g.chr18:59931241T>G	uc002lil.2	+	17	2585	c.2370T>G	c.(2368-2370)CCT>CCG	p.P790P	KIAA1468_uc002lik.1_Silent_p.P790P|KIAA1468_uc010xel.1_Silent_p.P790P|KIAA1468_uc002lim.2_Silent_p.P434P	NM_020854	NP_065905
PHLPP1	23239	broad.mit.edu	37	18	60499708	60499708	+	Intron	SNP	C	T	T			2012-693:2012-1306-T	g.chr18:60499708C>T	uc002lis.2	+							NM_194449	NP_919431
DSEL	92126	broad.mit.edu	37	18	65179628	65179628	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr18:65179628C>A	uc002lke.1	-	2	3472	c.2248G>T	c.(2248-2250)GCT>TCT	p.A750S		NM_032160	NP_115536
ZNF790	388536	broad.mit.edu	37	19	37310818	37310818	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr19:37310818C>A	uc002oew.2	-	5	547	c.428G>T	c.(427-429)CGC>CTC	p.R143L	uc002oev.1_Intron	NM_206894	NP_996777
VN1R4	317703	broad.mit.edu	37	19	53770382	53770382	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr19:53770382C>A	uc010ydu.1	-	1	537	c.537G>T	c.(535-537)CTG>CTT	p.L179L		NM_173857	NP_776256
NLRP11	204801	broad.mit.edu	37	19	56347708	56347708	+	5'UTR	SNP	C	A	A			2012-693:2012-1306-T	g.chr19:56347708C>A	uc010ygf.1	-	1					NLRP4_uc002qmd.3_5'Flank|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444
PEG3	5178	broad.mit.edu	37	19	57325744	57325744	+	Nonsense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr19:57325744C>A	uc002qnu.2	-	7	4417	c.4066G>T	c.(4066-4068)GAA>TAA	p.E1356*	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Nonsense_Mutation_p.E1327*|PEG3_uc002qnv.2_Nonsense_Mutation_p.E1356*|PEG3_uc002qnw.2_Nonsense_Mutation_p.E1232*|PEG3_uc002qnx.2_Nonsense_Mutation_p.E1230*|PEG3_uc010etr.2_Nonsense_Mutation_p.E1356*	NM_001146186	NP_001139658
APOB	338	broad.mit.edu	37	2	21229290	21229290	+	Nonsense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:21229290C>A	uc002red.2	-	26	10578	c.10450G>T	c.(10450-10452)GAA>TAA	p.E3484*		NM_000384	NP_000375
GALNT14	79623	broad.mit.edu	37	2	31361947	31361947	+	5'Flank	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:31361947C>A	uc002rnr.2	-						GALNT14_uc002rns.2_5'Flank|GALNT14_uc010ymr.1_5'Flank|GALNT14_uc010ezo.1_5'Flank|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848
MSH6	2956	broad.mit.edu	37	2	48030803	48030803	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:48030803C>A	uc002rwd.3	+	5	3569	c.3417C>A	c.(3415-3417)GGC>GGA	p.G1139G	MSH6_uc010fbj.2_Silent_p.G837G|MSH6_uc010yoi.1_Silent_p.G1009G|MSH6_uc010yoj.1_Silent_p.G837G	NM_000179	NP_000170
AFF3	3899	broad.mit.edu	37	2	100632935	100632935	+	Intron	SNP	G	T	T			2012-693:2012-1306-T	g.chr2:100632935G>T	uc002tag.2	-						AFF3_uc002taf.2_Intron|AFF3_uc010fiq.1_Intron|AFF3_uc010yvr.1_Intron|AFF3_uc002tah.1_Intron|AFF3_uc010fir.1_Intron	NM_002285	NP_002276
ZEB2	9839	broad.mit.edu	37	2	145156440	145156440	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:145156440C>A	uc002tvu.2	-	8	2794	c.2314G>T	c.(2314-2316)GTT>TTT	p.V772F	ZEB2_uc002tvv.2_Missense_Mutation_p.V766F|ZEB2_uc010zbm.1_Missense_Mutation_p.V743F|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.V801F	NM_014795	NP_055610
TTN	7273	broad.mit.edu	37	2	179419853	179419853	+	Nonsense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179419853C>A	uc010zfg.1	-	280	80853	c.80629G>T	c.(80629-80631)GAA>TAA	p.E26877*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.E20572*|TTN_uc010zfi.1_Nonsense_Mutation_p.E20505*|TTN_uc010zfj.1_Nonsense_Mutation_p.E20380*	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179440946	179440946	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179440946C>A	uc010zfg.1	-	275	62433	c.62209G>T	c.(62209-62211)GAT>TAT	p.D20737Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D14432Y|TTN_uc010zfi.1_Missense_Mutation_p.D14365Y|TTN_uc010zfj.1_Missense_Mutation_p.D14240Y|uc002umv.1_5'Flank	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179451391	179451391	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179451391C>A	uc010zfg.1	-	257	56757	c.56533G>T	c.(56533-56535)GAT>TAT	p.D18845Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D12540Y|TTN_uc010zfi.1_Missense_Mutation_p.D12473Y|TTN_uc010zfj.1_Missense_Mutation_p.D12348Y	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179455554	179455554	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179455554C>A	uc010zfg.1	-	253	53418	c.53194G>T	c.(53194-53196)GGC>TGC	p.G17732C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G11427C|TTN_uc010zfi.1_Missense_Mutation_p.G11360C|TTN_uc010zfj.1_Missense_Mutation_p.G11235C	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179458173	179458173	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179458173C>A	uc010zfg.1	-	248	51282	c.51058G>T	c.(51058-51060)GTT>TTT	p.V17020F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V10715F|TTN_uc010zfi.1_Missense_Mutation_p.V10648F|TTN_uc010zfj.1_Missense_Mutation_p.V10523F	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179476533	179476533	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179476533C>A	uc010zfg.1	-	217	43023	c.42799G>T	c.(42799-42801)GGC>TGC	p.G14267C	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G7962C|TTN_uc010zfi.1_Missense_Mutation_p.G7895C|TTN_uc010zfj.1_Missense_Mutation_p.G7770C	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179560883	179560883	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179560883C>A	uc010zfg.1	-	111	27408	c.27184G>T	c.(27184-27186)GTC>TTC	p.V9062F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V5723F|TTN_uc010fre.1_Missense_Mutation_p.V173F	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179612551	179612551	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179612551C>A	uc002unb.2	-	46	14800	c.14576G>T	c.(14575-14577)TGT>TTT	p.C4859F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870
TTN	7273	broad.mit.edu	37	2	179615314	179615314	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:179615314C>A	uc002unb.2	-	46	12037	c.11813G>T	c.(11812-11814)CGC>CTC	p.R3938L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870
MAP2	4133	broad.mit.edu	37	2	210557739	210557739	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:210557739C>A	uc002vde.1	+	7	1093	c.845C>A	c.(844-846)GCC>GAC	p.A282D	MAP2_uc002vdc.1_Missense_Mutation_p.A282D|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.A278D	NM_002374	NP_002365
EPHA4	2043	broad.mit.edu	37	2	222347021	222347021	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:222347021C>A	uc002vmq.2	-						EPHA4_uc002vmr.2_Intron|EPHA4_uc010zlm.1_Intron|EPHA4_uc010zln.1_Intron	NM_004438	NP_004429
COL6A3	1293	broad.mit.edu	37	2	238287761	238287761	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr2:238287761C>A	uc002vwl.2	-	6	2300	c.2015G>T	c.(2014-2016)GGA>GTA	p.G672V	COL6A3_uc002vwo.2_Missense_Mutation_p.G466V|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.G466V|COL6A3_uc002vwr.2_Missense_Mutation_p.G265V|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360
THAP4	51078	broad.mit.edu	37	2	242559636	242559636	+	Intron	SNP	T	G	G			2012-693:2012-1306-T	g.chr2:242559636T>G	uc002wbt.2	-						THAP4_uc002wbs.2_5'Flank	NM_015963	NP_057047
ARFGEF2	10564	broad.mit.edu	37	20	47611046	47611046	+	Missense_Mutation	SNP	C	A	A	rs138319848		2012-693:2012-1306-T	g.chr20:47611046C>A	uc002xtx.3	+	22	3184	c.3032C>A	c.(3031-3033)ACG>AAG	p.T1011K	ARFGEF2_uc010zyf.1_Missense_Mutation_p.T304K	NM_006420	NP_006411
MYT1	4661	broad.mit.edu	37	20	62866369	62866369	+	Intron	SNP	C	G	G			2012-693:2012-1306-T	g.chr20:62866369C>G	uc002yii.2	+						MYT1_uc002yij.2_Intron	NM_004535	NP_004526
TPTE	7179	broad.mit.edu	37	21	10996134	10996134	+	RNA	SNP	C	A	A			2012-693:2012-1306-T	g.chr21:10996134C>A	uc002yis.1	-	12		c.2052G>T					
PRDM15	63977	broad.mit.edu	37	21	43226217	43226217	+	Intron	SNP	C	T	T			2012-693:2012-1306-T	g.chr21:43226217C>T	uc002yzq.1	-						PRDM15_uc002yzo.2_Intron|PRDM15_uc002yzp.2_Intron|PRDM15_uc002yzr.1_Intron	NM_022115	NP_071398
MPPED1	758	broad.mit.edu	37	22	43892128	43892128	+	Intron	SNP	A	T	T			2012-693:2012-1306-T	g.chr22:43892128A>T	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
CNTN6	27255	broad.mit.edu	37	3	1337363	1337363	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr3:1337363C>A	uc003boz.2	+	6	800	c.533C>A	c.(532-534)ACG>AAG	p.T178K	CNTN6_uc010hbo.2_Missense_Mutation_p.T173K|CNTN6_uc011asj.1_Missense_Mutation_p.T106K|CNTN6_uc003bpa.2_Missense_Mutation_p.T178K	NM_014461	NP_055276
RAF1	5894	broad.mit.edu	37	3	12626582	12626582	+	Intron	SNP	T	C	C			2012-693:2012-1306-T	g.chr3:12626582T>C	uc003bxf.3	-						RAF1_uc011aut.1_Intron|RAF1_uc011auu.1_Intron	NM_002880	NP_002871
TGFBR2	7048	broad.mit.edu	37	3	30656168	30656168	+	Intron	SNP	G	A	A	rs6791557	by1000genomes	2012-693:2012-1306-T	g.chr3:30656168G>A	uc003ceo.2	+						TGFBR2_uc003cen.2_Intron	NM_003242	NP_003233
CELSR3	1951	broad.mit.edu	37	3	48696794	48696794	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr3:48696794C>A	uc003cul.2	-	1	3555	c.3274G>T	c.(3274-3276)GTG>TTG	p.V1092L	CELSR3_uc003cuf.1_Missense_Mutation_p.V1162L	NM_001407	NP_001398
PBRM1	55193	broad.mit.edu	37	3	52643860	52643860	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr3:52643860C>A	uc003des.2	-	16	2048	c.2036G>T	c.(2035-2037)CGC>CTC	p.R679L	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.R679L|PBRM1_uc003der.2_Missense_Mutation_p.R647L|PBRM1_uc003det.2_Missense_Mutation_p.R694L|PBRM1_uc003deu.2_Missense_Mutation_p.R694L|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.R679L|PBRM1_uc010hmk.1_Missense_Mutation_p.R679L|PBRM1_uc003dey.2_Missense_Mutation_p.R679L|PBRM1_uc003dez.1_Missense_Mutation_p.R679L|PBRM1_uc003dfb.1_Missense_Mutation_p.R592L|PBRM1_uc003dfa.1_Missense_Mutation_p.R25L|PBRM1_uc003dfc.2_Missense_Mutation_p.R46L	NM_181042	NP_060635
FOXP1	27086	broad.mit.edu	37	3	71090445	71090445	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr3:71090445C>A	uc003dol.2	-						FOXP1_uc003dom.2_Intron|FOXP1_uc003don.2_Intron|FOXP1_uc003doo.2_Intron|FOXP1_uc003dop.2_Intron|FOXP1_uc003doq.1_Intron|FOXP1_uc003doi.2_Intron|FOXP1_uc003doj.2_Intron|FOXP1_uc003dok.2_Intron|FOXP1_uc003dor.1_Intron	NM_032682	NP_116071
POLQ	10721	broad.mit.edu	37	3	121195503	121195503	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr3:121195503C>A	uc003eee.3	-	20	6418	c.6289G>T	c.(6289-6291)GCA>TCA	p.A2097S	POLQ_uc003eed.2_Missense_Mutation_p.A1269S	NM_199420	NP_955452
POLQ	10721	broad.mit.edu	37	3	121206722	121206722	+	Nonsense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr3:121206722C>A	uc003eee.3	-	16	5185	c.5056G>T	c.(5056-5058)GAG>TAG	p.E1686*	POLQ_uc003eed.2_Nonsense_Mutation_p.E858*	NM_199420	NP_955452
CHCHD6	84303	broad.mit.edu	37	3	126581148	126581148	+	Intron	SNP	T	C	C			2012-693:2012-1306-T	g.chr3:126581148T>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
CHCHD6	84303	broad.mit.edu	37	3	126581238	126581238	+	Intron	SNP	T	C	C			2012-693:2012-1306-T	g.chr3:126581238T>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
CHCHD6	84303	broad.mit.edu	37	3	126582025	126582025	+	Intron	SNP	C	T	T			2012-693:2012-1306-T	g.chr3:126582025C>T	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
PIK3CB	5291	broad.mit.edu	37	3	138474657	138474657	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr3:138474657C>A	uc011bmq.1	-	2	336	c.336G>T	c.(334-336)GTG>GTT	p.V112V		NM_006219	NP_006210
KDR	3791	broad.mit.edu	37	4	55948167	55948167	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr4:55948167C>A	uc003has.2	-	29	4106	c.3804G>T	c.(3802-3804)GAG>GAT	p.E1268D	KDR_uc003hat.1_Missense_Mutation_p.E1268D	NM_002253	NP_002244
KDR	3791	broad.mit.edu	37	4	55963886	55963886	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr4:55963886C>A	uc003has.2	-	18	2859	c.2557G>T	c.(2557-2559)GCC>TCC	p.A853S	KDR_uc003hat.1_Missense_Mutation_p.A853S	NM_002253	NP_002244
FAT4	79633	broad.mit.edu	37	4	126411114	126411114	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr4:126411114C>A	uc003ifj.3	+	17	13137	c.13137C>A	c.(13135-13137)AGC>AGA	p.S4379R	FAT4_uc011cgp.1_Missense_Mutation_p.S2620R|FAT4_uc003ifi.1_Missense_Mutation_p.S1856R	NM_024582	NP_078858
SORBS2	8470	broad.mit.edu	37	4	186702736	186702736	+	Intron	SNP	G	T	T			2012-693:2012-1306-T	g.chr4:186702736G>T	uc003iyl.2	-						SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Intron|SORBS2_uc011cky.1_Intron|SORBS2_uc003iyp.2_Intron	NM_021069	NP_066547
AHRR	57491	broad.mit.edu	37	5	345527	345527	+	Intron	SNP	C	G	G			2012-693:2012-1306-T	g.chr5:345527C>G	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
DNAH5	1767	broad.mit.edu	37	5	13735344	13735344	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:13735344C>A	uc003jfd.2	-	68	11699	c.11657G>T	c.(11656-11658)GGG>GTG	p.G3886V	DNAH5_uc003jfc.2_Missense_Mutation_p.G54V	NM_001369	NP_001360
CDH12	1010	broad.mit.edu	37	5	22078699	22078699	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:22078699C>A	uc010iuc.2	-	2	545	c.87G>T	c.(85-87)CAG>CAT	p.Q29H	CDH12_uc011cno.1_Missense_Mutation_p.Q29H|CDH12_uc003jgk.2_Missense_Mutation_p.Q29H	NM_004061	NP_004052
CDH10	1008	broad.mit.edu	37	5	24511472	24511472	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:24511472C>A	uc003jgr.1	-	6	1298	c.966G>T	c.(964-966)GAG>GAT	p.E322D	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718
CDH9	1007	broad.mit.edu	37	5	26902718	26902718	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:26902718C>A	uc003jgs.1	-	7	1289	c.1120G>T	c.(1120-1122)GTG>TTG	p.V374L		NM_016279	NP_057363
CDH9	1007	broad.mit.edu	37	5	26903754	26903754	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:26903754C>A	uc003jgs.1	-	6	1160	c.991G>T	c.(991-993)GTC>TTC	p.V331F	CDH9_uc010iug.2_Missense_Mutation_p.V331F	NM_016279	NP_057363
CDH9	1007	broad.mit.edu	37	5	26906918	26906918	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:26906918C>A	uc003jgs.1	-	4	722	c.553G>T	c.(553-555)GAT>TAT	p.D185Y	CDH9_uc010iug.2_Missense_Mutation_p.D185Y	NM_016279	NP_057363
ADAMTS12	81792	broad.mit.edu	37	5	33751608	33751608	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:33751608C>A	uc003jia.1	-	3	698	c.535G>T	c.(535-537)GTG>TTG	p.V179L	ADAMTS12_uc010iuq.1_Missense_Mutation_p.V179L|ADAMTS12_uc003jib.1_Missense_Mutation_p.V179L	NM_030955	NP_112217
MAP3K1	4214	broad.mit.edu	37	5	56174801	56174801	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:56174801C>A	uc003jqw.3	+							NM_005921	NP_005912
APC	324	broad.mit.edu	37	5	112177569	112177569	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:112177569C>A	uc010jby.2	+	16	6658	c.6278C>A	c.(6277-6279)TCC>TAC	p.S2093Y	APC_uc011cvt.1_Missense_Mutation_p.S2075Y|APC_uc003kpz.3_Missense_Mutation_p.S2093Y|APC_uc003kpy.3_Missense_Mutation_p.S2093Y|APC_uc010jbz.2_Missense_Mutation_p.S1810Y|APC_uc010jca.2_Missense_Mutation_p.S1393Y	NM_001127511	NP_001120983
PCDHA8	56140	broad.mit.edu	37	5	140221306	140221306	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:140221306C>A	uc003lhs.2	+	1	400	c.400C>A	c.(400-402)CGG>AGG	p.R134R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.R134R	NM_018911	NP_061734
PCDHB2	56133	broad.mit.edu	37	5	140475358	140475358	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:140475358C>A	uc003lil.2	+	1	1122	c.984C>A	c.(982-984)GGC>GGA	p.G328G	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759
CSF1R	1436	broad.mit.edu	37	5	149435731	149435731	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:149435731C>A	uc003lrl.2	-						CSF1R_uc011dcd.1_Intron|CSF1R_uc010jhc.2_Intron|CSF1R_uc003lrm.2_Intron	NM_005211	NP_005202
FAT2	2196	broad.mit.edu	37	5	150946107	150946107	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr5:150946107C>A	uc003lue.3	-	1	2399	c.2386G>T	c.(2386-2388)GGC>TGC	p.G796C	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.G796C	NM_001447	NP_001438
GM2A	2760	broad.mit.edu	37	5	150992336	150992336	+	Intron	SNP	G	T	T			2012-693:2012-1306-T	g.chr5:150992336G>T	uc011dcs.1	+							NM_000405	
ITK	3702	broad.mit.edu	37	5	156667130	156667130	+	Missense_Mutation	SNP	C	G	G			2012-693:2012-1306-T	g.chr5:156667130C>G	uc003lwo.1	+	10	992	c.910C>G	c.(910-912)CGA>GGA	p.R304G		NM_005546	NP_005537
HLA-G	3135	broad.mit.edu	37	6	29857730	29857730	+	Intron	SNP	G	C	C	rs112551412		2012-693:2012-1306-T	g.chr6:29857730G>C	uc011dmb.1	+						HLA-H_uc003nod.2_Intron	NM_002127	NP_002118
PKHD1	5314	broad.mit.edu	37	6	51889809	51889809	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr6:51889809C>A	uc003pah.1	-	32	5075	c.4799G>T	c.(4798-4800)GGA>GTA	p.G1600V	PKHD1_uc003pai.2_Missense_Mutation_p.G1600V	NM_138694	NP_619639
DST	667	broad.mit.edu	37	6	56325024	56325024	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr6:56325024C>A	uc003pdf.2	-	96	16698	c.16670G>T	c.(16669-16671)CGA>CTA	p.R5557L	DST_uc003pcz.3_Missense_Mutation_p.R5379L|DST_uc011dxj.1_Missense_Mutation_p.R5408L|DST_uc011dxk.1_Missense_Mutation_p.R5419L|DST_uc003pcy.3_Missense_Mutation_p.R5053L|DST_uc003pcv.3_Missense_Mutation_p.R175L|DST_uc003pcw.3_Missense_Mutation_p.R136L|DST_uc003pcx.3_Missense_Mutation_p.R99L	NM_001144769	NP_001138241
DST	667	broad.mit.edu	37	6	56483335	56483335	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr6:56483335C>A	uc003pdf.2	-						DST_uc003pcz.3_Intron|DST_uc011dxj.1_Intron|DST_uc011dxk.1_Intron|DST_uc003pcy.3_Intron|DST_uc003pdb.2_Intron|DST_uc003pdc.3_Missense_Mutation_p.D1833Y	NM_001144769	NP_001138241
DST	667	broad.mit.edu	37	6	56485163	56485163	+	Intron	SNP	C	A	A			2012-693:2012-1306-T	g.chr6:56485163C>A	uc003pdf.2	-						DST_uc003pcz.3_Intron|DST_uc011dxj.1_Intron|DST_uc011dxk.1_Intron|DST_uc003pcy.3_Intron|DST_uc003pdb.2_Intron|DST_uc003pdc.3_Missense_Mutation_p.E1223D	NM_001144769	NP_001138241
EPHA7	2045	broad.mit.edu	37	6	94066629	94066629	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr6:94066629C>A	uc003poe.2	-	5	1371	c.1130G>T	c.(1129-1131)GGC>GTC	p.G377V	EPHA7_uc003pof.2_Missense_Mutation_p.G377V|EPHA7_uc011eac.1_Missense_Mutation_p.G377V	NM_004440	NP_004431
ROS1	6098	broad.mit.edu	37	6	117717374	117717374	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr6:117717374C>A	uc003pxp.1	-	8	1032	c.833G>T	c.(832-834)AGT>ATT	p.S278I	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
SYNE1	23345	broad.mit.edu	37	6	152639296	152639296	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr6:152639296C>A	uc010kiw.2	-	86	17094	c.16492G>T	c.(16492-16494)GCC>TCC	p.A5498S	SYNE1_uc010kiv.2_Missense_Mutation_p.A22S|SYNE1_uc003qos.3_Missense_Mutation_p.A22S|SYNE1_uc003qot.3_Missense_Mutation_p.A5427S|SYNE1_uc003qou.3_Missense_Mutation_p.A5498S|SYNE1_uc010kiz.2_Missense_Mutation_p.A1253S	NM_182961	NP_892006
EIF2AK1	27102	broad.mit.edu	37	7	6098972	6098972	+	5'Flank	SNP	T	G	G			2012-693:2012-1306-T	g.chr7:6098972T>G	uc003spp.2	-						EIF2AK1_uc003spq.2_5'Flank|EIF2AK1_uc011jwm.1_5'Flank	NM_014413	NP_055228
BBS9	27241	broad.mit.edu	37	7	33376127	33376127	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:33376127C>A	uc003tdn.1	+	10	1604	c.1091C>A	c.(1090-1092)TCT>TAT	p.S364Y	BBS9_uc003tdo.1_Missense_Mutation_p.S364Y|BBS9_uc003tdp.1_Missense_Mutation_p.S364Y|BBS9_uc003tdq.1_Missense_Mutation_p.S364Y|BBS9_uc010kwn.1_RNA|BBS9_uc011kao.1_Missense_Mutation_p.S242Y	NM_198428	NP_940820
PKD1L1	168507	broad.mit.edu	37	7	47906091	47906091	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:47906091C>A	uc003tny.1	-	25	4018	c.4018G>T	c.(4018-4020)GCC>TCC	p.A1340S		NM_138295	NP_612152
PCLO	27445	broad.mit.edu	37	7	82538241	82538241	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:82538241C>A	uc003uhx.2	-	8	13678	c.13389G>T	c.(13387-13389)CTG>CTT	p.L4463L	PCLO_uc003uhv.2_Silent_p.L4463L	NM_033026	NP_149015
PCLO	27445	broad.mit.edu	37	7	82544702	82544702	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:82544702C>A	uc003uhx.2	-	7	12889	c.12600G>T	c.(12598-12600)ATG>ATT	p.M4200I	PCLO_uc003uhv.2_Missense_Mutation_p.M4200I|PCLO_uc010lec.2_Missense_Mutation_p.M1165I	NM_033026	NP_149015
RELN	5649	broad.mit.edu	37	7	103234267	103234267	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:103234267C>A	uc003vca.2	-	27	3934	c.3774G>T	c.(3772-3774)TTG>TTT	p.L1258F	RELN_uc010liz.2_Missense_Mutation_p.L1258F	NM_005045	NP_005036
SLC26A3	1811	broad.mit.edu	37	7	107434897	107434897	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:107434897C>A	uc003ver.2	-	2	269	c.58G>T	c.(58-60)GCT>TCT	p.A20S	SLC26A3_uc003ves.2_Missense_Mutation_p.M1I	NM_000111	NP_000102
SMO	6608	broad.mit.edu	37	7	128849168	128849168	+	Missense_Mutation	SNP	A	C	C			2012-693:2012-1306-T	g.chr7:128849168A>C	uc003vor.2	+	8	1676	c.1396A>C	c.(1396-1398)ACC>CCC	p.T466P	SMO_uc003vos.2_Missense_Mutation_p.T141P	NM_005631	NP_005622
KIAA1549	57670	broad.mit.edu	37	7	138602281	138602281	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:138602281C>A	uc011kql.1	-	2	2140	c.2091G>T	c.(2089-2091)CAG>CAT	p.Q697H	KIAA1549_uc003vuk.3_Missense_Mutation_p.Q647H|KIAA1549_uc011kqj.1_Missense_Mutation_p.Q697H	NM_020910	NP_065961
EZH2	2146	broad.mit.edu	37	7	148525883	148525883	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:148525883C>A	uc003wfd.1	-	6	740	c.574G>T	c.(574-576)GAT>TAT	p.D192Y	EZH2_uc011kug.1_Missense_Mutation_p.D183Y|EZH2_uc003wfb.1_Missense_Mutation_p.D192Y|EZH2_uc003wfc.1_Missense_Mutation_p.D153Y|EZH2_uc011kuh.1_Missense_Mutation_p.D183Y|EZH2_uc011kui.1_Missense_Mutation_p.D192Y|EZH2_uc011kuj.1_RNA	NM_004456	NP_004447
MLL3	58508	broad.mit.edu	37	7	151873972	151873972	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:151873972C>A	uc003wla.2	-	38	8785	c.8566G>T	c.(8566-8568)GCT>TCT	p.A2856S	MLL3_uc003wkz.2_Missense_Mutation_p.A1917S|MLL3_uc003wky.2_Missense_Mutation_p.A365S	NM_170606	NP_733751
MLL3	58508	broad.mit.edu	37	7	151879515	151879515	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:151879515C>A	uc003wla.2	-	36	5649	c.5430G>T	c.(5428-5430)TTG>TTT	p.L1810F	MLL3_uc003wkz.2_Missense_Mutation_p.L871F	NM_170606	NP_733751
MLL3	58508	broad.mit.edu	37	7	151902305	151902305	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr7:151902305C>A	uc003wla.2	-	25	4066	c.3847G>T	c.(3847-3849)GGT>TGT	p.G1283C	MLL3_uc003wkz.2_Missense_Mutation_p.G344C	NM_170606	NP_733751
PTPRN2	5799	broad.mit.edu	37	7	157851644	157851644	+	Intron	SNP	G	A	A			2012-693:2012-1306-T	g.chr7:157851644G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TEX15	56154	broad.mit.edu	37	8	30705991	30705991	+	Silent	SNP	G	A	A			2012-693:2012-1306-T	g.chr8:30705991G>A	uc003xil.2	-	1	543	c.543C>T	c.(541-543)GCC>GCT	p.A181A		NM_031271	NP_112561
FGFR1	2260	broad.mit.edu	37	8	38315043	38315043	+	5'UTR	SNP	C	G	G			2012-693:2012-1306-T	g.chr8:38315043C>G	uc003xlp.2	-	2					FGFR1_uc011lbo.1_5'UTR|FGFR1_uc011lbp.1_5'UTR|FGFR1_uc011lbq.1_5'UTR|FGFR1_uc010lwk.2_5'UTR|FGFR1_uc011lbs.1_5'UTR|FGFR1_uc011lbt.1_5'UTR|FGFR1_uc011lbu.1_Missense_Mutation_p.L7F|FGFR1_uc011lbv.1_5'UTR|FGFR1_uc011lbw.1_5'UTR|FGFR1_uc011lbx.1_5'UTR|FGFR1_uc003xlv.2_5'UTR|FGFR1_uc003xlu.2_5'UTR|FGFR1_uc003xlw.1_RNA	NM_023110	NP_075598
RB1CC1	9821	broad.mit.edu	37	8	53573718	53573718	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr8:53573718C>A	uc003xre.3	-	10	2040	c.1482G>T	c.(1480-1482)CAG>CAT	p.Q494H	RB1CC1_uc003xrf.3_Missense_Mutation_p.Q494H	NM_014781	NP_055596
PLAG1	5324	broad.mit.edu	37	8	57079157	57079157	+	Missense_Mutation	SNP	C	A	A			2012-693:2012-1306-T	g.chr8:57079157C>A	uc003xsq.3	-	3	1599	c.1148G>T	c.(1147-1149)GGG>GTG	p.G383V	PLAG1_uc003xsr.3_Missense_Mutation_p.G383V|PLAG1_uc010lyi.2_Missense_Mutation_p.G383V|PLAG1_uc010lyj.2_Missense_Mutation_p.G301V	NM_001114635	NP_001108107
SLCO5A1	81796	broad.mit.edu	37	8	70747246	70747246	+	5'UTR	SNP	A	C	C			2012-693:2012-1306-T	g.chr8:70747246A>C	uc003xyl.2	-	1					SLCO5A1_uc010lzb.2_5'Flank|SLCO5A1_uc011lfa.1_5'Flank|SLCO5A1_uc003xyk.2_5'Flank|SLCO5A1_uc010lzc.2_5'Flank	NM_030958	NP_112220
ZFHX4	79776	broad.mit.edu	37	8	77766407	77766407	+	Missense_Mutation	SNP	A	C	C			2012-693:2012-1306-T	g.chr8:77766407A>C	uc003yav.2	+	10	7502	c.7115A>C	c.(7114-7116)GAC>GCC	p.D2372A	ZFHX4_uc003yau.1_Missense_Mutation_p.D2417A|ZFHX4_uc003yaw.1_Missense_Mutation_p.D2372A	NM_024721	NP_078997
PKHD1L1	93035	broad.mit.edu	37	8	110530670	110530670	+	Silent	SNP	C	A	A			2012-693:2012-1306-T	g.chr8:110530670C>A	uc003yne.2	+	73	12068	c.11964C>A	c.(11962-11964)TCC>TCA	p.S3988S		NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113243803	113243803	+	Missense_Mutation	SNP	T	A	A			2012-693:2012-1306-T	g.chr8:113243803T>A	uc003ynu.2	-	69	10958	c.10799A>T	c.(10798-10800)GAT>GTT	p.D3600V	CSMD3_uc003yns.2_Missense_Mutation_p.D2802V|CSMD3_uc003ynt.2_Missense_Mutation_p.D3560V|CSMD3_uc011lhx.1_Missense_Mutation_p.D3431V	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113348876	113348876	+	Intron	SNP	C	T	T			2012-693:2012-1306-T	g.chr8:113348876C>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc003ynw.1_Intron	NM_198123	NP_937756
PBX3	5090	broad.mit.edu	37	9	128729497	128729497	+	3'UTR	SNP	C	A	A			2012-693:2012-1306-T	g.chr9:128729497C>A	uc004bqb.2	+	9					PBX3_uc004bqc.2_3'UTR|PBX3_uc004bqd.2_3'UTR|PBX3_uc011lzw.1_3'UTR|PBX3_uc011lzx.1_3'UTR|PBX3_uc004bqe.2_3'UTR	NM_006195	NP_006186
LCN6	158062	broad.mit.edu	37	9	139642600	139642600	+	Intron	SNP	A	C	C			2012-693:2012-1306-T	g.chr9:139642600A>C	uc004ciy.2	-						LCN10_uc004ciw.2_Intron|uc004ciz.1_RNA	NM_198946	NP_945184
SCNN1D	6339	broad.mit.edu	37	1	1224878	1224878	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr1:1224878T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1224919	1224919	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr1:1224919T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRDM16	63976	broad.mit.edu	37	1	3296460	3296460	+	Intron	SNP	C	A	A			2012-695:2012-1303-T	g.chr1:3296460C>A	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
HIVEP3	59269	broad.mit.edu	37	1	42010494	42010494	+	Intron	SNP	C	T	T			2012-695:2012-1303-T	g.chr1:42010494C>T	uc001cgz.3	-						HIVEP3_uc001cha.3_Intron|HIVEP3_uc001cgy.2_Intron	NM_024503	NP_078779
SPAG17	200162	broad.mit.edu	37	1	118635930	118635930	+	Missense_Mutation	SNP	C	A	A			2012-695:2012-1303-T	g.chr1:118635930C>A	uc001ehk.2	-	8	1090	c.1022G>T	c.(1021-1023)GGC>GTC	p.G341V		NM_206996	NP_996879
LOC200030	200030	broad.mit.edu	37	1	148011069	148011069	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr1:148011069G>A	uc001eqf.2	-						LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Intron|NBPF14_uc001eqq.2_Intron|NBPF14_uc010pad.1_Intron|NBPF14_uc001eqs.1_Intron	NM_017940	NP_060410
OR2L2	26246	broad.mit.edu	37	1	248201959	248201959	+	Silent	SNP	C	T	T			2012-695:2012-1303-T	g.chr1:248201959C>T	uc001idw.2	+	1	486	c.390C>T	c.(388-390)CAC>CAT	p.H130H	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686
PCDH15	65217	broad.mit.edu	37	10	55566562	55566562	+	Missense_Mutation	SNP	C	A	A			2012-695:2012-1303-T	g.chr10:55566562C>A	uc010qhq.1	-	36	5221	c.4826G>T	c.(4825-4827)AGA>ATA	p.R1609I	PCDH15_uc010qhr.1_Missense_Mutation_p.R1604I	NM_001142771	NP_001136243
DOCK1	1793	broad.mit.edu	37	10	128799226	128799226	+	Intron	SNP	C	G	G			2012-695:2012-1303-T	g.chr10:128799226C>G	uc001ljt.2	+						DOCK1_uc010qun.1_Intron	NM_001380	NP_001371
LRRC27	80313	broad.mit.edu	37	10	134172247	134172247	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr10:134172247G>A	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
BRSK2	9024	broad.mit.edu	37	11	1415852	1415852	+	Intron	SNP	G	C	C			2012-695:2012-1303-T	g.chr11:1415852G>C	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
B4GALNT3	283358	broad.mit.edu	37	12	653017	653017	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr12:653017G>A	uc001qii.1	+						B4GALNT3_uc001qij.1_Intron	NM_173593	NP_775864
PTPN6	5777	broad.mit.edu	37	12	7055521	7055521	+	5'Flank	SNP	A	C	C			2012-695:2012-1303-T	g.chr12:7055521A>C	uc001qsa.1	+						PTPN6_uc010sfr.1_5'Flank	NM_080548	NP_536858
ABCD2	225	broad.mit.edu	37	12	39973367	39973367	+	Missense_Mutation	SNP	C	G	G			2012-695:2012-1303-T	g.chr12:39973367C>G	uc001rmb.2	-	8	2273	c.1847G>C	c.(1846-1848)AGA>ACA	p.R616T		NM_005164	NP_005155
GLI1	2735	broad.mit.edu	37	12	57853486	57853486	+	5'Flank	SNP	T	G	G			2012-695:2012-1303-T	g.chr12:57853486T>G	uc001snx.2	+						GLI1_uc009zpp.2_5'Flank|GLI1_uc009zpq.2_5'Flank|GLI1_uc009zpr.1_5'Flank	NM_005269	NP_005260
NAV3	89795	broad.mit.edu	37	12	78513434	78513434	+	Missense_Mutation	SNP	G	T	T			2012-695:2012-1303-T	g.chr12:78513434G>T	uc001syp.2	+	15	3631	c.3458G>T	c.(3457-3459)GGA>GTA	p.G1153V	NAV3_uc001syo.2_Missense_Mutation_p.G1153V|NAV3_uc010sub.1_Missense_Mutation_p.G653V|NAV3_uc009zsf.2_Missense_Mutation_p.G161V	NM_014903	NP_055718
F7	2155	broad.mit.edu	37	13	113763202	113763202	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr13:113763202G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113763236	113763236	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr13:113763236G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
TSC2	7249	broad.mit.edu	37	16	2105339	2105339	+	Intron	SNP	A	G	G			2012-695:2012-1303-T	g.chr16:2105339A>G	uc002con.2	+						TSC2_uc010bsd.2_Intron|TSC2_uc002coo.2_Intron|TSC2_uc010uvv.1_Intron|TSC2_uc010uvw.1_Intron|TSC2_uc002cop.2_Intron	NM_000548	NP_000539
TSC2	7249	broad.mit.edu	37	16	2105345	2105345	+	Intron	SNP	A	G	G			2012-695:2012-1303-T	g.chr16:2105345A>G	uc002con.2	+						TSC2_uc010bsd.2_Intron|TSC2_uc002coo.2_Intron|TSC2_uc010uvv.1_Intron|TSC2_uc010uvw.1_Intron|TSC2_uc002cop.2_Intron	NM_000548	NP_000539
TSC2	7249	broad.mit.edu	37	16	2105348	2105348	+	Intron	SNP	T	G	G			2012-695:2012-1303-T	g.chr16:2105348T>G	uc002con.2	+						TSC2_uc010bsd.2_Intron|TSC2_uc002coo.2_Intron|TSC2_uc010uvv.1_Intron|TSC2_uc010uvw.1_Intron|TSC2_uc002cop.2_Intron	NM_000548	NP_000539
ABAT	18	broad.mit.edu	37	16	8866569	8866569	+	Intron	SNP	G	T	T			2012-695:2012-1303-T	g.chr16:8866569G>T	uc002czc.3	+						ABAT_uc002czd.3_Intron|ABAT_uc010buh.2_Intron|ABAT_uc010bui.2_Intron	NM_020686	NP_065737
HYDIN	54768	broad.mit.edu	37	16	70928259	70928259	+	Intron	SNP	C	G	G	rs75758074		2012-695:2012-1303-T	g.chr16:70928259C>G	uc002ezr.2	-							NM_032821	NP_116210
ABR	29	broad.mit.edu	37	17	1056898	1056898	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr17:1056898G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
TP53	7157	broad.mit.edu	37	17	7578272	7578272	+	Missense_Mutation	SNP	G	C	C			2012-695:2012-1303-T	g.chr17:7578272G>C	uc002gim.2	-	6	771	c.577C>G	c.(577-579)CAT>GAT	p.H193D	TP53_uc002gig.1_Missense_Mutation_p.H193D|TP53_uc002gih.2_Missense_Mutation_p.H193D|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.H61D|TP53_uc010cng.1_Missense_Mutation_p.H61D|TP53_uc002gii.1_Missense_Mutation_p.H61D|TP53_uc010cnh.1_Missense_Mutation_p.H193D|TP53_uc010cni.1_Missense_Mutation_p.H193D|TP53_uc002gij.2_Missense_Mutation_p.H193D|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.H100D|TP53_uc002gio.2_Missense_Mutation_p.H61D|TP53_uc010vug.1_Missense_Mutation_p.H154D	NM_001126112	NP_001119584
MYH8	4626	broad.mit.edu	37	17	10300033	10300033	+	Silent	SNP	G	C	C			2012-695:2012-1303-T	g.chr17:10300033G>C	uc002gmm.2	-	32	4460	c.4365C>G	c.(4363-4365)GTC>GTG	p.V1455V	uc002gml.1_Intron	NM_002472	NP_002463
MYH2	4620	broad.mit.edu	37	17	10433292	10433292	+	Missense_Mutation	SNP	C	T	T			2012-695:2012-1303-T	g.chr17:10433292C>T	uc010coi.2	-	23	2925	c.2797G>A	c.(2797-2799)GAG>AAG	p.E933K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E933K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582
PRCD	768206	broad.mit.edu	37	17	74523022	74523022	+	5'Flank	SNP	G	C	C			2012-695:2012-1303-T	g.chr17:74523022G>C	uc002jrw.1	+								
RPTOR	57521	broad.mit.edu	37	17	78904347	78904347	+	Intron	SNP	A	C	C			2012-695:2012-1303-T	g.chr17:78904347A>C	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
NLRP4	147945	broad.mit.edu	37	19	56362077	56362077	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr19:56362077G>A	uc002qmd.3	+							NM_134444	NP_604393
MYT1L	23040	broad.mit.edu	37	2	2240339	2240339	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr2:2240339T>C	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
RMND5A	64795	broad.mit.edu	37	2	87623376	87623376	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr2:87623376G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643318	87643318	+	Intron	SNP	A	G	G			2012-695:2012-1303-T	g.chr2:87643318A>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87646001	87646001	+	Intron	SNP	A	T	T			2012-695:2012-1303-T	g.chr2:87646001A>T	uc002srs.3	+								
INPP4A	3631	broad.mit.edu	37	2	99162485	99162485	+	Missense_Mutation	SNP	C	G	G			2012-695:2012-1303-T	g.chr2:99162485C>G	uc002syy.2	+	12	1396	c.1003C>G	c.(1003-1005)CCC>GCC	p.P335A	INPP4A_uc010yvj.1_Missense_Mutation_p.P335A|INPP4A_uc010yvk.1_Missense_Mutation_p.P335A|INPP4A_uc002syx.2_Missense_Mutation_p.P335A|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696
FBLN7	129804	broad.mit.edu	37	2	112896946	112896946	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr2:112896946T>C	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
TTN	7273	broad.mit.edu	37	2	179435820	179435820	+	Silent	SNP	T	C	C			2012-695:2012-1303-T	g.chr2:179435820T>C	uc010zfg.1	-	275	67559	c.67335A>G	c.(67333-67335)CCA>CCG	p.P22445P	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.P16140P|TTN_uc010zfi.1_Silent_p.P16073P|TTN_uc010zfj.1_Silent_p.P15948P	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179499780	179499780	+	Intron	SNP	A	G	G			2012-695:2012-1303-T	g.chr2:179499780A>G	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179583186	179583186	+	Missense_Mutation	SNP	C	T	T			2012-695:2012-1303-T	g.chr2:179583186C>T	uc010zfg.1	-	82	21139	c.20915G>A	c.(20914-20916)AGA>AAA	p.R6972K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R3633K	NM_133378	NP_596869
MAP2	4133	broad.mit.edu	37	2	210598703	210598703	+	3'UTR	SNP	C	T	T			2012-695:2012-1303-T	g.chr2:210598703C>T	uc002vde.1	+	15					MAP2_uc002vdd.1_3'UTR|MAP2_uc002vdf.1_3'UTR|MAP2_uc002vdg.1_3'UTR|MAP2_uc002vdh.1_3'UTR|MAP2_uc002vdi.1_3'UTR	NM_002374	NP_002365
MLPH	79083	broad.mit.edu	37	2	238453065	238453065	+	Intron	SNP	G	C	C			2012-695:2012-1303-T	g.chr2:238453065G>C	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
C20orf26	26074	broad.mit.edu	37	20	20336149	20336149	+	Intron	SNP	C	G	G			2012-695:2012-1303-T	g.chr20:20336149C>G	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20336421	20336421	+	Intron	SNP	G	C	C			2012-695:2012-1303-T	g.chr20:20336421G>C	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
FAM19A5	25817	broad.mit.edu	37	22	49062364	49062364	+	Intron	SNP	A	C	C			2012-695:2012-1303-T	g.chr22:49062364A>C	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
SRGAP3	9901	broad.mit.edu	37	3	9094673	9094673	+	Intron	SNP	G	T	T			2012-695:2012-1303-T	g.chr3:9094673G>T	uc003brf.1	-						SRGAP3_uc003brg.1_Intron|SRGAP3_uc003bri.1_Intron|SRGAP3_uc003brj.1_Intron	NM_014850	NP_055665
PIK3CB	5291	broad.mit.edu	37	3	138402510	138402510	+	Intron	SNP	C	T	T			2012-695:2012-1303-T	g.chr3:138402510C>T	uc011bmq.1	-						PIK3CB_uc011bmn.1_Intron|PIK3CB_uc011bmo.1_Intron|PIK3CB_uc011bmp.1_Intron	NM_006219	NP_006210
GMPS	8833	broad.mit.edu	37	3	155654141	155654141	+	Missense_Mutation	SNP	A	G	G			2012-695:2012-1303-T	g.chr3:155654141A>G	uc003faq.2	+	15	2157	c.1822A>G	c.(1822-1824)ATC>GTC	p.I608V	GMPS_uc011bom.1_Missense_Mutation_p.I509V	NM_003875	NP_003866
PCGF3	10336	broad.mit.edu	37	4	710314	710314	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr4:710314T>C	uc011bva.1	+						PCGF3_uc003gbc.1_Intron|PCGF3_uc003gbd.1_Intron|PCGF3_uc003gbe.2_Intron|PCGF3_uc010ibh.2_Intron	NM_006315	NP_006306
GRSF1	2926	broad.mit.edu	37	4	71705732	71705732	+	5'Flank	SNP	G	T	T			2012-695:2012-1303-T	g.chr4:71705732G>T	uc010iia.1	-						GRSF1_uc011caz.1_5'Flank|GRSF1_uc003hfs.2_5'Flank	NM_002092	NP_002083
FAT1	2195	broad.mit.edu	37	4	187530937	187530937	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr4:187530937T>C	uc003izf.2	-							NM_005245	NP_005236
ADAMTS12	81792	broad.mit.edu	37	5	33576200	33576200	+	Missense_Mutation	SNP	C	T	T	rs138603217		2012-695:2012-1303-T	g.chr5:33576200C>T	uc003jia.1	-	19	4094	c.3931G>A	c.(3931-3933)GGC>AGC	p.G1311S	ADAMTS12_uc010iuq.1_Missense_Mutation_p.G1226S	NM_030955	NP_112217
MSH3	4437	broad.mit.edu	37	5	80083378	80083378	+	Intron	SNP	C	T	T			2012-695:2012-1303-T	g.chr5:80083378C>T	uc003kgz.2	+							NM_002439	NP_002430
SLCO4C1	353189	broad.mit.edu	37	5	101627007	101627008	+	Intron	DNP	TC	AA	AA			2012-695:2012-1303-T	g.chr5:101627007_101627008TC>AA	uc003knm.2	-							NM_180991	NP_851322
TAP2	6891	broad.mit.edu	37	6	32803453	32803453	+	Missense_Mutation	SNP	G	T	T			2012-695:2012-1303-T	g.chr6:32803453G>T	uc003occ.2	-	3	737	c.706C>A	c.(706-708)CAG>AAG	p.Q236K	TAP2_uc011dqf.1_Missense_Mutation_p.Q236K|TAP2_uc003ocb.1_Missense_Mutation_p.Q236K|TAP2_uc003ocd.2_Missense_Mutation_p.Q236K	NM_018833	NP_061313
TAP1	6890	broad.mit.edu	37	6	32818628	32818628	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr6:32818628G>A	uc003ocg.2	-						TAP1_uc011dqi.1_Intron	NM_000593	NP_000584
DST	667	broad.mit.edu	37	6	56475314	56475314	+	Missense_Mutation	SNP	G	C	C			2012-695:2012-1303-T	g.chr6:56475314G>C	uc003pdf.2	-	38	5123	c.5095C>G	c.(5095-5097)CTT>GTT	p.L1699V	DST_uc003pcz.3_Missense_Mutation_p.L1521V|DST_uc011dxj.1_Missense_Mutation_p.L1550V|DST_uc011dxk.1_Missense_Mutation_p.L1561V|DST_uc003pcy.3_Missense_Mutation_p.L1195V|DST_uc003pdb.2_Missense_Mutation_p.L1195V	NM_001144769	NP_001138241
STX7	8417	broad.mit.edu	37	6	132812200	132812200	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr6:132812200T>C	uc003qdg.2	-						STX7_uc011ecg.1_Intron|STX7_uc011ech.1_Intron	NM_003569	NP_003560
SYNE1	23345	broad.mit.edu	37	6	152560836	152560836	+	Nonsense_Mutation	SNP	G	C	C			2012-695:2012-1303-T	g.chr6:152560836G>C	uc010kiw.2	-	108	20501	c.19899C>G	c.(19897-19899)TAC>TAG	p.Y6633*	SYNE1_uc010kiv.2_Nonsense_Mutation_p.Y1157*|SYNE1_uc003qos.3_Nonsense_Mutation_p.Y1157*|SYNE1_uc003qot.3_Nonsense_Mutation_p.Y6562*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Y6633*	NM_182961	NP_892006
EIF2AK1	27102	broad.mit.edu	37	7	6098972	6098972	+	5'Flank	SNP	T	G	G			2012-695:2012-1303-T	g.chr7:6098972T>G	uc003spp.2	-						EIF2AK1_uc003spq.2_5'Flank|EIF2AK1_uc011jwm.1_5'Flank	NM_014413	NP_055228
VPS41	27072	broad.mit.edu	37	7	38948836	38948836	+	5'Flank	SNP	G	T	T			2012-695:2012-1303-T	g.chr7:38948836G>T	uc003tgy.2	-						VPS41_uc003tgz.2_5'Flank|VPS41_uc010kxn.2_5'Flank	NM_014396	NP_055211
PKD1L1	168507	broad.mit.edu	37	7	47925503	47925503	+	Missense_Mutation	SNP	T	G	G			2012-695:2012-1303-T	g.chr7:47925503T>G	uc003tny.1	-	18	2986	c.2986A>C	c.(2986-2988)ACC>CCC	p.T996P		NM_138295	NP_612152
EGFR	1956	broad.mit.edu	37	7	55273149	55273149	+	Missense_Mutation	SNP	G	C	C	rs140028234		2012-695:2012-1303-T	g.chr7:55273149G>C	uc003tqk.2	+	28	3718	c.3472G>C	c.(3472-3474)GCC>CCC	p.A1158P	EGFR_uc011kco.1_Missense_Mutation_p.A1105P	NM_005228	NP_005219
CNTNAP2	26047	broad.mit.edu	37	7	147674928	147674928	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr7:147674928T>C	uc003weu.1	+							NM_014141	NP_054860
PKHD1L1	93035	broad.mit.edu	37	8	110401393	110401393	+	Intron	SNP	T	C	C			2012-695:2012-1303-T	g.chr8:110401393T>C	uc003yne.2	+							NM_177531	NP_803875
CSMD3	114788	broad.mit.edu	37	8	113326851	113326851	+	Intron	SNP	C	G	G			2012-695:2012-1303-T	g.chr8:113326851C>G	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron|CSMD3_uc003ynw.1_Intron	NM_198123	NP_937756
ZC3H3	23144	broad.mit.edu	37	8	144569339	144569339	+	Intron	SNP	G	A	A			2012-695:2012-1303-T	g.chr8:144569339G>A	uc003yyd.2	-							NM_015117	NP_055932
ADAMTSL1	92949	broad.mit.edu	37	9	18639427	18639427	+	Intron	SNP	A	C	C			2012-695:2012-1303-T	g.chr9:18639427A>C	uc003zne.3	+						ADAMTSL1_uc003znb.2_Intron|ADAMTSL1_uc003znc.3_Intron	NM_001040272	NP_001035362
NOTCH1	4851	broad.mit.edu	37	9	139413147	139413147	+	Missense_Mutation	SNP	C	T	T			2012-695:2012-1303-T	g.chr9:139413147C>T	uc004chz.2	-	6	995	c.995G>A	c.(994-996)TGC>TAC	p.C332Y		NM_017617	NP_060087
PLCXD1	55344	broad.mit.edu	37	X	197197	197197	+	5'Flank	SNP	G	A	A			2012-695:2012-1303-T	g.chrX:197197G>A	uc004cpc.2	+						PLCXD1_uc011mgx.1_Intron	NM_018390	NP_060860
CLCN4	1183	broad.mit.edu	37	X	10163169	10163169	+	Intron	SNP	A	C	C			2012-695:2012-1303-T	g.chrX:10163169A>C	uc004csy.3	+						CLCN4_uc011mid.1_Intron	NM_001830	NP_001821
FANCB	2187	broad.mit.edu	37	X	14887147	14887147	+	5'UTR	SNP	C	G	G	rs2188383	by1000genomes	2012-695:2012-1303-T	g.chrX:14887147C>G	uc004cwg.1	-	2					FANCB_uc004cwh.1_Intron	NM_001018113	NP_001018123
PIR	8544	broad.mit.edu	37	X	15451926	15451926	+	Intron	SNP	A	C	C			2012-695:2012-1303-T	g.chrX:15451926A>C	uc004cwu.2	-						PIR_uc004cwv.2_Intron	NM_003662	NP_003653
SPTA1	6708	broad.mit.edu	37	1	158647669	158647669	+	Intron	SNP	T	C	C	rs703122	by1000genomes	2012-696:2012-1305-T	g.chr1:158647669T>C	uc001fst.1	-							NM_003126	NP_003117
LGR6	59352	broad.mit.edu	37	1	202173384	202173384	+	Intron	SNP	A	C	C			2012-696:2012-1305-T	g.chr1:202173384A>C	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
PTPRE	5791	broad.mit.edu	37	10	129738095	129738095	+	Intron	SNP	T	G	G			2012-696:2012-1305-T	g.chr10:129738095T>G	uc001lkb.2	+						PTPRE_uc009yat.2_Intron	NM_006504	NP_006495
INPP5A	3632	broad.mit.edu	37	10	134517263	134517263	+	Intron	SNP	A	C	C			2012-696:2012-1305-T	g.chr10:134517263A>C	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
GPR123	84435	broad.mit.edu	37	10	134883065	134883065	+	5'Flank	SNP	T	G	G			2012-696:2012-1305-T	g.chr10:134883065T>G	uc001llw.2	+								
LRRK2	120892	broad.mit.edu	37	12	40707769	40707769	+	Intron	SNP	C	T	T			2012-696:2012-1305-T	g.chr12:40707769C>T	uc001rmg.3	+						LRRK2_uc009zjw.2_Intron|LRRK2_uc001rmi.2_Intron	NM_198578	NP_940980
GLI1	2735	broad.mit.edu	37	12	57853486	57853486	+	5'Flank	SNP	T	G	G			2012-696:2012-1305-T	g.chr12:57853486T>G	uc001snx.2	+						GLI1_uc009zpp.2_5'Flank|GLI1_uc009zpq.2_5'Flank|GLI1_uc009zpr.1_5'Flank	NM_005269	NP_005260
ASCL4	121549	broad.mit.edu	37	12	108168585	108168585	+	5'UTR	SNP	A	G	G	rs11113472	by1000genomes	2012-696:2012-1305-T	g.chr12:108168585A>G	uc001tmr.2	+	1						NM_203436	NP_982260
TMEM120B	144404	broad.mit.edu	37	12	122185426	122185426	+	Intron	SNP	G	A	A			2012-696:2012-1305-T	g.chr12:122185426G>A	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
GALNT9	50614	broad.mit.edu	37	12	132867996	132867996	+	Intron	SNP	A	C	C			2012-696:2012-1305-T	g.chr12:132867996A>C	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
COL4A2	1284	broad.mit.edu	37	13	111133897	111133897	+	Intron	SNP	C	T	T			2012-696:2012-1305-T	g.chr13:111133897C>T	uc001vqx.2	+							NM_001846	NP_001837
RASA3	22821	broad.mit.edu	37	13	114891570	114891570	+	Intron	SNP	T	C	C	rs28457827		2012-696:2012-1305-T	g.chr13:114891570T>C	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
CORO7	79585	broad.mit.edu	37	16	4394481	4394481	+	Intron	SNP	G	C	C			2012-696:2012-1305-T	g.chr16:4394481G>C	uc002cwf.2	-						CORO7_uc002cwe.2_Intron|TIMM16_uc002cwd.2_Intron	NM_024535	NP_078811
CORO7	79585	broad.mit.edu	37	16	4394565	4394565	+	Intron	SNP	G	A	A			2012-696:2012-1305-T	g.chr16:4394565G>A	uc002cwf.2	-						CORO7_uc002cwe.2_Intron|TIMM16_uc002cwd.2_Intron	NM_024535	NP_078811
PHKG2	5261	broad.mit.edu	37	16	30760548	30760548	+	Intron	SNP	T	G	G			2012-696:2012-1305-T	g.chr16:30760548T>G	uc002dzk.1	+						PHKG2_uc002dzi.1_Intron|PHKG2_uc002dzj.1_Intron|PHKG2_uc002dzl.1_Intron	NM_000294	NP_000285
CYLD	1540	broad.mit.edu	37	16	50830253	50830253	+	Missense_Mutation	SNP	A	T	T			2012-696:2012-1305-T	g.chr16:50830253A>T	uc002egp.1	+	19	3120	c.2705A>T	c.(2704-2706)AAC>ATC	p.N902I	CYLD_uc002egq.1_Missense_Mutation_p.N899I|CYLD_uc002egr.1_Missense_Mutation_p.N899I	NM_015247	NP_056062
SPIRE2	84501	broad.mit.edu	37	16	89919142	89919142	+	Intron	SNP	G	A	A			2012-696:2012-1305-T	g.chr16:89919142G>A	uc002foz.1	+						SPIRE2_uc010civ.1_Intron|SPIRE2_uc010ciw.1_Intron|SPIRE2_uc002fpa.1_Intron|SPIRE2_uc010cix.1_Intron	NM_032451	NP_115827
ABR	29	broad.mit.edu	37	17	1050093	1050093	+	Intron	SNP	A	C	C			2012-696:2012-1305-T	g.chr17:1050093A>C	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
KRT9	3857	broad.mit.edu	37	17	39723885	39723885	+	Silent	SNP	A	C	C			2012-696:2012-1305-T	g.chr17:39723885A>C	uc002hxe.3	-	7	1578	c.1512T>G	c.(1510-1512)GGT>GGG	p.G504G	JUP_uc010wfs.1_Intron	NM_000226	NP_000217
RPTOR	57521	broad.mit.edu	37	17	78904347	78904347	+	Intron	SNP	A	C	C			2012-696:2012-1305-T	g.chr17:78904347A>C	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
EPB41L3	23136	broad.mit.edu	37	18	5505731	5505731	+	Intron	SNP	A	C	C			2012-696:2012-1305-T	g.chr18:5505731A>C	uc002kmt.1	-						EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Intron|EPB41L3_uc010dkq.1_Intron|EPB41L3_uc010dks.1_Intron|EPB41L3_uc002kmv.1_Intron	NM_012307	NP_036439
RMND5A	64795	broad.mit.edu	37	2	87625322	87625322	+	Intron	SNP	A	C	C			2012-696:2012-1305-T	g.chr2:87625322A>C	uc002srs.3	+								
MYO7B	4648	broad.mit.edu	37	2	128376619	128376619	+	Intron	SNP	C	G	G			2012-696:2012-1305-T	g.chr2:128376619C>G	uc002top.2	+						MYO7B_uc002toq.1_5'Flank|MYO7B_uc002tor.1_5'Flank	NM_001080527	NP_001073996
C20orf26	26074	broad.mit.edu	37	20	20336081	20336081	+	Intron	SNP	G	A	A			2012-696:2012-1305-T	g.chr20:20336081G>A	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
BAGE2	85319	broad.mit.edu	37	21	11085602	11085602	+	Intron	SNP	C	T	T			2012-696:2012-1305-T	g.chr21:11085602C>T	uc002yit.1	-						BAGE_uc002yix.2_Intron	NM_182482	NP_872288
MPPED1	758	broad.mit.edu	37	22	43891812	43891812	+	Intron	SNP	A	G	G			2012-696:2012-1305-T	g.chr22:43891812A>G	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
MPPED1	758	broad.mit.edu	37	22	43896184	43896184	+	Intron	SNP	A	G	G			2012-696:2012-1305-T	g.chr22:43896184A>G	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
BBX	56987	broad.mit.edu	37	3	107380821	107380821	+	Intron	SNP	A	G	G	rs329926	by1000genomes	2012-696:2012-1305-T	g.chr3:107380821A>G	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Intron|BBX_uc003dwm.3_Intron	NM_001142568	NP_001136040
PCYT1A	5130	broad.mit.edu	37	3	195977912	195977912	+	Intron	SNP	C	T	T			2012-696:2012-1305-T	g.chr3:195977912C>T	uc003fwg.2	-						PCYT1A_uc003fwh.2_Intron	NM_005017	NP_005008
MAN2B2	23324	broad.mit.edu	37	4	6580952	6580952	+	Intron	SNP	C	T	T			2012-696:2012-1305-T	g.chr4:6580952C>T	uc003gjf.1	+						MAN2B2_uc003gje.1_Intron|MAN2B2_uc011bwf.1_Intron	NM_015274	NP_056089
SORCS2	57537	broad.mit.edu	37	4	7707890	7707890	+	Intron	SNP	T	C	C	rs112695922		2012-696:2012-1305-T	g.chr4:7707890T>C	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
TERT	7015	broad.mit.edu	37	5	1273577	1273577	+	Intron	SNP	C	T	T			2012-696:2012-1305-T	g.chr5:1273577C>T	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
E2F3	1871	broad.mit.edu	37	6	20401776	20401776	+	5'Flank	SNP	G	A	A			2012-696:2012-1305-T	g.chr6:20401776G>A	uc003nda.2	+						E2F3_uc003ncz.2_5'Flank	NM_001949	NP_001940
HLA-C	3107	broad.mit.edu	37	6	31237323	31237323	+	Intron	SNP	A	G	G	rs68094471		2012-696:2012-1305-T	g.chr6:31237323A>G	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_Intron|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron	NM_002117	NP_002108
T	6862	broad.mit.edu	37	6	166576234	166576234	+	Intron	SNP	C	G	G			2012-696:2012-1305-T	g.chr6:166576234C>G	uc003quu.1	-						T_uc003qut.1_Intron|T_uc003quv.1_Intron	NM_003181	NP_003172
EIF2AK1	27102	broad.mit.edu	37	7	6098972	6098972	+	5'Flank	SNP	T	G	G			2012-696:2012-1305-T	g.chr7:6098972T>G	uc003spp.2	-						EIF2AK1_uc003spq.2_5'Flank|EIF2AK1_uc011jwm.1_5'Flank	NM_014413	NP_055228
SLCO5A1	81796	broad.mit.edu	37	8	70747134	70747134	+	5'UTR	SNP	A	G	G			2012-696:2012-1305-T	g.chr8:70747134A>G	uc003xyl.2	-	1					SLCO5A1_uc010lzb.2_5'Flank|SLCO5A1_uc011lfa.1_5'Flank|SLCO5A1_uc003xyk.2_5'Flank|SLCO5A1_uc010lzc.2_5'Flank	NM_030958	NP_112220
CSMD3	114788	broad.mit.edu	37	8	113504960	113504960	+	Intron	SNP	G	T	T			2012-696:2012-1305-T	g.chr8:113504960G>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
LINGO2	158038	broad.mit.edu	37	9	28189443	28189443	+	Intron	SNP	G	A	A			2012-696:2012-1305-T	g.chr9:28189443G>A	uc003zqu.1	-						LINGO2_uc010mjf.1_Intron|LINGO2_uc003zqv.1_Intron	NM_152570	NP_689783
FANCC	2176	broad.mit.edu	37	9	97873957	97873957	+	Intron	SNP	A	G	G	rs4647534	by1000genomes	2012-696:2012-1305-T	g.chr9:97873957A>G	uc004avh.2	-						FANCC_uc004avi.3_Intron	NM_000136	NP_000127
CLCN4	1183	broad.mit.edu	37	X	10163169	10163169	+	Intron	SNP	A	C	C			2012-696:2012-1305-T	g.chrX:10163169A>C	uc004csy.3	+						CLCN4_uc011mid.1_Intron	NM_001830	NP_001821
FLG	2312	broad.mit.edu	37	1	152277767	152277767	+	Missense_Mutation	SNP	G	T	T			2012-699:2012-1304-T	g.chr1:152277767G>T	uc001ezu.1	-	3	9631	c.9595C>A	c.(9595-9597)CAG>AAG	p.Q3199K		NM_002016	NP_002007
MDM4	4194	broad.mit.edu	37	1	204485123	204485123	+	5'Flank	SNP	C	T	T			2012-699:2012-1304-T	g.chr1:204485123C>T	uc001hba.2	+						MDM4_uc001hbd.1_5'Flank|MDM4_uc010pqw.1_5'Flank|MDM4_uc010pqx.1_5'Flank|MDM4_uc001hay.1_5'Flank|MDM4_uc001hbb.2_5'Flank|MDM4_uc010pqy.1_5'Flank|MDM4_uc001hbc.2_5'Flank	NM_002393	NP_002384
SMYD3	64754	broad.mit.edu	37	1	246139851	246139851	+	Intron	SNP	T	C	C			2012-699:2012-1304-T	g.chr1:246139851T>C	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
GPR123	84435	broad.mit.edu	37	10	134891599	134891599	+	Intron	SNP	C	T	T			2012-699:2012-1304-T	g.chr10:134891599C>T	uc001llw.2	+								
KNDC1	85442	broad.mit.edu	37	10	134998762	134998762	+	Intron	SNP	A	G	G			2012-699:2012-1304-T	g.chr10:134998762A>G	uc001llz.1	+						KNDC1_uc001lma.1_Intron	NM_152643	NP_689856
KNDC1	85442	broad.mit.edu	37	10	134998788	134998788	+	Intron	SNP	A	G	G			2012-699:2012-1304-T	g.chr10:134998788A>G	uc001llz.1	+						KNDC1_uc001lma.1_Intron	NM_152643	NP_689856
MUC5B	727897	broad.mit.edu	37	11	1212954	1212954	+	Intron	SNP	C	A	A	rs35216491	by1000genomes	2012-699:2012-1304-T	g.chr11:1212954C>A	uc009ycr.1	+						uc001lsz.2_5'Flank	NM_017511	NP_059981
TSPAN9	10867	broad.mit.edu	37	12	3377563	3377563	+	Intron	SNP	T	C	C			2012-699:2012-1304-T	g.chr12:3377563T>C	uc001qlp.2	+							NM_006675	NP_006666
TSPAN9	10867	broad.mit.edu	37	12	3377583	3377584	+	Intron	DNP	CG	TC	TC			2012-699:2012-1304-T	g.chr12:3377583_3377584CG>TC	uc001qlp.2	+							NM_006675	NP_006666
TSPAN9	10867	broad.mit.edu	37	12	3377587	3377587	+	Intron	SNP	C	T	T			2012-699:2012-1304-T	g.chr12:3377587C>T	uc001qlp.2	+							NM_006675	NP_006666
ENOX1	55068	broad.mit.edu	37	13	43867237	43867237	+	Intron	SNP	A	C	C			2012-699:2012-1304-T	g.chr13:43867237A>C	uc001uza.3	-						ENOX1_uc001uzb.3_Intron|ENOX1_uc001uzc.3_Intron|ENOX1_uc001uyz.3_Intron	NM_001127615	NP_001121087
GPC5	2262	broad.mit.edu	37	13	92345839	92345839	+	Silent	SNP	C	T	T			2012-699:2012-1304-T	g.chr13:92345839C>T	uc010tif.1	+	3	1090	c.724C>T	c.(724-726)CTG>TTG	p.L242L		NM_004466	NP_004457
DCT	1638	broad.mit.edu	37	13	95112451	95112451	+	Missense_Mutation	SNP	T	C	C			2012-699:2012-1304-T	g.chr13:95112451T>C	uc001vlv.3	-	6	1500	c.1073A>G	c.(1072-1074)GAT>GGT	p.D358G	DCT_uc010afh.2_Missense_Mutation_p.D358G	NM_001922	NP_001913
COL4A2	1284	broad.mit.edu	37	13	111007864	111007864	+	Intron	SNP	T	G	G			2012-699:2012-1304-T	g.chr13:111007864T>G	uc001vqx.2	+							NM_001846	NP_001837
F7	2155	broad.mit.edu	37	13	113761687	113761687	+	Intron	SNP	G	A	A			2012-699:2012-1304-T	g.chr13:113761687G>A	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
RASA3	22821	broad.mit.edu	37	13	114891570	114891570	+	Intron	SNP	T	C	C	rs28457827		2012-699:2012-1304-T	g.chr13:114891570T>C	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
RAD51L1	5890	broad.mit.edu	37	14	68290285	68290285	+	Missense_Mutation	SNP	G	A	A	rs34583846	byFrequency;by1000genomes	2012-699:2012-1304-T	g.chr14:68290285G>A	uc001xkf.1	+	2	89	c.25G>A	c.(25-27)GTG>ATG	p.V9M	RAD51L1_uc010aqq.2_Missense_Mutation_p.V9M|RAD51L1_uc001xkd.2_Missense_Mutation_p.V9M|RAD51L1_uc010aqr.2_Translation_Start_Site|RAD51L1_uc001xke.2_Missense_Mutation_p.V9M|RAD51L1_uc010aqs.1_Missense_Mutation_p.V9M|RAD51L1_uc001xkg.1_Missense_Mutation_p.V9M	NM_133509	NP_598193
TMEM8A	58986	broad.mit.edu	37	16	428253	428253	+	Intron	SNP	C	G	G	rs62030803	by1000genomes	2012-699:2012-1304-T	g.chr16:428253C>G	uc002cgu.3	-						TMEM8A_uc002cgv.3_Intron	NM_021259	NP_067082
TSC2	7249	broad.mit.edu	37	16	2105345	2105345	+	Intron	SNP	A	G	G			2012-699:2012-1304-T	g.chr16:2105345A>G	uc002con.2	+						TSC2_uc010bsd.2_Intron|TSC2_uc002coo.2_Intron|TSC2_uc010uvv.1_Intron|TSC2_uc010uvw.1_Intron|TSC2_uc002cop.2_Intron	NM_000548	NP_000539
TSC2	7249	broad.mit.edu	37	16	2122920	2122920	+	Missense_Mutation	SNP	T	A	A			2012-699:2012-1304-T	g.chr16:2122920T>A	uc002con.2	+	21	2397	c.2291T>A	c.(2290-2292)CTG>CAG	p.L764Q	TSC2_uc010bsd.2_Missense_Mutation_p.L764Q|TSC2_uc002coo.2_Missense_Mutation_p.L764Q|TSC2_uc010uvv.1_Missense_Mutation_p.L727Q|TSC2_uc010uvw.1_Missense_Mutation_p.L715Q|TSC2_uc002cop.2_Missense_Mutation_p.L564Q	NM_000548	NP_000539
TRIM72	493829	broad.mit.edu	37	16	31233351	31233351	+	Intron	SNP	C	A	A			2012-699:2012-1304-T	g.chr16:31233351C>A	uc002ebn.1	+							NM_001008274	NP_001008275
RPH3AL	9501	broad.mit.edu	37	17	157153	157153	+	Intron	SNP	T	C	C			2012-699:2012-1304-T	g.chr17:157153T>C	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	1046515	1046515	+	Intron	SNP	A	G	G			2012-699:2012-1304-T	g.chr17:1046515A>G	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
GAS7	8522	broad.mit.edu	37	17	9821388	9821388	+	Missense_Mutation	SNP	A	C	C			2012-699:2012-1304-T	g.chr17:9821388A>C	uc002gmg.1	-	13	1408	c.1247T>G	c.(1246-1248)GTA>GGA	p.V416G	GAS7_uc010vvc.1_Missense_Mutation_p.V230G|GAS7_uc002gmh.1_Missense_Mutation_p.V276G|GAS7_uc010vvd.1_Missense_Mutation_p.V368G|GAS7_uc002gmi.2_Missense_Mutation_p.V352G|GAS7_uc002gmj.1_Missense_Mutation_p.V356G|GAS7_uc010coh.1_Missense_Mutation_p.V356G	NM_201433	NP_958839
10-Mar	162333	broad.mit.edu	37	17	60871060	60871060	+	Intron	SNP	T	C	C	rs148392127	by1000genomes	2012-699:2012-1304-T	g.chr17:60871060T>C	uc010ddr.2	-						MARCH10_uc002jag.3_Intron|MARCH10_uc010dds.2_Intron|MARCH10_uc002jah.2_Intron	NM_001100875	NP_001094345
PRKCA	5578	broad.mit.edu	37	17	64795190	64795190	+	Intron	SNP	G	T	T			2012-699:2012-1304-T	g.chr17:64795190G>T	uc002jfp.1	+							NM_002737	NP_002728
PRKCA	5578	broad.mit.edu	37	17	64795585	64795585	+	Intron	SNP	T	C	C			2012-699:2012-1304-T	g.chr17:64795585T>C	uc002jfp.1	+							NM_002737	NP_002728
RPTOR	57521	broad.mit.edu	37	17	78814156	78814156	+	Intron	SNP	G	A	A	rs113199399		2012-699:2012-1304-T	g.chr17:78814156G>A	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78814173	78814173	+	Intron	SNP	A	G	G	rs148700666	by1000genomes	2012-699:2012-1304-T	g.chr17:78814173A>G	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
TPRX1	284355	broad.mit.edu	37	19	48305634	48305634	+	Missense_Mutation	SNP	A	G	G			2012-699:2012-1304-T	g.chr19:48305634A>G	uc002php.1	-	2	705	c.634T>C	c.(634-636)TCA>CCA	p.S212P		NM_198479	NP_940881
PPP1R12C	54776	broad.mit.edu	37	19	55621724	55621724	+	Intron	SNP	G	A	A			2012-699:2012-1304-T	g.chr19:55621724G>A	uc002qix.2	-						PPP1R12C_uc010yfs.1_Intron|PPP1R12C_uc002qiy.2_Intron	NM_017607	NP_060077
NLRP11	204801	broad.mit.edu	37	19	56307547	56307547	+	Missense_Mutation	SNP	A	C	C			2012-699:2012-1304-T	g.chr19:56307547A>C	uc010ygf.1	-	8	2952	c.2241T>G	c.(2239-2241)AGT>AGG	p.S747R	NLRP11_uc002qlz.2_Missense_Mutation_p.S594R|NLRP11_uc002qmb.2_Missense_Mutation_p.S648R|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444
NLRP4	147945	broad.mit.edu	37	19	56361878	56361878	+	Intron	SNP	T	A	A	rs79264528		2012-699:2012-1304-T	g.chr19:56361878T>A	uc002qmd.3	+							NM_134444	NP_604393
NLRP4	147945	broad.mit.edu	37	19	56362675	56362675	+	Intron	SNP	C	A	A			2012-699:2012-1304-T	g.chr19:56362675C>A	uc002qmd.3	+							NM_134444	NP_604393
PXDN	7837	broad.mit.edu	37	2	1714522	1714522	+	Intron	SNP	C	T	T			2012-699:2012-1304-T	g.chr2:1714522C>T	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87644456	87644456	+	Intron	SNP	G	A	A			2012-699:2012-1304-T	g.chr2:87644456G>A	uc002srs.3	+								
CLASP1	23332	broad.mit.edu	37	2	122368822	122368822	+	Intron	SNP	C	A	A			2012-699:2012-1304-T	g.chr2:122368822C>A	uc002tnc.2	-						CLASP1_uc010yyz.1_Intron|CLASP1_uc010yza.1_Intron|CLASP1_uc010yzb.1_Intron|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Intron	NM_015282	NP_056097
LRP1B	53353	broad.mit.edu	37	2	141739753	141739753	+	Nonsense_Mutation	SNP	G	A	A			2012-699:2012-1304-T	g.chr2:141739753G>A	uc002tvj.1	-	18	3835	c.2863C>T	c.(2863-2865)CAG>TAG	p.Q955*	LRP1B_uc010fnl.1_Nonsense_Mutation_p.Q137*	NM_018557	NP_061027
AGAP1	116987	broad.mit.edu	37	2	236473308	236473308	+	Intron	SNP	C	T	T	rs71064857		2012-699:2012-1304-T	g.chr2:236473308C>T	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
MYH7B	57644	broad.mit.edu	37	20	33583254	33583254	+	Missense_Mutation	SNP	T	G	G			2012-699:2012-1304-T	g.chr20:33583254T>G	uc002xbi.1	+	26	3034	c.2942T>G	c.(2941-2943)GTG>GGG	p.V981G		NM_020884	NP_065935
MYT1	4661	broad.mit.edu	37	20	62866379	62866379	+	Intron	SNP	T	C	C			2012-699:2012-1304-T	g.chr20:62866379T>C	uc002yii.2	+						MYT1_uc002yij.2_Intron	NM_004535	NP_004526
C21orf56	84221	broad.mit.edu	37	21	47590321	47590321	+	Intron	SNP	G	T	T			2012-699:2012-1304-T	g.chr21:47590321G>T	uc011afu.1	-						C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
MICAL3	57553	broad.mit.edu	37	22	18359825	18359825	+	Intron	SNP	G	A	A			2012-699:2012-1304-T	g.chr22:18359825G>A	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
PHF21B	112885	broad.mit.edu	37	22	45280198	45280198	+	Intron	SNP	C	G	G			2012-699:2012-1304-T	g.chr22:45280198C>G	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
RAF1	5894	broad.mit.edu	37	3	12626582	12626582	+	Intron	SNP	T	C	C			2012-699:2012-1304-T	g.chr3:12626582T>C	uc003bxf.3	-						RAF1_uc011aut.1_Intron|RAF1_uc011auu.1_Intron	NM_002880	NP_002871
CHCHD6	84303	broad.mit.edu	37	3	126581148	126581148	+	Intron	SNP	T	C	C			2012-699:2012-1304-T	g.chr3:126581148T>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
CHCHD6	84303	broad.mit.edu	37	3	126582300	126582300	+	Intron	SNP	T	C	C			2012-699:2012-1304-T	g.chr3:126582300T>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
RNF212	285498	broad.mit.edu	37	4	1072920	1072920	+	Intron	SNP	A	G	G	rs113125575		2012-699:2012-1304-T	g.chr4:1072920A>G	uc003gcj.2	-						RNF212_uc003gch.2_Intron|RNF212_uc003gci.2_Intron|RNF212_uc010ibp.2_Intron|RNF212_uc010ibq.2_Intron	NM_001131034	NP_001124506
NOP14	8602	broad.mit.edu	37	4	2947776	2947776	+	Intron	SNP	T	G	G			2012-699:2012-1304-T	g.chr4:2947776T>G	uc003ggj.1	-						C4orf10_uc003gge.1_Intron|C4orf10_uc003ggh.2_Intron|C4orf10_uc003ggi.1_Intron|NOP14_uc010icp.2_Intron|NOP14_uc003ggk.3_Intron|NOP14_uc003ggl.2_Intron	NM_003703	NP_003694
SORBS2	8470	broad.mit.edu	37	4	186717994	186717994	+	Intron	SNP	G	A	A			2012-699:2012-1304-T	g.chr4:186717994G>A	uc003iyl.2	-						SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Intron|SORBS2_uc011cky.1_Intron|SORBS2_uc003iyp.2_Intron	NM_021069	NP_066547
NRG2	9542	broad.mit.edu	37	5	139422604	139422604	+	Silent	SNP	A	C	C			2012-699:2012-1304-T	g.chr5:139422604A>C	uc003lex.1	-	1	276	c.51T>G	c.(49-51)GGT>GGG	p.G17G	NRG2_uc003lev.1_Silent_p.G17G|NRG2_uc003lew.1_Silent_p.G17G|NRG2_uc003ley.1_Silent_p.G17G	NM_004883	NP_004874
BTNL9	153579	broad.mit.edu	37	5	180473217	180473217	+	Intron	SNP	C	T	T			2012-699:2012-1304-T	g.chr5:180473217C>T	uc003mmt.2	+						BTNL9_uc011dhi.1_Intron	NM_152547	NP_689760
HIST1H4E	8367	broad.mit.edu	37	6	26204939	26204939	+	Silent	SNP	C	T	T			2012-699:2012-1304-T	g.chr6:26204939C>T	uc003ngy.2	+	1	67	c.67C>T	c.(67-69)CTG>TTG	p.L23L		NM_003545	NP_003536
C7orf50	84310	broad.mit.edu	37	7	1056524	1056524	+	Intron	SNP	A	G	G	rs112815438	by1000genomes	2012-699:2012-1304-T	g.chr7:1056524A>G	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
CARD11	84433	broad.mit.edu	37	7	2976910	2976910	+	Intron	SNP	A	C	C			2012-699:2012-1304-T	g.chr7:2976910A>C	uc003smv.2	-							NM_032415	NP_115791
EIF2AK1	27102	broad.mit.edu	37	7	6098972	6098972	+	5'Flank	SNP	T	G	G			2012-699:2012-1304-T	g.chr7:6098972T>G	uc003spp.2	-						EIF2AK1_uc003spq.2_5'Flank|EIF2AK1_uc011jwm.1_5'Flank	NM_014413	NP_055228
PTPRN2	5799	broad.mit.edu	37	7	157392789	157392789	+	Intron	SNP	C	A	A			2012-699:2012-1304-T	g.chr7:157392789C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157392797	157392797	+	Intron	SNP	C	A	A			2012-699:2012-1304-T	g.chr7:157392797C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ZFP41	286128	broad.mit.edu	37	8	144342202	144342202	+	3'UTR	SNP	G	C	C			2012-699:2012-1304-T	g.chr8:144342202G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
GSDMD	79792	broad.mit.edu	37	8	144639487	144639487	+	Intron	SNP	G	A	A			2012-699:2012-1304-T	g.chr8:144639487G>A	uc010mfe.2	+						uc003yye.2_RNA|GSDMD_uc003yyf.2_5'Flank|GSDMD_uc003yyi.2_5'Flank|GSDMD_uc003yyg.2_5'Flank|GSDMD_uc003yyh.2_5'Flank	NM_024736	NP_079012
ARHGAP39	80728	broad.mit.edu	37	8	145913244	145913244	+	5'Flank	SNP	T	C	C			2012-699:2012-1304-T	g.chr8:145913244T>C	uc011llk.1	-							NM_025251	NP_079527
ADAMTSL1	92949	broad.mit.edu	37	9	18639427	18639427	+	Intron	SNP	A	C	C			2012-699:2012-1304-T	g.chr9:18639427A>C	uc003zne.3	+						ADAMTSL1_uc003znb.2_Intron|ADAMTSL1_uc003znc.3_Intron	NM_001040272	NP_001035362
PBX3	5090	broad.mit.edu	37	9	128678194	128678194	+	Silent	SNP	G	A	A			2012-699:2012-1304-T	g.chr9:128678194G>A	uc004bqb.2	+	3	620	c.504G>A	c.(502-504)GAG>GAA	p.E168E	PBX3_uc004bqc.2_Intron|PBX3_uc004bqd.2_Intron|PBX3_uc011lzw.1_Silent_p.E93E|PBX3_uc011lzx.1_Silent_p.E79E|PBX3_uc004bqe.2_Silent_p.E55E	NM_006195	NP_006186
POMT1	10585	broad.mit.edu	37	9	134391432	134391432	+	Intron	SNP	G	A	A	rs35076804		2012-699:2012-1304-T	g.chr9:134391432G>A	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
NACC2	138151	broad.mit.edu	37	9	138916159	138916159	+	Intron	SNP	T	G	G	rs72177091		2012-699:2012-1304-T	g.chr9:138916159T>G	uc004cgw.2	-						NACC2_uc010nbh.2_Intron	NM_144653	NP_653254
KIF1B	23095	broad.mit.edu	37	1	10292552	10292552	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr1:10292552C>T	uc001aqx.3	+						KIF1B_uc001aqv.3_Intron|KIF1B_uc001aqw.3_Intron|KIF1B_uc001aqy.2_Intron|KIF1B_uc001aqz.2_Intron|KIF1B_uc001ara.2_Intron|KIF1B_uc001arb.2_Intron|KIF1B_uc009vmt.2_Intron	NM_015074	NP_055889
IGSF21	84966	broad.mit.edu	37	1	18690265	18690265	+	Intron	SNP	A	G	G			2012-701:2012-1307-T	g.chr1:18690265A>G	uc001bau.1	+						IGSF21_uc001bav.1_Intron	NM_032880	NP_116269
MACF1	23499	broad.mit.edu	37	1	39798573	39798573	+	Missense_Mutation	SNP	G	T	T			2012-701:2012-1307-T	g.chr1:39798573G>T	uc010oiu.1	+	1	1764	c.1633G>T	c.(1633-1635)GTA>TTA	p.V545L	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033
C1orf173	127254	broad.mit.edu	37	1	75038087	75038087	+	Missense_Mutation	SNP	C	T	T			2012-701:2012-1307-T	g.chr1:75038087C>T	uc001dgg.2	-	14	3526	c.3307G>A	c.(3307-3309)GGG>AGG	p.G1103R		NM_001002912	NP_001002912
WDR63	126820	broad.mit.edu	37	1	85550286	85550286	+	Missense_Mutation	SNP	T	C	C			2012-701:2012-1307-T	g.chr1:85550286T>C	uc001dkt.2	+	6	639	c.448T>C	c.(448-450)TAT>CAT	p.Y150H	WDR63_uc009wcl.2_Missense_Mutation_p.Y150H	NM_145172	NP_660155
SPTA1	6708	broad.mit.edu	37	1	158596535	158596535	+	Intron	SNP	T	G	G			2012-701:2012-1307-T	g.chr1:158596535T>G	uc001fst.1	-							NM_003126	NP_003117
SMYD3	64754	broad.mit.edu	37	1	246139415	246139415	+	Intron	SNP	A	G	G			2012-701:2012-1307-T	g.chr1:246139415A>G	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
CUBN	8029	broad.mit.edu	37	10	16882924	16882924	+	Silent	SNP	T	C	C			2012-701:2012-1307-T	g.chr10:16882924T>C	uc001ioo.2	-	61	9838	c.9786A>G	c.(9784-9786)TTA>TTG	p.L3262L		NM_001081	NP_001072
CCDC6	8030	broad.mit.edu	37	10	61641831	61641831	+	Intron	SNP	G	C	C			2012-701:2012-1307-T	g.chr10:61641831G>C	uc001jks.3	-							NM_005436	NP_005427
ELP4	26610	broad.mit.edu	37	11	31648611	31648611	+	Intron	SNP	A	C	C			2012-701:2012-1307-T	g.chr11:31648611A>C	uc001mtb.2	+						ELP4_uc001mta.1_Intron|ELP4_uc001mtc.2_Intron|ELP4_uc010rdz.1_Intron	NM_019040	NP_061913
B4GALNT3	283358	broad.mit.edu	37	12	621310	621310	+	Intron	SNP	A	G	G	rs143536331		2012-701:2012-1307-T	g.chr12:621310A>G	uc001qii.1	+							NM_173593	NP_775864
EPS8	2059	broad.mit.edu	37	12	15942988	15942988	+	5'Flank	SNP	A	C	C			2012-701:2012-1307-T	g.chr12:15942988A>C	uc001rdb.2	-						EPS8_uc009zig.2_5'Flank	NM_004447	NP_004438
SLC2A13	114134	broad.mit.edu	37	12	40265626	40265626	+	Missense_Mutation	SNP	C	G	G			2012-701:2012-1307-T	g.chr12:40265626C>G	uc010skm.1	-	5	1223	c.1172G>C	c.(1171-1173)AGA>ACA	p.R391T	C12orf40_uc009zjv.1_Intron|SLC2A13_uc001rme.1_Missense_Mutation_p.R38T	NM_052885	NP_443117
RB1	5925	broad.mit.edu	37	13	48877719	48877719	+	5'Flank	SNP	C	T	T			2012-701:2012-1307-T	g.chr13:48877719C>T	uc001vcb.2	+						RB1_uc010acs.1_5'Flank|uc001vca.2_RNA	NM_000321	NP_000312
PCDH17	27253	broad.mit.edu	37	13	58206592	58206592	+	5'UTR	SNP	G	A	A			2012-701:2012-1307-T	g.chr13:58206592G>A	uc001vhq.1	+	1					PCDH17_uc010aec.1_5'UTR	NM_001040429	NP_001035519
TFDP1	7027	broad.mit.edu	37	13	114280364	114280364	+	Intron	SNP	T	C	C			2012-701:2012-1307-T	g.chr13:114280364T>C	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
TRIP11	9321	broad.mit.edu	37	14	92469561	92469561	+	Intron	SNP	C	A	A			2012-701:2012-1307-T	g.chr14:92469561C>A	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
GABRB3	2562	broad.mit.edu	37	15	26866443	26866443	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr15:26866443C>T	uc001zaz.2	-						GABRB3_uc010uae.1_Intron|GABRB3_uc001zba.2_Intron|GABRB3_uc001zbb.2_Intron|GABRB3_uc001zbc.2_Intron	NM_000814	NP_000805
LMF1	64788	broad.mit.edu	37	16	1003530	1003530	+	Intron	SNP	T	C	C			2012-701:2012-1307-T	g.chr16:1003530T>C	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
C1QTNF8	390664	broad.mit.edu	37	16	1142977	1142977	+	Intron	SNP	C	G	G			2012-701:2012-1307-T	g.chr16:1142977C>G	uc010uuw.1	-							NM_207419	NP_997302
RPH3AL	9501	broad.mit.edu	37	17	137330	137330	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr17:137330G>A	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
MYH13	8735	broad.mit.edu	37	17	10212892	10212892	+	Missense_Mutation	SNP	G	A	A			2012-701:2012-1307-T	g.chr17:10212892G>A	uc002gmk.1	-	34	5002	c.4912C>T	c.(4912-4914)CGC>TGC	p.R1638C		NM_003802	NP_003793
RPTOR	57521	broad.mit.edu	37	17	78814173	78814173	+	Intron	SNP	A	G	G	rs148700666	by1000genomes	2012-701:2012-1307-T	g.chr17:78814173A>G	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
SLC16A3	9123	broad.mit.edu	37	17	80185458	80185458	+	5'Flank	SNP	T	G	G	rs144355328	by1000genomes	2012-701:2012-1307-T	g.chr17:80185458T>G	uc002kea.2	+						SLC16A3_uc002keb.2_5'Flank	NM_001042422	NP_001035887
ZNF69	7620	broad.mit.edu	37	19	12022858	12022858	+	Intron	SNP	G	T	T			2012-701:2012-1307-T	g.chr19:12022858G>T	uc002mst.3	+							NM_021915	NP_068734
NTN5	126147	broad.mit.edu	37	19	49172622	49172622	+	Intron	SNP	A	G	G			2012-701:2012-1307-T	g.chr19:49172622A>G	uc002pkb.2	-						SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Intron	NM_145807	NP_665806
SHANK1	50944	broad.mit.edu	37	19	51203269	51203269	+	Intron	SNP	A	G	G			2012-701:2012-1307-T	g.chr19:51203269A>G	uc002psx.1	-							NM_016148	NP_057232
NLRP4	147945	broad.mit.edu	37	19	56362328	56362328	+	Intron	SNP	G	T	T			2012-701:2012-1307-T	g.chr19:56362328G>T	uc002qmd.3	+							NM_134444	NP_604393
SNTG2	54221	broad.mit.edu	37	2	1112293	1112293	+	Intron	SNP	C	A	A			2012-701:2012-1307-T	g.chr2:1112293C>A	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
TPO	7173	broad.mit.edu	37	2	1521328	1521328	+	Intron	SNP	T	A	A			2012-701:2012-1307-T	g.chr2:1521328T>A	uc002qww.2	+						TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Intron|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Intron|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538
PXDN	7837	broad.mit.edu	37	2	1708291	1708291	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr2:1708291G>A	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
MYT1L	23040	broad.mit.edu	37	2	1801659	1801659	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr2:1801659C>T	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron|MYT1L_uc010ewk.2_Intron	NM_015025	NP_055840
LRRTM1	347730	broad.mit.edu	37	2	80529399	80529399	+	Missense_Mutation	SNP	G	A	A			2012-701:2012-1307-T	g.chr2:80529399G>A	uc002sok.1	-	2	1816	c.1546C>T	c.(1546-1548)CCC>TCC	p.P516S	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161
RMND5A	64795	broad.mit.edu	37	2	87642929	87642929	+	Intron	SNP	C	G	G			2012-701:2012-1307-T	g.chr2:87642929C>G	uc002srs.3	+								
LRP1B	53353	broad.mit.edu	37	2	141115773	141115773	+	Intron	SNP	A	G	G			2012-701:2012-1307-T	g.chr2:141115773A>G	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141232983	141232983	+	Intron	SNP	G	C	C			2012-701:2012-1307-T	g.chr2:141232983G>C	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141474079	141474079	+	Intron	SNP	G	T	T			2012-701:2012-1307-T	g.chr2:141474079G>T	uc002tvj.1	-							NM_018557	NP_061027
ZEB2	9839	broad.mit.edu	37	2	145155754	145155754	+	Intron	SNP	A	T	T			2012-701:2012-1307-T	g.chr2:145155754A>T	uc002tvu.2	-						ZEB2_uc002tvv.2_Intron|ZEB2_uc010zbm.1_Intron|ZEB2_uc010fnp.2_Intron	NM_014795	NP_055610
NFE2L2	4780	broad.mit.edu	37	2	178128533	178128533	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr2:178128533G>A	uc002ulh.3	-						NFE2L2_uc002ulg.3_5'UTR|NFE2L2_uc010zfa.1_5'UTR|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_5'UTR|NFE2L2_uc010frb.2_5'UTR	NM_006164	NP_006155
TTN	7273	broad.mit.edu	37	2	179584140	179584140	+	Missense_Mutation	SNP	C	A	A			2012-701:2012-1307-T	g.chr2:179584140C>A	uc010zfg.1	-	80	20469	c.20245G>T	c.(20245-20247)GAC>TAC	p.D6749Y	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D3410Y	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179665210	179665210	+	Silent	SNP	T	C	C			2012-701:2012-1307-T	g.chr2:179665210T>C	uc002und.2	-	4	720	c.495A>G	c.(493-495)GAA>GAG	p.E165E	TTN_uc010zfg.1_Silent_p.E165E|TTN_uc010zfh.1_Silent_p.E165E|TTN_uc010zfi.1_Silent_p.E165E|TTN_uc010zfj.1_Silent_p.E165E|TTN_uc002unb.2_Silent_p.E165E		
MLPH	79083	broad.mit.edu	37	2	238451597	238451597	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr2:238451597G>A	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
KCNQ2	3785	broad.mit.edu	37	20	62093662	62093663	+	Intron	DNP	TG	CT	CT			2012-701:2012-1307-T	g.chr20:62093662_62093663TG>CT	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron|KCNQ2_uc002yfc.1_Intron	NM_172107	NP_742105
BAGE2	85319	broad.mit.edu	37	21	11039299	11039299	+	3'UTR	SNP	T	A	A			2012-701:2012-1307-T	g.chr21:11039299T>A	uc002yit.1	-	6					TPTE_uc002yis.1_RNA	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11085658	11085658	+	Intron	SNP	C	T	T	rs144000767	by1000genomes	2012-701:2012-1307-T	g.chr21:11085658C>T	uc002yit.1	-						BAGE_uc002yix.2_Intron	NM_182482	NP_872288
BAGE2	85319	broad.mit.edu	37	21	11098564	11098564	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr21:11098564G>A	uc002yit.1	-						BAGE_uc002yix.2_Intron	NM_182482	NP_872288
CELSR3	1951	broad.mit.edu	37	3	48685819	48685819	+	Missense_Mutation	SNP	G	T	T			2012-701:2012-1307-T	g.chr3:48685819G>T	uc003cul.2	-	19	7134	c.6853C>A	c.(6853-6855)CCT>ACT	p.P2285T	CELSR3_uc003cuf.1_Missense_Mutation_p.P2355T|CELSR3_uc010hkg.2_Missense_Mutation_p.P268T	NM_001407	NP_001398
PBRM1	55193	broad.mit.edu	37	3	52643790	52643790	+	Silent	SNP	C	T	T			2012-701:2012-1307-T	g.chr3:52643790C>T	uc003des.2	-	16	2118	c.2106G>A	c.(2104-2106)AAG>AAA	p.K702K	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Silent_p.K702K|PBRM1_uc003der.2_Silent_p.K670K|PBRM1_uc003det.2_Silent_p.K717K|PBRM1_uc003deu.2_Silent_p.K717K|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Silent_p.K702K|PBRM1_uc010hmk.1_Silent_p.K702K|PBRM1_uc003dey.2_Silent_p.K702K|PBRM1_uc003dez.1_Silent_p.K702K|PBRM1_uc003dfb.1_Silent_p.K615K|PBRM1_uc003dfa.1_Silent_p.K48K|PBRM1_uc003dfc.2_Silent_p.K69K	NM_181042	NP_060635
ROBO2	6092	broad.mit.edu	37	3	77459676	77459676	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr3:77459676C>T	uc003dpy.3	+						ROBO2_uc003dpz.2_Intron|ROBO2_uc011bgj.1_Intron|ROBO2_uc011bgk.1_Intron	NM_002942	NP_002933
CHCHD6	84303	broad.mit.edu	37	3	126582025	126582025	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr3:126582025C>T	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
ETV5	2119	broad.mit.edu	37	3	185827253	185827253	+	5'Flank	SNP	A	G	G			2012-701:2012-1307-T	g.chr3:185827253A>G	uc003fpz.2	-						ETV5_uc003fpy.2_5'Flank	NM_004454	NP_004445
C3orf21	152002	broad.mit.edu	37	3	194824172	194824172	+	Intron	SNP	A	G	G	rs62290289	by1000genomes	2012-701:2012-1307-T	g.chr3:194824172A>G	uc003fum.3	-						C3orf21_uc003ful.2_Intron|C3orf21_uc003fuk.2_Intron	NM_152531	NP_689744
GUF1	60558	broad.mit.edu	37	4	44680107	44680107	+	5'Flank	SNP	T	G	G			2012-701:2012-1307-T	g.chr4:44680107T>G	uc003gww.3	+						GUF1_uc010ifz.1_5'Flank	NM_021927	NP_068746
REST	5978	broad.mit.edu	37	4	57775490	57775490	+	Intron	SNP	T	G	G			2012-701:2012-1307-T	g.chr4:57775490T>G	uc003hch.2	+						REST_uc003hci.2_Intron|REST_uc003hcj.1_5'Flank|REST_uc010ihf.2_5'Flank	NM_005612	NP_005603
INPP4B	8821	broad.mit.edu	37	4	143044513	143044513	+	Missense_Mutation	SNP	G	T	T			2012-701:2012-1307-T	g.chr4:143044513G>T	uc003iix.3	-	21	2544	c.1949C>A	c.(1948-1950)CCA>CAA	p.P650Q	INPP4B_uc003iiw.3_Missense_Mutation_p.P650Q|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Missense_Mutation_p.P465Q|INPP4B_uc011cho.1_RNA|INPP4B_uc011chp.1_Missense_Mutation_p.P521Q	NM_003866	NP_003857
INPP4B	8821	broad.mit.edu	37	4	143094841	143094841	+	Missense_Mutation	SNP	C	A	A			2012-701:2012-1307-T	g.chr4:143094841C>A	uc003iix.3	-	17	1898	c.1303G>T	c.(1303-1305)GCA>TCA	p.A435S	INPP4B_uc003iiw.3_Missense_Mutation_p.A435S|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Missense_Mutation_p.A250S|INPP4B_uc011cho.1_RNA|INPP4B_uc011chp.1_Missense_Mutation_p.A306S	NM_003866	NP_003857
FSTL5	56884	broad.mit.edu	37	4	162463800	162463800	+	Missense_Mutation	SNP	G	T	T			2012-701:2012-1307-T	g.chr4:162463800G>T	uc003iqh.2	-	9	1497	c.1061C>A	c.(1060-1062)CCT>CAT	p.P354H	FSTL5_uc003iqi.2_Missense_Mutation_p.P353H|FSTL5_uc010iqv.2_Missense_Mutation_p.P353H	NM_020116	NP_064501
FSTL5	56884	broad.mit.edu	37	4	162841782	162841782	+	Silent	SNP	A	G	G			2012-701:2012-1307-T	g.chr4:162841782A>G	uc003iqh.2	-	4	619	c.183T>C	c.(181-183)CCT>CCC	p.P61P	FSTL5_uc003iqi.2_Silent_p.P60P|FSTL5_uc010iqv.2_Silent_p.P60P	NM_020116	NP_064501
FAT1	2195	broad.mit.edu	37	4	187540368	187540368	+	Nonsense_Mutation	SNP	T	A	A			2012-701:2012-1307-T	g.chr4:187540368T>A	uc003izf.2	-	10	7560	c.7372A>T	c.(7372-7374)AAG>TAG	p.K2458*		NM_005245	NP_005236
SLC9A3	6550	broad.mit.edu	37	5	487119	487119	+	Intron	SNP	T	A	A			2012-701:2012-1307-T	g.chr5:487119T>A	uc003jbe.2	-						SLC9A3_uc011clx.1_Intron	NM_004174	NP_004165
NKD2	85409	broad.mit.edu	37	5	1026153	1026153	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr5:1026153C>T	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
DNAH5	1767	broad.mit.edu	37	5	13824236	13824236	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr5:13824236G>A	uc003jfd.2	-							NM_001369	NP_001360
TRIO	7204	broad.mit.edu	37	5	14403473	14403473	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr5:14403473G>A	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
ADAMTS12	81792	broad.mit.edu	37	5	33637726	33637726	+	Missense_Mutation	SNP	G	T	T			2012-701:2012-1307-T	g.chr5:33637726G>T	uc003jia.1	-	12	2007	c.1844C>A	c.(1843-1845)CCC>CAC	p.P615H	ADAMTS12_uc010iuq.1_Missense_Mutation_p.P615H	NM_030955	NP_112217
PCDHAC2	56134	broad.mit.edu	37	5	140389296	140389296	+	Missense_Mutation	SNP	C	A	A			2012-701:2012-1307-T	g.chr5:140389296C>A	uc003lii.2	+	4	3038	c.2798C>A	c.(2797-2799)CCC>CAC	p.P933H	PCDHA1_uc003lha.2_Missense_Mutation_p.P612H|PCDHA1_uc003lhb.2_Missense_Mutation_p.P876H|PCDHA2_uc003lhd.2_Missense_Mutation_p.P874H|PCDHA3_uc003lhf.2_Missense_Mutation_p.P876H|PCDHA4_uc003lhi.2_Missense_Mutation_p.P873H|PCDHA4_uc003lhh.1_Missense_Mutation_p.P873H|PCDHA5_uc003lhk.1_Missense_Mutation_p.P862H|PCDHA5_uc003lhl.2_Missense_Mutation_p.P862H|PCDHA6_uc003lhn.2_Missense_Mutation_p.P612H|PCDHA6_uc003lho.2_Missense_Mutation_p.P876H|PCDHA7_uc003lhq.2_Missense_Mutation_p.P863H|PCDHA8_uc003lhs.2_Missense_Mutation_p.P876H|PCDHA9_uc003lhu.2_Missense_Mutation_p.P876H|PCDHA10_uc003lhw.2_Missense_Mutation_p.P611H|PCDHA10_uc003lhx.2_Missense_Mutation_p.P874H|PCDHA11_uc003lia.2_Missense_Mutation_p.P875H|PCDHA12_uc003lic.2_Missense_Mutation_p.P867H|PCDHA13_uc003lie.1_Missense_Mutation_p.P876H|PCDHA13_uc003lif.2_Missense_Mutation_p.P876H|PCDHAC1_uc003lih.2_Missense_Mutation_p.P889H	NM_018899	NP_061722
ROS1	6098	broad.mit.edu	37	6	117665419	117665419	+	Missense_Mutation	SNP	G	A	A	rs145528392		2012-701:2012-1307-T	g.chr6:117665419G>A	uc003pxp.1	-	27	4527	c.4328C>T	c.(4327-4329)GCG>GTG	p.A1443V	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
ROS1	6098	broad.mit.edu	37	6	117725581	117725581	+	Silent	SNP	G	A	A			2012-701:2012-1307-T	g.chr6:117725581G>A	uc003pxp.1	-	5	499	c.300C>T	c.(298-300)GAC>GAT	p.D100D	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
SYNE1	23345	broad.mit.edu	37	6	152443966	152443966	+	Intron	SNP	C	A	A			2012-701:2012-1307-T	g.chr6:152443966C>A	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152536093	152536093	+	Missense_Mutation	SNP	T	A	A			2012-701:2012-1307-T	g.chr6:152536093T>A	uc010kiw.2	-	122	22896	c.22294A>T	c.(22294-22296)AAT>TAT	p.N7432Y	SYNE1_uc010kiv.2_Missense_Mutation_p.N1956Y|SYNE1_uc003qos.3_Missense_Mutation_p.N1956Y|SYNE1_uc003qot.3_Missense_Mutation_p.N7361Y|SYNE1_uc003qou.3_Missense_Mutation_p.N7432Y|SYNE1_uc003qor.3_Missense_Mutation_p.N332Y	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152647820	152647820	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr6:152647820C>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kiz.2_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152746417	152746417	+	Intron	SNP	A	T	T			2012-701:2012-1307-T	g.chr6:152746417A>T	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
PRKAR1B	5575	broad.mit.edu	37	7	628243	628243	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr7:628243G>A	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
THSD7A	221981	broad.mit.edu	37	7	11485903	11485903	+	Missense_Mutation	SNP	A	C	C			2012-701:2012-1307-T	g.chr7:11485903A>C	uc003ssf.3	-	13	3101	c.2849T>G	c.(2848-2850)CTG>CGG	p.L950R		NM_015204	NP_056019
WBSCR17	64409	broad.mit.edu	37	7	70885988	70885988	+	Silent	SNP	C	A	A			2012-701:2012-1307-T	g.chr7:70885988C>A	uc003tvy.2	+	5	859	c.859C>A	c.(859-861)CGG>AGG	p.R287R	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924
PCLO	27445	broad.mit.edu	37	7	82545347	82545347	+	Silent	SNP	G	C	C			2012-701:2012-1307-T	g.chr7:82545347G>C	uc003uhx.2	-	7	12244	c.11955C>G	c.(11953-11955)CCC>CCG	p.P3985P	PCLO_uc003uhv.2_Silent_p.P3985P|PCLO_uc010lec.2_Silent_p.P950P	NM_033026	NP_149015
PCLO	27445	broad.mit.edu	37	7	82579333	82579333	+	Missense_Mutation	SNP	A	G	G			2012-701:2012-1307-T	g.chr7:82579333A>G	uc003uhx.2	-	6	10860	c.10571T>C	c.(10570-10572)ATA>ACA	p.I3524T	PCLO_uc003uhv.2_Missense_Mutation_p.I3524T|PCLO_uc010lec.2_Missense_Mutation_p.I489T	NM_033026	NP_149015
PCLO	27445	broad.mit.edu	37	7	82792281	82792281	+	5'Flank	SNP	T	C	C			2012-701:2012-1307-T	g.chr7:82792281T>C	uc003uhx.2	-						PCLO_uc003uhv.2_5'Flank	NM_033026	NP_149015
PIK3CG	5294	broad.mit.edu	37	7	106508882	106508882	+	Nonsense_Mutation	SNP	G	A	A			2012-701:2012-1307-T	g.chr7:106508882G>A	uc003vdv.3	+	2	961	c.876G>A	c.(874-876)TGG>TGA	p.W292*	PIK3CG_uc003vdu.2_Nonsense_Mutation_p.W292*|PIK3CG_uc003vdw.2_Nonsense_Mutation_p.W292*	NM_002649	NP_002640
GRM8	2918	broad.mit.edu	37	7	126410081	126410081	+	Missense_Mutation	SNP	C	G	G			2012-701:2012-1307-T	g.chr7:126410081C>G	uc003vlr.2	-	6	1506	c.1195G>C	c.(1195-1197)GAA>CAA	p.E399Q	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.E399Q|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.E120Q	NM_000845	NP_000836
CNTNAP2	26047	broad.mit.edu	37	7	146818010	146818011	+	Intron	DNP	TG	CT	CT			2012-701:2012-1307-T	g.chr7:146818010_146818011TG>CT	uc003weu.1	+							NM_014141	NP_054860
CNTNAP2	26047	broad.mit.edu	37	7	147674892	147674892	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr7:147674892C>T	uc003weu.1	+							NM_014141	NP_054860
PTPRN2	5799	broad.mit.edu	37	7	157526605	157526605	+	Intron	SNP	T	C	C			2012-701:2012-1307-T	g.chr7:157526605T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157941492	157941492	+	Intron	SNP	G	A	A			2012-701:2012-1307-T	g.chr7:157941492G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
NKAIN3	286183	broad.mit.edu	37	8	63769269	63769269	+	Intron	SNP	T	A	A			2012-701:2012-1307-T	g.chr8:63769269T>A	uc010lyq.1	+							NM_173688	NP_775959
SLCO5A1	81796	broad.mit.edu	37	8	70744483	70744483	+	Silent	SNP	C	T	T			2012-701:2012-1307-T	g.chr8:70744483C>T	uc003xyl.2	-	2	1133	c.426G>A	c.(424-426)GCG>GCA	p.A142A	SLCO5A1_uc010lzb.2_Silent_p.A142A|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Silent_p.A142A|SLCO5A1_uc010lzc.2_Silent_p.A142A	NM_030958	NP_112220
SLCO5A1	81796	broad.mit.edu	37	8	70747134	70747134	+	5'UTR	SNP	A	G	G			2012-701:2012-1307-T	g.chr8:70747134A>G	uc003xyl.2	-	1					SLCO5A1_uc010lzb.2_5'Flank|SLCO5A1_uc011lfa.1_5'Flank|SLCO5A1_uc003xyk.2_5'Flank|SLCO5A1_uc010lzc.2_5'Flank	NM_030958	NP_112220
CSMD3	114788	broad.mit.edu	37	8	113267546	113267546	+	Nonsense_Mutation	SNP	C	A	A			2012-701:2012-1307-T	g.chr8:113267546C>A	uc003ynu.2	-	62	10132	c.9973G>T	c.(9973-9975)GGA>TGA	p.G3325*	CSMD3_uc003yns.2_Nonsense_Mutation_p.G2527*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.G3285*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.G3156*	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113563248	113563248	+	Intron	SNP	T	C	C			2012-701:2012-1307-T	g.chr8:113563248T>C	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113662631	113662631	+	Intron	SNP	G	T	T			2012-701:2012-1307-T	g.chr8:113662631G>T	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
ENPP2	5168	broad.mit.edu	37	8	120569830	120569830	+	Missense_Mutation	SNP	C	G	G			2012-701:2012-1307-T	g.chr8:120569830C>G	uc003yot.1	-	25	2609	c.2523G>C	c.(2521-2523)AAG>AAC	p.K841N	ENPP2_uc011lic.1_Missense_Mutation_p.K379N|ENPP2_uc003yor.1_Missense_Mutation_p.K476N|ENPP2_uc003yos.1_Missense_Mutation_p.K893N|ENPP2_uc010mdd.1_Missense_Mutation_p.K866N	NM_001040092	NP_001035181
FAM135B	51059	broad.mit.edu	37	8	139155451	139155451	+	Intron	SNP	T	A	A			2012-701:2012-1307-T	g.chr8:139155451T>A	uc003yuy.2	-						FAM135B_uc003yux.2_Intron|FAM135B_uc003yuz.2_Intron|FAM135B_uc003yva.2_Intron|FAM135B_uc003yvb.2_Intron	NM_015912	NP_056996
FAM135B	51059	broad.mit.edu	37	8	139164103	139164103	+	Missense_Mutation	SNP	C	A	A			2012-701:2012-1307-T	g.chr8:139164103C>A	uc003yuy.2	-	13	2786	c.2615G>T	c.(2614-2616)GGT>GTT	p.G872V	FAM135B_uc003yux.2_Missense_Mutation_p.G773V|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.G434V|FAM135B_uc003yvb.2_Missense_Mutation_p.G434V	NM_015912	NP_056996
FAM135B	51059	broad.mit.edu	37	8	139164940	139164940	+	Missense_Mutation	SNP	C	A	A			2012-701:2012-1307-T	g.chr8:139164940C>A	uc003yuy.2	-	13	1949	c.1778G>T	c.(1777-1779)AGC>ATC	p.S593I	FAM135B_uc003yux.2_Missense_Mutation_p.S494I|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.S155I|FAM135B_uc003yvb.2_Missense_Mutation_p.S155I	NM_015912	NP_056996
COL22A1	169044	broad.mit.edu	37	8	139609092	139609092	+	Intron	SNP	A	T	T			2012-701:2012-1307-T	g.chr8:139609092A>T	uc003yvd.2	-						COL22A1_uc011ljo.1_Intron	NM_152888	NP_690848
COL22A1	169044	broad.mit.edu	37	8	139691878	139691878	+	Silent	SNP	C	G	G			2012-701:2012-1307-T	g.chr8:139691878C>G	uc003yvd.2	-	40	3501	c.3054G>C	c.(3052-3054)CTG>CTC	p.L1018L	COL22A1_uc011ljo.1_Intron	NM_152888	NP_690848
OBP2A	29991	broad.mit.edu	37	9	138440898	138440898	+	Intron	SNP	C	T	T			2012-701:2012-1307-T	g.chr9:138440898C>T	uc004cgb.2	+						OBP2A_uc004cgc.2_Intron|OBP2A_uc010nau.2_Intron|OBP2A_uc010nav.2_Intron	NM_014582	NP_055397
HEPH	9843	broad.mit.edu	37	X	65390505	65390505	+	Silent	SNP	C	A	A			2012-701:2012-1307-T	g.chrX:65390505C>A	uc011moz.1	+	2	162	c.102C>A	c.(100-102)GGC>GGA	p.G34G	HEPH_uc004dwn.2_Silent_p.G34G|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Silent_p.G34G|HEPH_uc011mpa.1_Silent_p.G34G	NM_138737	NP_620074
GPR174	84636	broad.mit.edu	37	X	78426104	78426104	+	5'Flank	SNP	C	A	A			2012-701:2012-1307-T	g.chrX:78426104C>A	uc004edg.1	+							NM_032553	NP_115942
NRK	203447	broad.mit.edu	37	X	105183969	105183969	+	Silent	SNP	A	T	T			2012-701:2012-1307-T	g.chrX:105183969A>T	uc004emd.2	+	23	4206	c.3903A>T	c.(3901-3903)ACA>ACT	p.T1301T	NRK_uc010npc.1_Silent_p.T969T	NM_198465	NP_940867
MTOR	2475	broad.mit.edu	37	1	11292666	11292666	+	Intron	SNP	T	A	A	rs10864495	by1000genomes	2012-702:2012-1308-T	g.chr1:11292666T>A	uc001asd.2	-							NM_004958	NP_004949
NBPF1	55672	broad.mit.edu	37	1	16891913	16891913	+	Intron	SNP	C	T	T			2012-702:2012-1308-T	g.chr1:16891913C>T	uc009vos.1	-						uc001ayw.2_5'Flank	NM_017940	NP_060410
NOTCH2	4853	broad.mit.edu	37	1	120505996	120505996	+	Intron	SNP	G	C	C	rs10923929	by1000genomes	2012-702:2012-1308-T	g.chr1:120505996G>C	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
FAM5B	57795	broad.mit.edu	37	1	177140316	177140316	+	5'Flank	SNP	T	G	G			2012-702:2012-1308-T	g.chr1:177140316T>G	uc001glf.2	+							NM_021165	NP_066988
TUBGCP2	10844	broad.mit.edu	37	10	135094321	135094321	+	Intron	SNP	A	T	T			2012-702:2012-1308-T	g.chr10:135094321A>T	uc001lmg.1	-						TUBGCP2_uc001lmf.1_Intron|TUBGCP2_uc010qvc.1_Intron|TUBGCP2_uc009ybk.1_Intron|TUBGCP2_uc010qvd.1_Intron|TUBGCP2_uc001lmh.1_Intron	NM_006659	NP_006650
ATM	472	broad.mit.edu	37	11	108204544	108204544	+	Intron	SNP	A	T	T			2012-702:2012-1308-T	g.chr11:108204544A>T	uc001pkb.1	+						ATM_uc009yxr.1_Intron|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Intron|ATM_uc001pkg.1_Intron	NM_000051	NP_000042
F7	2155	broad.mit.edu	37	13	113763063	113763063	+	Intron	SNP	T	C	C			2012-702:2012-1308-T	g.chr13:113763063T>C	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113763066	113763066	+	Intron	SNP	A	G	G			2012-702:2012-1308-T	g.chr13:113763066A>G	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
TC2N	123036	broad.mit.edu	37	14	92333611	92333611	+	5'UTR	SNP	T	C	C	rs3825687	by1000genomes	2012-702:2012-1308-T	g.chr14:92333611T>C	uc001xzv.3	-	1						NM_001128596	NP_001122068
TLN2	83660	broad.mit.edu	37	15	63030295	63030295	+	Intron	SNP	T	G	G			2012-702:2012-1308-T	g.chr15:63030295T>G	uc002alb.3	+						TLN2_uc002alc.3_5'Flank	NM_015059	NP_055874
CYLD	1540	broad.mit.edu	37	16	50776453	50776453	+	Intron	SNP	T	C	C			2012-702:2012-1308-T	g.chr16:50776453T>C	uc002egp.1	+						CYLD_uc002egn.1_Intron|CYLD_uc002ego.2_Intron|CYLD_uc010cbs.1_Intron|CYLD_uc002egq.1_Intron|CYLD_uc002egr.1_Intron	NM_015247	NP_056062
MYH2	4620	broad.mit.edu	37	17	10442900	10442900	+	Intron	SNP	A	T	T			2012-702:2012-1308-T	g.chr17:10442900A>T	uc010coi.2	-						uc002gml.1_Intron|MYH2_uc002gmp.3_Intron|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582
RAD51C	5889	broad.mit.edu	37	17	56783255	56783255	+	Intron	SNP	C	T	T	rs2567901	by1000genomes	2012-702:2012-1308-T	g.chr17:56783255C>T	uc002iwu.2	+						RAD51C_uc010woa.1_Intron|RAD51C_uc010ddc.2_Intron|RAD51C_uc002iwv.2_RNA|RAD51C_uc002iww.2_Intron	NM_058216	NP_478123
SLC16A3	9123	broad.mit.edu	37	17	80218284	80218284	+	Intron	SNP	G	C	C			2012-702:2012-1308-T	g.chr17:80218284G>C	uc002kee.2	+						CSNK1D_uc002kef.2_Intron|CSNK1D_uc002kei.2_Intron|CSNK1D_uc002kej.2_Intron|CSNK1D_uc010wvj.1_Intron	NM_004207	NP_004198
FOXK2	3607	broad.mit.edu	37	17	80559047	80559047	+	Intron	SNP	A	G	G			2012-702:2012-1308-T	g.chr17:80559047A>G	uc002kfn.2	+						FOXK2_uc010diu.2_Intron|FOXK2_uc002kfo.2_Intron|FOXK2_uc002kfp.2_Intron	NM_004514	NP_004505
NOTCH3	4854	broad.mit.edu	37	19	15290930	15290930	+	Nonsense_Mutation	SNP	G	A	A			2012-702:2012-1308-T	g.chr19:15290930G>A	uc002nan.2	-	20	3356	c.3280C>T	c.(3280-3282)CAG>TAG	p.Q1094*	NOTCH3_uc002nao.1_Nonsense_Mutation_p.Q1042*	NM_000435	NP_000426
SFRS14	10147	broad.mit.edu	37	19	19120915	19120915	+	Missense_Mutation	SNP	G	A	A			2012-702:2012-1308-T	g.chr19:19120915G>A	uc002nkx.2	-	5	2233	c.2087C>T	c.(2086-2088)GCG>GTG	p.A696V	SFRS14_uc002nkz.1_Missense_Mutation_p.A710V|SFRS14_uc002nla.1_Missense_Mutation_p.A696V|SFRS14_uc002nlb.2_Missense_Mutation_p.A696V|SFRS14_uc010xqk.1_Missense_Mutation_p.A465V	NM_014884	NP_055699
BCL11A	53335	broad.mit.edu	37	2	60694386	60694386	+	Intron	SNP	A	G	G	rs62142607		2012-702:2012-1308-T	g.chr2:60694386A>G	uc002sae.1	-						BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Intron|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044
TFCP2L1	29842	broad.mit.edu	37	2	121983503	121983503	+	Intron	SNP	C	T	T			2012-702:2012-1308-T	g.chr2:121983503C>T	uc002tmx.2	-						TFCP2L1_uc010flr.2_Intron|TFCP2L1_uc010flq.2_Intron	NM_014553	NP_055368
ARFGEF2	10564	broad.mit.edu	37	20	47601835	47601835	+	Intron	SNP	A	G	G			2012-702:2012-1308-T	g.chr20:47601835A>G	uc002xtx.3	+						ARFGEF2_uc010zyf.1_Intron	NM_006420	NP_006411
TUBA8	51807	broad.mit.edu	37	22	18584433	18584433	+	Intron	SNP	T	C	C	rs3827281	by1000genomes	2012-702:2012-1308-T	g.chr22:18584433T>C	uc002znr.2	+							NM_018943	NP_061816
MPPED1	758	broad.mit.edu	37	22	43896265	43896265	+	Intron	SNP	A	G	G			2012-702:2012-1308-T	g.chr22:43896265A>G	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
FAM19A5	25817	broad.mit.edu	37	22	49062364	49062364	+	Intron	SNP	A	C	C			2012-702:2012-1308-T	g.chr22:49062364A>C	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
MUC4	4585	broad.mit.edu	37	3	195498049	195498049	+	Intron	SNP	T	C	C			2012-702:2012-1308-T	g.chr3:195498049T>C	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
PCGF3	10336	broad.mit.edu	37	4	701687	701687	+	Intron	SNP	C	T	T	rs138704939	by1000genomes	2012-702:2012-1308-T	g.chr4:701687C>T	uc011bva.1	+						PCGF3_uc003gbc.1_Intron|PCGF3_uc003gbd.1_Intron|PCGF3_uc003gbe.2_Intron|PCGF3_uc010ibh.2_Intron	NM_006315	NP_006306
INPP4B	8821	broad.mit.edu	37	4	143044623	143044623	+	Intron	SNP	T	C	C			2012-702:2012-1308-T	g.chr4:143044623T>C	uc003iix.3	-						INPP4B_uc003iiw.3_Intron|INPP4B_uc011chm.1_Intron|INPP4B_uc011chn.1_Intron|INPP4B_uc011cho.1_Intron|INPP4B_uc011chp.1_Intron	NM_003866	NP_003857
FAT1	2195	broad.mit.edu	37	4	187521037	187521037	+	Intron	SNP	C	A	A	rs10009030	by1000genomes	2012-702:2012-1308-T	g.chr4:187521037C>A	uc003izf.2	-						FAT1_uc003ize.2_5'Flank	NM_005245	NP_005236
HLA-G	3135	broad.mit.edu	37	6	29854132	29854132	+	Intron	SNP	T	C	C	rs113600363	by1000genomes	2012-702:2012-1308-T	g.chr6:29854132T>C	uc011dmb.1	+						HLA-H_uc003nod.2_5'Flank|HLA-H_uc010jro.2_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29854135	29854135	+	Intron	SNP	T	C	C	rs112274463	by1000genomes	2012-702:2012-1308-T	g.chr6:29854135T>C	uc011dmb.1	+						HLA-H_uc003nod.2_5'Flank|HLA-H_uc010jro.2_5'Flank	NM_002127	NP_002118
HLA-B	3106	broad.mit.edu	37	6	31321807	31321807	+	3'UTR	SNP	G	A	A	rs113568626		2012-702:2012-1308-T	g.chr6:31321807G>A	uc003nth.2	-	8					HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_3'UTR	NM_005514	NP_005505
HLA-B	3106	broad.mit.edu	37	6	31322133	31322133	+	Intron	SNP	A	G	G	rs3819306	by1000genomes	2012-702:2012-1308-T	g.chr6:31322133A>G	uc003nth.2	-						HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Intron	NM_005514	NP_005505
ADAP1	11033	broad.mit.edu	37	7	945194	945194	+	Intron	SNP	A	G	G			2012-702:2012-1308-T	g.chr7:945194A>G	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
SDK1	221935	broad.mit.edu	37	7	4219881	4219882	+	Intron	DNP	TG	CA	CA			2012-702:2012-1308-T	g.chr7:4219881_4219882TG>CA	uc003smx.2	+						SDK1_uc010kso.2_Intron|SDK1_uc003smy.2_Intron	NM_152744	NP_689957
ETV1	2115	broad.mit.edu	37	7	14029772	14029772	+	5'Flank	SNP	G	C	C	rs2073532	by1000genomes	2012-702:2012-1308-T	g.chr7:14029772G>C	uc011jxq.1	-						ETV1_uc003ssw.3_5'Flank|ETV1_uc003ssx.2_Intron|ETV1_uc011jxr.1_Intron|ETV1_uc011jxs.1_Intron	NM_004956	NP_004947
EGFR	1956	broad.mit.edu	37	7	55235265	55235265	+	Intron	SNP	G	A	A			2012-702:2012-1308-T	g.chr7:55235265G>A	uc003tqk.2	+						EGFR_uc003tqi.2_Intron|EGFR_uc003tqj.2_Intron|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Intron|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
ZNF804B	219578	broad.mit.edu	37	7	88965215	88965215	+	Missense_Mutation	SNP	C	A	A			2012-702:2012-1308-T	g.chr7:88965215C>A	uc011khi.1	+	4	3457	c.2919C>A	c.(2917-2919)AAC>AAA	p.N973K		NM_181646	NP_857597
PTPRN2	5799	broad.mit.edu	37	7	157941128	157941128	+	Intron	SNP	A	C	C			2012-702:2012-1308-T	g.chr7:157941128A>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158141017	158141017	+	Intron	SNP	C	A	A	rs112271746		2012-702:2012-1308-T	g.chr7:158141017C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTK2B	2185	broad.mit.edu	37	8	27290869	27290869	+	Intron	SNP	T	G	G			2012-702:2012-1308-T	g.chr8:27290869T>G	uc003xfn.1	+						PTK2B_uc003xfo.1_Intron|PTK2B_uc003xfp.1_Intron|PTK2B_uc003xfq.1_Intron|PTK2B_uc010luq.1_Intron|PTK2B_uc003xfr.1_Intron	NM_173174	NP_775266
CSMD3	114788	broad.mit.edu	37	8	113519035	113519035	+	Missense_Mutation	SNP	C	T	T			2012-702:2012-1308-T	g.chr8:113519035C>T	uc003ynu.2	-	29	4939	c.4780G>A	c.(4780-4782)GGA>AGA	p.G1594R	CSMD3_uc003yns.2_Missense_Mutation_p.G866R|CSMD3_uc003ynt.2_Missense_Mutation_p.G1554R|CSMD3_uc011lhx.1_Missense_Mutation_p.G1490R	NM_198123	NP_937756
NBPF1	55672	broad.mit.edu	37	1	16892060	16892060	+	Intron	SNP	G	C	C	rs140609389	by1000genomes	2012-703:2012-1309-T	g.chr1:16892060G>C	uc009vos.1	-						uc001ayw.2_5'Flank	NM_017940	NP_060410
ARID1A	8289	broad.mit.edu	37	1	27107035	27107035	+	Missense_Mutation	SNP	C	T	T			2012-703:2012-1309-T	g.chr1:27107035C>T	uc001bmv.1	+	20	7019	c.6646C>T	c.(6646-6648)CTC>TTC	p.L2216F	ARID1A_uc001bmu.1_Missense_Mutation_p.L1999F|ARID1A_uc001bmx.1_Missense_Mutation_p.L1062F|ARID1A_uc009vsm.1_Missense_Mutation_p.L544F|ARID1A_uc009vsn.1_Missense_Mutation_p.L458F	NM_006015	NP_006006
PTPRF	5792	broad.mit.edu	37	1	44071018	44071018	+	Missense_Mutation	SNP	A	C	C			2012-703:2012-1309-T	g.chr1:44071018A>C	uc001cjr.2	+	18	3633	c.3293A>C	c.(3292-3294)GAC>GCC	p.D1098A	PTPRF_uc001cjs.2_Missense_Mutation_p.D1089A|PTPRF_uc001cju.2_Missense_Mutation_p.D476A|PTPRF_uc009vwt.2_Missense_Mutation_p.D658A|PTPRF_uc001cjv.2_Missense_Mutation_p.D558A|PTPRF_uc001cjw.2_Missense_Mutation_p.D324A	NM_002840	NP_002831
LOC200030	200030	broad.mit.edu	37	1	148011106	148011106	+	Intron	SNP	A	G	G			2012-703:2012-1309-T	g.chr1:148011106A>G	uc001eqf.2	-						LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Intron|NBPF14_uc001eqq.2_Intron|NBPF14_uc010pad.1_Intron|NBPF14_uc001eqs.1_Intron	NM_017940	NP_060410
USH2A	7399	broad.mit.edu	37	1	216348737	216348737	+	Missense_Mutation	SNP	C	A	A			2012-703:2012-1309-T	g.chr1:216348737C>A	uc001hku.1	-	21	4871	c.4484G>T	c.(4483-4485)GGA>GTA	p.G1495V	USH2A_uc001hkv.2_Missense_Mutation_p.G1495V	NM_206933	NP_996816
GPR123	84435	broad.mit.edu	37	10	134893330	134893330	+	Intron	SNP	G	T	T			2012-703:2012-1309-T	g.chr10:134893330G>T	uc001llw.2	+								
NTM	50863	broad.mit.edu	37	11	131550489	131550489	+	Intron	SNP	G	C	C			2012-703:2012-1309-T	g.chr11:131550489G>C	uc010sci.1	+						NTM_uc001qgm.2_Intron|NTM_uc010sch.1_Intron	NM_001144058	NP_001137530
LRRK2	120892	broad.mit.edu	37	12	40707755	40707755	+	Intron	SNP	G	T	T			2012-703:2012-1309-T	g.chr12:40707755G>T	uc001rmg.3	+						LRRK2_uc009zjw.2_Intron|LRRK2_uc001rmi.2_Intron	NM_198578	NP_940980
ERBB3	2065	broad.mit.edu	37	12	56488961	56488961	+	Intron	SNP	C	A	A			2012-703:2012-1309-T	g.chr12:56488961C>A	uc001sjh.2	+						ERBB3_uc009zoj.2_Intron|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Intron|ERBB3_uc009zok.2_Intron|ERBB3_uc001sjk.2_5'Flank	NM_001982	NP_001973
GALNT9	50614	broad.mit.edu	37	12	132881032	132881032	+	Intron	SNP	C	G	G			2012-703:2012-1309-T	g.chr12:132881032C>G	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
ZDHHC20	253832	broad.mit.edu	37	13	21951632	21951633	+	Intron	DNP	GA	TG	TG			2012-703:2012-1309-T	g.chr13:21951632_21951633GA>TG	uc001uob.2	-						ZDHHC20_uc001uod.2_Intron|ZDHHC20_uc001uoc.2_Intron|ZDHHC20_uc001uoe.2_Intron|ZDHHC20_uc010tcs.1_Intron|uc001uoa.1_5'Flank	NM_153251	NP_694983
COL4A2	1284	broad.mit.edu	37	13	111133715	111133715	+	Intron	SNP	T	A	A			2012-703:2012-1309-T	g.chr13:111133715T>A	uc001vqx.2	+							NM_001846	NP_001837
DICER1	23405	broad.mit.edu	37	14	95566172	95566172	+	Missense_Mutation	SNP	C	A	A			2012-703:2012-1309-T	g.chr14:95566172C>A	uc001ydw.2	-	23	4333	c.4151G>T	c.(4150-4152)GGT>GTT	p.G1384V	DICER1_uc010avh.1_Missense_Mutation_p.G282V|DICER1_uc001ydv.2_Missense_Mutation_p.G1374V|DICER1_uc001ydx.2_Missense_Mutation_p.G1384V|DICER1_uc001ydy.1_Missense_Mutation_p.G236V	NM_030621	NP_085124
INO80	54617	broad.mit.edu	37	15	41324316	41324316	+	Intron	SNP	A	C	C			2012-703:2012-1309-T	g.chr15:41324316A>C	uc001zni.2	-						INO80_uc010ucu.1_Intron	NM_017553	NP_060023
TLN2	83660	broad.mit.edu	37	15	63030309	63030309	+	Intron	SNP	T	G	G			2012-703:2012-1309-T	g.chr15:63030309T>G	uc002alb.3	+						TLN2_uc002alc.3_5'Flank	NM_015059	NP_055874
LMF1	64788	broad.mit.edu	37	16	908464	908464	+	Intron	SNP	C	T	T			2012-703:2012-1309-T	g.chr16:908464C>T	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
CDH11	1009	broad.mit.edu	37	16	65032726	65032726	+	Missense_Mutation	SNP	T	C	C			2012-703:2012-1309-T	g.chr16:65032726T>C	uc002eoi.2	-	4	696	c.262A>G	c.(262-264)ATT>GTT	p.I88V	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.I88V|CDH11_uc010vin.1_5'UTR|CDH11_uc010vio.1_Missense_Mutation_p.I88V	NM_001797	NP_001788
TP53	7157	broad.mit.edu	37	17	7579415	7579415	+	Nonsense_Mutation	SNP	C	T	T			2012-703:2012-1309-T	g.chr17:7579415C>T	uc002gim.2	-	4	466	c.272G>A	c.(271-273)TGG>TAG	p.W91*	TP53_uc002gig.1_Nonsense_Mutation_p.W91*|TP53_uc002gih.2_Nonsense_Mutation_p.W91*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Nonsense_Mutation_p.W91*|TP53_uc010cni.1_Nonsense_Mutation_p.W91*|TP53_uc002gij.2_Nonsense_Mutation_p.W91*|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Nonsense_Mutation_p.W52*|TP53_uc010cnk.1_Nonsense_Mutation_p.W106*	NM_001126112	NP_001119584
DSEL	92126	broad.mit.edu	37	18	65181054	65181054	+	Silent	SNP	T	G	G			2012-703:2012-1309-T	g.chr18:65181054T>G	uc002lke.1	-	2	2046	c.822A>C	c.(820-822)CTA>CTC	p.L274L		NM_032160	NP_115536
ATP9B	374868	broad.mit.edu	37	18	77117948	77117948	+	Intron	SNP	T	G	G			2012-703:2012-1309-T	g.chr18:77117948T>G	uc002lmx.2	+						ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmz.1_Intron|ATP9B_uc002lna.2_Intron|ATP9B_uc002lnb.1_Intron|ATP9B_uc010drb.2_Intron	NM_198531	NP_940933
DOT1L	84444	broad.mit.edu	37	19	2200810	2200810	+	Intron	SNP	C	T	T			2012-703:2012-1309-T	g.chr19:2200810C>T	uc002lvb.3	+							NM_032482	NP_115871
ZNF77	58492	broad.mit.edu	37	19	2939233	2939233	+	Intron	SNP	G	A	A	rs113148401	by1000genomes	2012-703:2012-1309-T	g.chr19:2939233G>A	uc002lws.3	-							NM_021217	NP_067040
COL5A3	50509	broad.mit.edu	37	19	10080900	10080900	+	Intron	SNP	G	T	T			2012-703:2012-1309-T	g.chr19:10080900G>T	uc002mmq.1	-							NM_015719	NP_056534
AXL	558	broad.mit.edu	37	19	41758691	41758691	+	Intron	SNP	T	G	G			2012-703:2012-1309-T	g.chr19:41758691T>G	uc010ehj.2	+						CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Intron	NM_021913	NP_068713
PPP1R12C	54776	broad.mit.edu	37	19	55621724	55621724	+	Intron	SNP	G	A	A			2012-703:2012-1309-T	g.chr19:55621724G>A	uc002qix.2	-						PPP1R12C_uc010yfs.1_Intron|PPP1R12C_uc002qiy.2_Intron	NM_017607	NP_060077
ZSCAN5A	79149	broad.mit.edu	37	19	56747952	56747952	+	Intron	SNP	C	T	T			2012-703:2012-1309-T	g.chr19:56747952C>T	uc002qmr.2	-						ZSCAN5A_uc010ygi.1_Intron	NM_024303	NP_077279
MYT1L	23040	broad.mit.edu	37	2	2240341	2240341	+	Intron	SNP	T	C	C			2012-703:2012-1309-T	g.chr2:2240341T>C	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
APOB	338	broad.mit.edu	37	2	21230696	21230696	+	Missense_Mutation	SNP	G	T	T			2012-703:2012-1309-T	g.chr2:21230696G>T	uc002red.2	-	26	9172	c.9044C>A	c.(9043-9045)GCA>GAA	p.A3015E		NM_000384	NP_000375
LRP1B	53353	broad.mit.edu	37	2	141625162	141625162	+	Missense_Mutation	SNP	G	T	T			2012-703:2012-1309-T	g.chr2:141625162G>T	uc002tvj.1	-	27	5548	c.4576C>A	c.(4576-4578)CAG>AAG	p.Q1526K	LRP1B_uc010fnl.1_Missense_Mutation_p.Q708K	NM_018557	NP_061027
MAP2	4133	broad.mit.edu	37	2	210558621	210558621	+	Missense_Mutation	SNP	C	A	A			2012-703:2012-1309-T	g.chr2:210558621C>A	uc002vde.1	+	7	1975	c.1727C>A	c.(1726-1728)TCT>TAT	p.S576Y	MAP2_uc002vdc.1_Missense_Mutation_p.S576Y|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.S572Y	NM_002374	NP_002365
COL6A3	1293	broad.mit.edu	37	2	238285917	238285917	+	Silent	SNP	A	G	G			2012-703:2012-1309-T	g.chr2:238285917A>G	uc002vwl.2	-	7	2853	c.2568T>C	c.(2566-2568)CGT>CGC	p.R856R	COL6A3_uc002vwo.2_Silent_p.R650R|COL6A3_uc010znj.1_Silent_p.R249R|COL6A3_uc002vwq.2_Silent_p.R650R|COL6A3_uc002vwr.2_Silent_p.R449R|COL6A3_uc010znk.1_Silent_p.R656R	NM_004369	NP_004360
EPHA3	2042	broad.mit.edu	37	3	89259104	89259104	+	Missense_Mutation	SNP	G	A	A			2012-703:2012-1309-T	g.chr3:89259104G>A	uc003dqy.2	+	3	473	c.248G>A	c.(247-249)AGA>AAA	p.R83K	EPHA3_uc003dqx.1_Missense_Mutation_p.R83K|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224
CHCHD6	84303	broad.mit.edu	37	3	126582429	126582429	+	Intron	SNP	T	C	C			2012-703:2012-1309-T	g.chr3:126582429T>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
PPP2R2C	5522	broad.mit.edu	37	4	6513564	6513564	+	Intron	SNP	A	G	G			2012-703:2012-1309-T	g.chr4:6513564A>G	uc011bwd.1	-						PPP2R2C_uc011bwe.1_Intron	NM_181876	NP_870991
FBXW7	55294	broad.mit.edu	37	4	153247367	153247367	+	Missense_Mutation	SNP	G	C	C			2012-703:2012-1309-T	g.chr4:153247367G>C	uc003ims.2	-	10	1584	c.1435C>G	c.(1435-1437)CGA>GGA	p.R479G	FBXW7_uc011cii.1_Missense_Mutation_p.R479G|FBXW7_uc003imt.2_Missense_Mutation_p.R479G|FBXW7_uc011cih.1_Missense_Mutation_p.R303G|FBXW7_uc003imq.2_Missense_Mutation_p.R399G|FBXW7_uc003imr.2_Missense_Mutation_p.R361G	NM_033632	NP_361014
AHRR	57491	broad.mit.edu	37	5	397526	397526	+	Intron	SNP	C	A	A			2012-703:2012-1309-T	g.chr5:397526C>A	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
DNAH5	1767	broad.mit.edu	37	5	13885036	13885036	+	Intron	SNP	C	G	G			2012-703:2012-1309-T	g.chr5:13885036C>G	uc003jfd.2	-							NM_001369	NP_001360
NSD1	64324	broad.mit.edu	37	5	176707836	176707836	+	Splice_Site	SNP	G	T	T			2012-703:2012-1309-T	g.chr5:176707836G>T	uc003mfr.3	+	18	6030	c.5892_splice	c.e18+1	p.K1964_splice	NSD1_uc003mft.3_Splice_Site_p.K1695_splice|NSD1_uc011dfx.1_Splice_Site_p.K1612_splice	NM_022455	NP_071900
FAM153C	653316	broad.mit.edu	37	5	177475169	177475169	+	Intron	SNP	G	A	A			2012-703:2012-1309-T	g.chr5:177475169G>A	uc011dge.1	+							NM_001079527	NP_001072995
RPP40	10799	broad.mit.edu	37	6	5001146	5001146	+	Intron	SNP	A	T	T	rs113382164		2012-703:2012-1309-T	g.chr6:5001146A>T	uc003mwl.2	-						uc003mwn.1_5'Flank|RPP40_uc003mwm.2_Intron	NM_006638	NP_006629
GRM4	2914	broad.mit.edu	37	6	33989820	33989820	+	3'UTR	SNP	T	C	C			2012-703:2012-1309-T	g.chr6:33989820T>C	uc003oir.3	-	10					GRM4_uc011dsn.1_3'UTR|GRM4_uc010jvh.2_3'UTR|GRM4_uc010jvi.2_3'UTR|GRM4_uc003oio.2_3'UTR|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_3'UTR|GRM4_uc003oiq.2_3'UTR|GRM4_uc011dsm.1_3'UTR	NM_000841	NP_000832
SYNE1	23345	broad.mit.edu	37	6	152721029	152721029	+	Intron	SNP	T	C	C	rs214951	by1000genomes	2012-703:2012-1309-T	g.chr6:152721029T>C	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
PARK2	5071	broad.mit.edu	37	6	162206972	162206972	+	Intron	SNP	T	C	C			2012-703:2012-1309-T	g.chr6:162206972T>C	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron|PARK2_uc011egf.1_Intron	NM_004562	NP_004553
SMOC2	64094	broad.mit.edu	37	6	169014436	169014436	+	Intron	SNP	C	T	T	rs149703584	by1000genomes	2012-703:2012-1309-T	g.chr6:169014436C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169060443	169060443	+	Intron	SNP	T	G	G	rs112030509	by1000genomes	2012-703:2012-1309-T	g.chr6:169060443T>G	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_Intron	NM_022138	NP_071421
PRKAR1B	5575	broad.mit.edu	37	7	594314	594314	+	Intron	SNP	A	G	G	rs34095446		2012-703:2012-1309-T	g.chr7:594314A>G	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron	NM_002735	NP_002726
EIF2AK1	27102	broad.mit.edu	37	7	6098972	6098972	+	5'Flank	SNP	T	G	G			2012-703:2012-1309-T	g.chr7:6098972T>G	uc003spp.2	-						EIF2AK1_uc003spq.2_5'Flank|EIF2AK1_uc011jwm.1_5'Flank	NM_014413	NP_055228
OGDH	4967	broad.mit.edu	37	7	44747386	44747386	+	Intron	SNP	A	G	G			2012-703:2012-1309-T	g.chr7:44747386A>G	uc003tln.2	+						OGDH_uc011kbx.1_Intron|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Intron|OGDH_uc011kbz.1_Intron	NM_002541	NP_002532
PIK3CG	5294	broad.mit.edu	37	7	106510003	106510003	+	Splice_Site	SNP	T	G	G			2012-703:2012-1309-T	g.chr7:106510003T>G	uc003vdv.3	+	2	2080	c.1995_splice	c.e2+2	p.Q665_splice	PIK3CG_uc003vdu.2_Splice_Site_p.Q665_splice|PIK3CG_uc003vdw.2_Splice_Site_p.Q665_splice	NM_002649	NP_002640
GRM8	2918	broad.mit.edu	37	7	126173235	126173235	+	Missense_Mutation	SNP	T	A	A			2012-703:2012-1309-T	g.chr7:126173235T>A	uc003vlr.2	-	8	2512	c.2201A>T	c.(2200-2202)GAG>GTG	p.E734V	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.E734V|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836
PTPRN2	5799	broad.mit.edu	37	7	157344341	157344341	+	Intron	SNP	C	A	A			2012-703:2012-1309-T	g.chr7:157344341C>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|PTPRN2_uc003wnn.2_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157392609	157392609	+	Intron	SNP	G	C	C			2012-703:2012-1309-T	g.chr7:157392609G>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTK2B	2185	broad.mit.edu	37	8	27290869	27290869	+	Intron	SNP	T	G	G			2012-703:2012-1309-T	g.chr8:27290869T>G	uc003xfn.1	+						PTK2B_uc003xfo.1_Intron|PTK2B_uc003xfp.1_Intron|PTK2B_uc003xfq.1_Intron|PTK2B_uc010luq.1_Intron|PTK2B_uc003xfr.1_Intron	NM_173174	NP_775266
UNC5D	137970	broad.mit.edu	37	8	35624406	35624406	+	Intron	SNP	C	T	T			2012-703:2012-1309-T	g.chr8:35624406C>T	uc003xjr.1	+						UNC5D_uc003xjs.1_Intron|UNC5D_uc003xju.1_Intron	NM_080872	NP_543148
NECAB1	64168	broad.mit.edu	37	8	91953146	91953146	+	Intron	SNP	C	T	T			2012-703:2012-1309-T	g.chr8:91953146C>T	uc011lgg.1	+						NECAB1_uc003yer.2_Intron	NM_022351	NP_071746
CSMD3	114788	broad.mit.edu	37	8	113249380	113249380	+	Intron	SNP	T	A	A			2012-703:2012-1309-T	g.chr8:113249380T>A	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
CSMD3	114788	broad.mit.edu	37	8	113364727	113364727	+	Missense_Mutation	SNP	G	T	T			2012-703:2012-1309-T	g.chr8:113364727G>T	uc003ynu.2	-	39	6332	c.6173C>A	c.(6172-6174)CCT>CAT	p.P2058H	CSMD3_uc003yns.2_Missense_Mutation_p.P1260H|CSMD3_uc003ynt.2_Missense_Mutation_p.P2018H|CSMD3_uc011lhx.1_Missense_Mutation_p.P1954H	NM_198123	NP_937756
ZFP41	286128	broad.mit.edu	37	8	144342173	144342173	+	3'UTR	SNP	G	C	C			2012-703:2012-1309-T	g.chr8:144342173G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
ZFP41	286128	broad.mit.edu	37	8	144342202	144342202	+	3'UTR	SNP	G	C	C			2012-703:2012-1309-T	g.chr8:144342202G>C	uc003yxw.2	+	3					ZFP41_uc003yxv.2_Intron	NM_173832	NP_776193
TOP1MT	116447	broad.mit.edu	37	8	144403722	144403722	+	Intron	SNP	G	A	A	rs138352295	by1000genomes	2012-703:2012-1309-T	g.chr8:144403722G>A	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
VAV2	7410	broad.mit.edu	37	9	136693269	136693269	+	Intron	SNP	A	G	G			2012-703:2012-1309-T	g.chr9:136693269A>G	uc004ces.2	-						VAV2_uc004cer.2_Intron	NM_001134398	NP_001127870
HEPH	9843	broad.mit.edu	37	X	65392501	65392501	+	Intron	SNP	C	T	T			2012-703:2012-1309-T	g.chrX:65392501C>T	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
SCNN1D	6339	broad.mit.edu	37	1	1223826	1223826	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr1:1223826T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1225279	1225279	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr1:1225279T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
CHD5	26038	broad.mit.edu	37	1	6219545	6219545	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr1:6219545C>T	uc001amb.1	-	3	338	c.238G>A	c.(238-240)GAG>AAG	p.E80K		NM_015557	NP_056372
PIK3CD	5293	broad.mit.edu	37	1	9784245	9784245	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr1:9784245T>G	uc001aqb.3	+						PIK3CD_uc010oaf.1_Intron|PIK3CD_uc001aqe.3_Intron	NM_005026	NP_005017
NBPF3	84224	broad.mit.edu	37	1	21800003	21800003	+	Missense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr1:21800003G>A	uc001ber.2	+	7	1215	c.865G>A	c.(865-867)GAA>AAA	p.E289K	NBPF3_uc001bes.2_Missense_Mutation_p.E233K|NBPF3_uc009vqb.2_Missense_Mutation_p.E289K|NBPF3_uc010odm.1_Missense_Mutation_p.E219K	NM_032264	NP_115640
MACF1	23499	broad.mit.edu	37	1	39889615	39889615	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr1:39889615T>G	uc010oiu.1	+						MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron	NM_033044	NP_149033
PTPRF	5792	broad.mit.edu	37	1	44071018	44071018	+	Missense_Mutation	SNP	A	C	C			2012-705:2012-1310-T	g.chr1:44071018A>C	uc001cjr.2	+	18	3633	c.3293A>C	c.(3292-3294)GAC>GCC	p.D1098A	PTPRF_uc001cjs.2_Missense_Mutation_p.D1089A|PTPRF_uc001cju.2_Missense_Mutation_p.D476A|PTPRF_uc009vwt.2_Missense_Mutation_p.D658A|PTPRF_uc001cjv.2_Missense_Mutation_p.D558A|PTPRF_uc001cjw.2_Missense_Mutation_p.D324A	NM_002840	NP_002831
COL11A1	1301	broad.mit.edu	37	1	103491726	103491726	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr1:103491726G>A	uc001dul.2	-						COL11A1_uc001duk.2_Intron|COL11A1_uc001dum.2_Intron|COL11A1_uc001dun.2_Intron|COL11A1_uc009weh.2_Intron	NM_001854	NP_001845
NOTCH2	4853	broad.mit.edu	37	1	120465504	120465504	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr1:120465504C>T	uc001eik.2	-							NM_024408	NP_077719
NOTCH2	4853	broad.mit.edu	37	1	120596846	120596846	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr1:120596846G>A	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
PDE4DIP	9659	broad.mit.edu	37	1	144854452	144854452	+	Intron	SNP	T	A	A	rs3863690	by1000genomes	2012-705:2012-1310-T	g.chr1:144854452T>A	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001elv.3_Intron	NM_014644	NP_055459
LOC200030	200030	broad.mit.edu	37	1	148005000	148005000	+	Intron	SNP	C	A	A	rs71729867		2012-705:2012-1310-T	g.chr1:148005000C>A	uc001eqf.2	-						LOC200030_uc010ozz.1_Intron|LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqq.2_Intron	NM_017940	NP_060410
DDR2	4921	broad.mit.edu	37	1	162602099	162602099	+	5'Flank	SNP	C	T	T			2012-705:2012-1310-T	g.chr1:162602099C>T	uc001gcf.2	+						DDR2_uc001gcg.2_5'Flank	NM_001014796	NP_001014796
DDR2	4921	broad.mit.edu	37	1	162740536	162740536	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr1:162740536G>C	uc001gcf.2	+						DDR2_uc001gcg.2_Intron	NM_001014796	NP_001014796
IRF6	3664	broad.mit.edu	37	1	209969630	209969630	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr1:209969630C>T	uc001hhq.1	-						IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Intron	NM_006147	NP_006138
CABC1	56997	broad.mit.edu	37	1	227147862	227147862	+	Intron	SNP	A	G	G			2012-705:2012-1310-T	g.chr1:227147862A>G	uc001hqm.1	+						CABC1_uc010pvp.1_Intron|CABC1_uc001hqn.1_Intron|CABC1_uc009xeq.1_Intron|CABC1_uc010pvq.1_Intron	NM_020247	NP_064632
DIP2C	22982	broad.mit.edu	37	10	463933	463933	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr10:463933C>T	uc001ifp.2	-							NM_014974	NP_055789
DIP2C	22982	broad.mit.edu	37	10	703621	703621	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr10:703621G>C	uc001ifp.2	-						C10orf108_uc001ifr.2_Intron	NM_014974	NP_055789
ADARB2	105	broad.mit.edu	37	10	1369988	1369988	+	Intron	SNP	G	T	T			2012-705:2012-1310-T	g.chr10:1369988G>T	uc009xhq.2	-							NM_018702	NP_061172
PCDH15	65217	broad.mit.edu	37	10	55570318	55570318	+	Missense_Mutation	SNP	C	G	G			2012-705:2012-1310-T	g.chr10:55570318C>G	uc010qhs.1	-	36	4911	c.4516G>C	c.(4516-4518)GAG>CAG	p.E1506Q	PCDH15_uc010qhq.1_Missense_Mutation_p.E1499Q|PCDH15_uc010qhr.1_Missense_Mutation_p.E1494Q|PCDH15_uc010qht.1_Missense_Mutation_p.E1499Q|PCDH15_uc010qhu.1_Missense_Mutation_p.K1517N	NM_001142769	NP_001136241
GPR123	84435	broad.mit.edu	37	10	134891920	134891920	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr10:134891920T>G	uc001llw.2	+								
MUC2	4583	broad.mit.edu	37	11	1092971	1092971	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr11:1092971C>T	uc001lsx.1	+	31	11903	c.11876C>T	c.(11875-11877)ACA>ATA	p.T3959I		NM_002457	NP_002448
PIK3C2A	5286	broad.mit.edu	37	11	17132120	17132121	+	Intron	DNP	GG	AA	AA			2012-705:2012-1310-T	g.chr11:17132120_17132121GG>AA	uc001mmq.3	-						PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Intron|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636
PIK3C2A	5286	broad.mit.edu	37	11	17139196	17139196	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr11:17139196C>T	uc001mmq.3	-	18	3124	c.3058G>A	c.(3058-3060)GAT>AAT	p.D1020N	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Missense_Mutation_p.D640N|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636
ELP4	26610	broad.mit.edu	37	11	31531321	31531321	+	5'UTR	SNP	G	C	C			2012-705:2012-1310-T	g.chr11:31531321G>C	uc001mtb.2	+	1					IMMP1L_uc001msy.1_5'Flank|IMMP1L_uc001msz.1_5'Flank|ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_5'UTR|ELP4_uc010rdz.1_5'UTR|IMMP1L_uc009yjo.2_5'Flank|IMMP1L_uc009yjp.2_5'Flank	NM_019040	NP_061913
ELP4	26610	broad.mit.edu	37	11	31671760	31671760	+	Silent	SNP	C	T	T			2012-705:2012-1310-T	g.chr11:31671760C>T	uc001mtb.2	+	9	1169	c.1134C>T	c.(1132-1134)TTC>TTT	p.F378F	ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_Silent_p.F378F|ELP4_uc010rdz.1_Silent_p.F379F	NM_019040	NP_061913
FAT3	120114	broad.mit.edu	37	11	92439038	92439038	+	Intron	SNP	A	G	G			2012-705:2012-1310-T	g.chr11:92439038A>G	uc001pdj.3	+							NM_001008781	NP_001008781
ETV6	2120	broad.mit.edu	37	12	11905436	11905436	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr12:11905436C>T	uc001qzz.2	+	2	360	c.86C>T	c.(85-87)TCC>TTC	p.S29F		NM_001987	NP_001978
PDE3A	5139	broad.mit.edu	37	12	20774266	20774266	+	Silent	SNP	C	T	T			2012-705:2012-1310-T	g.chr12:20774266C>T	uc001reh.1	+	5	1483	c.1461C>T	c.(1459-1461)CTC>CTT	p.L487L		NM_000921	NP_000912
MLL2	8085	broad.mit.edu	37	12	49427743	49427743	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr12:49427743C>T	uc001rta.3	-	39	10745	c.10745G>A	c.(10744-10746)CGG>CAG	p.R3582Q		NM_003482	NP_003473
E2F7	144455	broad.mit.edu	37	12	77423723	77423723	+	Nonsense_Mutation	SNP	G	C	C			2012-705:2012-1310-T	g.chr12:77423723G>C	uc001sym.3	-	10	2008	c.1772C>G	c.(1771-1773)TCA>TGA	p.S591*	E2F7_uc009zse.2_Nonsense_Mutation_p.S78*	NM_203394	NP_976328
TMEM132D	121256	broad.mit.edu	37	12	129694054	129694054	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr12:129694054T>G	uc009zyl.1	-							NM_133448	NP_597705
TMEM132D	121256	broad.mit.edu	37	12	130340085	130340085	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr12:130340085G>C	uc009zyl.1	-							NM_133448	NP_597705
BRCA2	675	broad.mit.edu	37	13	32931988	32931988	+	Missense_Mutation	SNP	G	C	C			2012-705:2012-1310-T	g.chr13:32931988G>C	uc001uub.1	+	16	7954	c.7727G>C	c.(7726-7728)GGA>GCA	p.G2576A		NM_000059	NP_000050
C13orf35	400165	broad.mit.edu	37	13	113299703	113299704	+	5'Flank	DNP	CA	TG	TG	rs117360698		2012-705:2012-1310-T	g.chr13:113299703_113299704CA>TG	uc001vsh.1	+							NM_207440	NP_997323
RIN3	79890	broad.mit.edu	37	14	93106422	93106422	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr14:93106422G>A	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
TLN2	83660	broad.mit.edu	37	15	63030295	63030295	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr15:63030295T>G	uc002alb.3	+						TLN2_uc002alc.3_5'Flank	NM_015059	NP_055874
LMF1	64788	broad.mit.edu	37	16	1000372	1000372	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr16:1000372G>A	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
BAIAP3	8938	broad.mit.edu	37	16	1389827	1389827	+	Intron	SNP	C	G	G			2012-705:2012-1310-T	g.chr16:1389827C>G	uc002clk.1	+						BAIAP3_uc002clj.2_Intron|BAIAP3_uc010uuz.1_Intron|BAIAP3_uc010uva.1_Intron|BAIAP3_uc010uvb.1_Intron|BAIAP3_uc010uvc.1_Intron	NM_003933	NP_003924
DNAH3	55567	broad.mit.edu	37	16	21082039	21082039	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr16:21082039C>T	uc010vbe.1	-	22	3193	c.3193G>A	c.(3193-3195)GAA>AAA	p.E1065K		NM_017539	NP_060009
PHLPP2	23035	broad.mit.edu	37	16	71692340	71692340	+	Intron	SNP	C	G	G			2012-705:2012-1310-T	g.chr16:71692340C>G	uc002fax.2	-						PHLPP2_uc002fav.2_Intron|PHLPP2_uc010cgf.2_Intron	NM_015020	NP_055835
ABR	29	broad.mit.edu	37	17	1046281	1046282	+	Intron	DNP	GC	AT	AT			2012-705:2012-1310-T	g.chr17:1046281_1046282GC>AT	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1046325	1046325	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr17:1046325G>A	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
USP6	9098	broad.mit.edu	37	17	5072225	5072225	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr17:5072225C>T	uc002gau.1	+	35	5622	c.3392C>T	c.(3391-3393)TCC>TTC	p.S1131F	USP6_uc002gav.1_Missense_Mutation_p.S1131F|USP6_uc010ckz.1_Missense_Mutation_p.S814F	NM_004505	NP_004496
GAS7	8522	broad.mit.edu	37	17	9821388	9821388	+	Missense_Mutation	SNP	A	C	C			2012-705:2012-1310-T	g.chr17:9821388A>C	uc002gmg.1	-	13	1408	c.1247T>G	c.(1246-1248)GTA>GGA	p.V416G	GAS7_uc010vvc.1_Missense_Mutation_p.V230G|GAS7_uc002gmh.1_Missense_Mutation_p.V276G|GAS7_uc010vvd.1_Missense_Mutation_p.V368G|GAS7_uc002gmi.2_Missense_Mutation_p.V352G|GAS7_uc002gmj.1_Missense_Mutation_p.V356G|GAS7_uc010coh.1_Missense_Mutation_p.V356G	NM_201433	NP_958839
MYH4	4622	broad.mit.edu	37	17	10348204	10348204	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr17:10348204C>T	uc002gmn.2	-	38	5590	c.5479G>A	c.(5479-5481)GAA>AAA	p.E1827K	uc002gml.1_Intron	NM_017533	NP_060003
LRRC37B	114659	broad.mit.edu	37	17	30347986	30347986	+	5'Flank	SNP	G	A	A			2012-705:2012-1310-T	g.chr17:30347986G>A	uc002hgu.2	+						LRRC37B_uc010wbx.1_Intron|LRRC37B_uc010csu.2_5'Flank	NM_052888	NP_443120
KRT9	3857	broad.mit.edu	37	17	39723885	39723885	+	Silent	SNP	A	C	C			2012-705:2012-1310-T	g.chr17:39723885A>C	uc002hxe.3	-	7	1578	c.1512T>G	c.(1510-1512)GGT>GGG	p.G504G	JUP_uc010wfs.1_Intron	NM_000226	NP_000217
STAT3	6774	broad.mit.edu	37	17	40477145	40477145	+	Intron	SNP	A	C	C			2012-705:2012-1310-T	g.chr17:40477145A>C	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
TUBG1	7283	broad.mit.edu	37	17	40761755	40761755	+	5'UTR	SNP	G	T	T			2012-705:2012-1310-T	g.chr17:40761755G>T	uc002ian.2	+	1					FAM134C_uc002ial.2_5'Flank|FAM134C_uc010wgq.1_5'Flank|FAM134C_uc002iam.1_5'Flank|FAM134C_uc010cyk.1_Intron	NM_001070	NP_001061
TUBG1	7283	broad.mit.edu	37	17	40761954	40761954	+	Intron	SNP	G	T	T			2012-705:2012-1310-T	g.chr17:40761954G>T	uc002ian.2	+						FAM134C_uc002ial.2_5'Flank|FAM134C_uc010wgq.1_5'Flank|FAM134C_uc002iam.1_5'Flank|FAM134C_uc010cyk.1_Intron	NM_001070	NP_001061
RAD51C	5889	broad.mit.edu	37	17	56780447	56780447	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr17:56780447G>C	uc002iwu.2	+						RAD51C_uc010woa.1_Intron|RAD51C_uc010ddc.2_Intron|RAD51C_uc002iwv.2_Intron|RAD51C_uc002iww.2_Intron|RAD51C_uc010wob.1_Intron	NM_058216	NP_478123
PRKCA	5578	broad.mit.edu	37	17	64795169	64795169	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr17:64795169G>C	uc002jfp.1	+							NM_002737	NP_002728
RPTOR	57521	broad.mit.edu	37	17	78717901	78717901	+	Intron	SNP	T	G	G	rs139657129		2012-705:2012-1310-T	g.chr17:78717901T>G	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78718120	78718120	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr17:78718120C>T	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78814178	78814178	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr17:78814178G>A	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
SLC16A3	9123	broad.mit.edu	37	17	80218368	80218368	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr17:80218368T>G	uc002kee.2	+						CSNK1D_uc002kef.2_Intron|CSNK1D_uc002kei.2_Intron|CSNK1D_uc002kej.2_Intron|CSNK1D_uc010wvj.1_Intron	NM_004207	NP_004198
C18orf1	753	broad.mit.edu	37	18	13262252	13262252	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr18:13262252T>C	uc002ksa.2	+						C18orf1_uc002ksb.2_Intron	NM_181481	NP_852146
ZNF521	25925	broad.mit.edu	37	18	22804434	22804434	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr18:22804434C>T	uc002kvk.2	-	4	3695	c.3448G>A	c.(3448-3450)GAA>AAA	p.E1150K	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.E1150K|ZNF521_uc002kvl.2_Missense_Mutation_p.E930K	NM_015461	NP_056276
KIAA0427	9811	broad.mit.edu	37	18	46257032	46257032	+	Intron	SNP	G	T	T	rs143821937	by1000genomes	2012-705:2012-1310-T	g.chr18:46257032G>T	uc002ldc.2	+						KIAA0427_uc002ldd.2_Intron	NM_014772	NP_055587
PHLPP1	23239	broad.mit.edu	37	18	60383407	60383407	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr18:60383407C>T	uc002lis.2	+							NM_194449	NP_919431
MBP	4155	broad.mit.edu	37	18	74748264	74748264	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr18:74748264G>A	uc010xfd.1	-						MBP_uc002lmr.2_Intron	NM_001025101	NP_001020272
ATP9B	374868	broad.mit.edu	37	18	76905428	76905428	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr18:76905428G>A	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmy.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
ATP9B	374868	broad.mit.edu	37	18	76906175	76906175	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr18:76906175C>T	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmy.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
ATP9B	374868	broad.mit.edu	37	18	77087942	77087942	+	Intron	SNP	C	A	A			2012-705:2012-1310-T	g.chr18:77087942C>A	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
NFATC1	4772	broad.mit.edu	37	18	77177743	77177743	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr18:77177743G>C	uc010xfg.1	+						NFATC1_uc002lnc.1_Intron|NFATC1_uc010xff.1_Intron|NFATC1_uc002lnd.2_Intron|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfi.1_Intron|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Intron|NFATC1_uc002lng.2_Intron|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153
FSTL3	10272	broad.mit.edu	37	19	682423	682423	+	3'UTR	SNP	G	A	A			2012-705:2012-1310-T	g.chr19:682423G>A	uc002lpk.1	+	5					FSTL3_uc010drt.1_RNA	NM_005860	NP_005851
ARID3A	1820	broad.mit.edu	37	19	950140	950140	+	Intron	SNP	C	G	G			2012-705:2012-1310-T	g.chr19:950140C>G	uc002lql.2	+							NM_005224	NP_005215
DOHH	83475	broad.mit.edu	37	19	3491107	3491107	+	3'UTR	SNP	C	T	T			2012-705:2012-1310-T	g.chr19:3491107C>T	uc002lxs.2	-	5					DOHH_uc010xhl.1_3'UTR	NM_031304	NP_112594
TPRX1	284355	broad.mit.edu	37	19	48305670	48305670	+	Missense_Mutation	SNP	A	G	G			2012-705:2012-1310-T	g.chr19:48305670A>G	uc002php.1	-	2	669	c.598T>C	c.(598-600)TCA>CCA	p.S200P		NM_198479	NP_940881
NLRP4	147945	broad.mit.edu	37	19	56362275	56362275	+	Intron	SNP	C	A	A			2012-705:2012-1310-T	g.chr19:56362275C>A	uc002qmd.3	+							NM_134444	NP_604393
NLRP4	147945	broad.mit.edu	37	19	56362675	56362675	+	Intron	SNP	C	A	A			2012-705:2012-1310-T	g.chr19:56362675C>A	uc002qmd.3	+							NM_134444	NP_604393
PEG3	5178	broad.mit.edu	37	19	57328216	57328216	+	Missense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr19:57328216G>A	uc002qnu.2	-	7	1945	c.1594C>T	c.(1594-1596)CTT>TTT	p.L532F	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.L503F|PEG3_uc002qnv.2_Missense_Mutation_p.L532F|PEG3_uc002qnw.2_Missense_Mutation_p.L408F|PEG3_uc002qnx.2_Missense_Mutation_p.L406F|PEG3_uc010etr.2_Missense_Mutation_p.L532F	NM_001146186	NP_001139658
GALNT14	79623	broad.mit.edu	37	2	31165249	31165249	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr2:31165249G>A	uc002rnr.2	-						GALNT14_uc002rnq.2_Intron|GALNT14_uc002rns.2_Intron|GALNT14_uc010ymr.1_Intron|GALNT14_uc010ezo.1_Intron|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848
RMND5A	64795	broad.mit.edu	37	2	87643277	87643277	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr2:87643277T>C	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643286	87643286	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr2:87643286T>G	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644456	87644456	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr2:87644456G>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645983	87645983	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr2:87645983G>C	uc002srs.3	+								
PKP4	8502	broad.mit.edu	37	2	159519467	159519467	+	Missense_Mutation	SNP	T	G	G			2012-705:2012-1310-T	g.chr2:159519467T>G	uc002tzv.2	+	14	2530	c.2270T>G	c.(2269-2271)GTG>GGG	p.V757G	PKP4_uc002tzt.1_Missense_Mutation_p.V609G|PKP4_uc002tzu.2_Missense_Mutation_p.V757G|PKP4_uc002tzw.2_Missense_Mutation_p.V757G|PKP4_uc002tzx.2_Missense_Mutation_p.V414G|PKP4_uc002tzy.1_Missense_Mutation_p.V415G|PKP4_uc002uaa.2_Missense_Mutation_p.V609G|uc002uab.1_Intron|PKP4_uc002uac.2_5'UTR	NM_003628	NP_003619
PKP4	8502	broad.mit.edu	37	2	159519473	159519473	+	Missense_Mutation	SNP	A	C	C			2012-705:2012-1310-T	g.chr2:159519473A>C	uc002tzv.2	+	14	2536	c.2276A>C	c.(2275-2277)CAG>CCG	p.Q759P	PKP4_uc002tzt.1_Missense_Mutation_p.Q611P|PKP4_uc002tzu.2_Missense_Mutation_p.Q759P|PKP4_uc002tzw.2_Missense_Mutation_p.Q759P|PKP4_uc002tzx.2_Missense_Mutation_p.Q416P|PKP4_uc002tzy.1_Missense_Mutation_p.Q417P|PKP4_uc002uaa.2_Missense_Mutation_p.Q611P|uc002uab.1_Intron|PKP4_uc002uac.2_5'UTR	NM_003628	NP_003619
TTN	7273	broad.mit.edu	37	2	179434187	179434187	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr2:179434187C>T	uc010zfg.1	-	275	69192	c.68968G>A	c.(68968-68970)GAT>AAT	p.D22990N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D16685N|TTN_uc010zfi.1_Missense_Mutation_p.D16618N|TTN_uc010zfj.1_Missense_Mutation_p.D16493N	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179451387	179451387	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr2:179451387C>T	uc010zfg.1	-	257	56761	c.56537G>A	c.(56536-56538)CGC>CAC	p.R18846H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R12541H|TTN_uc010zfi.1_Missense_Mutation_p.R12474H|TTN_uc010zfj.1_Missense_Mutation_p.R12349H	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179552841	179552841	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr2:179552841C>T	uc010zfg.1	-	124	28800	c.28576G>A	c.(28576-28578)GAA>AAA	p.E9526K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6187K|TTN_uc010fre.1_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179600240	179600240	+	Missense_Mutation	SNP	C	G	G			2012-705:2012-1310-T	g.chr2:179600240C>G	uc010zfg.1	-	47	11425	c.11201G>C	c.(11200-11202)AGA>ACA	p.R3734T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R395T	NM_133378	NP_596869
PMS1	5378	broad.mit.edu	37	2	190732730	190732730	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr2:190732730G>A	uc002urh.3	+						PMS1_uc002urk.3_Intron|PMS1_uc002uri.3_Intron|PMS1_uc010zgc.1_Intron|PMS1_uc010zgd.1_Intron|PMS1_uc002urj.2_Intron|PMS1_uc010fry.1_Intron|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Intron|PMS1_uc002urm.2_Intron	NM_000534	NP_000525
PAK7	57144	broad.mit.edu	37	20	9560947	9560947	+	Nonsense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr20:9560947G>A	uc002wnl.2	-	5	1380	c.835C>T	c.(835-837)CAG>TAG	p.Q279*	PAK7_uc002wnk.2_Nonsense_Mutation_p.Q279*|PAK7_uc002wnj.2_Nonsense_Mutation_p.Q279*|PAK7_uc010gby.1_Nonsense_Mutation_p.Q279*	NM_020341	NP_065074
C20orf26	26074	broad.mit.edu	37	20	20336082	20336082	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr20:20336082G>C	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
TPTE	7179	broad.mit.edu	37	21	10998303	10998303	+	RNA	SNP	C	T	T			2012-705:2012-1310-T	g.chr21:10998303C>T	uc002yis.1	-	11		c.1950G>A					
RUNX1	861	broad.mit.edu	37	21	36366015	36366015	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr21:36366015G>C	uc010gmu.2	-						RUNX1_uc002yut.1_Intron|RUNX1_uc010gmv.2_Intron|RUNX1_uc002yuj.3_Intron|RUNX1_uc002yuk.3_Intron|RUNX1_uc002yum.1_Intron|RUNX1_uc010gmw.1_Intron	NM_001754	NP_001745
CABIN1	23523	broad.mit.edu	37	22	24491993	24491993	+	Missense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr22:24491993G>A	uc002zzi.1	+	25	4013	c.3886G>A	c.(3886-3888)GAA>AAA	p.E1296K	CABIN1_uc002zzj.1_Missense_Mutation_p.E1246K|CABIN1_uc002zzl.1_Missense_Mutation_p.E1296K	NM_012295	NP_036427
XRCC6	2547	broad.mit.edu	37	22	42049478	42049478	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr22:42049478G>C	uc003bao.1	+						XRCC6_uc003bap.1_Intron|XRCC6_uc011apc.1_Intron|XRCC6_uc003baq.1_Intron|XRCC6_uc003bar.1_Intron|XRCC6_uc003bas.1_Intron	NM_001469	NP_001460
XRCC6	2547	broad.mit.edu	37	22	42049580	42049580	+	Nonsense_Mutation	SNP	G	T	T			2012-705:2012-1310-T	g.chr22:42049580G>T	uc003bao.1	+	9	1247	c.1177G>T	c.(1177-1179)GAG>TAG	p.E393*	XRCC6_uc003bap.1_Nonsense_Mutation_p.E352*|XRCC6_uc011apc.1_Nonsense_Mutation_p.E343*|XRCC6_uc003baq.1_Nonsense_Mutation_p.E393*|XRCC6_uc003bar.1_Nonsense_Mutation_p.E393*|XRCC6_uc003bas.1_Nonsense_Mutation_p.E343*	NM_001469	NP_001460
XRCC6	2547	broad.mit.edu	37	22	42049658	42049658	+	Missense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr22:42049658G>A	uc003bao.1	+	9	1325	c.1255G>A	c.(1255-1257)GAG>AAG	p.E419K	XRCC6_uc003bap.1_Missense_Mutation_p.E378K|XRCC6_uc011apc.1_Missense_Mutation_p.E369K|XRCC6_uc003baq.1_Missense_Mutation_p.E419K|XRCC6_uc003bar.1_Missense_Mutation_p.E419K|XRCC6_uc003bas.1_Missense_Mutation_p.E369K	NM_001469	NP_001460
XRCC6	2547	broad.mit.edu	37	22	42049707	42049707	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr22:42049707G>C	uc003bao.1	+						XRCC6_uc003bap.1_Intron|XRCC6_uc011apc.1_Intron|XRCC6_uc003baq.1_Intron|XRCC6_uc003bar.1_Intron|XRCC6_uc003bas.1_Intron	NM_001469	NP_001460
XRCC6	2547	broad.mit.edu	37	22	42049725	42049725	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr22:42049725G>A	uc003bao.1	+						XRCC6_uc003bap.1_Intron|XRCC6_uc011apc.1_Intron|XRCC6_uc003baq.1_Intron|XRCC6_uc003bar.1_Intron|XRCC6_uc003bas.1_Intron	NM_001469	NP_001460
XRCC6	2547	broad.mit.edu	37	22	42049834	42049834	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr22:42049834G>A	uc003bao.1	+						XRCC6_uc003bap.1_Intron|XRCC6_uc011apc.1_Intron|XRCC6_uc003baq.1_Intron|XRCC6_uc003bar.1_Intron|XRCC6_uc003bas.1_Intron	NM_001469	NP_001460
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45196658	45196658	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr22:45196658C>T	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
FANCD2	2177	broad.mit.edu	37	3	10123111	10123111	+	Nonsense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr3:10123111C>T	uc003buw.2	+	32	3265	c.3187C>T	c.(3187-3189)CAG>TAG	p.Q1063*	FANCD2_uc003bux.1_Nonsense_Mutation_p.Q1063*|FANCD2_uc003buy.1_Nonsense_Mutation_p.Q1063*|FANCD2_uc010hcw.1_RNA|C3orf24_uc003buz.2_3'UTR	NM_033084	NP_149075
RAF1	5894	broad.mit.edu	37	3	12626582	12626582	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr3:12626582T>C	uc003bxf.3	-						RAF1_uc011aut.1_Intron|RAF1_uc011auu.1_Intron	NM_002880	NP_002871
CHCHD6	84303	broad.mit.edu	37	3	126581148	126581148	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr3:126581148T>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
CHCHD6	84303	broad.mit.edu	37	3	126582300	126582300	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr3:126582300T>C	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
EPHB3	2049	broad.mit.edu	37	3	184297318	184297318	+	Missense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr3:184297318G>A	uc003foz.2	+	10	2292	c.1855G>A	c.(1855-1857)GAG>AAG	p.E619K		NM_004443	NP_004434
LPP	4026	broad.mit.edu	37	3	187942801	187942801	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr3:187942801C>T	uc003frs.1	+						LPP_uc011bsg.1_Intron|LPP_uc011bsi.1_5'Flank	NM_005578	NP_005569
MUC4	4585	broad.mit.edu	37	3	195502805	195502805	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr3:195502805G>C	uc011bto.1	-						MUC4_uc003fuz.2_5'Flank|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
MAEA	10296	broad.mit.edu	37	4	1331283	1331283	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr4:1331283C>T	uc003gda.2	+						MAEA_uc003gdb.2_Intron|MAEA_uc011bvb.1_Intron|MAEA_uc003gdc.2_Intron|MAEA_uc003gdd.2_Intron|MAEA_uc011bvc.1_Intron|MAEA_uc011bvd.1_Intron|MAEA_uc010ibt.2_Intron|MAEA_uc010ibu.2_Intron	NM_001017405	NP_001017405
FGFR3	2261	broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	G	G	rs121913483		2012-705:2012-1310-T	g.chr4:1803568C>G	uc003gdr.3	+	7	1002	c.746C>G	c.(745-747)TCC>TGC	p.S249C	FGFR3_uc003gdu.2_Missense_Mutation_p.S249C|FGFR3_uc003gds.3_Missense_Mutation_p.S249C|FGFR3_uc003gdq.3_Missense_Mutation_p.S249C|FGFR3_uc010icb.1_Missense_Mutation_p.S91C|FGFR3_uc003gdt.1_Missense_Mutation_p.S91C	NM_000142	NP_000133
SORCS2	57537	broad.mit.edu	37	4	7455914	7455914	+	Intron	SNP	G	T	T			2012-705:2012-1310-T	g.chr4:7455914G>T	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
ANKRD17	26057	broad.mit.edu	37	4	74008120	74008120	+	Intron	SNP	G	T	T			2012-705:2012-1310-T	g.chr4:74008120G>T	uc003hgp.2	-						ANKRD17_uc003hgo.2_Intron|ANKRD17_uc003hgq.2_Intron|ANKRD17_uc003hgr.2_Intron|ANKRD17_uc011cbd.1_Intron	NM_032217	NP_115593
TET2	54790	broad.mit.edu	37	4	106067521	106067521	+	5'Flank	SNP	A	C	C			2012-705:2012-1310-T	g.chr4:106067521A>C	uc003hxk.2	+						TET2_uc011cez.1_5'Flank|TET2_uc010ilp.1_5'Flank|TET2_uc003hxi.1_5'Flank	NM_001127208	NP_001120680
FSTL5	56884	broad.mit.edu	37	4	162463806	162463806	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr4:162463806C>T	uc003iqh.2	-	9	1491	c.1055G>A	c.(1054-1056)AGA>AAA	p.R352K	FSTL5_uc003iqi.2_Missense_Mutation_p.R351K|FSTL5_uc010iqv.2_Missense_Mutation_p.R351K	NM_020116	NP_064501
FAT1	2195	broad.mit.edu	37	4	187539252	187539252	+	Nonsense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr4:187539252G>A	uc003izf.2	-	10	8676	c.8488C>T	c.(8488-8490)CAG>TAG	p.Q2830*		NM_005245	NP_005236
CEP72	55722	broad.mit.edu	37	5	650448	650448	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr5:650448G>A	uc003jbf.2	+							NM_018140	NP_060610
TERT	7015	broad.mit.edu	37	5	1273218	1273218	+	Intron	SNP	C	T	T	rs144414026	by1000genomes	2012-705:2012-1310-T	g.chr5:1273218C>T	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
SLC6A3	6531	broad.mit.edu	37	5	1422991	1422991	+	Intron	SNP	G	A	A	rs111248970		2012-705:2012-1310-T	g.chr5:1422991G>A	uc003jck.2	-							NM_001044	NP_001035
TRIO	7204	broad.mit.edu	37	5	14271085	14271085	+	Intron	SNP	A	C	C			2012-705:2012-1310-T	g.chr5:14271085A>C	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc011cna.1_Intron	NM_007118	NP_009049
IL6ST	3572	broad.mit.edu	37	5	55272098	55272098	+	Silent	SNP	C	T	T			2012-705:2012-1310-T	g.chr5:55272098C>T	uc003jqq.2	-	3	264	c.9G>A	c.(7-9)ACG>ACA	p.T3T	IL6ST_uc010iwb.2_Silent_p.T3T|IL6ST_uc010iwc.2_Silent_p.T3T|IL6ST_uc010iwd.2_5'UTR|IL6ST_uc011cqk.1_5'UTR|IL6ST_uc003jqr.2_Silent_p.T3T|IL6ST_uc010iwf.1_RNA	NM_002184	NP_002175
PIK3R1	5295	broad.mit.edu	37	5	67584733	67584733	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr5:67584733G>A	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron|PIK3R1_uc003jvc.2_Intron|PIK3R1_uc003jvd.2_5'Flank|PIK3R1_uc003jve.2_5'Flank	NM_181523	NP_852664
PIK3R1	5295	broad.mit.edu	37	5	67591135	67591135	+	Silent	SNP	G	A	A	rs149090706	byFrequency	2012-705:2012-1310-T	g.chr5:67591135G>A	uc003jva.2	+	13	2288	c.1728G>A	c.(1726-1728)ACG>ACA	p.T576T	PIK3R1_uc003jvb.2_Silent_p.T576T|PIK3R1_uc003jvc.2_Silent_p.T276T|PIK3R1_uc003jvd.2_Silent_p.T306T|PIK3R1_uc003jve.2_Silent_p.T255T|PIK3R1_uc011crb.1_Silent_p.T246T	NM_181523	NP_852664
NRG2	9542	broad.mit.edu	37	5	139422604	139422604	+	Silent	SNP	A	C	C			2012-705:2012-1310-T	g.chr5:139422604A>C	uc003lex.1	-	1	276	c.51T>G	c.(49-51)GGT>GGG	p.G17G	NRG2_uc003lev.1_Silent_p.G17G|NRG2_uc003lew.1_Silent_p.G17G|NRG2_uc003ley.1_Silent_p.G17G	NM_004883	NP_004874
NRG2	9542	broad.mit.edu	37	5	139422644	139422644	+	Missense_Mutation	SNP	A	C	C			2012-705:2012-1310-T	g.chr5:139422644A>C	uc003lex.1	-	1	236	c.11T>G	c.(10-12)GTT>GGT	p.V4G	NRG2_uc003lev.1_Missense_Mutation_p.V4G|NRG2_uc003lew.1_Missense_Mutation_p.V4G|NRG2_uc003ley.1_Missense_Mutation_p.V4G	NM_004883	NP_004874
PCDHB11	56125	broad.mit.edu	37	5	140578827	140578827	+	5'Flank	SNP	C	G	G			2012-705:2012-1310-T	g.chr5:140578827C>G	uc003liy.2	+						PCDHB11_uc011daj.1_5'Flank	NM_018931	NP_061754
EBF1	1879	broad.mit.edu	37	5	158204535	158204535	+	Missense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr5:158204535G>A	uc010jip.2	-	10	1224	c.922C>T	c.(922-924)CAT>TAT	p.H308Y	EBF1_uc011ddw.1_Missense_Mutation_p.H176Y|EBF1_uc011ddx.1_Missense_Mutation_p.H309Y|EBF1_uc003lxl.3_Missense_Mutation_p.H277Y	NM_024007	NP_076870
NKAPL	222698	broad.mit.edu	37	6	28228020	28228020	+	Missense_Mutation	SNP	G	A	A			2012-705:2012-1310-T	g.chr6:28228020G>A	uc003nkt.2	+	1	923	c.871G>A	c.(871-873)GAA>AAA	p.E291K	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532
HLA-G	3135	broad.mit.edu	37	6	29894490	29894490	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr6:29894490G>A	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_RNA	NM_002127	NP_002118
AIM1	202	broad.mit.edu	37	6	106968620	106968620	+	Silent	SNP	G	A	A			2012-705:2012-1310-T	g.chr6:106968620G>A	uc003prh.2	+	2	2800	c.2313G>A	c.(2311-2313)CAG>CAA	p.Q771Q		NM_001624	NP_001615
SYNE1	23345	broad.mit.edu	37	6	152469231	152469231	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr6:152469231C>T	uc010kiw.2	-	137	25527	c.24925G>A	c.(24925-24927)GAA>AAA	p.E8309K	SYNE1_uc010kiv.2_Missense_Mutation_p.E2833K|SYNE1_uc003qos.3_Missense_Mutation_p.E2833K|SYNE1_uc003qot.3_Missense_Mutation_p.E8238K|SYNE1_uc003qou.3_Missense_Mutation_p.E8309K|SYNE1_uc003qop.3_Missense_Mutation_p.E471K|SYNE1_uc011eez.1_Missense_Mutation_p.E511K|SYNE1_uc003qoq.3_Missense_Mutation_p.E511K|SYNE1_uc003qor.3_Missense_Mutation_p.E1209K	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152949316	152949316	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr6:152949316G>C	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron	NM_182961	NP_892006
RPS6KA2	6196	broad.mit.edu	37	6	166863410	166863410	+	Intron	SNP	C	G	G	rs111344944	by1000genomes	2012-705:2012-1310-T	g.chr6:166863410C>G	uc003qvb.1	-						RPS6KA2_uc011ego.1_Intron|RPS6KA2_uc010kkl.1_Intron|RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
RPS6KA2	6196	broad.mit.edu	37	6	166863432	166863433	+	Intron	DNP	CA	AG	AG	rs76921227;rs116506556	by1000genomes;by1000genomes	2012-705:2012-1310-T	g.chr6:166863432_166863433CA>AG	uc003qvb.1	-						RPS6KA2_uc011ego.1_Intron|RPS6KA2_uc010kkl.1_Intron|RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
SMOC2	64094	broad.mit.edu	37	6	169012125	169012125	+	Intron	SNP	G	A	A	rs78348382	by1000genomes	2012-705:2012-1310-T	g.chr6:169012125G>A	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
PKD1L1	168507	broad.mit.edu	37	7	47937641	47937641	+	Missense_Mutation	SNP	T	G	G			2012-705:2012-1310-T	g.chr7:47937641T>G	uc003tny.1	-	14	2215	c.2215A>C	c.(2215-2217)ACC>CCC	p.T739P		NM_138295	NP_612152
PCLO	27445	broad.mit.edu	37	7	82579243	82579243	+	Nonsense_Mutation	SNP	G	T	T			2012-705:2012-1310-T	g.chr7:82579243G>T	uc003uhx.2	-	6	10950	c.10661C>A	c.(10660-10662)TCA>TAA	p.S3554*	PCLO_uc003uhv.2_Nonsense_Mutation_p.S3554*|PCLO_uc010lec.2_Nonsense_Mutation_p.S519*	NM_033026	NP_149015
ZNF804B	219578	broad.mit.edu	37	7	88965372	88965372	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chr7:88965372C>T	uc011khi.1	+	4	3614	c.3076C>T	c.(3076-3078)CTT>TTT	p.L1026F		NM_181646	NP_857597
EMID2	136227	broad.mit.edu	37	7	101080744	101080744	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr7:101080744T>G	uc010lhy.1	+						EMID2_uc003uyo.1_Intron	NM_133457	NP_597714
GRM8	2918	broad.mit.edu	37	7	126079146	126079146	+	3'UTR	SNP	C	G	G			2012-705:2012-1310-T	g.chr7:126079146C>G	uc003vlr.2	-	10					GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_3'UTR|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836
PLXNA4	91584	broad.mit.edu	37	7	132246115	132246115	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr7:132246115C>T	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
PTPRN2	5799	broad.mit.edu	37	7	157355857	157355857	+	Intron	SNP	A	G	G			2012-705:2012-1310-T	g.chr7:157355857A>G	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|PTPRN2_uc003wnn.2_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157392608	157392608	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr7:157392608T>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157392799	157392799	+	Intron	SNP	G	C	C			2012-705:2012-1310-T	g.chr7:157392799G>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157640244	157640244	+	Intron	SNP	G	A	A			2012-705:2012-1310-T	g.chr7:157640244G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157851279	157851280	+	Intron	DNP	GA	CG	CG			2012-705:2012-1310-T	g.chr7:157851279_157851280GA>CG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158316744	158316744	+	Intron	SNP	A	T	T			2012-705:2012-1310-T	g.chr7:158316744A>T	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1779713	1779713	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr8:1779713C>T	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
TEX15	56154	broad.mit.edu	37	8	30704937	30704937	+	Missense_Mutation	SNP	C	G	G			2012-705:2012-1310-T	g.chr8:30704937C>G	uc003xil.2	-	1	1597	c.1597G>C	c.(1597-1599)GAA>CAA	p.E533Q		NM_031271	NP_112561
RB1CC1	9821	broad.mit.edu	37	8	53627004	53627004	+	5'UTR	SNP	C	G	G			2012-705:2012-1310-T	g.chr8:53627004C>G	uc003xre.3	-	1					RB1CC1_uc003xrf.3_5'UTR	NM_014781	NP_055596
ZFHX4	79776	broad.mit.edu	37	8	77767845	77767845	+	Silent	SNP	C	T	T			2012-705:2012-1310-T	g.chr8:77767845C>T	uc003yav.2	+	10	8940	c.8553C>T	c.(8551-8553)GCC>GCT	p.A2851A	ZFHX4_uc003yau.1_Silent_p.A2896A|ZFHX4_uc003yaw.1_Silent_p.A2851A	NM_024721	NP_078997
ZFHX4	79776	broad.mit.edu	37	8	77767980	77767980	+	Silent	SNP	C	T	T			2012-705:2012-1310-T	g.chr8:77767980C>T	uc003yav.2	+	10	9075	c.8688C>T	c.(8686-8688)CTC>CTT	p.L2896L	ZFHX4_uc003yau.1_Silent_p.L2941L|ZFHX4_uc003yaw.1_Silent_p.L2896L	NM_024721	NP_078997
PARP10	84875	broad.mit.edu	37	8	145055693	145055693	+	Intron	SNP	C	T	T			2012-705:2012-1310-T	g.chr8:145055693C>T	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
ARHGAP39	80728	broad.mit.edu	37	8	145786841	145786841	+	Intron	SNP	T	G	G			2012-705:2012-1310-T	g.chr8:145786841T>G	uc003zdt.1	-						ARHGAP39_uc011llk.1_Intron|ARHGAP39_uc003zds.1_Intron	NM_025251	NP_079527
EXD3	54932	broad.mit.edu	37	9	140223195	140223195	+	Intron	SNP	T	C	C			2012-705:2012-1310-T	g.chr9:140223195T>C	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
CLCN4	1183	broad.mit.edu	37	X	10163169	10163169	+	Intron	SNP	A	C	C			2012-705:2012-1310-T	g.chrX:10163169A>C	uc004csy.3	+						CLCN4_uc011mid.1_Intron	NM_001830	NP_001821
HEPH	9843	broad.mit.edu	37	X	65420239	65420239	+	Intron	SNP	G	T	T			2012-705:2012-1310-T	g.chrX:65420239G>T	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron|HEPH_uc010nks.2_5'Flank	NM_138737	NP_620074
NKAP	79576	broad.mit.edu	37	X	119064025	119064025	+	Missense_Mutation	SNP	C	T	T			2012-705:2012-1310-T	g.chrX:119064025C>T	uc004esh.2	-	8	1194	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	NKAP_uc004esg.2_Missense_Mutation_p.E230K	NM_024528	NP_078804
SAMD11	148398	broad.mit.edu	37	1	869556	869556	+	Intron	SNP	A	G	G			2012-706:2012-1311-T	g.chr1:869556A>G	uc001abw.1	+						SAMD11_uc001abv.1_Intron|SAMD11_uc001abx.1_5'Flank	NM_152486	NP_689699
SCNN1D	6339	broad.mit.edu	37	1	1224518	1224518	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr1:1224518T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1224576	1224576	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr1:1224576T>C	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRDM16	63976	broad.mit.edu	37	1	3296284	3296284	+	Intron	SNP	A	G	G			2012-706:2012-1311-T	g.chr1:3296284A>G	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PIK3CD	5293	broad.mit.edu	37	1	9784245	9784245	+	Intron	SNP	T	G	G			2012-706:2012-1311-T	g.chr1:9784245T>G	uc001aqb.3	+						PIK3CD_uc010oaf.1_Intron|PIK3CD_uc001aqe.3_Intron	NM_005026	NP_005017
NBPF1	55672	broad.mit.edu	37	1	16908027	16908027	+	Intron	SNP	C	A	A	rs1020239	by1000genomes	2012-706:2012-1311-T	g.chr1:16908027C>A	uc009vos.1	-						NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
NBPF1	55672	broad.mit.edu	37	1	16908045	16908045	+	Intron	SNP	C	T	T			2012-706:2012-1311-T	g.chr1:16908045C>T	uc009vos.1	-						NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410
PRCC	5546	broad.mit.edu	37	1	156737216	156737216	+	5'Flank	SNP	C	A	A			2012-706:2012-1311-T	g.chr1:156737216C>A	uc001fqa.2	+						PRCC_uc001fqb.2_5'Flank|HDGF_uc009wsf.2_5'Flank	NM_005973	NP_005964
SPTA1	6708	broad.mit.edu	37	1	158644506	158644506	+	Intron	SNP	G	C	C			2012-706:2012-1311-T	g.chr1:158644506G>C	uc001fst.1	-							NM_003126	NP_003117
DDR2	4921	broad.mit.edu	37	1	162740212	162740212	+	Missense_Mutation	SNP	G	T	T			2012-706:2012-1311-T	g.chr1:162740212G>T	uc001gcf.2	+	13	1879	c.1414G>T	c.(1414-1416)GAT>TAT	p.D472Y	DDR2_uc001gcg.2_Missense_Mutation_p.D472Y	NM_001014796	NP_001014796
ADARB2	105	broad.mit.edu	37	10	1282000	1282000	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr10:1282000T>C	uc009xhq.2	-							NM_018702	NP_061172
ADARB2	105	broad.mit.edu	37	10	1382532	1382532	+	Intron	SNP	G	A	A	rs75891313		2012-706:2012-1311-T	g.chr10:1382532G>A	uc009xhq.2	-							NM_018702	NP_061172
PRKG1	5592	broad.mit.edu	37	10	52834720	52834720	+	Intron	SNP	C	A	A			2012-706:2012-1311-T	g.chr10:52834720C>A	uc001jjm.2	+						PRKG1_uc001jjn.2_Intron|PRKG1_uc001jjo.2_Intron|PRKG1_uc010qhp.1_Intron	NM_001098512	NP_001091982
KCNMA1	3778	broad.mit.edu	37	10	79279868	79279868	+	Intron	SNP	G	T	T	rs73284468	by1000genomes	2012-706:2012-1311-T	g.chr10:79279868G>T	uc001jxn.2	-						KCNMA1_uc001jxj.2_Intron|KCNMA1_uc001jxo.2_Intron|KCNMA1_uc001jxm.2_Intron|KCNMA1_uc001jxq.2_Intron	NM_001161352	NP_001154824
AHNAK	79026	broad.mit.edu	37	11	62287137	62287137	+	Missense_Mutation	SNP	C	A	A			2012-706:2012-1311-T	g.chr11:62287137C>A	uc001ntl.2	-	5	15052	c.14752G>T	c.(14752-14754)GCT>TCT	p.A4918S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611
ERBB3	2065	broad.mit.edu	37	12	56473425	56473425	+	5'Flank	SNP	T	G	G			2012-706:2012-1311-T	g.chr12:56473425T>G	uc001sjh.2	+						ERBB3_uc009zoj.2_5'Flank|ERBB3_uc010sqb.1_5'Flank|ERBB3_uc001sjg.2_5'Flank	NM_001982	NP_001973
TMEM132D	121256	broad.mit.edu	37	12	129573075	129573075	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr12:129573075T>C	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
GALNT9	50614	broad.mit.edu	37	12	132880376	132880376	+	Intron	SNP	C	G	G			2012-706:2012-1311-T	g.chr12:132880376C>G	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
GRTP1	79774	broad.mit.edu	37	13	113984415	113984415	+	Intron	SNP	T	C	C	rs150266655	by1000genomes	2012-706:2012-1311-T	g.chr13:113984415T>C	uc001vtn.2	-						GRTP1_uc010tkb.1_Intron|GRTP1_uc010tkc.1_Intron	NM_024719	NP_078995
FANCM	57697	broad.mit.edu	37	14	45623285	45623285	+	Intron	SNP	A	G	G			2012-706:2012-1311-T	g.chr14:45623285A>G	uc001wwd.3	+						FANCM_uc001wwc.2_Intron|FANCM_uc010anf.2_Intron|FANCM_uc001wwe.3_5'Flank	NM_020937	NP_065988
BCL11B	64919	broad.mit.edu	37	14	99723938	99723938	+	Silent	SNP	T	G	G			2012-706:2012-1311-T	g.chr14:99723938T>G	uc001yga.2	-	2	564	c.297A>C	c.(295-297)CCA>CCC	p.P99P	BCL11B_uc001ygb.2_Silent_p.P99P	NM_138576	NP_612808
ATP10A	57194	broad.mit.edu	37	15	26003803	26003803	+	Intron	SNP	C	T	T	rs61994074		2012-706:2012-1311-T	g.chr15:26003803C>T	uc010ayu.2	-							NM_024490	NP_077816
DECR2	26063	broad.mit.edu	37	16	458170	458170	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr16:458170T>C	uc002chb.2	+						DECR2_uc002chc.2_Intron|DECR2_uc010bqv.2_Intron|DECR2_uc002chd.2_Intron|DECR2_uc002che.1_Intron	NM_020664	NP_065715
DECR2	26063	broad.mit.edu	37	16	458184	458184	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr16:458184T>C	uc002chb.2	+						DECR2_uc002chc.2_Intron|DECR2_uc010bqv.2_Intron|DECR2_uc002chd.2_Intron|DECR2_uc002che.1_Intron	NM_020664	NP_065715
DECR2	26063	broad.mit.edu	37	16	458226	458226	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr16:458226T>C	uc002chb.2	+						DECR2_uc002chc.2_Intron|DECR2_uc010bqv.2_Intron|DECR2_uc002chd.2_Intron|DECR2_uc002che.1_Intron	NM_020664	NP_065715
HYDIN	54768	broad.mit.edu	37	16	70917705	70917705	+	Intron	SNP	C	T	T	rs11075804		2012-706:2012-1311-T	g.chr16:70917705C>T	uc002ezr.2	-							NM_032821	NP_116210
RPH3AL	9501	broad.mit.edu	37	17	122825	122825	+	Intron	SNP	C	T	T			2012-706:2012-1311-T	g.chr17:122825C>T	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
RPH3AL	9501	broad.mit.edu	37	17	157153	157153	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr17:157153T>C	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
NXN	64359	broad.mit.edu	37	17	795164	795164	+	Intron	SNP	C	T	T			2012-706:2012-1311-T	g.chr17:795164C>T	uc002fsa.2	-						NXN_uc002fsb.1_Intron	NM_022463	NP_071908
TP53	7157	broad.mit.edu	37	17	7578550	7578550	+	Missense_Mutation	SNP	G	A	A			2012-706:2012-1311-T	g.chr17:7578550G>A	uc002gim.2	-	5	574	c.380C>T	c.(379-381)TCC>TTC	p.S127F	TP53_uc002gig.1_Missense_Mutation_p.S127F|TP53_uc002gih.2_Missense_Mutation_p.S127F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'UTR|TP53_uc010cng.1_5'UTR|TP53_uc002gii.1_5'UTR|TP53_uc010cnh.1_Missense_Mutation_p.S127F|TP53_uc010cni.1_Missense_Mutation_p.S127F|TP53_uc002gij.2_Missense_Mutation_p.S127F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.S34F|TP53_uc002gio.2_5'UTR|TP53_uc010vug.1_Missense_Mutation_p.S88F	NM_001126112	NP_001119584
GAS7	8522	broad.mit.edu	37	17	9821388	9821388	+	Missense_Mutation	SNP	A	C	C			2012-706:2012-1311-T	g.chr17:9821388A>C	uc002gmg.1	-	13	1408	c.1247T>G	c.(1246-1248)GTA>GGA	p.V416G	GAS7_uc010vvc.1_Missense_Mutation_p.V230G|GAS7_uc002gmh.1_Missense_Mutation_p.V276G|GAS7_uc010vvd.1_Missense_Mutation_p.V368G|GAS7_uc002gmi.2_Missense_Mutation_p.V352G|GAS7_uc002gmj.1_Missense_Mutation_p.V356G|GAS7_uc010coh.1_Missense_Mutation_p.V356G	NM_201433	NP_958839
10-Mar	162333	broad.mit.edu	37	17	60870112	60870112	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr17:60870112T>C	uc010ddr.2	-						MARCH10_uc002jag.3_Intron|MARCH10_uc010dds.2_Intron|MARCH10_uc002jah.2_Intron	NM_001100875	NP_001094345
PRKCA	5578	broad.mit.edu	37	17	64795160	64795160	+	Intron	SNP	G	A	A			2012-706:2012-1311-T	g.chr17:64795160G>A	uc002jfp.1	+							NM_002737	NP_002728
ABCA6	23460	broad.mit.edu	37	17	67087426	67087426	+	Intron	SNP	T	G	G			2012-706:2012-1311-T	g.chr17:67087426T>G	uc002jhw.1	-							NM_080284	NP_525023
TEX19	400629	broad.mit.edu	37	17	80318700	80318700	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr17:80318700T>C	uc002keq.2	+							NM_207459	NP_997342
SIPA1L3	23094	broad.mit.edu	37	19	38687042	38687042	+	Intron	SNP	A	T	T			2012-706:2012-1311-T	g.chr19:38687042A>T	uc002ohk.2	+							NM_015073	NP_055888
NLRP4	147945	broad.mit.edu	37	19	56362633	56362633	+	Intron	SNP	T	G	G			2012-706:2012-1311-T	g.chr19:56362633T>G	uc002qmd.3	+							NM_134444	NP_604393
PXDN	7837	broad.mit.edu	37	2	1714936	1714936	+	Intron	SNP	A	C	C			2012-706:2012-1311-T	g.chr2:1714936A>C	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
MYT1L	23040	broad.mit.edu	37	2	2239931	2239931	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr2:2239931T>C	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
HPCAL1	3241	broad.mit.edu	37	2	10539414	10539414	+	Intron	SNP	A	T	T			2012-706:2012-1311-T	g.chr2:10539414A>T	uc002raj.2	+						HPCAL1_uc002rak.2_Intron|HPCAL1_uc002ral.2_Intron|HPCAL1_uc010exe.2_Intron|HPCAL1_uc010exf.2_Intron	NM_002149	NP_002140
MSH6	2956	broad.mit.edu	37	2	48009694	48009694	+	5'Flank	SNP	G	A	A			2012-706:2012-1311-T	g.chr2:48009694G>A	uc002rwd.3	+						MSH6_uc002rwc.2_5'Flank|MSH6_uc010fbj.2_5'Flank|MSH6_uc010yoi.1_5'Flank|MSH6_uc010yoj.1_5'Flank	NM_000179	NP_000170
RMND5A	64795	broad.mit.edu	37	2	87644174	87644174	+	Intron	SNP	G	C	C			2012-706:2012-1311-T	g.chr2:87644174G>C	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644219	87644219	+	Intron	SNP	C	A	A	rs144364835	by1000genomes	2012-706:2012-1311-T	g.chr2:87644219C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87651754	87651754	+	Intron	SNP	C	A	A			2012-706:2012-1311-T	g.chr2:87651754C>A	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87656503	87656503	+	Intron	SNP	G	T	T	rs144665595	by1000genomes	2012-706:2012-1311-T	g.chr2:87656503G>T	uc002srs.3	+								
STAT1	6772	broad.mit.edu	37	2	191879086	191879086	+	5'Flank	SNP	T	G	G			2012-706:2012-1311-T	g.chr2:191879086T>G	uc002usj.2	-						STAT1_uc010fse.1_5'Flank|STAT1_uc002usk.2_5'Flank|STAT1_uc002usl.2_5'Flank|STAT1_uc010fsf.1_5'Flank	NM_007315	NP_009330
PROKR2	128674	broad.mit.edu	37	20	5294664	5294664	+	Nonsense_Mutation	SNP	G	A	A			2012-706:2012-1311-T	g.chr20:5294664G>A	uc010zqw.1	-	1	352	c.352C>T	c.(352-354)CAG>TAG	p.Q118*	PROKR2_uc010zqx.1_Nonsense_Mutation_p.Q118*|PROKR2_uc010zqy.1_Nonsense_Mutation_p.Q118*|uc002wly.1_5'Flank	NM_144773	NP_658986
CHRNA4	1137	broad.mit.edu	37	20	61985519	61985519	+	Intron	SNP	C	G	G			2012-706:2012-1311-T	g.chr20:61985519C>G	uc002yes.2	-						CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_Intron|CHRNA4_uc010gke.1_Intron|CHRNA4_uc002yev.1_Intron|CHRNA4_uc010gkf.1_Intron	NM_000744	NP_000735
BAGE2	85319	broad.mit.edu	37	21	11021274	11021274	+	Intron	SNP	G	A	A	rs4627671		2012-706:2012-1311-T	g.chr21:11021274G>A	uc002yit.1	-						TPTE_uc002yis.1_Intron	NM_182482	NP_872288
AGPAT3	56894	broad.mit.edu	37	21	45354799	45354799	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr21:45354799T>C	uc002zdv.2	+						AGPAT3_uc002zdw.2_Intron	NM_020132	NP_064517
MICAL3	57553	broad.mit.edu	37	22	18359917	18359917	+	Intron	SNP	T	G	G	rs144471751		2012-706:2012-1311-T	g.chr22:18359917T>G	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
MICAL3	57553	broad.mit.edu	37	22	18360025	18360025	+	Intron	SNP	T	G	G			2012-706:2012-1311-T	g.chr22:18360025T>G	uc002zng.3	-						MICAL3_uc011agl.1_Intron|MICAL3_uc002znh.2_Intron|MICAL3_uc002znj.1_Intron|MICAL3_uc002znk.1_Intron|MICAL3_uc002znl.1_Intron|MICAL3_uc002znm.2_Intron|MICAL3_uc010grf.2_Intron	NM_015241	NP_056056
MPPED1	758	broad.mit.edu	37	22	43891807	43891807	+	Intron	SNP	A	T	T			2012-706:2012-1311-T	g.chr22:43891807A>T	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
PLXNB2	23654	broad.mit.edu	37	22	50723734	50723734	+	Intron	SNP	C	T	T			2012-706:2012-1311-T	g.chr22:50723734C>T	uc003bkv.3	-						PLXNB2_uc003bku.1_5'Flank	NM_012401	NP_036533
POLQ	10721	broad.mit.edu	37	3	121206953	121206953	+	Nonsense_Mutation	SNP	C	A	A			2012-706:2012-1311-T	g.chr3:121206953C>A	uc003eee.3	-	16	4954	c.4825G>T	c.(4825-4827)GGA>TGA	p.G1609*	POLQ_uc003eed.2_Nonsense_Mutation_p.G781*	NM_199420	NP_955452
PIK3CA	5290	broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G	rs121913279		2012-706:2012-1311-T	g.chr3:178952085A>G	uc003fjk.2	+	21	3297	c.3140A>G	c.(3139-3141)CAT>CGT	p.H1047R		NM_006218	NP_006209
SORCS2	57537	broad.mit.edu	37	4	7708230	7708230	+	Intron	SNP	C	T	T			2012-706:2012-1311-T	g.chr4:7708230C>T	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
TET2	54790	broad.mit.edu	37	4	106180951	106180951	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr4:106180951T>C	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron	NM_001127208	NP_001120680
FAT4	79633	broad.mit.edu	37	4	126337733	126337733	+	Missense_Mutation	SNP	A	G	G			2012-706:2012-1311-T	g.chr4:126337733A>G	uc003ifj.3	+	6	6974	c.6974A>G	c.(6973-6975)GAA>GGA	p.E2325G	FAT4_uc011cgp.1_Missense_Mutation_p.E623G	NM_024582	NP_078858
SLC10A7	84068	broad.mit.edu	37	4	147207664	147207664	+	Intron	SNP	T	C	C	rs112152015		2012-706:2012-1311-T	g.chr4:147207664T>C	uc010ioz.2	-						SLC10A7_uc003ikr.2_Intron|SLC10A7_uc010ipa.2_Intron|SLC10A7_uc003iks.2_Intron	NM_001029998	NP_001025169
SLC12A7	10723	broad.mit.edu	37	5	1098353	1098353	+	Intron	SNP	A	G	G			2012-706:2012-1311-T	g.chr5:1098353A>G	uc003jbu.2	-							NM_006598	NP_006589
NRG2	9542	broad.mit.edu	37	5	139422644	139422644	+	Missense_Mutation	SNP	A	C	C			2012-706:2012-1311-T	g.chr5:139422644A>C	uc003lex.1	-	1	236	c.11T>G	c.(10-12)GTT>GGT	p.V4G	NRG2_uc003lev.1_Missense_Mutation_p.V4G|NRG2_uc003lew.1_Missense_Mutation_p.V4G|NRG2_uc003ley.1_Missense_Mutation_p.V4G	NM_004883	NP_004874
EBF1	1879	broad.mit.edu	37	5	158527089	158527089	+	5'Flank	SNP	C	A	A			2012-706:2012-1311-T	g.chr5:158527089C>A	uc010jip.2	-						EBF1_uc011ddx.1_5'Flank|EBF1_uc003lxl.3_5'Flank|uc003lxm.1_5'Flank	NM_024007	NP_076870
SMOC2	64094	broad.mit.edu	37	6	169015580	169015580	+	Intron	SNP	C	T	T			2012-706:2012-1311-T	g.chr6:169015580C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169016316	169016316	+	Intron	SNP	C	T	T	rs66476867		2012-706:2012-1311-T	g.chr6:169016316C>T	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169016335	169016335	+	Intron	SNP	A	G	G			2012-706:2012-1311-T	g.chr6:169016335A>G	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
PRKAR1B	5575	broad.mit.edu	37	7	638253	638253	+	Intron	SNP	A	C	C			2012-706:2012-1311-T	g.chr7:638253A>C	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
PRKAR1B	5575	broad.mit.edu	37	7	723843	723843	+	Intron	SNP	A	C	C			2012-706:2012-1311-T	g.chr7:723843A>C	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron	NM_002735	NP_002726
IQCE	23288	broad.mit.edu	37	7	2635477	2635477	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr7:2635477T>C	uc003smo.3	+						IQCE_uc010ksm.1_Intron|IQCE_uc003sml.1_Intron|IQCE_uc011jvy.1_Intron|IQCE_uc011jvz.1_Intron|IQCE_uc003smk.3_Intron|IQCE_uc003smn.3_Intron	NM_152558	NP_689771
IQCE	23288	broad.mit.edu	37	7	2635491	2635491	+	Intron	SNP	A	G	G			2012-706:2012-1311-T	g.chr7:2635491A>G	uc003smo.3	+						IQCE_uc010ksm.1_Intron|IQCE_uc003sml.1_Intron|IQCE_uc011jvy.1_Intron|IQCE_uc011jvz.1_Intron|IQCE_uc003smk.3_Intron|IQCE_uc003smn.3_Intron	NM_152558	NP_689771
EGFR	1956	broad.mit.edu	37	7	55225381	55225381	+	Silent	SNP	T	G	G			2012-706:2012-1311-T	g.chr7:55225381T>G	uc003tqk.2	+	11	1479	c.1233T>G	c.(1231-1233)CCT>CCG	p.P411P	EGFR_uc003tqi.2_Silent_p.P411P|EGFR_uc003tqj.2_Silent_p.P411P|EGFR_uc010kzg.1_Silent_p.P366P|EGFR_uc011kco.1_Silent_p.P358P|EGFR_uc011kcp.1_RNA|EGFR_uc011kcq.1_RNA	NM_005228	NP_005219
ZNF804B	219578	broad.mit.edu	37	7	88963390	88963390	+	Missense_Mutation	SNP	C	A	A			2012-706:2012-1311-T	g.chr7:88963390C>A	uc011khi.1	+	4	1632	c.1094C>A	c.(1093-1095)GCT>GAT	p.A365D		NM_181646	NP_857597
PIK3CG	5294	broad.mit.edu	37	7	106508274	106508274	+	Missense_Mutation	SNP	C	T	T			2012-706:2012-1311-T	g.chr7:106508274C>T	uc003vdv.3	+	2	353	c.268C>T	c.(268-270)CGG>TGG	p.R90W	PIK3CG_uc003vdu.2_Missense_Mutation_p.R90W|PIK3CG_uc003vdw.2_Missense_Mutation_p.R90W	NM_002649	NP_002640
PTPRN2	5799	broad.mit.edu	37	7	157373773	157373773	+	Intron	SNP	G	C	C			2012-706:2012-1311-T	g.chr7:157373773G>C	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157852051	157852051	+	Intron	SNP	G	A	A			2012-706:2012-1311-T	g.chr7:157852051G>A	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
DLGAP2	9228	broad.mit.edu	37	8	1643529	1643529	+	Intron	SNP	A	T	T			2012-706:2012-1311-T	g.chr8:1643529A>T	uc003wpl.2	+						DLGAP2_uc003wpm.2_Intron	NM_004745	NP_004736
SOX7	83595	broad.mit.edu	37	8	10625241	10625241	+	Intron	SNP	A	G	G	rs9650658	by1000genomes	2012-706:2012-1311-T	g.chr8:10625241A>G	uc011kwz.1	-						PINX1_uc003wth.2_Intron|PINX1_uc003wti.2_Intron	NM_031439	NP_113627
ZNF395	55893	broad.mit.edu	37	8	28259119	28259119	+	Intron	SNP	C	G	G			2012-706:2012-1311-T	g.chr8:28259119C>G	uc003xgt.2	-							NM_018660	NP_061130
SLCO5A1	81796	broad.mit.edu	37	8	70747134	70747134	+	5'UTR	SNP	A	G	G			2012-706:2012-1311-T	g.chr8:70747134A>G	uc003xyl.2	-	1					SLCO5A1_uc010lzb.2_5'Flank|SLCO5A1_uc011lfa.1_5'Flank|SLCO5A1_uc003xyk.2_5'Flank|SLCO5A1_uc010lzc.2_5'Flank	NM_030958	NP_112220
RIMS2	9699	broad.mit.edu	37	8	104513311	104513311	+	Intron	SNP	T	C	C			2012-706:2012-1311-T	g.chr8:104513311T>C	uc003ylp.2	+							NM_001100117	NP_001093587
PKHD1L1	93035	broad.mit.edu	37	8	110474217	110474217	+	Intron	SNP	T	A	A			2012-706:2012-1311-T	g.chr8:110474217T>A	uc003yne.2	+							NM_177531	NP_803875
TRAPPC9	83696	broad.mit.edu	37	8	140769146	140769146	+	Intron	SNP	G	A	A			2012-706:2012-1311-T	g.chr8:140769146G>A	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron	NM_001160372	NP_001153844
TOP1MT	116447	broad.mit.edu	37	8	144405347	144405347	+	Intron	SNP	G	C	C			2012-706:2012-1311-T	g.chr8:144405347G>C	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
ADCK5	203054	broad.mit.edu	37	8	145596648	145596648	+	5'Flank	SNP	T	G	G			2012-706:2012-1311-T	g.chr8:145596648T>G	uc003zch.2	+						ADCK5_uc003zcg.2_5'Flank	NM_174922	NP_777582
ARHGAP39	80728	broad.mit.edu	37	8	145912457	145912457	+	5'Flank	SNP	C	T	T			2012-706:2012-1311-T	g.chr8:145912457C>T	uc011llk.1	-							NM_025251	NP_079527
CDKN2A	1029	broad.mit.edu	37	9	21971029	21971029	+	Nonsense_Mutation	SNP	C	T	T			2012-706:2012-1311-T	g.chr9:21971029C>T	uc003zpk.2	-	2	541	c.329G>A	c.(328-330)TGG>TAG	p.W110*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.L165L	NM_000077	NP_000068
CDKN2A	1029	broad.mit.edu	37	9	21974753	21974753	+	Missense_Mutation	SNP	A	C	C			2012-706:2012-1311-T	g.chr9:21974753A>C	uc003zpk.2	-	1	286	c.74T>G	c.(73-75)GTA>GGA	p.V25G	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Missense_Mutation_p.V25G|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068
COL11A1	1301	broad.mit.edu	37	1	103354450	103354450	+	Frame_Shift_Del	DEL	A	-	-			2011-2255:2012-373-T	g.chr1:103354450delA	uc001dul.2	-	60	4808	c.4490delT	c.(4489-4491)TTAfs	p.L1497fs	COL11A1_uc001duk.2_Frame_Shift_Del_p.L693fs|COL11A1_uc001dum.2_Frame_Shift_Del_p.L1509fs|COL11A1_uc001dun.2_Frame_Shift_Del_p.L1458fs|COL11A1_uc009weh.2_Frame_Shift_Del_p.L1381fs	NM_001854	NP_001845
FMN2	56776	broad.mit.edu	37	1	240348248	240348249	+	Intron	INS	-	C	C	rs150876511	by1000genomes	2011-2255:2012-373-T	g.chr1:240348248_240348249insC	uc010pyd.1	+						FMN2_uc010pye.1_Intron	NM_020066	NP_064450
JAKMIP3	282973	broad.mit.edu	37	10	133973923	133973924	+	Intron	INS	-	G	G			2011-2255:2012-373-T	g.chr10:133973923_133973924insG	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
SIGIRR	59307	broad.mit.edu	37	11	413688	413688	+	Intron	DEL	T	-	-			2011-2255:2012-373-T	g.chr11:413688delT	uc001lpd.2	-						SIGIRR_uc001lpf.2_Intron|SIGIRR_uc001lpe.1_Intron	NM_001135054	NP_001128526
ATM	472	broad.mit.edu	37	11	108198249	108198250	+	Intron	INS	-	T	T			2011-2255:2012-373-T	g.chr11:108198249_108198250insT	uc001pkb.1	+						ATM_uc009yxr.1_Intron|C11orf65_uc010rvx.1_Intron|ATM_uc001pke.1_Intron|ATM_uc001pkg.1_Intron	NM_000051	NP_000042
TMEM120B	144404	broad.mit.edu	37	12	122185990	122185991	+	Intron	DEL	CA	-	-	rs72024648;rs67603870		2011-2255:2012-373-T	g.chr12:122185990_122185991delCA	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
ATP11A	23250	broad.mit.edu	37	13	113482426	113482427	+	Intron	INS	-	A	A	rs11374222		2011-2255:2012-373-T	g.chr13:113482426_113482427insA	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc001vsm.1_Intron	NM_015205	NP_056020
RPTOR	57521	broad.mit.edu	37	17	78608346	78608347	+	Intron	INS	-	GC	GC			2011-2255:2012-373-T	g.chr17:78608346_78608347insGC	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
SBNO2	22904	broad.mit.edu	37	19	1164822	1164822	+	Intron	DEL	G	-	-			2011-2255:2012-373-T	g.chr19:1164822delG	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
RMND5A	64795	broad.mit.edu	37	2	87623776	87623776	+	Intron	DEL	A	-	-			2011-2255:2012-373-T	g.chr2:87623776delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87646437	87646437	+	Intron	DEL	A	-	-			2011-2255:2012-373-T	g.chr2:87646437delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87719726	87719726	+	Intron	DEL	C	-	-			2011-2255:2012-373-T	g.chr2:87719726delC	uc002srs.3	+								
SNPH	9751	broad.mit.edu	37	20	1258548	1258549	+	Intron	DEL	TG	-	-			2011-2255:2012-373-T	g.chr20:1258548_1258549delTG	uc002wes.2	+						SNPH_uc002wet.2_Intron	NM_014723	NP_055538
HNF4A	3172	broad.mit.edu	37	20	43033747	43033748	+	Intron	INS	-	A	A			2011-2255:2012-373-T	g.chr20:43033747_43033748insA	uc002xma.2	+						HNF4A_uc010zwo.1_Intron|HNF4A_uc002xlt.2_Intron|HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Intron|uc002xlw.1_5'Flank|HNF4A_uc002xly.2_Intron|HNF4A_uc002xlz.2_Intron|HNF4A_uc010ggq.2_Intron	NM_000457	NP_000448
HNF4A	3172	broad.mit.edu	37	20	43033748	43033749	+	Intron	INS	-	T	T			2011-2255:2012-373-T	g.chr20:43033748_43033749insT	uc002xma.2	+						HNF4A_uc010zwo.1_Intron|HNF4A_uc002xlt.2_Intron|HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Intron|uc002xlw.1_5'Flank|HNF4A_uc002xly.2_Intron|HNF4A_uc002xlz.2_Intron|HNF4A_uc010ggq.2_Intron	NM_000457	NP_000448
FAM83F	113828	broad.mit.edu	37	22	40403418	40403420	+	Intron	DEL	CTG	-	-	rs115820465	by1000genomes	2011-2255:2012-373-T	g.chr22:40403418_40403420delCTG	uc003ayk.1	+							NM_138435	NP_612444
MPPED1	758	broad.mit.edu	37	22	43828536	43828539	+	Intron	DEL	ATAA	-	-	rs117522641	by1000genomes	2011-2255:2012-373-T	g.chr22:43828536_43828539delATAA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
MPPED1	758	broad.mit.edu	37	22	43828543	43828544	+	Intron	INS	-	A	A			2011-2255:2012-373-T	g.chr22:43828543_43828544insA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
FAM19A5	25817	broad.mit.edu	37	22	49074857	49074857	+	Intron	DEL	A	-	-			2011-2255:2012-373-T	g.chr22:49074857delA	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
FAM19A5	25817	broad.mit.edu	37	22	49074859	49074865	+	Intron	DEL	CTCCCCC	-	-	rs147283505	by1000genomes	2011-2255:2012-373-T	g.chr22:49074859_49074865delCTCCCCC	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
CHCHD6	84303	broad.mit.edu	37	3	126581270	126581272	+	Intron	DEL	CCT	-	-			2011-2255:2012-373-T	g.chr3:126581270_126581272delCCT	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
HERC3	8916	broad.mit.edu	37	4	89620124	89620125	+	Intron	INS	-	C	C	rs137990789;rs66939344	by1000genomes	2011-2255:2012-373-T	g.chr4:89620124_89620125insC	uc003hrw.1	+						HERC3_uc011cdn.1_Intron|HERC3_uc011cdo.1_Intron|NAP1L5_uc003hrx.2_5'Flank	NM_014606	NP_055421
CEP72	55722	broad.mit.edu	37	5	650334	650335	+	Intron	DEL	TG	-	-			2011-2255:2012-373-T	g.chr5:650334_650335delTG	uc003jbf.2	+							NM_018140	NP_060610
UNC5A	90249	broad.mit.edu	37	5	176299551	176299551	+	Intron	DEL	G	-	-	rs58614182		2011-2255:2012-373-T	g.chr5:176299551delG	uc003mey.2	+						UNC5A_uc010jkg.1_Intron	NM_133369	NP_588610
MAD1L1	8379	broad.mit.edu	37	7	2035906	2035906	+	Intron	DEL	C	-	-	rs68072290		2011-2255:2012-373-T	g.chr7:2035906delC	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
PTPRN2	5799	broad.mit.edu	37	7	157878336	157878337	+	Intron	DEL	AG	-	-			2011-2255:2012-373-T	g.chr7:157878336_157878337delAG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
SEMA4D	10507	broad.mit.edu	37	9	92038703	92038712	+	Intron	DEL	TGCCTCCCCT	-	-			2011-2255:2012-373-T	g.chr9:92038703_92038712delTGCCTCCCCT	uc004aqo.1	-						SEMA4D_uc011ltm.1_Intron|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Intron	NM_006378	NP_006369
TTF1	7270	broad.mit.edu	37	9	135252932	135252933	+	Intron	DEL	GT	-	-			2011-2255:2012-373-T	g.chr9:135252932_135252933delGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
NOTCH1	4851	broad.mit.edu	37	9	139403455	139403455	+	Frame_Shift_Del	DEL	A	-	-			2011-2255:2012-373-T	g.chr9:139403455delA	uc004chz.2	-	19	3038	c.3038delT	c.(3037-3039)TTCfs	p.F1013fs	NOTCH1_uc004cia.1_Frame_Shift_Del_p.F243fs	NM_017617	NP_060087
EHMT1	79813	broad.mit.edu	37	9	140615677	140615677	+	Intron	DEL	C	-	-			2011-2255:2012-373-T	g.chr9:140615677delC	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
DIP2C	22982	broad.mit.edu	37	10	578482	578483	+	Intron	INS	-	GA	GA	rs149618724;rs34964227		2011-2257:2012-329-T	g.chr10:578482_578483insGA	uc001ifp.2	-							NM_014974	NP_055789
IDI1	3422	broad.mit.edu	37	10	1093430	1093436	+	Intron	DEL	ACTGTCT	-	-			2011-2257:2012-329-T	g.chr10:1093430_1093436delACTGTCT	uc001iga.2	-						IDI1_uc001ifz.2_5'Flank|IDI1_uc001igb.2_Intron|IDI1_uc001igc.2_Intron|uc001igd.2_5'Flank	NM_004508	NP_004499
CACNA1C	775	broad.mit.edu	37	12	2546971	2546973	+	Intron	DEL	TGA	-	-			2011-2257:2012-329-T	g.chr12:2546971_2546973delTGA	uc009zdu.1	+						CACNA1C_uc009zdv.1_Intron|CACNA1C_uc001qkb.2_Intron|CACNA1C_uc001qkc.2_Intron|CACNA1C_uc001qke.2_Intron|CACNA1C_uc001qkf.2_Intron|CACNA1C_uc001qjz.2_Intron|CACNA1C_uc001qkd.2_Intron|CACNA1C_uc001qkg.2_Intron|CACNA1C_uc009zdw.1_Intron|CACNA1C_uc001qkh.2_Intron|CACNA1C_uc001qkl.2_Intron|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Intron|CACNA1C_uc001qkp.2_Intron|CACNA1C_uc001qkr.2_Intron|CACNA1C_uc001qku.2_Intron|CACNA1C_uc001qkq.2_Intron|CACNA1C_uc001qks.2_Intron|CACNA1C_uc001qkt.2_Intron|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Intron|CACNA1C_uc001qkj.1_Intron|CACNA1C_uc001qkk.1_Intron|CACNA1C_uc001qkm.1_Intron	NM_199460	NP_955630
TMEM132B	114795	broad.mit.edu	37	12	125894186	125894187	+	Intron	INS	-	T	T	rs67331620;rs149632537		2011-2257:2012-329-T	g.chr12:125894186_125894187insT	uc001uhe.1	+							NM_052907	NP_443139
ATP12A	479	broad.mit.edu	37	13	25256475	25256476	+	Intron	DEL	GT	-	-			2011-2257:2012-329-T	g.chr13:25256475_25256476delGT	uc001upp.2	+						ATP12A_uc010aaa.2_Intron	NM_001676	NP_001667
GPC5	2262	broad.mit.edu	37	13	92050908	92050913	+	5'Flank	DEL	GGCGGA	-	-	rs67775819		2011-2257:2012-329-T	g.chr13:92050908_92050913delGGCGGA	uc010tif.1	+							NM_004466	NP_004457
MCF2L	23263	broad.mit.edu	37	13	113683202	113683203	+	Intron	DEL	GT	-	-			2011-2257:2012-329-T	g.chr13:113683202_113683203delGT	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron	NM_001112732	NP_001106203
EIF3CL	728689	broad.mit.edu	37	16	28739818	28739819	+	Intron	DEL	GT	-	-			2011-2257:2012-329-T	g.chr16:28739818_28739819delGT	uc010byj.2	+						uc010vct.1_Intron|EIF3CL_uc010byi.2_Intron|EIF3CL_uc002dqs.3_Intron|EIF3C_uc002dqt.3_Intron|EIF3CL_uc010vcy.1_Intron|EIF3C_uc002dqu.3_Intron|EIF3CL_uc002dqv.3_Intron	NM_001099661	NP_001093131
NLRC5	84166	broad.mit.edu	37	16	57104775	57104776	+	Intron	INS	-	GT	GT			2011-2257:2012-329-T	g.chr16:57104775_57104776insGT	uc002ekk.1	+						NLRC5_uc010ccr.1_Intron|NLRC5_uc010ccs.1_Intron|NLRC5_uc002eko.1_Intron|NLRC5_uc002ekq.1_Intron|NLRC5_uc002ekr.1_Intron	NM_032206	NP_115582
DPEP1	1800	broad.mit.edu	37	16	89701172	89701172	+	Intron	DEL	T	-	-	rs138456393		2011-2257:2012-329-T	g.chr16:89701172delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
PIAS4	51588	broad.mit.edu	37	19	4035757	4035764	+	Intron	DEL	CACACACC	-	-	rs112609500		2011-2257:2012-329-T	g.chr19:4035757_4035764delCACACACC	uc002lzg.2	+							NM_015897	NP_056981
GP6	51206	broad.mit.edu	37	19	55535685	55535686	+	Intron	DEL	CA	-	-	rs72485414		2011-2257:2012-329-T	g.chr19:55535685_55535686delCA	uc002qik.2	-						GP6_uc002qil.2_Intron|GP6_uc010esq.2_Intron	NM_016363	NP_057447
PXDN	7837	broad.mit.edu	37	2	1723984	1723985	+	Intron	INS	-	GAGAGAGAGG	GAGAGAGAGG			2011-2257:2012-329-T	g.chr2:1723984_1723985insGAGAGAGAGG	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
MLPH	79083	broad.mit.edu	37	2	238452651	238452652	+	Intron	INS	-	A	A			2011-2257:2012-329-T	g.chr2:238452651_238452652insA	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
BAGE2	85319	broad.mit.edu	37	21	11043037	11043039	+	Intron	DEL	TGC	-	-	rs149525628;rs60709265		2011-2257:2012-329-T	g.chr21:11043037_11043039delTGC	uc002yit.1	-							NM_182482	NP_872288
STK10	6793	broad.mit.edu	37	5	171503281	171503282	+	Intron	INS	-	T	T			2011-2257:2012-329-T	g.chr5:171503281_171503282insT	uc003mbo.1	-							NM_005990	NP_005981
HMP19	51617	broad.mit.edu	37	5	173524635	173524636	+	Intron	DEL	TG	-	-			2011-2257:2012-329-T	g.chr5:173524635_173524636delTG	uc003mcx.2	+						HMP19_uc011dfh.1_Intron	NM_015980	NP_057064
RAPGEF1	2889	broad.mit.edu	37	9	134462527	134462530	+	Intron	DEL	ACAC	-	-			2011-2257:2012-329-T	g.chr9:134462527_134462530delACAC	uc004cbc.2	-						RAPGEF1_uc004cbb.2_Intron	NM_005312	NP_005303
KCNT1	57582	broad.mit.edu	37	9	138666290	138666291	+	Intron	INS	-	GT	GT	rs72103332		2011-2257:2012-329-T	g.chr9:138666290_138666291insGT	uc011mdq.1	+						KCNT1_uc011mdr.1_Intron|KCNT1_uc010nbf.2_Intron|KCNT1_uc004cgo.1_Intron	NM_020822	NP_065873
EXD3	54932	broad.mit.edu	37	9	140249951	140249952	+	Intron	INS	-	G	G	rs143208480		2011-2257:2012-329-T	g.chr9:140249951_140249952insG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
IL3RA	3563	broad.mit.edu	37	X	1479913	1479914	+	Intron	DEL	TG	-	-			2011-2257:2012-329-T	g.chrX:1479913_1479914delTG	uc004cps.2	+						IL3RA_uc011mhd.1_Intron	NM_002183	NP_002174
PDE4DIP	9659	broad.mit.edu	37	1	144871804	144871806	+	In_Frame_Del	DEL	GCA	-	-	rs143672177		2011-2259:2012-1326-T	g.chr1:144871804_144871806delGCA	uc001elw.3	-	32	5447_5449	c.5156_5158delTGC	c.(5155-5160)CTGCCT>CCT	p.L1719del	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001elv.3_In_Frame_Del_p.L726del	NM_014644	NP_055459
SHANK2	22941	broad.mit.edu	37	11	70633756	70633758	+	Intron	DEL	CAC	-	-			2011-2259:2012-1326-T	g.chr11:70633756_70633758delCAC	uc001oqc.2	-							NM_012309	NP_036441
CACNG7	59284	broad.mit.edu	37	19	54425049	54425049	+	Intron	DEL	T	-	-			2011-2259:2012-1326-T	g.chr19:54425049delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
AGAP1	116987	broad.mit.edu	37	2	236711374	236711375	+	Intron	INS	-	TGA	TGA			2011-2259:2012-1326-T	g.chr2:236711374_236711375insTGA	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
MPPED1	758	broad.mit.edu	37	22	43828758	43828759	+	Intron	INS	-	AA	AA			2011-2259:2012-1326-T	g.chr22:43828758_43828759insAA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45197085	45197086	+	Intron	INS	-	G	G			2011-2259:2012-1326-T	g.chr22:45197085_45197086insG	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
SLC9A3	6550	broad.mit.edu	37	5	487624	487628	+	Intron	DEL	GTGAT	-	-			2011-2259:2012-1326-T	g.chr5:487624_487628delGTGAT	uc003jbe.2	-						SLC9A3_uc011clx.1_Intron	NM_004174	NP_004165
SLC9A3	6550	broad.mit.edu	37	5	487630	487632	+	Intron	DEL	CAG	-	-	rs112087391		2011-2259:2012-1326-T	g.chr5:487630_487632delCAG	uc003jbe.2	-						SLC9A3_uc011clx.1_Intron	NM_004174	NP_004165
SHOX	6473	broad.mit.edu	37	X	583559	583560	+	5'Flank	INS	-	AG	AG			2011-2259:2012-1326-T	g.chrX:583559_583560insAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
PRKCZ	5590	broad.mit.edu	37	1	2086882	2086884	+	Intron	DEL	TGA	-	-			2011-2260:2012-1319-T	g.chr1:2086882_2086884delTGA	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron|PRKCZ_uc009vla.2_Intron|PRKCZ_uc010nyx.1_Intron|PRKCZ_uc009vlb.2_Intron	NM_002744	NP_002735
LGR6	59352	broad.mit.edu	37	1	202173671	202173672	+	Intron	INS	-	AC	AC	rs142174158	by1000genomes	2011-2260:2012-1319-T	g.chr1:202173671_202173672insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
PZP	5858	broad.mit.edu	37	12	9313518	9313518	+	Intron	DEL	T	-	-	rs7972015	by1000genomes	2011-2260:2012-1319-T	g.chr12:9313518delT	uc001qvl.2	-						PZP_uc009zgl.2_Intron|PZP_uc010sgo.1_Intron	NM_002864	NP_002855
EPS8	2059	broad.mit.edu	37	12	15776224	15776224	+	Intron	DEL	A	-	-			2011-2260:2012-1319-T	g.chr12:15776224delA	uc009zif.2	-						EPS8_uc001rdb.2_Intron|EPS8_uc009zig.2_Intron|EPS8_uc010shv.1_Intron	NM_004447	NP_004438
ERBB3	2065	broad.mit.edu	37	12	56492739	56492740	+	Intron	INS	-	T	T			2011-2260:2012-1319-T	g.chr12:56492739_56492740insT	uc001sjh.2	+						ERBB3_uc009zoj.2_Intron|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Intron|ERBB3_uc009zok.2_Intron|ERBB3_uc001sjk.2_Intron|ERBB3_uc001sjl.2_Intron	NM_001982	NP_001973
GRK1	6011	broad.mit.edu	37	13	114430917	114430919	+	Intron	DEL	GAG	-	-			2011-2260:2012-1319-T	g.chr13:114430917_114430919delGAG	uc010tkf.1	+							NM_002929	NP_002920
SYNE2	23224	broad.mit.edu	37	14	64685826	64685827	+	Intron	INS	-	TG	TG	rs33992127		2011-2260:2012-1319-T	g.chr14:64685826_64685827insTG	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_Intron|SYNE2_uc010tsi.1_Intron|SYNE2_uc001xgs.2_Intron|SYNE2_uc001xgt.2_Intron	NM_015180	NP_055995
KIAA0284	283638	broad.mit.edu	37	14	105338675	105338676	+	Intron	INS	-	C	C			2011-2260:2012-1319-T	g.chr14:105338675_105338676insC	uc010axb.2	+						INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Intron	NM_001112726	NP_001106197
KIAA0284	283638	broad.mit.edu	37	14	105338684	105338685	+	Intron	INS	-	GCC	GCC			2011-2260:2012-1319-T	g.chr14:105338684_105338685insGCC	uc010axb.2	+						INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Intron	NM_001112726	NP_001106197
KIAA0284	283638	broad.mit.edu	37	14	105338695	105338697	+	Intron	DEL	GCC	-	-			2011-2260:2012-1319-T	g.chr14:105338695_105338697delGCC	uc010axb.2	+						INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Intron	NM_001112726	NP_001106197
LMF1	64788	broad.mit.edu	37	16	908566	908567	+	Intron	INS	-	C	C			2011-2260:2012-1319-T	g.chr16:908566_908567insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908589	908590	+	Intron	INS	-	C	C			2011-2260:2012-1319-T	g.chr16:908589_908590insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908845	908846	+	Intron	INS	-	C	C			2011-2260:2012-1319-T	g.chr16:908845_908846insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908897	908898	+	Intron	DEL	GT	-	-			2011-2260:2012-1319-T	g.chr16:908897_908898delGT	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
ATP9B	374868	broad.mit.edu	37	18	77005912	77005914	+	Intron	DEL	CTA	-	-	rs74214905		2011-2260:2012-1319-T	g.chr18:77005912_77005914delCTA	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmy.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
CNN2	1265	broad.mit.edu	37	19	1035161	1035162	+	Intron	INS	-	AC	AC	rs71696411		2011-2260:2012-1319-T	g.chr19:1035161_1035162insAC	uc002lqu.2	+						CNN2_uc002lqt.1_Intron|CNN2_uc010drz.1_Intron|CNN2_uc002lqv.2_Intron|CNN2_uc010xgb.1_Intron|CNN2_uc010xgc.1_Intron	NM_004368	NP_004359
PXDN	7837	broad.mit.edu	37	2	1715371	1715372	+	Intron	DEL	CT	-	-	rs72180694		2011-2260:2012-1319-T	g.chr2:1715371_1715372delCT	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87643612	87643613	+	Intron	INS	-	A	A			2011-2260:2012-1319-T	g.chr2:87643612_87643613insA	uc002srs.3	+								
KIF1A	547	broad.mit.edu	37	2	241720199	241720200	+	Intron	INS	-	CAGCTC	CAGCTC			2011-2260:2012-1319-T	g.chr2:241720199_241720200insCAGCTC	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
C20orf26	26074	broad.mit.edu	37	20	20338614	20338615	+	Intron	DEL	GT	-	-			2011-2260:2012-1319-T	g.chr20:20338614_20338615delGT	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
MKL1	57591	broad.mit.edu	37	22	40982908	40982910	+	Intron	DEL	TGC	-	-			2011-2260:2012-1319-T	g.chr22:40982908_40982910delTGC	uc003ayw.1	-						MKL1_uc010gye.1_Intron|MKL1_uc010gyf.1_Intron|MKL1_uc003ayy.1_Intron	NM_020831	NP_065882
FSTL5	56884	broad.mit.edu	37	4	163085748	163085749	+	5'Flank	INS	-	A	A	rs111750358;rs71858319		2011-2260:2012-1319-T	g.chr4:163085748_163085749insA	uc003iqh.2	-						FSTL5_uc003iqi.2_5'Flank|FSTL5_uc010iqv.2_5'Flank	NM_020116	NP_064501
FAT1	2195	broad.mit.edu	37	4	187540331	187540331	+	Frame_Shift_Del	DEL	C	-	-			2011-2260:2012-1319-T	g.chr4:187540331delC	uc003izf.2	-	10	7597	c.7409delG	c.(7408-7410)GGAfs	p.G2470fs		NM_005245	NP_005236
CEP72	55722	broad.mit.edu	37	5	648652	648653	+	Intron	INS	-	G	G	rs71781429		2011-2260:2012-1319-T	g.chr5:648652_648653insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649327	649327	+	Intron	DEL	G	-	-	rs72165424		2011-2260:2012-1319-T	g.chr5:649327delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649353	649354	+	Intron	INS	-	G	G			2011-2260:2012-1319-T	g.chr5:649353_649354insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649366	649366	+	Intron	DEL	T	-	-			2011-2260:2012-1319-T	g.chr5:649366delT	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649646	649646	+	Intron	DEL	G	-	-			2011-2260:2012-1319-T	g.chr5:649646delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650284	650285	+	Intron	INS	-	TG	TG			2011-2260:2012-1319-T	g.chr5:650284_650285insTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650292	650293	+	Intron	INS	-	G	G			2011-2260:2012-1319-T	g.chr5:650292_650293insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650295	650296	+	Intron	INS	-	TG	TG			2011-2260:2012-1319-T	g.chr5:650295_650296insTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650411	650412	+	Intron	INS	-	G	G			2011-2260:2012-1319-T	g.chr5:650411_650412insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650603	650603	+	Intron	DEL	G	-	-			2011-2260:2012-1319-T	g.chr5:650603delG	uc003jbf.2	+							NM_018140	NP_060610
RASA1	5921	broad.mit.edu	37	5	86629062	86629062	+	Intron	DEL	T	-	-			2011-2260:2012-1319-T	g.chr5:86629062delT	uc003kiw.2	+						RASA1_uc010jav.2_Intron|RASA1_uc003kix.2_Intron|RASA1_uc011ctv.1_Intron|RASA1_uc011ctw.1_Intron|RASA1_uc010jaw.2_Intron	NM_002890	NP_002881
RELN	5649	broad.mit.edu	37	7	103270630	103270630	+	Intron	DEL	A	-	-			2011-2260:2012-1319-T	g.chr7:103270630delA	uc003vca.2	-						RELN_uc010liz.2_Intron	NM_005045	NP_005036
PTPRN2	5799	broad.mit.edu	37	7	157337649	157337650	+	Intron	DEL	TG	-	-	rs145603735		2011-2260:2012-1319-T	g.chr7:157337649_157337650delTG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|PTPRN2_uc003wnn.2_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157863285	157863286	+	Intron	INS	-	CA	CA			2011-2260:2012-1319-T	g.chr7:157863285_157863286insCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
POMT1	10585	broad.mit.edu	37	9	134391531	134391534	+	Intron	DEL	CTAA	-	-			2011-2260:2012-1319-T	g.chr9:134391531_134391534delCTAA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391538	134391539	+	Intron	INS	-	G	G			2011-2260:2012-1319-T	g.chr9:134391538_134391539insG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391541	134391542	+	Intron	INS	-	G	G	rs111862656		2011-2260:2012-1319-T	g.chr9:134391541_134391542insG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
TTF1	7270	broad.mit.edu	37	9	135252932	135252933	+	Intron	DEL	GT	-	-			2011-2260:2012-1319-T	g.chr9:135252932_135252933delGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTF1	7270	broad.mit.edu	37	9	135252952	135252953	+	Intron	INS	-	GT	GT			2011-2260:2012-1319-T	g.chr9:135252952_135252953insGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
CAMTA1	23261	broad.mit.edu	37	1	7553394	7553395	+	Intron	INS	-	GCGCACAA	GCGCACAA	rs7551012	by1000genomes	2011-2262:2012-374-T	g.chr1:7553394_7553395insGCGCACAA	uc001aoi.2	+							NM_015215	NP_056030
KCNN3	3782	broad.mit.edu	37	1	154686446	154686446	+	Intron	DEL	A	-	-			2011-2262:2012-374-T	g.chr1:154686446delA	uc001ffp.2	-						KCNN3_uc001ffo.2_Intron	NM_002249	NP_002240
FAM20B	9917	broad.mit.edu	37	1	179010771	179010775	+	Intron	DEL	CCGTG	-	-			2011-2262:2012-374-T	g.chr1:179010771_179010775delCCGTG	uc001gmc.2	+							NM_014864	NP_055679
ADARB2	105	broad.mit.edu	37	10	1266184	1266186	+	Intron	DEL	TGG	-	-	rs112368012		2011-2262:2012-374-T	g.chr10:1266184_1266186delTGG	uc009xhq.2	-							NM_018702	NP_061172
ADARB2	105	broad.mit.edu	37	10	1282212	1282213	+	Intron	INS	-	C	C			2011-2262:2012-374-T	g.chr10:1282212_1282213insC	uc009xhq.2	-							NM_018702	NP_061172
CCDC6	8030	broad.mit.edu	37	10	61641743	61641744	+	Intron	INS	-	CC	CC			2011-2262:2012-374-T	g.chr10:61641743_61641744insCC	uc001jks.3	-							NM_005436	NP_005427
KCNC1	3746	broad.mit.edu	37	11	17785794	17785795	+	Intron	DEL	AC	-	-			2011-2262:2012-374-T	g.chr11:17785794_17785795delAC	uc001mnk.3	+						KCNC1_uc009yhc.1_Intron	NM_004976	NP_004967
GLI1	2735	broad.mit.edu	37	12	57853556	57853556	+	5'Flank	DEL	G	-	-	rs11301591		2011-2262:2012-374-T	g.chr12:57853556delG	uc001snx.2	+						GLI1_uc009zpp.2_5'Flank|GLI1_uc009zpq.2_5'Flank|GLI1_uc009zpr.1_5'Flank	NM_005269	NP_005260
ATP11A	23250	broad.mit.edu	37	13	113369779	113369780	+	Intron	INS	-	C	C	rs6577113;rs11415797		2011-2262:2012-374-T	g.chr13:113369779_113369780insC	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
RASA3	22821	broad.mit.edu	37	13	114778407	114778409	+	Intron	DEL	CTC	-	-	rs72314213		2011-2262:2012-374-T	g.chr13:114778407_114778409delCTC	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
RIN3	79890	broad.mit.edu	37	14	93106563	93106564	+	Intron	DEL	GC	-	-	rs61992593		2011-2262:2012-374-T	g.chr14:93106563_93106564delGC	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
ANKRD11	29123	broad.mit.edu	37	16	89356788	89356789	+	Intron	INS	-	A	A			2011-2262:2012-374-T	g.chr16:89356788_89356789insA	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fnb.1_Intron	NM_013275	NP_037407
DPEP1	1800	broad.mit.edu	37	16	89701093	89701093	+	Intron	DEL	T	-	-			2011-2262:2012-374-T	g.chr16:89701093delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701172	89701172	+	Intron	DEL	T	-	-	rs138456393		2011-2262:2012-374-T	g.chr16:89701172delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701177	89701178	+	Intron	INS	-	C	C			2011-2262:2012-374-T	g.chr16:89701177_89701178insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701242	89701243	+	Intron	INS	-	C	C			2011-2262:2012-374-T	g.chr16:89701242_89701243insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701258	89701259	+	Intron	INS	-	C	C			2011-2262:2012-374-T	g.chr16:89701258_89701259insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701321	89701321	+	Intron	DEL	C	-	-			2011-2262:2012-374-T	g.chr16:89701321delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
LRRC37B	114659	broad.mit.edu	37	17	30361825	30361826	+	Intron	INS	-	T	T			2011-2262:2012-374-T	g.chr17:30361825_30361826insT	uc002hgu.2	+						LRRC37B_uc010wbx.1_Intron|LRRC37B_uc010csu.2_Intron	NM_052888	NP_443120
SGCA	6442	broad.mit.edu	37	17	48244305	48244306	+	Intron	DEL	CA	-	-			2011-2262:2012-374-T	g.chr17:48244305_48244306delCA	uc002iqi.2	+						SGCA_uc010wmh.1_Intron|SGCA_uc002iqj.2_Intron|SGCA_uc010wmi.1_Intron	NM_000023	NP_000014
9-Sep	10801	broad.mit.edu	37	17	75481059	75481061	+	Intron	DEL	TGG	-	-			2011-2262:2012-374-T	g.chr17:75481059_75481061delTGG	uc002jts.3	+						SEPT9_uc010wtk.1_Intron|SEPT9_uc002jtt.3_Intron|SEPT9_uc002jtu.3_Intron|SEPT9_uc002jtv.2_Intron|SEPT9_uc002jtw.2_Intron|SEPT9_uc010wtl.1_Intron|SEPT9_uc002jty.3_Intron|SEPT9_uc010wtm.1_Intron|SEPT9_uc010wtn.1_Intron|SEPT9_uc010dhd.2_Intron	NM_001113491	NP_001106963
BAHCC1	57597	broad.mit.edu	37	17	79399287	79399288	+	Intron	INS	-	TGGTGGTGATAG	TGGTGGTGATAG			2011-2262:2012-374-T	g.chr17:79399287_79399288insTGGTGGTGATAG	uc002kaf.2	+							NM_001080519	NP_001073988
CACNG7	59284	broad.mit.edu	37	19	54425156	54425156	+	Intron	DEL	T	-	-			2011-2262:2012-374-T	g.chr19:54425156delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
CACNG7	59284	broad.mit.edu	37	19	54425467	54425468	+	Intron	INS	-	C	C			2011-2262:2012-374-T	g.chr19:54425467_54425468insC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
RMND5A	64795	broad.mit.edu	37	2	87656556	87656564	+	Intron	DEL	CAGCGAAGC	-	-	rs149239020	by1000genomes	2011-2262:2012-374-T	g.chr2:87656556_87656564delCAGCGAAGC	uc002srs.3	+								
LAMA5	3911	broad.mit.edu	37	20	60888969	60888970	+	Intron	DEL	GT	-	-			2011-2262:2012-374-T	g.chr20:60888969_60888970delGT	uc002ycq.2	-							NM_005560	NP_005551
LAMA5	3911	broad.mit.edu	37	20	60888977	60888978	+	Intron	DEL	GG	-	-			2011-2262:2012-374-T	g.chr20:60888977_60888978delGG	uc002ycq.2	-							NM_005560	NP_005551
TRPM2	7226	broad.mit.edu	37	21	45837559	45837560	+	Intron	DEL	TG	-	-			2011-2262:2012-374-T	g.chr21:45837559_45837560delTG	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron|uc011afe.1_Intron	NM_003307	NP_003298
ADARB1	104	broad.mit.edu	37	21	46529242	46529243	+	Intron	DEL	TA	-	-	rs140518083	by1000genomes	2011-2262:2012-374-T	g.chr21:46529242_46529243delTA	uc002zgy.2	+						ADARB1_uc002zgp.2_Intron|ADARB1_uc002zgr.2_Intron|ADARB1_uc002zgs.2_Intron|ADARB1_uc002zgw.2_Intron|ADARB1_uc002zgv.2_Intron|ADARB1_uc002zgt.2_Intron|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_Intron|ADARB1_uc002zgu.2_Intron	NM_015833	NP_056648
MPPED1	758	broad.mit.edu	37	22	43871430	43871431	+	Intron	INS	-	TGA	TGA			2011-2262:2012-374-T	g.chr22:43871430_43871431insTGA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
CNTN4	152330	broad.mit.edu	37	3	2232491	2232494	+	Intron	DEL	CACA	-	-			2011-2262:2012-374-T	g.chr3:2232491_2232494delCACA	uc003bpc.2	+						CNTN4_uc003bpb.1_Intron	NM_175607	NP_783200
DUSP7	1849	broad.mit.edu	37	3	52083738	52083738	+	3'UTR	DEL	G	-	-			2011-2262:2012-374-T	g.chr3:52083738delG	uc003dct.2	-	3						NM_001947	NP_001938
CACNA2D3	55799	broad.mit.edu	37	3	54751774	54751776	+	Intron	DEL	GTG	-	-			2011-2262:2012-374-T	g.chr3:54751774_54751776delGTG	uc003dhf.2	+						CACNA2D3_uc011beu.1_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron|CACNA2D3_uc010hmv.1_Intron	NM_018398	NP_060868
IGF2BP2	10644	broad.mit.edu	37	3	185383242	185383242	+	Intron	DEL	G	-	-			2011-2262:2012-374-T	g.chr3:185383242delG	uc003fpo.2	-						IGF2BP2_uc010hyi.2_Intron|IGF2BP2_uc010hyj.2_Intron|IGF2BP2_uc010hyk.2_Intron|IGF2BP2_uc010hyl.2_Intron|IGF2BP2_uc003fpp.2_Intron|IGF2BP2_uc003fpq.2_Intron	NM_006548	NP_006539
SORCS2	57537	broad.mit.edu	37	4	7726580	7726581	+	Intron	INS	-	TTA	TTA	rs147507704;rs76715460	by1000genomes	2011-2262:2012-374-T	g.chr4:7726580_7726581insTTA	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
BST1	683	broad.mit.edu	37	4	15705414	15705415	+	Intron	INS	-	GC	GC			2011-2262:2012-374-T	g.chr4:15705414_15705415insGC	uc003goh.3	+							NM_004334	NP_004325
PSMB1	5689	broad.mit.edu	37	6	170783995	170783995	+	Intron	DEL	C	-	-			2011-2262:2012-374-T	g.chr6:170783995delC	uc003qxq.2	-							NM_002793	
ADAP1	11033	broad.mit.edu	37	7	945113	945114	+	Intron	INS	-	A	A			2011-2262:2012-374-T	g.chr7:945113_945114insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946003	946004	+	Intron	INS	-	G	G	rs146541692		2011-2262:2012-374-T	g.chr7:946003_946004insG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
TXNDC3	51314	broad.mit.edu	37	7	37886983	37886984	+	5'Flank	INS	-	GAG	GAG	rs149290475	by1000genomes	2011-2262:2012-374-T	g.chr7:37886983_37886984insGAG	uc003tfn.2	+							NM_016616	NP_057700
RELN	5649	broad.mit.edu	37	7	103202406	103202407	+	Intron	INS	-	A	A	rs3056321;rs35800572		2011-2262:2012-374-T	g.chr7:103202406_103202407insA	uc003vca.2	-						RELN_uc010liz.2_Intron	NM_005045	NP_005036
PRKAG2	51422	broad.mit.edu	37	7	151367052	151367053	+	Intron	INS	-	CACA	CACA	rs141754917;rs150659196	by1000genomes	2011-2262:2012-374-T	g.chr7:151367052_151367053insCACA	uc003wkk.2	-						PRKAG2_uc011kvl.1_Intron|PRKAG2_uc003wkj.2_Intron|PRKAG2_uc010lqe.1_Intron	NM_016203	NP_057287
SCARA5	286133	broad.mit.edu	37	8	27776472	27776472	+	Intron	DEL	G	-	-			2011-2262:2012-374-T	g.chr8:27776472delG	uc003xgj.2	-						SCARA5_uc010luz.2_Intron|SCARA5_uc003xgk.2_Intron|SCARA5_uc003xgl.2_Intron	NM_173833	NP_776194
SCARA5	286133	broad.mit.edu	37	8	27776636	27776637	+	Intron	DEL	AG	-	-			2011-2262:2012-374-T	g.chr8:27776636_27776637delAG	uc003xgj.2	-						SCARA5_uc010luz.2_Intron|SCARA5_uc003xgk.2_Intron|SCARA5_uc003xgl.2_Intron	NM_173833	NP_776194
SCARA5	286133	broad.mit.edu	37	8	27776642	27776645	+	Intron	DEL	AAAA	-	-	rs113039317;rs143669479	by1000genomes;by1000genomes	2011-2262:2012-374-T	g.chr8:27776642_27776645delAAAA	uc003xgj.2	-						SCARA5_uc010luz.2_Intron|SCARA5_uc003xgk.2_Intron|SCARA5_uc003xgl.2_Intron	NM_173833	NP_776194
SCARA5	286133	broad.mit.edu	37	8	27776657	27776658	+	Intron	INS	-	G	G			2011-2262:2012-374-T	g.chr8:27776657_27776658insG	uc003xgj.2	-						SCARA5_uc010luz.2_Intron|SCARA5_uc003xgk.2_Intron|SCARA5_uc003xgl.2_Intron	NM_173833	NP_776194
HGSNAT	138050	broad.mit.edu	37	8	43050798	43050799	+	Intron	INS	-	AGA	AGA	rs144111342	by1000genomes	2011-2262:2012-374-T	g.chr8:43050798_43050799insAGA	uc003xpx.3	+							NM_152419	NP_689632
COL22A1	169044	broad.mit.edu	37	8	139817989	139817990	+	Intron	DEL	GT	-	-			2011-2262:2012-374-T	g.chr8:139817989_139817990delGT	uc003yvd.2	-							NM_152888	NP_690848
TOP1MT	116447	broad.mit.edu	37	8	144403605	144403606	+	Intron	DEL	CA	-	-			2011-2262:2012-374-T	g.chr8:144403605_144403606delCA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
ARHGAP39	80728	broad.mit.edu	37	8	145913178	145913179	+	5'Flank	INS	-	C	C	rs150497157	by1000genomes	2011-2262:2012-374-T	g.chr8:145913178_145913179insC	uc011llk.1	-							NM_025251	NP_079527
SEMA4D	10507	broad.mit.edu	37	9	91987028	91987029	+	Intron	INS	-	GTGT	GTGT	rs147774978	by1000genomes	2011-2262:2012-374-T	g.chr9:91987028_91987029insGTGT	uc011ltm.1	-						SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqm.2_5'Flank	NM_001142287	NP_001135759
EXD3	54932	broad.mit.edu	37	9	140223555	140223556	+	Intron	INS	-	A	A	rs138756545		2011-2262:2012-374-T	g.chr9:140223555_140223556insA	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
AGRN	375790	broad.mit.edu	37	1	966147	966148	+	Intron	INS	-	TGTG	TGTG	rs142523522		2011-2263:2012-1327-T	g.chr1:966147_966148insTGTG	uc001ack.1	+							NM_198576	NP_940978
C1orf159	54991	broad.mit.edu	37	1	1043829	1043830	+	Intron	INS	-	G	G	rs36161240	by1000genomes	2011-2263:2012-1327-T	g.chr1:1043829_1043830insG	uc001act.2	-						C1orf159_uc001acu.2_Intron|C1orf159_uc001acr.2_Intron|C1orf159_uc001acs.2_Intron|C1orf159_uc001acp.2_5'Flank	NM_017891	NP_060361
FAIM3	9214	broad.mit.edu	37	1	207097707	207097708	+	5'Flank	INS	-	GT	GT			2011-2263:2012-1327-T	g.chr1:207097707_207097708insGT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
VWA2	340706	broad.mit.edu	37	10	116043012	116043013	+	Intron	INS	-	CAGG	CAGG			2011-2263:2012-1327-T	g.chr10:116043012_116043013insCAGG	uc001lbl.1	+						VWA2_uc001lbk.1_Intron|VWA2_uc009xyf.1_Intron	NM_198496	NP_940898
TPCN2	219931	broad.mit.edu	37	11	68844730	68844737	+	Intron	DEL	CCTGCCCT	-	-	rs67907601		2011-2263:2012-1327-T	g.chr11:68844730_68844737delCCTGCCCT	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_Intron	NM_139075	NP_620714
ZDHHC20	253832	broad.mit.edu	37	13	21951748	21951749	+	Intron	DEL	CT	-	-	rs68104473		2011-2263:2012-1327-T	g.chr13:21951748_21951749delCT	uc001uob.2	-						ZDHHC20_uc001uod.2_Intron|ZDHHC20_uc001uoc.2_Intron|ZDHHC20_uc001uoe.2_Intron|ZDHHC20_uc010tcs.1_Intron	NM_153251	NP_694983
ATP11A	23250	broad.mit.edu	37	13	113433031	113433032	+	Intron	INS	-	GAG	GAG	rs10645187;rs67803605		2011-2263:2012-1327-T	g.chr13:113433031_113433032insGAG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
LMF1	64788	broad.mit.edu	37	16	907938	907939	+	Intron	INS	-	A	A			2011-2263:2012-1327-T	g.chr16:907938_907939insA	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908332	908333	+	Intron	INS	-	C	C			2011-2263:2012-1327-T	g.chr16:908332_908333insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
CMIP	80790	broad.mit.edu	37	16	81702452	81702455	+	Intron	DEL	CACT	-	-	rs77664242;rs148637067	by1000genomes	2011-2263:2012-1327-T	g.chr16:81702452_81702455delCACT	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
TP53	7157	broad.mit.edu	37	17	7577552	7577569	+	In_Frame_Del	DEL	CATGCAGGAACTGTTACA	-	-	rs121912655;rs28934573		2011-2263:2012-1327-T	g.chr17:7577552_7577569delCATGCAGGAACTGTTACA	uc002gim.2	-	7	906_923	c.712_729delTGTAACAGTTCCTGCATG	c.(712-729)TGTAACAGTTCCTGCATGdel	p.CNSSCM238del	TP53_uc002gig.1_In_Frame_Del_p.CNSSCM238del|TP53_uc002gih.2_In_Frame_Del_p.CNSSCM238del|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_In_Frame_Del_p.CNSSCM106del|TP53_uc010cng.1_In_Frame_Del_p.CNSSCM106del|TP53_uc002gii.1_In_Frame_Del_p.CNSSCM106del|TP53_uc010cnh.1_In_Frame_Del_p.CNSSCM238del|TP53_uc010cni.1_In_Frame_Del_p.CNSSCM238del|TP53_uc002gij.2_In_Frame_Del_p.CNSSCM238del|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_In_Frame_Del_p.CNSSCM145del|TP53_uc002gio.2_In_Frame_Del_p.CNSSCM106del	NM_001126112	NP_001119584
RPTOR	57521	broad.mit.edu	37	17	78904248	78904248	+	Intron	DEL	T	-	-	rs66536164		2011-2263:2012-1327-T	g.chr17:78904248delT	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
BAIAP2	10458	broad.mit.edu	37	17	79078806	79078807	+	Intron	INS	-	C	C			2011-2263:2012-1327-T	g.chr17:79078806_79078807insC	uc002jzg.2	+						BAIAP2_uc002jyz.3_Intron|BAIAP2_uc002jza.2_Intron|BAIAP2_uc002jzc.2_Intron|BAIAP2_uc002jzb.2_Intron|BAIAP2_uc002jzd.2_Intron|BAIAP2_uc002jzf.2_Intron|BAIAP2_uc002jze.2_Intron|BAIAP2_uc010wuh.1_Intron|BAIAP2_uc002jzh.2_Intron|BAIAP2_uc010wui.1_Intron	NM_017451	NP_059345
TYMS	7298	broad.mit.edu	37	18	667541	667541	+	Intron	DEL	T	-	-			2011-2263:2012-1327-T	g.chr18:667541delT	uc010dka.1	+						TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062
ZNF236	7776	broad.mit.edu	37	18	74679321	74679322	+	Intron	INS	-	GGT	GGT	rs142500877	by1000genomes	2011-2263:2012-1327-T	g.chr18:74679321_74679322insGGT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
ZNF236	7776	broad.mit.edu	37	18	74679353	74679353	+	Intron	DEL	T	-	-			2011-2263:2012-1327-T	g.chr18:74679353delT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
CACNG7	59284	broad.mit.edu	37	19	54427248	54427248	+	Intron	DEL	C	-	-			2011-2263:2012-1327-T	g.chr19:54427248delC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
U2AF2	11338	broad.mit.edu	37	19	56181835	56181835	+	Intron	DEL	G	-	-	rs146196962	by1000genomes	2011-2263:2012-1327-T	g.chr19:56181835delG	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
U2AF2	11338	broad.mit.edu	37	19	56181864	56181865	+	Intron	INS	-	C	C			2011-2263:2012-1327-T	g.chr19:56181864_56181865insC	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
DYSF	8291	broad.mit.edu	37	2	71845045	71845045	+	Intron	DEL	T	-	-			2011-2263:2012-1327-T	g.chr2:71845045delT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845626	71845627	+	Intron	DEL	TG	-	-			2011-2263:2012-1327-T	g.chr2:71845626_71845627delTG	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
RMND5A	64795	broad.mit.edu	37	2	87623776	87623776	+	Intron	DEL	A	-	-			2011-2263:2012-1327-T	g.chr2:87623776delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641749	87641750	+	Intron	INS	-	A	A	rs145264498		2011-2263:2012-1327-T	g.chr2:87641749_87641750insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643612	87643613	+	Intron	INS	-	A	A			2011-2263:2012-1327-T	g.chr2:87643612_87643613insA	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179634390	179634390	+	Intron	DEL	A	-	-	rs66507452		2011-2263:2012-1327-T	g.chr2:179634390delA	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002unb.2_Intron	NM_133378	NP_596869
TTN	7273	broad.mit.edu	37	2	179634392	179634392	+	Intron	DEL	A	-	-	rs13388274		2011-2263:2012-1327-T	g.chr2:179634392delA	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002unb.2_Intron	NM_133378	NP_596869
ATIC	471	broad.mit.edu	37	2	216176320	216176320	+	5'Flank	DEL	A	-	-			2011-2263:2012-1327-T	g.chr2:216176320delA	uc002vex.3	+						ATIC_uc010zjo.1_5'Flank|ATIC_uc002vey.3_5'Flank	NM_004044	NP_004035
COL6A3	1293	broad.mit.edu	37	2	238323051	238323051	+	5'Flank	DEL	A	-	-			2011-2263:2012-1327-T	g.chr2:238323051delA	uc002vwl.2	-						COL6A3_uc002vwo.2_5'Flank|COL6A3_uc010znj.1_5'Flank|COL6A3_uc002vwq.2_5'Flank|COL6A3_uc002vwr.2_5'Flank|COL6A3_uc010znk.1_5'Flank	NM_004369	NP_004360
C20orf26	26074	broad.mit.edu	37	20	20337114	20337115	+	Intron	INS	-	TG	TG			2011-2263:2012-1327-T	g.chr20:20337114_20337115insTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20338676	20338677	+	Intron	INS	-	GT	GT	rs113150957	by1000genomes	2011-2263:2012-1327-T	g.chr20:20338676_20338677insGT	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
RTEL1	51750	broad.mit.edu	37	20	62309932	62309933	+	Intron	INS	-	CT	CT			2011-2263:2012-1327-T	g.chr20:62309932_62309933insCT	uc002yfu.1	+						RTEL1_uc011abc.1_Intron|RTEL1_uc002yft.1_Intron|RTEL1_uc011abd.1_Intron|RTEL1_uc011abe.1_Intron|RTEL1_uc002yfw.2_Intron	NM_016434	NP_057518
AGPAT3	56894	broad.mit.edu	37	21	45378962	45378964	+	Intron	DEL	GTG	-	-			2011-2263:2012-1327-T	g.chr21:45378962_45378964delGTG	uc002zdv.2	+						AGPAT3_uc002zdw.2_Intron|AGPAT3_uc002zdx.2_Intron|AGPAT3_uc002zdy.2_5'Flank	NM_020132	NP_064517
AGPAT3	56894	broad.mit.edu	37	21	45395118	45395120	+	Intron	DEL	TGG	-	-	rs146827927;rs9981726		2011-2263:2012-1327-T	g.chr21:45395118_45395120delTGG	uc002zdv.2	+						AGPAT3_uc002zdw.2_Intron|AGPAT3_uc002zdx.2_Intron|AGPAT3_uc002zdy.2_Intron	NM_020132	NP_064517
ADARB1	104	broad.mit.edu	37	21	46553675	46553676	+	Intron	INS	-	AGT	AGT			2011-2263:2012-1327-T	g.chr21:46553675_46553676insAGT	uc002zgy.2	+						ADARB1_uc002zgp.2_Intron|ADARB1_uc002zgr.2_Intron|ADARB1_uc002zgs.2_Intron|ADARB1_uc002zgw.2_Intron|ADARB1_uc002zgv.2_Intron|ADARB1_uc002zgt.2_Intron|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_Intron|ADARB1_uc002zgu.2_Intron	NM_015833	NP_056648
PARVB	29780	broad.mit.edu	37	22	44550916	44550919	+	Intron	DEL	GTGT	-	-	rs909852;rs2401649;rs2401650		2011-2263:2012-1327-T	g.chr22:44550916_44550919delGTGT	uc003ben.2	+						PARVB_uc003bem.2_Intron|PARVB_uc010gzn.2_Intron|PARVB_uc003beo.2_Intron	NM_013327	NP_037459
CASR	846	broad.mit.edu	37	3	121902719	121902720	+	Intron	INS	-	A	A	rs67812934		2011-2263:2012-1327-T	g.chr3:121902719_121902720insA	uc003eev.3	+						CASR_uc003eew.3_5'Flank	NM_000388	NP_000379
BCL6	604	broad.mit.edu	37	3	187454383	187454386	+	5'Flank	DEL	AAAC	-	-			2011-2263:2012-1327-T	g.chr3:187454383_187454386delAAAC	uc003frp.3	-						BCL6_uc011bsf.1_5'Flank|BCL6_uc010hza.2_5'Flank|BCL6_uc003frq.1_Intron	NM_001130845	NP_001124317
KIAA1530	57654	broad.mit.edu	37	4	1342828	1342829	+	Intron	INS	-	C	C	rs141462094	by1000genomes	2011-2263:2012-1327-T	g.chr4:1342828_1342829insC	uc003gde.3	+							NM_020894	NP_065945
EVC2	132884	broad.mit.edu	37	4	5685565	5685568	+	Intron	DEL	ACAC	-	-			2011-2263:2012-1327-T	g.chr4:5685565_5685568delACAC	uc003gij.2	-						EVC2_uc011bwb.1_Intron|EVC2_uc003gik.2_Intron	NM_147127	NP_667338
SORCS2	57537	broad.mit.edu	37	4	7456767	7456768	+	Intron	DEL	TG	-	-			2011-2263:2012-1327-T	g.chr4:7456767_7456768delTG	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
TET2	54790	broad.mit.edu	37	4	106163110	106163111	+	Intron	DEL	TC	-	-	rs57665828;rs58713918;rs66726009		2011-2263:2012-1327-T	g.chr4:106163110_106163111delTC	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron|TET2_uc010ilp.1_3'UTR|TET2_uc003hxi.1_3'UTR	NM_001127208	NP_001120680
CEP72	55722	broad.mit.edu	37	5	649777	649778	+	Intron	INS	-	G	G			2011-2263:2012-1327-T	g.chr5:649777_649778insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650066	650067	+	Intron	INS	-	G	G			2011-2263:2012-1327-T	g.chr5:650066_650067insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650241	650241	+	Intron	DEL	G	-	-			2011-2263:2012-1327-T	g.chr5:650241delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650362	650363	+	Intron	DEL	TG	-	-			2011-2263:2012-1327-T	g.chr5:650362_650363delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650518	650519	+	Intron	INS	-	G	G			2011-2263:2012-1327-T	g.chr5:650518_650519insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650525	650526	+	Intron	INS	-	A	A			2011-2263:2012-1327-T	g.chr5:650525_650526insA	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650700	650705	+	Intron	DEL	TGTGGG	-	-			2011-2263:2012-1327-T	g.chr5:650700_650705delTGTGGG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650767	650768	+	Intron	INS	-	G	G			2011-2263:2012-1327-T	g.chr5:650767_650768insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650866	650867	+	Intron	DEL	TG	-	-			2011-2263:2012-1327-T	g.chr5:650866_650867delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651259	651260	+	Intron	INS	-	TG	TG	rs72148198		2011-2263:2012-1327-T	g.chr5:651259_651260insTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651413	651414	+	Intron	INS	-	G	G	rs71921749		2011-2263:2012-1327-T	g.chr5:651413_651414insG	uc003jbf.2	+							NM_018140	NP_060610
PIK3R1	5295	broad.mit.edu	37	5	67513456	67513457	+	Intron	INS	-	T	T	rs34687648;rs13186403	by1000genomes	2011-2263:2012-1327-T	g.chr5:67513456_67513457insT	uc003jva.2	+							NM_181523	NP_852664
RNF130	55819	broad.mit.edu	37	5	179442513	179442514	+	Intron	INS	-	G	G			2011-2263:2012-1327-T	g.chr5:179442513_179442514insG	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
BPHL	670	broad.mit.edu	37	6	3146132	3146133	+	Intron	INS	-	G	G			2011-2263:2012-1327-T	g.chr6:3146132_3146133insG	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
BPHL	670	broad.mit.edu	37	6	3146221	3146222	+	Intron	INS	-	G	G			2011-2263:2012-1327-T	g.chr6:3146221_3146222insG	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
HLA-G	3135	broad.mit.edu	37	6	29855265	29855266	+	Intron	DEL	CC	-	-	rs140569140;rs145355219		2011-2263:2012-1327-T	g.chr6:29855265_29855266delCC	uc011dmb.1	+						HLA-H_uc003nod.2_5'Flank|HLA-H_uc010jro.2_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29893622	29893626	+	Intron	DEL	AAAAC	-	-	rs67081368;rs28725110;rs140158039		2011-2263:2012-1327-T	g.chr6:29893622_29893626delAAAAC	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_5'Flank	NM_002127	NP_002118
HLA-B	3106	broad.mit.edu	37	6	31324851	31324852	+	Intron	INS	-	C	C	rs148300790	by1000genomes	2011-2263:2012-1327-T	g.chr6:31324851_31324852insC	uc003nth.2	-						HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_5'Flank|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_5'Flank|HLA-B_uc010jso.2_5'Flank	NM_005514	NP_005505
TAP1	6890	broad.mit.edu	37	6	32820695	32820696	+	Intron	INS	-	G	G	rs146655451	by1000genomes	2011-2263:2012-1327-T	g.chr6:32820695_32820696insG	uc003ocg.2	-						TAP1_uc011dqi.1_5'Flank|PSMB9_uc011dqj.1_5'Flank|PSMB9_uc003sga.2_5'Flank	NM_000593	NP_000584
MDGA1	266727	broad.mit.edu	37	6	37611883	37611884	+	Intron	INS	-	C	C			2011-2263:2012-1327-T	g.chr6:37611883_37611884insC	uc003onu.1	-						MDGA1_uc003onv.1_Intron	NM_153487	NP_705691
SMOC2	64094	broad.mit.edu	37	6	169016399	169016400	+	Intron	DEL	GG	-	-			2011-2263:2012-1327-T	g.chr6:169016399_169016400delGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
C7orf50	84310	broad.mit.edu	37	7	1056138	1056139	+	Intron	INS	-	GC	GC			2011-2263:2012-1327-T	g.chr7:1056138_1056139insGC	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
RPA3	6119	broad.mit.edu	37	7	7712941	7712942	+	Intron	INS	-	AGC	AGC	rs148595964;rs10527750	by1000genomes	2011-2263:2012-1327-T	g.chr7:7712941_7712942insAGC	uc003sri.2	-						uc011jxf.1_5'UTR	NM_002947	NP_002938
ETV1	2115	broad.mit.edu	37	7	14028861	14028861	+	Intron	DEL	A	-	-	rs11328804		2011-2263:2012-1327-T	g.chr7:14028861delA	uc011jxq.1	-						ETV1_uc011jxn.1_5'Flank|ETV1_uc011jxo.1_5'Flank|ETV1_uc011jxp.1_5'Flank|ETV1_uc003ssw.3_Intron|ETV1_uc003ssx.2_Intron|ETV1_uc011jxr.1_Intron|ETV1_uc011jxs.1_Intron	NM_004956	NP_004947
BAZ1B	9031	broad.mit.edu	37	7	72879899	72879899	+	Intron	DEL	A	-	-			2011-2263:2012-1327-T	g.chr7:72879899delA	uc003tyc.2	-							NM_032408	NP_115784
ZNF804B	219578	broad.mit.edu	37	7	88388374	88388374	+	5'Flank	DEL	C	-	-			2011-2263:2012-1327-T	g.chr7:88388374delC	uc011khi.1	+							NM_181646	NP_857597
PRKAG2	51422	broad.mit.edu	37	7	151552280	151552281	+	Intron	DEL	CA	-	-			2011-2263:2012-1327-T	g.chr7:151552280_151552281delCA	uc003wkk.2	-						PRKAG2_uc010lqe.1_Intron|PRKAG2_uc003wkm.1_Intron	NM_016203	NP_057287
PTPRN2	5799	broad.mit.edu	37	7	158317216	158317217	+	Intron	INS	-	GTC	GTC			2011-2263:2012-1327-T	g.chr7:158317216_158317217insGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
UBR5	51366	broad.mit.edu	37	8	103290953	103290953	+	Intron	DEL	A	-	-			2011-2263:2012-1327-T	g.chr8:103290953delA	uc003ykr.1	-						UBR5_uc003yks.1_Intron	NM_015902	NP_056986
PKHD1L1	93035	broad.mit.edu	37	8	110473965	110473966	+	Intron	INS	-	T	T	rs144083788;rs140313571	by1000genomes;by1000genomes	2011-2263:2012-1327-T	g.chr8:110473965_110473966insT	uc003yne.2	+							NM_177531	NP_803875
ZNF16	7564	broad.mit.edu	37	8	146172390	146172391	+	Intron	DEL	CT	-	-	rs66905525		2011-2263:2012-1327-T	g.chr8:146172390_146172391delCT	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
POMT1	10585	broad.mit.edu	37	9	134391317	134391317	+	Intron	DEL	G	-	-	rs75256542		2011-2263:2012-1327-T	g.chr9:134391317delG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391531	134391534	+	Intron	DEL	CTAA	-	-			2011-2263:2012-1327-T	g.chr9:134391531_134391534delCTAA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
MORN1	79906	broad.mit.edu	37	1	2258675	2258678	+	Intron	DEL	AAAC	-	-			2011-2264:2012-371-T	g.chr1:2258675_2258678delAAAC	uc001ajb.1	-							NM_024848	NP_079124
GLIS1	148979	broad.mit.edu	37	1	54021914	54021915	+	Intron	DEL	GT	-	-			2011-2264:2012-371-T	g.chr1:54021914_54021915delGT	uc001cvr.1	-							NM_147193	NP_671726
KIF26B	55083	broad.mit.edu	37	1	245627958	245627959	+	Intron	DEL	GT	-	-			2011-2264:2012-371-T	g.chr1:245627958_245627959delGT	uc001ibf.1	+						KIF26B_uc010pyq.1_Intron	NM_018012	NP_060482
JAKMIP3	282973	broad.mit.edu	37	10	133974000	133974000	+	Intron	DEL	G	-	-			2011-2264:2012-371-T	g.chr10:133974000delG	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
CHID1	66005	broad.mit.edu	37	11	897179	897179	+	Intron	DEL	A	-	-			2011-2264:2012-371-T	g.chr11:897179delA	uc001lsl.2	-						CHID1_uc010qwu.1_Intron|CHID1_uc010qwv.1_Intron|CHID1_uc001lsn.2_Intron|CHID1_uc001lsm.2_Intron|CHID1_uc001lso.2_Intron|CHID1_uc001lsp.2_Intron|CHID1_uc010qww.1_Intron	NM_023947	NP_076436
BRSK2	9024	broad.mit.edu	37	11	1415135	1415135	+	Intron	DEL	C	-	-			2011-2264:2012-371-T	g.chr11:1415135delC	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
BRSK2	9024	broad.mit.edu	37	11	1415162	1415163	+	Intron	INS	-	C	C			2011-2264:2012-371-T	g.chr11:1415162_1415163insC	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
MYO7A	4647	broad.mit.edu	37	11	76903987	76903988	+	Intron	INS	-	GGA	GGA	rs61900017		2011-2264:2012-371-T	g.chr11:76903987_76903988insGGA	uc001oyb.2	+						MYO7A_uc010rsm.1_Intron|MYO7A_uc001oyc.2_Intron|MYO7A_uc009yus.1_Intron|MYO7A_uc009yut.1_Intron	NM_000260	NP_000251
NCOR2	9612	broad.mit.edu	37	12	124953359	124953359	+	Intron	DEL	C	-	-			2011-2264:2012-371-T	g.chr12:124953359delC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
GRK1	6011	broad.mit.edu	37	13	114430991	114430993	+	Intron	DEL	AGT	-	-			2011-2264:2012-371-T	g.chr13:114430991_114430993delAGT	uc010tkf.1	+							NM_002929	NP_002920
KIAA0284	283638	broad.mit.edu	37	14	105338753	105338754	+	Intron	DEL	GG	-	-	rs71871178		2011-2264:2012-371-T	g.chr14:105338753_105338754delGG	uc010axb.2	+						INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Intron	NM_001112726	NP_001106197
KIAA0284	283638	broad.mit.edu	37	14	105338808	105338809	+	Intron	DEL	GT	-	-	rs137884337		2011-2264:2012-371-T	g.chr14:105338808_105338809delGT	uc010axb.2	+						INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Intron	NM_001112726	NP_001106197
SOLH	6650	broad.mit.edu	37	16	594831	594832	+	Intron	INS	-	T	T	rs11444365		2011-2264:2012-371-T	g.chr16:594831_594832insT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
USP6	9098	broad.mit.edu	37	17	5044640	5044641	+	Intron	INS	-	A	A			2011-2264:2012-371-T	g.chr17:5044640_5044641insA	uc002gau.1	+						USP6_uc002gav.1_Intron|USP6_uc010ckz.1_Intron	NM_004505	NP_004496
RAB37	326624	broad.mit.edu	37	17	72729606	72729607	+	Intron	DEL	GA	-	-	rs140792104;rs112002521		2011-2264:2012-371-T	g.chr17:72729606_72729607delGA	uc010dfu.2	+						RAB37_uc002jlc.2_Intron|RAB37_uc002jld.2_Intron	NM_175738	NP_783865
FSCN2	25794	broad.mit.edu	37	17	79498749	79498750	+	Intron	INS	-	TGGTGATGG	TGGTGATGG	rs139634804	by1000genomes	2011-2264:2012-371-T	g.chr17:79498749_79498750insTGGTGATGG	uc010wup.1	+						FSCN2_uc010wuo.1_Intron	NM_012418	NP_036550
SBNO2	22904	broad.mit.edu	37	19	1164603	1164605	+	Intron	DEL	AGG	-	-			2011-2264:2012-371-T	g.chr19:1164603_1164605delAGG	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
CD70	970	broad.mit.edu	37	19	6587224	6587225	+	Intron	INS	-	GAGA	GAGA	rs142923593	by1000genomes	2011-2264:2012-371-T	g.chr19:6587224_6587225insGAGA	uc002mfi.2	-						CD70_uc010xjf.1_Intron	NM_001252	NP_001243
SNTG2	54221	broad.mit.edu	37	2	1285002	1285003	+	Intron	INS	-	G	G			2011-2264:2012-371-T	g.chr2:1285002_1285003insG	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
TPO	7173	broad.mit.edu	37	2	1529826	1529826	+	Intron	DEL	C	-	-			2011-2264:2012-371-T	g.chr2:1529826delC	uc002qww.2	+						TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Intron|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Intron|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538
RAMP1	10267	broad.mit.edu	37	2	238819309	238819310	+	Intron	DEL	AG	-	-			2011-2264:2012-371-T	g.chr2:238819309_238819310delAG	uc002vxj.2	+							NM_005855	NP_005846
C20orf26	26074	broad.mit.edu	37	20	20338154	20338155	+	Intron	INS	-	GT	GT	rs144757305		2011-2264:2012-371-T	g.chr20:20338154_20338155insGT	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
KCNQ2	3785	broad.mit.edu	37	20	62074268	62074270	+	Intron	DEL	CAT	-	-			2011-2264:2012-371-T	g.chr20:62074268_62074270delCAT	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron|KCNQ2_uc002yfc.1_Intron	NM_172107	NP_742105
PRIC285	85441	broad.mit.edu	37	20	62191028	62191029	+	Intron	INS	-	GGG	GGG	rs140305023	by1000genomes	2011-2264:2012-371-T	g.chr20:62191028_62191029insGGG	uc002yfm.2	-						PRIC285_uc002yfl.1_Intron	NM_001037335	NP_001032412
AHRR	57491	broad.mit.edu	37	5	345186	345187	+	Intron	DEL	TG	-	-			2011-2264:2012-371-T	g.chr5:345186_345187delTG	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
CEP72	55722	broad.mit.edu	37	5	649629	649630	+	Intron	INS	-	CA	CA			2011-2264:2012-371-T	g.chr5:649629_649630insCA	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649632	649632	+	Intron	DEL	T	-	-			2011-2264:2012-371-T	g.chr5:649632delT	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1071171	1071171	+	Intron	DEL	G	-	-			2011-2264:2012-371-T	g.chr5:1071171delG	uc003jbu.2	-							NM_006598	NP_006589
PIK3R1	5295	broad.mit.edu	37	5	67513479	67513480	+	Intron	INS	-	GCGCGCGCGCGCGC	GCGCGCGCGCGCGC	rs2591416	by1000genomes	2011-2264:2012-371-T	g.chr5:67513479_67513480insGCGCGCGCGCGCGC	uc003jva.2	+							NM_181523	NP_852664
SMOC2	64094	broad.mit.edu	37	6	169015395	169015395	+	Intron	DEL	T	-	-	rs68108420		2011-2264:2012-371-T	g.chr6:169015395delT	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169015398	169015398	+	Intron	DEL	A	-	-	rs67612893		2011-2264:2012-371-T	g.chr6:169015398delA	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
ADAP1	11033	broad.mit.edu	37	7	946260	946260	+	Intron	DEL	A	-	-			2011-2264:2012-371-T	g.chr7:946260delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ASTN2	23245	broad.mit.edu	37	9	119698354	119698355	+	Intron	INS	-	CATCAT	CATCAT			2011-2264:2012-371-T	g.chr9:119698354_119698355insCATCAT	uc004bjs.1	-						ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830
TTF1	7270	broad.mit.edu	37	9	135253801	135253802	+	Intron	INS	-	GTGT	GTGT			2011-2264:2012-371-T	g.chr9:135253801_135253802insGTGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
EHMT1	79813	broad.mit.edu	37	9	140610825	140610826	+	Intron	INS	-	G	G			2011-2264:2012-371-T	g.chr9:140610825_140610826insG	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
CELF2	10659	broad.mit.edu	37	10	11326377	11326378	+	Intron	DEL	TG	-	-			2011-2265:2012-367-T	g.chr10:11326377_11326378delTG	uc001iki.3	+						CELF2_uc010qbi.1_Intron|CELF2_uc010qbj.1_Intron|CELF2_uc001ikk.2_Intron|CELF2_uc001ikl.3_Intron|CELF2_uc010qbk.1_Intron|CELF2_uc010qbl.1_Intron|CELF2_uc010qbm.1_Intron|CELF2_uc001iko.3_Intron|CELF2_uc001ikp.3_Intron|CELF2_uc010qbn.1_Intron|CELF2_uc010qbo.1_Intron|CELF2_uc010qbp.1_Intron	NM_001025077	NP_001020248
B4GALNT3	283358	broad.mit.edu	37	12	620595	620597	+	Intron	DEL	CTT	-	-			2011-2265:2012-367-T	g.chr12:620595_620597delCTT	uc001qii.1	+							NM_173593	NP_775864
B4GALNT3	283358	broad.mit.edu	37	12	620966	620968	+	Intron	DEL	CTT	-	-			2011-2265:2012-367-T	g.chr12:620966_620968delCTT	uc001qii.1	+							NM_173593	NP_775864
B4GALNT3	283358	broad.mit.edu	37	12	621435	621436	+	Intron	INS	-	C	C			2011-2265:2012-367-T	g.chr12:621435_621436insC	uc001qii.1	+							NM_173593	NP_775864
B4GALNT3	283358	broad.mit.edu	37	12	621532	621533	+	Intron	INS	-	C	C			2011-2265:2012-367-T	g.chr12:621532_621533insC	uc001qii.1	+							NM_173593	NP_775864
GRK1	6011	broad.mit.edu	37	13	114436867	114436872	+	Intron	DEL	TGTGTA	-	-			2011-2265:2012-367-T	g.chr13:114436867_114436872delTGTGTA	uc010tkf.1	+							NM_002929	NP_002920
LMF1	64788	broad.mit.edu	37	16	964681	964682	+	Intron	INS	-	T	T			2011-2265:2012-367-T	g.chr16:964681_964682insT	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
MAPK8IP3	23162	broad.mit.edu	37	16	1786833	1786838	+	Intron	DEL	GTGAGC	-	-			2011-2265:2012-367-T	g.chr16:1786833_1786838delGTGAGC	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
ABR	29	broad.mit.edu	37	17	1021075	1021075	+	Intron	DEL	C	-	-	rs112836876		2011-2265:2012-367-T	g.chr17:1021075delC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
BAHCC1	57597	broad.mit.edu	37	17	79399471	79399472	+	Intron	INS	-	TAG	TAG			2011-2265:2012-367-T	g.chr17:79399471_79399472insTAG	uc002kaf.2	+							NM_001080519	NP_001073988
TBCD	6904	broad.mit.edu	37	17	80806756	80806756	+	Intron	DEL	C	-	-	rs67238067		2011-2265:2012-367-T	g.chr17:80806756delC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
CACNG7	59284	broad.mit.edu	37	19	54425517	54425517	+	Intron	DEL	T	-	-			2011-2265:2012-367-T	g.chr19:54425517delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
CACNG7	59284	broad.mit.edu	37	19	54428870	54428870	+	Intron	DEL	T	-	-			2011-2265:2012-367-T	g.chr19:54428870delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
PXDN	7837	broad.mit.edu	37	2	1714374	1714375	+	Intron	DEL	CA	-	-	rs150825248	by1000genomes	2011-2265:2012-367-T	g.chr2:1714374_1714375delCA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
PXDN	7837	broad.mit.edu	37	2	1724485	1724486	+	Intron	INS	-	TGCA	TGCA	rs113926458		2011-2265:2012-367-T	g.chr2:1724485_1724486insTGCA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
MYT1L	23040	broad.mit.edu	37	2	1801823	1801824	+	Intron	INS	-	A	A	rs66467736		2011-2265:2012-367-T	g.chr2:1801823_1801824insA	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron|MYT1L_uc010ewk.2_Intron	NM_015025	NP_055840
DYSF	8291	broad.mit.edu	37	2	71845243	71845244	+	Intron	INS	-	GT	GT			2011-2265:2012-367-T	g.chr2:71845243_71845244insGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
RMND5A	64795	broad.mit.edu	37	2	87651177	87651178	+	Intron	INS	-	A	A			2011-2265:2012-367-T	g.chr2:87651177_87651178insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87719726	87719726	+	Intron	DEL	C	-	-			2011-2265:2012-367-T	g.chr2:87719726delC	uc002srs.3	+								
C2orf55	343990	broad.mit.edu	37	2	99516557	99516558	+	Intron	INS	-	A	A			2011-2265:2012-367-T	g.chr2:99516557_99516558insA	uc002szf.1	-							NM_207362	NP_997245
SPAG16	79582	broad.mit.edu	37	2	214272530	214272531	+	Intron	DEL	AG	-	-			2011-2265:2012-367-T	g.chr2:214272530_214272531delAG	uc002veq.2	+						SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Intron|SPAG16_uc010zjk.1_Intron	NM_024532	NP_078808
CHRNA4	1137	broad.mit.edu	37	20	61985103	61985104	+	Intron	INS	-	G	G	rs146156189;rs66520077	by1000genomes	2011-2265:2012-367-T	g.chr20:61985103_61985104insG	uc002yes.2	-						CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_Intron|CHRNA4_uc010gke.1_Intron|CHRNA4_uc002yev.1_Intron|CHRNA4_uc010gkf.1_Intron	NM_000744	NP_000735
GMEB2	26205	broad.mit.edu	37	20	62239099	62239100	+	Intron	INS	-	A	A			2011-2265:2012-367-T	g.chr20:62239099_62239100insA	uc002yfp.1	-						GMEB2_uc002yfo.1_5'Flank|GMEB2_uc002yfq.1_Intron	NM_012384	NP_036516
RANBP1	5902	broad.mit.edu	37	22	20110953	20110954	+	Intron	INS	-	C	C			2011-2265:2012-367-T	g.chr22:20110953_20110954insC	uc002zro.1	+						RANBP1_uc011ahl.1_Intron|RANBP1_uc002zrp.2_Intron	NM_002882	NP_002873
TOM1	10043	broad.mit.edu	37	22	35739336	35739337	+	Intron	INS	-	CA	CA	rs144221305		2011-2265:2012-367-T	g.chr22:35739336_35739337insCA	uc003ann.2	+						TOM1_uc011ami.1_Intron|TOM1_uc011amj.1_Intron|TOM1_uc003ans.2_Intron|TOM1_uc011amk.1_Intron|TOM1_uc003anp.2_Intron|TOM1_uc011aml.1_Intron|TOM1_uc003ano.2_Intron|TOM1_uc003anq.2_Intron|TOM1_uc003anr.2_Intron	NM_005488	NP_005479
TNK2	10188	broad.mit.edu	37	3	195597917	195597918	+	Intron	INS	-	G	G			2011-2265:2012-367-T	g.chr3:195597917_195597918insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
PRKAR1B	5575	broad.mit.edu	37	7	676072	676073	+	Intron	INS	-	A	A			2011-2265:2012-367-T	g.chr7:676072_676073insA	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron	NM_002735	NP_002726
C7orf50	84310	broad.mit.edu	37	7	1051325	1051326	+	Intron	DEL	CA	-	-			2011-2265:2012-367-T	g.chr7:1051325_1051326delCA	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
CUX1	1523	broad.mit.edu	37	7	101859967	101859968	+	Intron	INS	-	CA	CA	rs140023316;rs72194495	by1000genomes	2011-2265:2012-367-T	g.chr7:101859967_101859968insCA	uc003uyx.3	+						CUX1_uc003uys.3_Intron|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530
NECAB1	64168	broad.mit.edu	37	8	91884331	91884332	+	Intron	INS	-	T	T			2011-2265:2012-367-T	g.chr8:91884331_91884332insT	uc011lgg.1	+							NM_022351	NP_071746
COL22A1	169044	broad.mit.edu	37	8	139817380	139817381	+	Intron	DEL	GT	-	-	rs147343259		2011-2265:2012-367-T	g.chr8:139817380_139817381delGT	uc003yvd.2	-							NM_152888	NP_690848
HEATR7A	727957	broad.mit.edu	37	8	145288285	145288286	+	Intron	INS	-	C	C			2011-2265:2012-367-T	g.chr8:145288285_145288286insC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
HEATR7A	727957	broad.mit.edu	37	8	145288352	145288352	+	Intron	DEL	C	-	-			2011-2265:2012-367-T	g.chr8:145288352delC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
OLFM1	10439	broad.mit.edu	37	9	137983482	137983483	+	Intron	DEL	CA	-	-			2011-2265:2012-367-T	g.chr9:137983482_137983483delCA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
STARD8	9754	broad.mit.edu	37	X	67873455	67873456	+	Intron	DEL	CA	-	-			2011-2265:2012-367-T	g.chrX:67873455_67873456delCA	uc004dxa.2	+						STARD8_uc004dxb.2_Intron	NM_014725	NP_055540
SCNN1D	6339	broad.mit.edu	37	1	1224995	1224996	+	Intron	INS	-	CC	CC			2011-2266:2012-3270-T	g.chr1:1224995_1224996insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRDM16	63976	broad.mit.edu	37	1	3031137	3031137	+	Intron	DEL	C	-	-			2011-2266:2012-3270-T	g.chr1:3031137delC	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
TP73	7161	broad.mit.edu	37	1	3611435	3611436	+	Intron	INS	-	C	C			2011-2266:2012-3270-T	g.chr1:3611435_3611436insC	uc001akp.2	+						TP73_uc001akq.2_Intron|TP73_uc010nzj.1_Intron|TP73_uc001akr.2_Intron|TP73_uc009vlk.1_Intron|TP73_uc001aks.2_Intron	NM_005427	NP_005418
NKAIN1	79570	broad.mit.edu	37	1	31672873	31672874	+	Intron	DEL	CA	-	-	rs12062904		2011-2266:2012-3270-T	g.chr1:31672873_31672874delCA	uc010ogd.1	-							NM_024522	NP_078798
CNST	163882	broad.mit.edu	37	1	246783794	246783795	+	Intron	DEL	TC	-	-			2011-2266:2012-3270-T	g.chr1:246783794_246783795delTC	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
CCDC6	8030	broad.mit.edu	37	10	61641922	61641923	+	Intron	DEL	GC	-	-	rs78204333		2011-2266:2012-3270-T	g.chr10:61641922_61641923delGC	uc001jks.3	-							NM_005436	NP_005427
TMEM132D	121256	broad.mit.edu	37	12	129674834	129674834	+	Intron	DEL	A	-	-			2011-2266:2012-3270-T	g.chr12:129674834delA	uc009zyl.1	-							NM_133448	NP_597705
TMEM132D	121256	broad.mit.edu	37	12	130232115	130232116	+	Intron	DEL	AC	-	-			2011-2266:2012-3270-T	g.chr12:130232115_130232116delAC	uc009zyl.1	-							NM_133448	NP_597705
PIGQ	9091	broad.mit.edu	37	16	621119	621131	+	Intron	DEL	TGGTGCCCGTGTG	-	-			2011-2266:2012-3270-T	g.chr16:621119_621131delTGGTGCCCGTGTG	uc002cho.2	+						PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_Intron|PIGQ_uc002chn.2_Intron|PIGQ_uc010uui.1_5'Flank	NM_148920	NP_683721
TIMM22	29928	broad.mit.edu	37	17	897483	897483	+	5'Flank	DEL	C	-	-	rs111389070		2011-2266:2012-3270-T	g.chr17:897483delC	uc002fsc.2	+							NM_013337	NP_037469
FSCN2	25794	broad.mit.edu	37	17	79499476	79499478	+	Intron	DEL	TGA	-	-			2011-2266:2012-3270-T	g.chr17:79499476_79499478delTGA	uc010wup.1	+						FSCN2_uc010wuo.1_Intron	NM_012418	NP_036550
TBCD	6904	broad.mit.edu	37	17	80806756	80806756	+	Intron	DEL	C	-	-	rs67238067		2011-2266:2012-3270-T	g.chr17:80806756delC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
B3GNTL1	146712	broad.mit.edu	37	17	80929874	80929874	+	Intron	DEL	C	-	-			2011-2266:2012-3270-T	g.chr17:80929874delC	uc002kgg.1	-						B3GNTL1_uc002kgf.1_Intron|B3GNTL1_uc002kge.1_Intron	NM_001009905	NP_001009905
KIF1A	547	broad.mit.edu	37	2	241720905	241720908	+	Intron	DEL	GCTC	-	-			2011-2266:2012-3270-T	g.chr2:241720905_241720908delGCTC	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
RIN2	54453	broad.mit.edu	37	20	19904987	19904988	+	Intron	INS	-	C	C			2011-2266:2012-3270-T	g.chr20:19904987_19904988insC	uc002wro.1	+						RIN2_uc010gcu.1_Intron	NM_018993	NP_061866
RIN2	54453	broad.mit.edu	37	20	19904994	19904995	+	Intron	DEL	CT	-	-			2011-2266:2012-3270-T	g.chr20:19904994_19904995delCT	uc002wro.1	+						RIN2_uc010gcu.1_Intron	NM_018993	NP_061866
JPH2	57158	broad.mit.edu	37	20	42817223	42817223	+	5'Flank	DEL	G	-	-	rs71195527		2011-2266:2012-3270-T	g.chr20:42817223delG	uc002xli.1	-						JPH2_uc002xlj.2_5'Flank	NM_020433	NP_065166
JPH2	57158	broad.mit.edu	37	20	42817225	42817229	+	5'Flank	DEL	TTCCA	-	-			2011-2266:2012-3270-T	g.chr20:42817225_42817229delTTCCA	uc002xli.1	-						JPH2_uc002xlj.2_5'Flank	NM_020433	NP_065166
JPH2	57158	broad.mit.edu	37	20	42817246	42817246	+	5'Flank	DEL	T	-	-			2011-2266:2012-3270-T	g.chr20:42817246delT	uc002xli.1	-						JPH2_uc002xlj.2_5'Flank	NM_020433	NP_065166
JPH2	57158	broad.mit.edu	37	20	42817248	42817249	+	5'Flank	INS	-	AA	AA			2011-2266:2012-3270-T	g.chr20:42817248_42817249insAA	uc002xli.1	-						JPH2_uc002xlj.2_5'Flank	NM_020433	NP_065166
KCNQ2	3785	broad.mit.edu	37	20	62074252	62074253	+	Intron	INS	-	CAC	CAC			2011-2266:2012-3270-T	g.chr20:62074252_62074253insCAC	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron|KCNQ2_uc002yfc.1_Intron	NM_172107	NP_742105
CHEK2	11200	broad.mit.edu	37	22	29133463	29133463	+	Intron	DEL	T	-	-			2011-2266:2012-3270-T	g.chr22:29133463delT	uc003adu.1	-						CHEK2_uc003ads.1_5'Flank|CHEK2_uc010gvh.1_5'Flank|CHEK2_uc010gvi.1_5'Flank|CHEK2_uc010gvj.1_5'Flank|CHEK2_uc003adr.1_5'Flank|CHEK2_uc010gvk.1_5'Flank|CHEK2_uc003adt.1_Intron|CHEK2_uc003adv.1_Intron|CHEK2_uc003adw.1_Intron|CHEK2_uc003adx.1_Intron|CHEK2_uc003ady.1_Intron|CHEK2_uc003adz.1_Intron	NM_007194	NP_009125
MPPED1	758	broad.mit.edu	37	22	43828758	43828759	+	Intron	INS	-	AA	AA			2011-2266:2012-3270-T	g.chr22:43828758_43828759insAA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
FAM19A5	25817	broad.mit.edu	37	22	49069868	49069869	+	Intron	INS	-	TT	TT	rs140358066;rs71924051	by1000genomes	2011-2266:2012-3270-T	g.chr22:49069868_49069869insTT	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
CNTN6	27255	broad.mit.edu	37	3	1269484	1269484	+	Intron	DEL	T	-	-	rs77885836		2011-2266:2012-3270-T	g.chr3:1269484delT	uc003boz.2	+						CNTN6_uc010hbo.2_Intron|CNTN6_uc011asj.1_Intron|CNTN6_uc003bpa.2_Intron	NM_014461	NP_055276
PDE6B	5158	broad.mit.edu	37	4	628812	628813	+	Intron	INS	-	CCTGCCCA	CCTGCCCA			2011-2266:2012-3270-T	g.chr4:628812_628813insCCTGCCCA	uc003gap.2	+						PDE6B_uc003gao.3_Intron	NM_000283	NP_000274
CEP72	55722	broad.mit.edu	37	5	650700	650705	+	Intron	DEL	TGTGGG	-	-			2011-2266:2012-3270-T	g.chr5:650700_650705delTGTGGG	uc003jbf.2	+							NM_018140	NP_060610
CTNND2	1501	broad.mit.edu	37	5	11241120	11241120	+	Intron	DEL	C	-	-			2011-2266:2012-3270-T	g.chr5:11241120delC	uc003jfa.1	-						CTNND2_uc010itt.2_Intron|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron|CTNND2_uc011cmx.1_Intron	NM_001332	NP_001323
SMOC2	64094	broad.mit.edu	37	6	169014533	169014534	+	Intron	DEL	GG	-	-			2011-2266:2012-3270-T	g.chr6:169014533_169014534delGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
ADAP1	11033	broad.mit.edu	37	7	945360	945361	+	Intron	INS	-	A	A	rs147722082	by1000genomes	2011-2266:2012-3270-T	g.chr7:945360_945361insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945373	945374	+	Intron	INS	-	A	A			2011-2266:2012-3270-T	g.chr7:945373_945374insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946211	946212	+	Intron	INS	-	A	A			2011-2266:2012-3270-T	g.chr7:946211_946212insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PRKAG2	51422	broad.mit.edu	37	7	151539395	151539396	+	Intron	INS	-	GGTA	GGTA			2011-2266:2012-3270-T	g.chr7:151539395_151539396insGGTA	uc003wkk.2	-						PRKAG2_uc010lqe.1_Intron|PRKAG2_uc003wkm.1_Intron	NM_016203	NP_057287
NCAPG2	54892	broad.mit.edu	37	7	158460473	158460473	+	Intron	DEL	C	-	-			2011-2266:2012-3270-T	g.chr7:158460473delC	uc003wnv.1	-						NCAPG2_uc010lqu.1_Intron|NCAPG2_uc003wnw.1_Intron|NCAPG2_uc003wnx.1_Intron|NCAPG2_uc011kwe.1_Intron|NCAPG2_uc011kwc.1_5'Flank	NM_017760	NP_060230
ERICH1	157697	broad.mit.edu	37	8	626446	626446	+	Intron	DEL	G	-	-			2011-2266:2012-3270-T	g.chr8:626446delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
PPP4R4	57718	broad.mit.edu	37	14	94684921	94684922	+	Intron	DEL	CA	-	-			2011-2267:2012-369-T	g.chr14:94684921_94684922delCA	uc001ycs.1	+						PPP4R4_uc001ycr.2_Intron	NM_058237	NP_478144
AMN	81693	broad.mit.edu	37	14	103386045	103386046	+	5'Flank	INS	-	C	C			2011-2267:2012-369-T	g.chr14:103386045_103386046insC	uc001ymg.3	+							NM_030943	NP_112205
ADAMTS17	170691	broad.mit.edu	37	15	100598506	100598507	+	Intron	INS	-	T	T	rs150896439;rs68090700	by1000genomes	2011-2267:2012-369-T	g.chr15:100598506_100598507insT	uc002bvv.1	-							NM_139057	NP_620688
RAB11FIP3	9727	broad.mit.edu	37	16	554512	554513	+	Intron	INS	-	G	G			2011-2267:2012-369-T	g.chr16:554512_554513insG	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
RPH3AL	9501	broad.mit.edu	37	17	165232	165233	+	Intron	INS	-	T	T	rs75684030		2011-2267:2012-369-T	g.chr17:165232_165233insT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
TIMM22	29928	broad.mit.edu	37	17	897516	897519	+	5'Flank	DEL	ACAT	-	-	rs144033044;rs77497403		2011-2267:2012-369-T	g.chr17:897516_897519delACAT	uc002fsc.2	+							NM_013337	NP_037469
RNF165	494470	broad.mit.edu	37	18	43977417	43977418	+	Intron	DEL	GT	-	-			2011-2267:2012-369-T	g.chr18:43977417_43977418delGT	uc002lcb.1	+						RNF165_uc002lby.1_Intron|RNF165_uc010dnn.1_Intron	NM_152470	NP_689683
SBNO2	22904	broad.mit.edu	37	19	1164624	1164626	+	Intron	DEL	AGG	-	-			2011-2267:2012-369-T	g.chr19:1164624_1164626delAGG	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
CLTCL1	8218	broad.mit.edu	37	22	19189912	19189912	+	Intron	DEL	C	-	-			2011-2267:2012-369-T	g.chr22:19189912delC	uc002zpb.2	-						CLTCL1_uc011agv.1_Intron|CLTCL1_uc011agw.1_Intron|CLTCL1_uc011agt.1_Intron|CLTCL1_uc011agu.1_Intron|CLTCL1_uc010grm.1_Intron|CLTCL1_uc002zpe.2_Intron|CLTCL1_uc002zpd.1_Intron	NM_007098	NP_009029
CLTCL1	8218	broad.mit.edu	37	22	19189983	19189984	+	Intron	INS	-	C	C	rs12172332	by1000genomes	2011-2267:2012-369-T	g.chr22:19189983_19189984insC	uc002zpb.2	-						CLTCL1_uc011agv.1_Intron|CLTCL1_uc011agw.1_Intron|CLTCL1_uc011agt.1_Intron|CLTCL1_uc011agu.1_Intron|CLTCL1_uc010grm.1_Intron|CLTCL1_uc002zpe.2_Intron|CLTCL1_uc002zpd.1_Intron	NM_007098	NP_009029
EP300	2033	broad.mit.edu	37	22	41548519	41548520	+	Intron	INS	-	T	T			2011-2267:2012-369-T	g.chr22:41548519_41548520insT	uc003azl.3	+							NM_001429	NP_001420
CACNA1D	776	broad.mit.edu	37	3	53840015	53840018	+	Intron	DEL	CGTT	-	-			2011-2267:2012-369-T	g.chr3:53840015_53840018delCGTT	uc003dgv.3	+						CACNA1D_uc003dgu.3_Intron|CACNA1D_uc003dgy.3_Intron|CACNA1D_uc003dgw.3_Intron|CACNA1D_uc011bes.1_Intron	NM_001128840	NP_001122312
FAM65B	9750	broad.mit.edu	37	6	24927555	24927557	+	Intron	DEL	CAC	-	-	rs71738567		2011-2267:2012-369-T	g.chr6:24927555_24927557delCAC	uc011djs.1	-						FAM65B_uc011dju.1_Intron	NM_015864	NP_056948
CACNG7	59284	broad.mit.edu	37	19	54426399	54426400	+	Intron	INS	-	T	T			2011-2268:2012-368-T	g.chr19:54426399_54426400insT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
MLPH	79083	broad.mit.edu	37	2	238451965	238451965	+	Intron	DEL	C	-	-			2011-2268:2012-368-T	g.chr2:238451965delC	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
KIF1A	547	broad.mit.edu	37	2	241720266	241720267	+	Intron	DEL	CA	-	-	rs72032076		2011-2268:2012-368-T	g.chr2:241720266_241720267delCA	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
KCNQ2	3785	broad.mit.edu	37	20	62074268	62074270	+	Intron	DEL	CAT	-	-			2011-2268:2012-368-T	g.chr20:62074268_62074270delCAT	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron|KCNQ2_uc002yfc.1_Intron	NM_172107	NP_742105
PALLD	23022	broad.mit.edu	37	4	169600527	169600528	+	Intron	DEL	GT	-	-			2011-2268:2012-368-T	g.chr4:169600527_169600528delGT	uc011cjx.1	+						PALLD_uc003iru.2_Intron|PALLD_uc003irv.2_Intron	NM_016081	NP_057165
SLC12A7	10723	broad.mit.edu	37	5	1070888	1070888	+	Intron	DEL	C	-	-			2011-2268:2012-368-T	g.chr5:1070888delC	uc003jbu.2	-							NM_006598	NP_006589
ADAP1	11033	broad.mit.edu	37	7	945879	945879	+	Intron	DEL	A	-	-			2011-2268:2012-368-T	g.chr7:945879delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982328	982329	+	Intron	INS	-	GAGA	GAGA			2011-2268:2012-368-T	g.chr7:982328_982329insGAGA	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982959	982962	+	Intron	DEL	AGGG	-	-			2011-2268:2012-368-T	g.chr7:982959_982962delAGGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
CUX1	1523	broad.mit.edu	37	7	101860085	101860086	+	Intron	INS	-	TCT	TCT	rs380576		2011-2268:2012-368-T	g.chr7:101860085_101860086insTCT	uc003uyx.3	+						CUX1_uc003uys.3_Intron|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530
CUX1	1523	broad.mit.edu	37	7	101860088	101860089	+	Intron	INS	-	A	A			2011-2268:2012-368-T	g.chr7:101860088_101860089insA	uc003uyx.3	+						CUX1_uc003uys.3_Intron|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530
PTPRN2	5799	broad.mit.edu	37	7	158066377	158066378	+	Intron	INS	-	GG	GG			2011-2268:2012-368-T	g.chr7:158066377_158066378insGG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1780924	1780925	+	Intron	DEL	AC	-	-			2011-2268:2012-368-T	g.chr8:1780924_1780925delAC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
HEATR7A	727957	broad.mit.edu	37	8	145288431	145288432	+	Intron	INS	-	C	C	rs11435979;rs66838432		2011-2268:2012-368-T	g.chr8:145288431_145288432insC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
SMC5	23137	broad.mit.edu	37	9	72924062	72924063	+	Intron	INS	-	T	T			2011-2268:2012-368-T	g.chr9:72924062_72924063insT	uc004ahr.2	+							NM_015110	NP_055925
NOTCH2	4853	broad.mit.edu	37	1	120510819	120510819	+	Frame_Shift_Del	DEL	T	-	-			2011-2269:2012-1328-T	g.chr1:120510819delT	uc001eik.2	-	7	1401	c.1145delA	c.(1144-1146)AATfs	p.N382fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.N382fs|NOTCH2_uc001eim.3_Frame_Shift_Del_p.N299fs	NM_024408	NP_077719
KIF21B	23046	broad.mit.edu	37	1	200976478	200976481	+	Intron	DEL	ACAT	-	-			2011-2269:2012-1328-T	g.chr1:200976478_200976481delACAT	uc001gvs.1	-						KIF21B_uc001gvr.1_Intron|KIF21B_uc009wzl.1_Intron|KIF21B_uc010ppn.1_Intron|KIF21B_uc001gvt.1_5'Flank	NM_017596	NP_060066
ODF3	113746	broad.mit.edu	37	11	196020	196021	+	5'Flank	INS	-	G	G			2011-2269:2012-1328-T	g.chr11:196020_196021insG	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
MUC6	4588	broad.mit.edu	37	11	1039046	1039047	+	5'Flank	INS	-	GT	GT	rs142250331;rs140637993	by1000genomes	2011-2269:2012-1328-T	g.chr11:1039046_1039047insGT	uc001lsw.2	-							NM_005961	NP_005952
MUC5B	727897	broad.mit.edu	37	11	1284074	1284075	+	Intron	INS	-	T	T	rs138761334	by1000genomes	2011-2269:2012-1328-T	g.chr11:1284074_1284075insT	uc009ycr.1	+							NM_017511	NP_059981
CACNG7	59284	broad.mit.edu	37	19	54428318	54428318	+	Intron	DEL	C	-	-	rs67813703		2011-2269:2012-1328-T	g.chr19:54428318delC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
ACAD11	84129	broad.mit.edu	37	3	132360440	132360441	+	Intron	INS	-	GAGGAG	GAGGAG	rs113942550;rs71938221	by1000genomes	2011-2269:2012-1328-T	g.chr3:132360440_132360441insGAGGAG	uc003eov.3	-						ACAD11_uc003eoy.2_Intron	NM_032169	NP_115545
TERT	7015	broad.mit.edu	37	5	1273752	1273753	+	Intron	INS	-	A	A			2011-2269:2012-1328-T	g.chr5:1273752_1273753insA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
TERT	7015	broad.mit.edu	37	5	1273755	1273760	+	Intron	DEL	GGACCA	-	-	rs72427652;rs112889730		2011-2269:2012-1328-T	g.chr5:1273755_1273760delGGACCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
PDZD2	23037	broad.mit.edu	37	5	32003485	32003486	+	Intron	INS	-	C	C			2011-2269:2012-1328-T	g.chr5:32003485_32003486insC	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
RASA1	5921	broad.mit.edu	37	5	86672243	86672260	+	In_Frame_Del	DEL	AAGGGCATGCCACAGATG	-	-			2011-2269:2012-1328-T	g.chr5:86672243_86672260delAAGGGCATGCCACAGATG	uc003kiw.2	+	16	2163_2180	c.2045_2062delAAGGGCATGCCACAGATG	c.(2044-2064)AAAGGGCATGCCACAGATGAA>AAA	p.GHATDE683del	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_In_Frame_Del_p.GHATDE506del|RASA1_uc011ctv.1_In_Frame_Del_p.GHATDE516del|RASA1_uc011ctw.1_In_Frame_Del_p.GHATDE517del|RASA1_uc010jaw.2_In_Frame_Del_p.GHATDE505del	NM_002890	NP_002881
TCP10	6953	broad.mit.edu	37	6	167800596	167800597	+	5'Flank	INS	-	TG	TG	rs146082966;rs140039175		2011-2269:2012-1328-T	g.chr6:167800596_167800597insTG	uc003qvv.1	-						TCP10_uc003qvu.2_5'Flank|TCP10_uc003qvw.2_5'Flank	NM_004610	NP_004601
ADAP1	11033	broad.mit.edu	37	7	945964	945965	+	Intron	INS	-	A	A			2011-2269:2012-1328-T	g.chr7:945964_945965insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945984	945985	+	Intron	INS	-	A	A			2011-2269:2012-1328-T	g.chr7:945984_945985insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982905	982908	+	Intron	DEL	AGGG	-	-			2011-2269:2012-1328-T	g.chr7:982905_982908delAGGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
TRPM3	80036	broad.mit.edu	37	9	74035716	74035717	+	Intron	DEL	AA	-	-	rs149832494	by1000genomes	2011-2269:2012-1328-T	g.chr9:74035716_74035717delAA	uc004aii.2	-							NM_206948	NP_996831
GOLGA1	2800	broad.mit.edu	37	9	127658102	127658102	+	Intron	DEL	A	-	-			2011-2269:2012-1328-T	g.chr9:127658102delA	uc004bpc.2	-						GOLGA1_uc010mws.2_Intron	NM_002077	NP_002068
COL5A1	1289	broad.mit.edu	37	9	137577353	137577359	+	Intron	DEL	TCACCAT	-	-	rs143525729;rs140307113	by1000genomes	2011-2269:2012-1328-T	g.chr9:137577353_137577359delTCACCAT	uc004cfe.2	+							NM_000093	NP_000084
MUC2	4583	broad.mit.edu	37	11	1078984	1078985	+	Intron	INS	-	TGT	TGT	rs72168941		2011-2270:2012-310-T	g.chr11:1078984_1078985insTGT	uc001lsx.1	+							NM_002457	NP_002448
CRYL1	51084	broad.mit.edu	37	13	21071551	21071553	+	Intron	DEL	ACA	-	-			2011-2270:2012-310-T	g.chr13:21071551_21071553delACA	uc001une.2	-						CRYL1_uc001unf.2_Intron|CRYL1_uc001ung.2_Intron	NM_015974	NP_057058
RASA3	22821	broad.mit.edu	37	13	114785307	114785308	+	Intron	INS	-	C	C			2011-2270:2012-310-T	g.chr13:114785307_114785308insC	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
RPH3AL	9501	broad.mit.edu	37	17	136784	136785	+	Intron	INS	-	CT	CT			2011-2270:2012-310-T	g.chr17:136784_136785insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ACACA	31	broad.mit.edu	37	17	35456343	35456343	+	Intron	DEL	A	-	-			2011-2270:2012-310-T	g.chr17:35456343delA	uc002hnm.2	-						ACACA_uc002hnk.2_Intron|ACACA_uc002hnl.2_Intron|ACACA_uc002hnn.2_Intron|ACACA_uc002hno.2_Intron|ACACA_uc010cuy.2_Intron|ACACA_uc010wdb.1_Intron|ACACA_uc010wdc.1_Intron	NM_198836	NP_942133
RFX2	5990	broad.mit.edu	37	19	6070174	6070179	+	Intron	DEL	GGATGT	-	-	rs150868571	by1000genomes	2011-2270:2012-310-T	g.chr19:6070174_6070179delGGATGT	uc002meb.2	-						RFX2_uc002mec.2_Intron|RFX2_uc010xiy.1_Intron	NM_000635	NP_000626
CACNG7	59284	broad.mit.edu	37	19	54424013	54424013	+	Intron	DEL	T	-	-			2011-2270:2012-310-T	g.chr19:54424013delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
RAB3GAP1	22930	broad.mit.edu	37	2	135875415	135875416	+	Intron	INS	-	GC	GC			2011-2270:2012-310-T	g.chr2:135875415_135875416insGC	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
EEF1A2	1917	broad.mit.edu	37	20	62123743	62123744	+	Intron	INS	-	GAGA	GAGA	rs141168057		2011-2270:2012-310-T	g.chr20:62123743_62123744insGAGA	uc002yfd.1	-						EEF1A2_uc002yfe.1_Intron|EEF1A2_uc010gkg.1_Intron	NM_001958	NP_001949
TNK2	10188	broad.mit.edu	37	3	195597844	195597844	+	Intron	DEL	G	-	-			2011-2270:2012-310-T	g.chr3:195597844delG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
WHSC1	7468	broad.mit.edu	37	4	1940929	1940929	+	Intron	DEL	A	-	-			2011-2270:2012-310-T	g.chr4:1940929delA	uc003gdz.3	+						WHSC1_uc003geb.3_Intron|WHSC1_uc003gec.3_Intron|WHSC1_uc003ged.3_Intron|WHSC1_uc003gee.3_Intron|WHSC1_uc003gef.3_Intron|WHSC1_uc003gei.3_5'Flank|WHSC1_uc003gdy.1_Intron|WHSC1_uc010icd.1_Intron|WHSC1_uc003gea.1_Intron|WHSC1_uc010ice.1_Intron|WHSC1_uc003geh.1_Intron	NM_001042424	NP_001035889
SLC12A7	10723	broad.mit.edu	37	5	1071508	1071509	+	Intron	INS	-	G	G			2011-2270:2012-310-T	g.chr5:1071508_1071509insG	uc003jbu.2	-							NM_006598	NP_006589
CAMK2B	816	broad.mit.edu	37	7	44346552	44346552	+	Intron	DEL	G	-	-			2011-2270:2012-310-T	g.chr7:44346552delG	uc003tkq.2	-						CAMK2B_uc003tkp.2_Intron|CAMK2B_uc003tkx.2_Intron|CAMK2B_uc010kyd.2_Intron|CAMK2B_uc003tkr.2_Intron|CAMK2B_uc003tks.2_Intron|CAMK2B_uc003tku.2_Intron|CAMK2B_uc003tkv.2_Intron|CAMK2B_uc003tkt.2_Intron|CAMK2B_uc003tkw.2_Intron|CAMK2B_uc010kyc.2_Intron	NM_001220	NP_001211
UNC5D	137970	broad.mit.edu	37	8	35452960	35452961	+	Intron	DEL	TG	-	-			2011-2270:2012-310-T	g.chr8:35452960_35452961delTG	uc003xjr.1	+						UNC5D_uc003xjs.1_Intron	NM_080872	NP_543148
SHOX	6473	broad.mit.edu	37	X	583531	583531	+	5'Flank	DEL	G	-	-			2011-2270:2012-310-T	g.chrX:583531delG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
ACADS	35	broad.mit.edu	37	12	121170223	121170224	+	Intron	INS	-	T	T			2011-2271:2012-328-T	g.chr12:121170223_121170224insT	uc001tza.3	+						ACADS_uc010szl.1_Intron	NM_000017	NP_000008
RASA3	22821	broad.mit.edu	37	13	114761573	114761574	+	Intron	INS	-	G	G			2011-2271:2012-328-T	g.chr13:114761573_114761574insG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
PPP4R4	57718	broad.mit.edu	37	14	94684770	94684771	+	Intron	DEL	CA	-	-			2011-2271:2012-328-T	g.chr14:94684770_94684771delCA	uc001ycs.1	+						PPP4R4_uc001ycr.2_Intron	NM_058237	NP_478144
DPEP1	1800	broad.mit.edu	37	16	89701002	89701003	+	Intron	INS	-	C	C			2011-2271:2012-328-T	g.chr16:89701002_89701003insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701156	89701156	+	Intron	DEL	T	-	-			2011-2271:2012-328-T	g.chr16:89701156delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
PTPRM	5797	broad.mit.edu	37	18	7692012	7692013	+	Intron	INS	-	G	G			2011-2271:2012-328-T	g.chr18:7692012_7692013insG	uc002knn.3	+						PTPRM_uc010dkv.2_Intron	NM_002845	NP_002836
SBNO2	22904	broad.mit.edu	37	19	1165902	1165902	+	Intron	DEL	C	-	-			2011-2271:2012-328-T	g.chr19:1165902delC	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
C20orf26	26074	broad.mit.edu	37	20	20336820	20336820	+	Intron	DEL	G	-	-			2011-2271:2012-328-T	g.chr20:20336820delG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
COL18A1	80781	broad.mit.edu	37	21	46920870	46920873	+	Intron	DEL	GTGT	-	-			2011-2271:2012-328-T	g.chr21:46920870_46920873delGTGT	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron|SLC19A1_uc010gpy.1_Intron	NM_130444	NP_569711
RNF130	55819	broad.mit.edu	37	5	179442619	179442619	+	Intron	DEL	G	-	-	rs66616765		2011-2271:2012-328-T	g.chr5:179442619delG	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
ADAP1	11033	broad.mit.edu	37	7	945239	945239	+	Intron	DEL	A	-	-			2011-2271:2012-328-T	g.chr7:945239delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
GRM8	2918	broad.mit.edu	37	7	126883752	126883752	+	5'Flank	DEL	T	-	-			2011-2271:2012-328-T	g.chr7:126883752delT	uc003vlr.2	-						GRM8_uc003vls.2_5'Flank|GRM8_uc011kof.1_5'Flank|GRM8_uc003vlt.2_Intron|GRM8_uc010lkz.1_Intron	NM_000845	NP_000836
PKHD1L1	93035	broad.mit.edu	37	8	110456778	110456778	+	Intron	DEL	A	-	-	rs35472310		2011-2271:2012-328-T	g.chr8:110456778delA	uc003yne.2	+							NM_177531	NP_803875
ARHGAP39	80728	broad.mit.edu	37	8	145913147	145913147	+	5'Flank	DEL	T	-	-	rs2956178		2011-2271:2012-328-T	g.chr8:145913147delT	uc011llk.1	-							NM_025251	NP_079527
JAK2	3717	broad.mit.edu	37	9	5073682	5073682	+	Intron	DEL	T	-	-			2011-2271:2012-328-T	g.chr9:5073682delT	uc010mhm.2	+						JAK2_uc003ziw.2_Intron	NM_004972	NP_004963
ASTN1	460	broad.mit.edu	37	1	176977694	176977695	+	Intron	DEL	CA	-	-			2011-2273:2012-370-T	g.chr1:176977694_176977695delCA	uc001glc.2	-						ASTN1_uc001glb.1_Intron|ASTN1_uc001gld.1_Intron|ASTN1_uc009wwx.1_Intron|ASTN1_uc001gle.3_Intron	NM_004319	NP_004310
ASTN1	460	broad.mit.edu	37	1	176977703	176977704	+	Intron	INS	-	AGAC	AGAC			2011-2273:2012-370-T	g.chr1:176977703_176977704insAGAC	uc001glc.2	-						ASTN1_uc001glb.1_Intron|ASTN1_uc001gld.1_Intron|ASTN1_uc009wwx.1_Intron|ASTN1_uc001gle.3_Intron	NM_004319	NP_004310
SAPS3	55291	broad.mit.edu	37	11	68373795	68373798	+	Intron	DEL	TTCT	-	-			2011-2273:2012-370-T	g.chr11:68373795_68373798delTTCT	uc001onw.2	+						SAPS3_uc001onv.2_Intron|SAPS3_uc001ony.3_Intron|SAPS3_uc001onx.2_Intron|SAPS3_uc009ysh.2_Intron|SAPS3_uc001onu.2_Intron|SAPS3_uc010rqc.1_Intron|SAPS3_uc010rqd.1_Intron|SAPS3_uc001onz.2_Intron|SAPS3_uc001ooa.2_Intron	NM_001164161	NP_001157633
FAT3	120114	broad.mit.edu	37	11	92438785	92438786	+	Intron	DEL	GT	-	-			2011-2273:2012-370-T	g.chr11:92438785_92438786delGT	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438806	92438810	+	Intron	DEL	GTGGT	-	-	rs145584143	by1000genomes	2011-2273:2012-370-T	g.chr11:92438806_92438810delGTGGT	uc001pdj.3	+							NM_001008781	NP_001008781
ALDH1A3	220	broad.mit.edu	37	15	101449686	101449687	+	Intron	INS	-	TA	TA	rs67757406		2011-2273:2012-370-T	g.chr15:101449686_101449687insTA	uc002bwn.3	+						ALDH1A3_uc010bpb.2_Intron|uc002bwo.1_Intron	NM_000693	NP_000684
BAHCC1	57597	broad.mit.edu	37	17	79399350	79399350	+	Intron	DEL	G	-	-			2011-2273:2012-370-T	g.chr17:79399350delG	uc002kaf.2	+							NM_001080519	NP_001073988
TYMS	7298	broad.mit.edu	37	18	666897	666898	+	Intron	INS	-	GATGGA	GATGGA	rs150032974	by1000genomes	2011-2273:2012-370-T	g.chr18:666897_666898insGATGGA	uc010dka.1	+						TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062
ZNF236	7776	broad.mit.edu	37	18	74679601	74679602	+	Intron	INS	-	G	G	rs57351683		2011-2273:2012-370-T	g.chr18:74679601_74679602insG	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
SNTG2	54221	broad.mit.edu	37	2	1285168	1285169	+	Intron	DEL	TT	-	-	rs145298361	by1000genomes	2011-2273:2012-370-T	g.chr2:1285168_1285169delTT	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
TSSC1	7260	broad.mit.edu	37	2	3203578	3203579	+	Intron	INS	-	GA	GA	rs142971768	by1000genomes	2011-2273:2012-370-T	g.chr2:3203578_3203579insGA	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
MLPH	79083	broad.mit.edu	37	2	238452034	238452035	+	Intron	DEL	GA	-	-			2011-2273:2012-370-T	g.chr2:238452034_238452035delGA	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
KIF1A	547	broad.mit.edu	37	2	241720215	241720216	+	Intron	INS	-	CA	CA	rs66459875		2011-2273:2012-370-T	g.chr2:241720215_241720216insCA	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
KIF1A	547	broad.mit.edu	37	2	241720600	241720601	+	Intron	DEL	CC	-	-			2011-2273:2012-370-T	g.chr2:241720600_241720601delCC	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
AGXT	189	broad.mit.edu	37	2	241811807	241811809	+	Intron	DEL	GGT	-	-	rs62189565	by1000genomes	2011-2273:2012-370-T	g.chr2:241811807_241811809delGGT	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
JPH2	57158	broad.mit.edu	37	20	42817236	42817237	+	5'Flank	INS	-	GTGT	GTGT	rs146680085	by1000genomes	2011-2273:2012-370-T	g.chr20:42817236_42817237insGTGT	uc002xli.1	-						JPH2_uc002xlj.2_5'Flank	NM_020433	NP_065166
GMEB2	26205	broad.mit.edu	37	20	62240289	62240290	+	Intron	INS	-	A	A	rs76601806;rs71300921		2011-2273:2012-370-T	g.chr20:62240289_62240290insA	uc002yfp.1	-						GMEB2_uc002yfq.1_Intron	NM_012384	NP_036516
AGPAT3	56894	broad.mit.edu	37	21	45378631	45378632	+	Intron	INS	-	GT	GT	rs150442055	by1000genomes	2011-2273:2012-370-T	g.chr21:45378631_45378632insGT	uc002zdv.2	+						AGPAT3_uc002zdw.2_Intron|AGPAT3_uc002zdx.2_Intron|AGPAT3_uc002zdy.2_5'Flank	NM_020132	NP_064517
TRPM2	7226	broad.mit.edu	37	21	45816126	45816126	+	Intron	DEL	G	-	-			2011-2273:2012-370-T	g.chr21:45816126delG	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron	NM_003307	NP_003298
COL18A1	80781	broad.mit.edu	37	21	46920830	46920835	+	Intron	DEL	GTGTGT	-	-			2011-2273:2012-370-T	g.chr21:46920830_46920835delGTGTGT	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron|SLC19A1_uc010gpy.1_Intron	NM_130444	NP_569711
TOM1	10043	broad.mit.edu	37	22	35739336	35739337	+	Intron	INS	-	CA	CA	rs144221305		2011-2273:2012-370-T	g.chr22:35739336_35739337insCA	uc003ann.2	+						TOM1_uc011ami.1_Intron|TOM1_uc011amj.1_Intron|TOM1_uc003ans.2_Intron|TOM1_uc011amk.1_Intron|TOM1_uc003anp.2_Intron|TOM1_uc011aml.1_Intron|TOM1_uc003ano.2_Intron|TOM1_uc003anq.2_Intron|TOM1_uc003anr.2_Intron	NM_005488	NP_005479
TTLL8	164714	broad.mit.edu	37	22	50467619	50467620	+	Intron	INS	-	C	C	rs11419811		2011-2273:2012-370-T	g.chr22:50467619_50467620insC	uc011ark.1	-							NM_001080447	NP_001073916
GRK7	131890	broad.mit.edu	37	3	141529205	141529206	+	Intron	INS	-	C	C	rs150439476	by1000genomes	2011-2273:2012-370-T	g.chr3:141529205_141529206insC	uc011bnd.1	+							NM_139209	NP_631948
CEP72	55722	broad.mit.edu	37	5	650334	650335	+	Intron	DEL	TG	-	-			2011-2273:2012-370-T	g.chr5:650334_650335delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650518	650519	+	Intron	INS	-	G	G			2011-2273:2012-370-T	g.chr5:650518_650519insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650696	650697	+	Intron	INS	-	G	G			2011-2273:2012-370-T	g.chr5:650696_650697insG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1071524	1071525	+	Intron	INS	-	AGCCCCCAGTG	AGCCCCCAGTG			2011-2273:2012-370-T	g.chr5:1071524_1071525insAGCCCCCAGTG	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072799	1072799	+	Intron	DEL	T	-	-			2011-2273:2012-370-T	g.chr5:1072799delT	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1272757	1272758	+	Intron	DEL	CA	-	-			2011-2273:2012-370-T	g.chr5:1272757_1272758delCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
TERT	7015	broad.mit.edu	37	5	1272829	1272830	+	Intron	DEL	CA	-	-			2011-2273:2012-370-T	g.chr5:1272829_1272830delCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
C7orf50	84310	broad.mit.edu	37	7	1042153	1042154	+	Intron	INS	-	A	A			2011-2273:2012-370-T	g.chr7:1042153_1042154insA	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1042154	1042155	+	Intron	INS	-	T	T			2011-2273:2012-370-T	g.chr7:1042154_1042155insT	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1042525	1042526	+	Intron	INS	-	G	G			2011-2273:2012-370-T	g.chr7:1042525_1042526insG	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
TBXAS1	6916	broad.mit.edu	37	7	139565373	139565374	+	Intron	INS	-	AA	AA			2011-2273:2012-370-T	g.chr7:139565373_139565374insAA	uc011kqv.1	+						TBXAS1_uc003vvh.2_Intron|TBXAS1_uc010lne.2_Intron|TBXAS1_uc011kqu.1_Intron|TBXAS1_uc003vvi.2_Intron|TBXAS1_uc003vvj.2_Intron|TBXAS1_uc011kqw.1_Intron|TBXAS1_uc011kqx.1_Intron	NM_001130966	NP_001124438
MLL3	58508	broad.mit.edu	37	7	151852964	151852964	+	Intron	DEL	A	-	-			2011-2273:2012-370-T	g.chr7:151852964delA	uc003wla.2	-						MLL3_uc003wkz.2_Intron|MLL3_uc003wkx.2_Intron|MLL3_uc003wky.2_Intron	NM_170606	NP_733751
HEATR7A	727957	broad.mit.edu	37	8	145288395	145288395	+	Intron	DEL	C	-	-			2011-2273:2012-370-T	g.chr8:145288395delC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
ZNF16	7564	broad.mit.edu	37	8	146171919	146171919	+	Intron	DEL	G	-	-	rs67881920		2011-2273:2012-370-T	g.chr8:146171919delG	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
EHMT1	79813	broad.mit.edu	37	9	140610784	140610786	+	Intron	DEL	GTG	-	-			2011-2273:2012-370-T	g.chr9:140610784_140610786delGTG	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
EHMT1	79813	broad.mit.edu	37	9	140610799	140610800	+	Intron	INS	-	G	G			2011-2273:2012-370-T	g.chr9:140610799_140610800insG	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
STARD8	9754	broad.mit.edu	37	X	67872964	67872965	+	Intron	DEL	CA	-	-			2011-2273:2012-370-T	g.chrX:67872964_67872965delCA	uc004dxa.2	+						STARD8_uc004dxb.2_Intron	NM_014725	NP_055540
PRKCZ	5590	broad.mit.edu	37	1	2086882	2086884	+	Intron	DEL	TGA	-	-			2011-2275:2012-365-T	g.chr1:2086882_2086884delTGA	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron|PRKCZ_uc009vla.2_Intron|PRKCZ_uc010nyx.1_Intron|PRKCZ_uc009vlb.2_Intron	NM_002744	NP_002735
MMEL1	79258	broad.mit.edu	37	1	2566393	2566396	+	5'Flank	DEL	CACT	-	-	rs6657286		2011-2275:2012-365-T	g.chr1:2566393_2566396delCACT	uc001ajy.2	-							NM_033467	NP_258428
SYT2	127833	broad.mit.edu	37	1	202594066	202594067	+	Intron	INS	-	G	G	rs148638021		2011-2275:2012-365-T	g.chr1:202594066_202594067insG	uc001gye.2	-						SYT2_uc010pqb.1_Intron|SYT2_uc009xaf.2_Intron	NM_001136504	NP_001129976
SYT2	127833	broad.mit.edu	37	1	202594067	202594068	+	Intron	INS	-	C	C	rs148638021		2011-2275:2012-365-T	g.chr1:202594067_202594068insC	uc001gye.2	-						SYT2_uc010pqb.1_Intron|SYT2_uc009xaf.2_Intron	NM_001136504	NP_001129976
NCOR2	9612	broad.mit.edu	37	12	124916022	124916023	+	Intron	DEL	AC	-	-	rs1244097		2011-2275:2012-365-T	g.chr12:124916022_124916023delAC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
CUL4A	8451	broad.mit.edu	37	13	113886381	113886382	+	Intron	INS	-	C	C			2011-2275:2012-365-T	g.chr13:113886381_113886382insC	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc001vtl.1_5'Flank	NM_001008895	NP_001008895
CUL4A	8451	broad.mit.edu	37	13	113886382	113886383	+	Intron	INS	-	GC	GC			2011-2275:2012-365-T	g.chr13:113886382_113886383insGC	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc001vtl.1_5'Flank	NM_001008895	NP_001008895
RASA3	22821	broad.mit.edu	37	13	114749495	114749496	+	Intron	INS	-	CCT	CCT	rs142618390;rs67877370	by1000genomes	2011-2275:2012-365-T	g.chr13:114749495_114749496insCCT	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
RASA3	22821	broad.mit.edu	37	13	114873759	114873760	+	Intron	INS	-	TG	TG			2011-2275:2012-365-T	g.chr13:114873759_114873760insTG	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
SMOC1	64093	broad.mit.edu	37	14	70391519	70391519	+	Intron	DEL	G	-	-			2011-2275:2012-365-T	g.chr14:70391519delG	uc001xls.1	+						SMOC1_uc001xlt.1_Intron	NM_022137	NP_071420
TBCD	6904	broad.mit.edu	37	17	80807066	80807067	+	Intron	INS	-	C	C	rs57484051		2011-2275:2012-365-T	g.chr17:80807066_80807067insC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
SBNO2	22904	broad.mit.edu	37	19	1164603	1164605	+	Intron	DEL	AGG	-	-			2011-2275:2012-365-T	g.chr19:1164603_1164605delAGG	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
ZNF558	148156	broad.mit.edu	37	19	8933976	8933976	+	5'Flank	DEL	T	-	-	rs34890882		2011-2275:2012-365-T	g.chr19:8933976delT	uc002mkn.1	-						ZNF558_uc010xkh.1_5'Flank|ZNF558_uc010dwg.1_Intron	NM_144693	NP_653294
RMND5A	64795	broad.mit.edu	37	2	87643652	87643652	+	Intron	DEL	A	-	-			2011-2275:2012-365-T	g.chr2:87643652delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643656	87643659	+	Intron	DEL	CAGT	-	-			2011-2275:2012-365-T	g.chr2:87643656_87643659delCAGT	uc002srs.3	+								
NFE2L2	4780	broad.mit.edu	37	2	178214406	178214407	+	Intron	INS	-	TG	TG	rs145425897;rs71922128	by1000genomes	2011-2275:2012-365-T	g.chr2:178214406_178214407insTG	uc002uli.3	-						LOC100130691_uc002ulk.1_Intron	NM_001145412	NP_001138884
RIN2	54453	broad.mit.edu	37	20	19904987	19904988	+	Intron	INS	-	C	C			2011-2275:2012-365-T	g.chr20:19904987_19904988insC	uc002wro.1	+						RIN2_uc010gcu.1_Intron	NM_018993	NP_061866
RIN2	54453	broad.mit.edu	37	20	19904994	19904995	+	Intron	DEL	CT	-	-			2011-2275:2012-365-T	g.chr20:19904994_19904995delCT	uc002wro.1	+						RIN2_uc010gcu.1_Intron	NM_018993	NP_061866
C20orf26	26074	broad.mit.edu	37	20	20336089	20336090	+	Intron	DEL	TG	-	-			2011-2275:2012-365-T	g.chr20:20336089_20336090delTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
BAGE2	85319	broad.mit.edu	37	21	11057305	11057306	+	Intron	INS	-	G	G	rs150202290		2011-2275:2012-365-T	g.chr21:11057305_11057306insG	uc002yit.1	-							NM_182482	NP_872288
CECR5	27440	broad.mit.edu	37	22	17628332	17628333	+	Intron	INS	-	TCGA	TCGA	rs71933919		2011-2275:2012-365-T	g.chr22:17628332_17628333insTCGA	uc002zmf.2	-						CECR5_uc002zme.2_Intron|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Intron	NM_033070	NP_149061
CADM2	253559	broad.mit.edu	37	3	85536790	85536792	+	Intron	DEL	GAG	-	-	rs112613086		2011-2275:2012-365-T	g.chr3:85536790_85536792delGAG	uc003dqj.2	+						CADM2_uc003dqk.2_Intron	NM_153184	NP_694854
CHCHD6	84303	broad.mit.edu	37	3	126581087	126581089	+	Intron	DEL	CCT	-	-			2011-2275:2012-365-T	g.chr3:126581087_126581089delCCT	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
CYP4V2	285440	broad.mit.edu	37	4	187125583	187125584	+	Intron	DEL	AG	-	-	rs5864976;rs70964923		2011-2275:2012-365-T	g.chr4:187125583_187125584delAG	uc003iyw.3	+						CYP4V2_uc010ism.2_RNA	NM_207352	NP_997235
TERT	7015	broad.mit.edu	37	5	1273269	1273270	+	Intron	INS	-	CA	CA	rs34084612		2011-2275:2012-365-T	g.chr5:1273269_1273270insCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
PDZD2	23037	broad.mit.edu	37	5	32002889	32002889	+	Intron	DEL	A	-	-			2011-2275:2012-365-T	g.chr5:32002889delA	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
ECSCR	641700	broad.mit.edu	37	5	138786906	138786907	+	Intron	DEL	GT	-	-			2011-2275:2012-365-T	g.chr5:138786906_138786907delGT	uc011cze.1	-						ECSCR_uc011czd.1_5'Flank	NM_001077693	NP_001071161
ADAP1	11033	broad.mit.edu	37	7	945227	945227	+	Intron	DEL	A	-	-			2011-2275:2012-365-T	g.chr7:945227delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982936	982938	+	Intron	DEL	GAC	-	-	rs139903029	by1000genomes	2011-2275:2012-365-T	g.chr7:982936_982938delGAC	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
COL5A1	1289	broad.mit.edu	37	9	137576972	137576973	+	Intron	INS	-	CATT	CATT	rs141729483		2011-2275:2012-365-T	g.chr9:137576972_137576973insCATT	uc004cfe.2	+							NM_000093	NP_000084
SHOX	6473	broad.mit.edu	37	X	583506	583507	+	5'Flank	DEL	AG	-	-			2011-2275:2012-365-T	g.chrX:583506_583507delAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
CNST	163882	broad.mit.edu	37	1	246783205	246783206	+	Intron	INS	-	TC	TC			2011-2276:2012-364-T	g.chr1:246783205_246783206insTC	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
PTEN	5728	broad.mit.edu	37	10	89717695	89717696	+	Frame_Shift_Ins	INS	-	T	T			2011-2276:2012-364-T	g.chr10:89717695_89717696insT	uc001kfb.2	+	8	1751_1752	c.720_721insT	c.(718-723)TACTTTfs	p.Y240fs		NM_000314	NP_000305
GRK5	2869	broad.mit.edu	37	10	121051454	121051456	+	Intron	DEL	TTT	-	-			2011-2276:2012-364-T	g.chr10:121051454_121051456delTTT	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
CALY	50632	broad.mit.edu	37	10	135147763	135147763	+	Intron	DEL	G	-	-			2011-2276:2012-364-T	g.chr10:135147763delG	uc001lmo.2	-							NM_015722	NP_056537
ELP4	26610	broad.mit.edu	37	11	31648802	31648802	+	Intron	DEL	G	-	-			2011-2276:2012-364-T	g.chr11:31648802delG	uc001mtb.2	+						ELP4_uc001mta.1_Intron|ELP4_uc001mtc.2_Intron|ELP4_uc010rdz.1_Intron	NM_019040	NP_061913
TPCN2	219931	broad.mit.edu	37	11	68832402	68832403	+	Intron	INS	-	GC	GC			2011-2276:2012-364-T	g.chr11:68832402_68832403insGC	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
TPCN2	219931	broad.mit.edu	37	11	68832408	68832409	+	Intron	INS	-	G	G	rs111361884		2011-2276:2012-364-T	g.chr11:68832408_68832409insG	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
RILPL1	353116	broad.mit.edu	37	12	123996233	123996234	+	Intron	DEL	GT	-	-			2011-2276:2012-364-T	g.chr12:123996233_123996234delGT	uc001ufe.2	-						RILPL1_uc001ufd.2_Intron|RILPL1_uc010tas.1_Intron	NM_178314	NP_847884
SBNO2	22904	broad.mit.edu	37	19	1164434	1164435	+	Intron	INS	-	AAC	AAC			2011-2276:2012-364-T	g.chr19:1164434_1164435insAAC	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
SBNO2	22904	broad.mit.edu	37	19	1164603	1164605	+	Intron	DEL	AGG	-	-			2011-2276:2012-364-T	g.chr19:1164603_1164605delAGG	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
HDGFRP2	84717	broad.mit.edu	37	19	4493027	4493031	+	Intron	DEL	GTGTG	-	-			2011-2276:2012-364-T	g.chr19:4493027_4493031delGTGTG	uc002mao.2	+						HDGFRP2_uc002map.2_Intron|HDGFRP2_uc010dtz.1_Intron	NM_001001520	NP_001001520
HDGFRP2	84717	broad.mit.edu	37	19	4493040	4493043	+	Intron	DEL	TATC	-	-			2011-2276:2012-364-T	g.chr19:4493040_4493043delTATC	uc002mao.2	+						HDGFRP2_uc002map.2_Intron|HDGFRP2_uc010dtz.1_Intron	NM_001001520	NP_001001520
HDGFRP2	84717	broad.mit.edu	37	19	4493101	4493102	+	Intron	DEL	GT	-	-			2011-2276:2012-364-T	g.chr19:4493101_4493102delGT	uc002mao.2	+						HDGFRP2_uc002map.2_Intron|HDGFRP2_uc010dtz.1_Intron	NM_001001520	NP_001001520
PXDN	7837	broad.mit.edu	37	2	1724171	1724176	+	Intron	DEL	ATGCAC	-	-			2011-2276:2012-364-T	g.chr2:1724171_1724176delATGCAC	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
MYT1L	23040	broad.mit.edu	37	2	2007939	2007939	+	Intron	DEL	T	-	-			2011-2276:2012-364-T	g.chr2:2007939delT	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron|MYT1L_uc002qxf.1_Intron	NM_015025	NP_055840
TSSC1	7260	broad.mit.edu	37	2	3273374	3273380	+	Intron	DEL	GCACTCA	-	-	rs111599799;rs72187954		2011-2276:2012-364-T	g.chr2:3273374_3273380delGCACTCA	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
BCL11A	53335	broad.mit.edu	37	2	60694730	60694732	+	Intron	DEL	TGG	-	-			2011-2276:2012-364-T	g.chr2:60694730_60694732delTGG	uc002sae.1	-						BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Intron|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044
TNS1	7145	broad.mit.edu	37	2	218670247	218670248	+	Intron	INS	-	T	T	rs139137422		2011-2276:2012-364-T	g.chr2:218670247_218670248insT	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
TNS1	7145	broad.mit.edu	37	2	218670254	218670254	+	Intron	DEL	A	-	-			2011-2276:2012-364-T	g.chr2:218670254delA	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
LAMA5	3911	broad.mit.edu	37	20	60889091	60889092	+	Intron	DEL	GA	-	-	rs113639499		2011-2276:2012-364-T	g.chr20:60889091_60889092delGA	uc002ycq.2	-							NM_005560	NP_005551
PCBP3	54039	broad.mit.edu	37	21	47235666	47235667	+	Intron	INS	-	GTGGTGAGTG	GTGGTGAGTG			2011-2276:2012-364-T	g.chr21:47235666_47235667insGTGGTGAGTG	uc010gqb.2	+							NM_020528	NP_065389
C21orf56	84221	broad.mit.edu	37	21	47590159	47590160	+	Intron	INS	-	T	T	rs67258753		2011-2276:2012-364-T	g.chr21:47590159_47590160insT	uc011afu.1	-						C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
KREMEN1	83999	broad.mit.edu	37	22	29516097	29516098	+	Intron	INS	-	AC	AC	rs56775329		2011-2276:2012-364-T	g.chr22:29516097_29516098insAC	uc011akm.1	+						KREMEN1_uc003ael.2_Intron|KREMEN1_uc011akn.1_Intron	NM_032045	NP_114434
MPPED1	758	broad.mit.edu	37	22	43828618	43828621	+	Intron	DEL	AGAG	-	-			2011-2276:2012-364-T	g.chr22:43828618_43828621delAGAG	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
CELSR1	9620	broad.mit.edu	37	22	46845340	46845340	+	Intron	DEL	C	-	-			2011-2276:2012-364-T	g.chr22:46845340delC	uc003bhw.1	-							NM_014246	NP_055061
FAM19A5	25817	broad.mit.edu	37	22	49069868	49069869	+	Intron	INS	-	TT	TT	rs140358066;rs71924051	by1000genomes	2011-2276:2012-364-T	g.chr22:49069868_49069869insTT	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
CACNA1D	776	broad.mit.edu	37	3	53840015	53840018	+	Intron	DEL	CGTT	-	-			2011-2276:2012-364-T	g.chr3:53840015_53840018delCGTT	uc003dgv.3	+						CACNA1D_uc003dgu.3_Intron|CACNA1D_uc003dgy.3_Intron|CACNA1D_uc003dgw.3_Intron|CACNA1D_uc011bes.1_Intron	NM_001128840	NP_001122312
CADM2	253559	broad.mit.edu	37	3	85536790	85536792	+	Intron	DEL	GAG	-	-	rs112613086		2011-2276:2012-364-T	g.chr3:85536790_85536792delGAG	uc003dqj.2	+						CADM2_uc003dqk.2_Intron	NM_153184	NP_694854
IGF2BP2	10644	broad.mit.edu	37	3	185383244	185383246	+	Intron	DEL	AGA	-	-			2011-2276:2012-364-T	g.chr3:185383244_185383246delAGA	uc003fpo.2	-						IGF2BP2_uc010hyi.2_Intron|IGF2BP2_uc010hyj.2_Intron|IGF2BP2_uc010hyk.2_Intron|IGF2BP2_uc010hyl.2_Intron|IGF2BP2_uc003fpp.2_Intron|IGF2BP2_uc003fpq.2_Intron	NM_006548	NP_006539
ADAP1	11033	broad.mit.edu	37	7	946211	946212	+	Intron	INS	-	A	A			2011-2276:2012-364-T	g.chr7:946211_946212insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
MAD1L1	8379	broad.mit.edu	37	7	1980649	1980650	+	Intron	INS	-	T	T	rs143896454	by1000genomes	2011-2276:2012-364-T	g.chr7:1980649_1980650insT	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron|MAD1L1_uc003sld.1_5'Flank	NM_001013836	NP_001013858
PPP1R9A	55607	broad.mit.edu	37	7	94833920	94833921	+	Intron	DEL	CA	-	-			2011-2276:2012-364-T	g.chr7:94833920_94833921delCA	uc003unp.2	+						PPP1R9A_uc010lfj.2_Intron|PPP1R9A_uc011kif.1_Intron|PPP1R9A_uc003unq.2_Intron|PPP1R9A_uc011kig.1_Intron	NM_017650	NP_060120
COL5A1	1289	broad.mit.edu	37	9	137577431	137577432	+	Intron	INS	-	A	A	rs139419653		2011-2276:2012-364-T	g.chr9:137577431_137577432insA	uc004cfe.2	+							NM_000093	NP_000084
SEC16A	9919	broad.mit.edu	37	9	139342874	139342875	+	Intron	INS	-	A	A			2011-2276:2012-364-T	g.chr9:139342874_139342875insA	uc004chx.2	-						SEC16A_uc004chp.2_5'Flank|SEC16A_uc004chq.2_5'Flank|SEC16A_uc011mea.1_5'Flank|SEC16A_uc004chr.2_Frame_Shift_Ins_p.R53fs|SEC16A_uc004chs.2_Intron|SEC16A_uc004cht.2_Intron|SEC16A_uc004chu.2_Intron|SEC16A_uc004chv.3_Intron|SEC16A_uc004chw.2_Intron|SEC16A_uc010nbn.2_Intron	NM_014866	NP_055681
MARK2	2011	broad.mit.edu	37	11	63639012	63639013	+	Intron	INS	-	G	G			2011-2277:2012-372-T	g.chr11:63639012_63639013insG	uc001nxw.2	+						MARK2_uc001nxx.2_Intron|MARK2_uc001nxy.2_Intron|MARK2_uc001nxv.3_Intron	NM_001039469	NP_001034558
FAT3	120114	broad.mit.edu	37	11	92438806	92438810	+	Intron	DEL	GTGGT	-	-	rs145584143	by1000genomes	2011-2277:2012-372-T	g.chr11:92438806_92438810delGTGGT	uc001pdj.3	+							NM_001008781	NP_001008781
PCCA	5095	broad.mit.edu	37	13	101104235	101104236	+	Intron	INS	-	C	C			2011-2277:2012-372-T	g.chr13:101104235_101104236insC	uc001voo.2	+						PCCA_uc010aga.2_Intron|PCCA_uc010tiz.1_Intron|PCCA_uc001vop.2_Intron	NM_000282	NP_000273
PCCA	5095	broad.mit.edu	37	13	101104248	101104250	+	Intron	DEL	CCT	-	-			2011-2277:2012-372-T	g.chr13:101104248_101104250delCCT	uc001voo.2	+						PCCA_uc010aga.2_Intron|PCCA_uc010tiz.1_Intron|PCCA_uc001vop.2_Intron	NM_000282	NP_000273
ATP11A	23250	broad.mit.edu	37	13	113369653	113369653	+	Intron	DEL	G	-	-			2011-2277:2012-372-T	g.chr13:113369653delG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
ANKRD11	29123	broad.mit.edu	37	16	89356636	89356637	+	Intron	INS	-	T	T			2011-2277:2012-372-T	g.chr16:89356636_89356637insT	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fnb.1_Intron	NM_013275	NP_037407
DPEP1	1800	broad.mit.edu	37	16	89701082	89701082	+	Intron	DEL	C	-	-	rs112541518		2011-2277:2012-372-T	g.chr16:89701082delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
SLC38A10	124565	broad.mit.edu	37	17	79223268	79223273	+	Intron	DEL	GGGAAG	-	-			2011-2277:2012-372-T	g.chr17:79223268_79223273delGGGAAG	uc002jzz.1	-						SLC38A10_uc002jzy.1_Intron	NM_001037984	NP_001033073
SBNO2	22904	broad.mit.edu	37	19	1164434	1164435	+	Intron	INS	-	AAC	AAC			2011-2277:2012-372-T	g.chr19:1164434_1164435insAAC	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
CACNG7	59284	broad.mit.edu	37	19	54428525	54428525	+	Intron	DEL	T	-	-			2011-2277:2012-372-T	g.chr19:54428525delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
MYT1L	23040	broad.mit.edu	37	2	2299458	2299459	+	Intron	DEL	AG	-	-			2011-2277:2012-372-T	g.chr2:2299458_2299459delAG	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
SLC4A5	57835	broad.mit.edu	37	2	74557753	74557754	+	Intron	INS	-	T	T	rs139880064		2011-2277:2012-372-T	g.chr2:74557753_74557754insT	uc002skn.2	-						SLC4A5_uc002skl.2_Intron|SLC4A5_uc002skp.1_5'Flank|SLC4A5_uc002sks.1_Intron	NM_133478	NP_597812
RMND5A	64795	broad.mit.edu	37	2	87643656	87643659	+	Intron	DEL	CAGT	-	-			2011-2277:2012-372-T	g.chr2:87643656_87643659delCAGT	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643658	87643660	+	Intron	DEL	GTC	-	-			2011-2277:2012-372-T	g.chr2:87643658_87643660delGTC	uc002srs.3	+								
CLASP1	23332	broad.mit.edu	37	2	122369378	122369378	+	Intron	DEL	T	-	-			2011-2277:2012-372-T	g.chr2:122369378delT	uc002tnc.2	-						CLASP1_uc010yyz.1_Intron|CLASP1_uc010yza.1_Intron|CLASP1_uc010yzb.1_Intron|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Intron	NM_015282	NP_056097
CLASP1	23332	broad.mit.edu	37	2	122369380	122369381	+	Intron	DEL	AT	-	-			2011-2277:2012-372-T	g.chr2:122369380_122369381delAT	uc002tnc.2	-						CLASP1_uc010yyz.1_Intron|CLASP1_uc010yza.1_Intron|CLASP1_uc010yzb.1_Intron|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Intron	NM_015282	NP_056097
TNS1	7145	broad.mit.edu	37	2	218670336	218670337	+	Intron	INS	-	C	C			2011-2277:2012-372-T	g.chr2:218670336_218670337insC	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
HNF4A	3172	broad.mit.edu	37	20	43033747	43033748	+	Intron	INS	-	A	A			2011-2277:2012-372-T	g.chr20:43033747_43033748insA	uc002xma.2	+						HNF4A_uc010zwo.1_Intron|HNF4A_uc002xlt.2_Intron|HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Intron|uc002xlw.1_5'Flank|HNF4A_uc002xly.2_Intron|HNF4A_uc002xlz.2_Intron|HNF4A_uc010ggq.2_Intron	NM_000457	NP_000448
HNF4A	3172	broad.mit.edu	37	20	43033748	43033749	+	Intron	INS	-	T	T			2011-2277:2012-372-T	g.chr20:43033748_43033749insT	uc002xma.2	+						HNF4A_uc010zwo.1_Intron|HNF4A_uc002xlt.2_Intron|HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Intron|uc002xlw.1_5'Flank|HNF4A_uc002xly.2_Intron|HNF4A_uc002xlz.2_Intron|HNF4A_uc010ggq.2_Intron	NM_000457	NP_000448
ABCG1	9619	broad.mit.edu	37	21	43712816	43712817	+	Intron	INS	-	ACCA	ACCA			2011-2277:2012-372-T	g.chr21:43712816_43712817insACCA	uc002zaq.2	+						ABCG1_uc002zan.2_Intron|ABCG1_uc002zam.2_Intron|ABCG1_uc002zao.2_Intron|ABCG1_uc002zap.2_Intron|ABCG1_uc002zar.2_Intron|ABCG1_uc011aev.1_Intron|ABCG1_uc010gpb.1_Intron	NM_004915	NP_004906
COL18A1	80781	broad.mit.edu	37	21	46920530	46920531	+	Intron	DEL	GT	-	-			2011-2277:2012-372-T	g.chr21:46920530_46920531delGT	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron|SLC19A1_uc010gpy.1_Intron	NM_130444	NP_569711
MKL1	57591	broad.mit.edu	37	22	40816933	40816933	+	Frame_Shift_Del	DEL	G	-	-			2011-2277:2012-372-T	g.chr22:40816933delG	uc003ayv.1	-	7	1006	c.799delC	c.(799-801)CAGfs	p.Q267fs	MKL1_uc003ayw.1_Frame_Shift_Del_p.Q267fs|MKL1_uc010gye.1_Frame_Shift_Del_p.Q267fs|MKL1_uc010gyf.1_Frame_Shift_Del_p.Q217fs	NM_020831	NP_065882
FAM19A5	25817	broad.mit.edu	37	22	48938215	48938218	+	Intron	DEL	GTGT	-	-			2011-2277:2012-372-T	g.chr22:48938215_48938218delGTGT	uc003bim.3	+							NM_001082967	NP_001076436
FAM19A5	25817	broad.mit.edu	37	22	49074857	49074857	+	Intron	DEL	A	-	-			2011-2277:2012-372-T	g.chr22:49074857delA	uc003bim.3	+						FAM19A5_uc003bio.3_Intron	NM_001082967	NP_001076436
FOXP1	27086	broad.mit.edu	37	3	71633324	71633324	+	5'Flank	DEL	T	-	-			2011-2277:2012-372-T	g.chr3:71633324delT	uc003dop.2	-						FOXP1_uc003doo.2_5'Flank|FOXP1_uc003dos.2_5'Flank	NM_032682	NP_116071
CEP72	55722	broad.mit.edu	37	5	650204	650205	+	Intron	DEL	TG	-	-			2011-2277:2012-372-T	g.chr5:650204_650205delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650334	650335	+	Intron	DEL	TG	-	-			2011-2277:2012-372-T	g.chr5:650334_650335delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650518	650519	+	Intron	INS	-	G	G			2011-2277:2012-372-T	g.chr5:650518_650519insG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1070705	1070705	+	Intron	DEL	G	-	-			2011-2277:2012-372-T	g.chr5:1070705delG	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1273269	1273270	+	Intron	INS	-	CA	CA	rs34084612		2011-2277:2012-372-T	g.chr5:1273269_1273270insCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
ADAMTS16	170690	broad.mit.edu	37	5	5305262	5305262	+	Intron	DEL	C	-	-			2011-2277:2012-372-T	g.chr5:5305262delC	uc003jdl.2	+							NM_139056	NP_620687
PDZD2	23037	broad.mit.edu	37	5	32002687	32002687	+	Intron	DEL	T	-	-			2011-2277:2012-372-T	g.chr5:32002687delT	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
PDZD2	23037	broad.mit.edu	37	5	32002689	32002689	+	Intron	DEL	A	-	-			2011-2277:2012-372-T	g.chr5:32002689delA	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
PDZD2	23037	broad.mit.edu	37	5	32002697	32002698	+	Intron	DEL	CA	-	-			2011-2277:2012-372-T	g.chr5:32002697_32002698delCA	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
PDZD2	23037	broad.mit.edu	37	5	32002732	32002733	+	Intron	INS	-	C	C			2011-2277:2012-372-T	g.chr5:32002732_32002733insC	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
CAPN11	11131	broad.mit.edu	37	6	44149362	44149365	+	Intron	DEL	ACAT	-	-	rs113916985		2011-2277:2012-372-T	g.chr6:44149362_44149365delACAT	uc003owt.1	+						CAPN11_uc011dvn.1_Intron	NM_007058	NP_008989
TMEM181	57583	broad.mit.edu	37	6	159027214	159027215	+	Intron	DEL	AG	-	-			2011-2277:2012-372-T	g.chr6:159027214_159027215delAG	uc003qrm.3	+						TMEM181_uc010kjr.1_Intron	NM_020823	NP_065874
ADAP1	11033	broad.mit.edu	37	7	945225	945225	+	Intron	DEL	A	-	-			2011-2277:2012-372-T	g.chr7:945225delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945930	945931	+	Intron	INS	-	A	A			2011-2277:2012-372-T	g.chr7:945930_945931insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf50	84310	broad.mit.edu	37	7	1040999	1041000	+	Intron	INS	-	A	A			2011-2277:2012-372-T	g.chr7:1040999_1041000insA	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1041000	1041001	+	Intron	INS	-	T	T			2011-2277:2012-372-T	g.chr7:1041000_1041001insT	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
CYTH3	9265	broad.mit.edu	37	7	6219353	6219354	+	Intron	DEL	CA	-	-	rs144596575	by1000genomes	2011-2277:2012-372-T	g.chr7:6219353_6219354delCA	uc003spt.2	-							NM_004227	NP_004218
TXNDC3	51314	broad.mit.edu	37	7	37886983	37886984	+	5'Flank	INS	-	GAG	GAG	rs149290475	by1000genomes	2011-2277:2012-372-T	g.chr7:37886983_37886984insGAG	uc003tfn.2	+							NM_016616	NP_057700
PLXNA4	91584	broad.mit.edu	37	7	132248694	132248696	+	Intron	DEL	TCC	-	-			2011-2277:2012-372-T	g.chr7:132248694_132248696delTCC	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
ARHGEF10	9639	broad.mit.edu	37	8	1781196	1781197	+	Intron	DEL	GC	-	-	rs55882250	by1000genomes	2011-2277:2012-372-T	g.chr8:1781196_1781197delGC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
ARHGEF10	9639	broad.mit.edu	37	8	1781199	1781199	+	Intron	DEL	G	-	-			2011-2277:2012-372-T	g.chr8:1781199delG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
ARHGEF10	9639	broad.mit.edu	37	8	1781201	1781202	+	Intron	INS	-	C	C			2011-2277:2012-372-T	g.chr8:1781201_1781202insC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
FAM167A	83648	broad.mit.edu	37	8	11313762	11313763	+	Intron	INS	-	GA	GA	rs76867855;rs145125271	by1000genomes	2011-2277:2012-372-T	g.chr8:11313762_11313763insGA	uc003wtw.2	-							NM_053279	NP_444509
FAM167A	83648	broad.mit.edu	37	8	11313764	11313765	+	Intron	INS	-	GTGA	GTGA			2011-2277:2012-372-T	g.chr8:11313764_11313765insGTGA	uc003wtw.2	-							NM_053279	NP_444509
HGSNAT	138050	broad.mit.edu	37	8	43050798	43050799	+	Intron	INS	-	AGA	AGA	rs144111342	by1000genomes	2011-2277:2012-372-T	g.chr8:43050798_43050799insAGA	uc003xpx.3	+							NM_152419	NP_689632
NOTCH1	4851	broad.mit.edu	37	9	139403240	139403241	+	Intron	INS	-	G	G	rs149368682;rs68024424	by1000genomes	2011-2277:2012-372-T	g.chr9:139403240_139403241insG	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
EHMT1	79813	broad.mit.edu	37	9	140615677	140615677	+	Intron	DEL	C	-	-			2011-2277:2012-372-T	g.chr9:140615677delC	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
CSF2RA	1438	broad.mit.edu	37	X	1399988	1399989	+	Intron	DEL	CC	-	-			2011-2277:2012-372-T	g.chrX:1399988_1399989delCC	uc010nct.2	+						CSF2RA_uc011mhb.1_Intron|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Intron|CSF2RA_uc004cpo.2_Intron|CSF2RA_uc010ncu.2_Intron|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_5'Flank|CSF2RA_uc004cpr.2_5'Flank	NM_001161529	NP_001155001
CSF2RA	1438	broad.mit.edu	37	X	1400006	1400008	+	Intron	DEL	CTC	-	-			2011-2277:2012-372-T	g.chrX:1400006_1400008delCTC	uc010nct.2	+						CSF2RA_uc011mhb.1_Intron|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Intron|CSF2RA_uc004cpo.2_Intron|CSF2RA_uc010ncu.2_Intron|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_5'Flank|CSF2RA_uc004cpr.2_5'Flank	NM_001161529	NP_001155001
MEGF6	1953	broad.mit.edu	37	1	3493517	3493518	+	Intron	INS	-	C	C			2011-2278:2012-1320-T	g.chr1:3493517_3493518insC	uc001akl.2	-							NM_001409	NP_001400
PIK3R3	8503	broad.mit.edu	37	1	46597496	46597497	+	Intron	INS	-	T	T	rs66776704		2011-2278:2012-1320-T	g.chr1:46597496_46597497insT	uc001cpb.3	-						PIK3R3_uc009vyb.2_Intron|PIK3R3_uc009vyc.2_Intron|PIK3R3_uc001cpc.3_Intron|PIK3R3_uc010olw.1_Intron	NM_003629	NP_003620
CCDC6	8030	broad.mit.edu	37	10	61642163	61642164	+	Intron	DEL	AG	-	-			2011-2278:2012-1320-T	g.chr10:61642163_61642164delAG	uc001jks.3	-							NM_005436	NP_005427
KNDC1	85442	broad.mit.edu	37	10	135022782	135022783	+	Intron	INS	-	GTGTG	GTGTG	rs142306215;rs71951226	by1000genomes	2011-2278:2012-1320-T	g.chr10:135022782_135022783insGTGTG	uc001llz.1	+							NM_152643	NP_689856
CHID1	66005	broad.mit.edu	37	11	881475	881476	+	Intron	INS	-	ACC	ACC	rs148735253		2011-2278:2012-1320-T	g.chr11:881475_881476insACC	uc010qwu.1	-						CHID1_uc001lsl.2_Intron|CHID1_uc010qwv.1_Intron|CHID1_uc001lsn.2_Intron|CHID1_uc001lsm.2_Intron|CHID1_uc001lso.2_Intron|CHID1_uc001lsp.2_Intron|CHID1_uc010qww.1_Intron|uc001lsq.1_5'UTR|uc001lsr.1_3'UTR	NM_023947	NP_076436
MUC2	4583	broad.mit.edu	37	11	1085278	1085279	+	Intron	INS	-	CCTC	CCTC	rs71682626		2011-2278:2012-1320-T	g.chr11:1085278_1085279insCCTC	uc001lsx.1	+							NM_002457	NP_002448
MYO7A	4647	broad.mit.edu	37	11	76904022	76904023	+	Intron	INS	-	TTGT	TTGT	rs71466398		2011-2278:2012-1320-T	g.chr11:76904022_76904023insTTGT	uc001oyb.2	+						MYO7A_uc010rsm.1_Intron|MYO7A_uc001oyc.2_Intron|MYO7A_uc009yus.1_Intron|MYO7A_uc009yut.1_Intron	NM_000260	NP_000251
FAM101A	144347	broad.mit.edu	37	12	124787398	124787399	+	Intron	INS	-	G	G			2011-2278:2012-1320-T	g.chr12:124787398_124787399insG	uc001ugd.1	+						FAM101A_uc001uge.1_Intron	NM_181709	NP_859060
GPR133	283383	broad.mit.edu	37	12	131530850	131530850	+	Intron	DEL	C	-	-			2011-2278:2012-1320-T	g.chr12:131530850delC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
GPR133	283383	broad.mit.edu	37	12	131530937	131530937	+	Intron	DEL	C	-	-			2011-2278:2012-1320-T	g.chr12:131530937delC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
ATP11A	23250	broad.mit.edu	37	13	113433031	113433032	+	Intron	INS	-	GAG	GAG	rs10645187;rs67803605		2011-2278:2012-1320-T	g.chr13:113433031_113433032insGAG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
ATP11A	23250	broad.mit.edu	37	13	113433293	113433295	+	Intron	DEL	GAG	-	-			2011-2278:2012-1320-T	g.chr13:113433293_113433295delGAG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
ATP11A	23250	broad.mit.edu	37	13	113433486	113433487	+	Intron	INS	-	G	G			2011-2278:2012-1320-T	g.chr13:113433486_113433487insG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
TPSD1	23430	broad.mit.edu	37	16	1305069	1305069	+	5'Flank	DEL	G	-	-			2011-2278:2012-1320-T	g.chr16:1305069delG	uc002clb.1	+						TPSD1_uc010brm.1_5'Flank	NM_012217	NP_036349
CDH1	999	broad.mit.edu	37	16	68770847	68770847	+	5'Flank	DEL	A	-	-	rs5030625	byFrequency	2011-2278:2012-1320-T	g.chr16:68770847delA	uc002ewg.1	+						CDH1_uc010vlj.1_5'Flank|CDH1_uc010cfg.1_5'Flank	NM_004360	NP_004351
KLHDC4	54758	broad.mit.edu	37	16	87772264	87772265	+	Intron	INS	-	TC	TC	rs149209566;rs71392311	by1000genomes	2011-2278:2012-1320-T	g.chr16:87772264_87772265insTC	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
KLHDC4	54758	broad.mit.edu	37	16	87772470	87772471	+	Intron	INS	-	CATC	CATC	rs71667828		2011-2278:2012-1320-T	g.chr16:87772470_87772471insCATC	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
BRIP1	83990	broad.mit.edu	37	17	59857600	59857600	+	Intron	DEL	A	-	-			2011-2278:2012-1320-T	g.chr17:59857600delA	uc002izk.1	-						BRIP1_uc002izl.1_Intron	NM_032043	NP_114432
ZNF236	7776	broad.mit.edu	37	18	74679353	74679353	+	Intron	DEL	T	-	-			2011-2278:2012-1320-T	g.chr18:74679353delT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
ZNF236	7776	broad.mit.edu	37	18	74679360	74679361	+	Intron	INS	-	GGT	GGT			2011-2278:2012-1320-T	g.chr18:74679360_74679361insGGT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
STK11	6794	broad.mit.edu	37	19	1206797	1206797	+	5'UTR	DEL	T	-	-			2011-2278:2012-1320-T	g.chr19:1206797delT	uc002lrl.1	+	1						NM_000455	NP_000446
GNG7	2788	broad.mit.edu	37	19	2575736	2575737	+	Intron	INS	-	AG	AG			2011-2278:2012-1320-T	g.chr19:2575736_2575737insAG	uc002lwd.2	-							NM_052847	NP_443079
HDGFRP2	84717	broad.mit.edu	37	19	4493132	4493133	+	Intron	DEL	TT	-	-			2011-2278:2012-1320-T	g.chr19:4493132_4493133delTT	uc002mao.2	+						HDGFRP2_uc002map.2_Intron|HDGFRP2_uc010dtz.1_Intron	NM_001001520	NP_001001520
INSR	3643	broad.mit.edu	37	19	7198025	7198028	+	Intron	DEL	GTGT	-	-			2011-2278:2012-1320-T	g.chr19:7198025_7198028delGTGT	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
FCER2	2208	broad.mit.edu	37	19	7753925	7753925	+	3'UTR	DEL	T	-	-			2011-2278:2012-1320-T	g.chr19:7753925delT	uc002mhn.2	-	11					FCER2_uc010xjs.1_3'UTR|FCER2_uc010xjt.1_3'UTR|FCER2_uc002mhm.2_3'UTR	NM_002002	NP_001993
GP6	51206	broad.mit.edu	37	19	55544891	55544895	+	Intron	DEL	TTGTG	-	-	rs111445348		2011-2278:2012-1320-T	g.chr19:55544891_55544895delTTGTG	uc002qik.2	-						GP6_uc002qil.2_Intron|GP6_uc010esq.2_Intron|RDH13_uc010esr.1_Intron	NM_016363	NP_057447
U2AF2	11338	broad.mit.edu	37	19	56181864	56181865	+	Intron	INS	-	C	C			2011-2278:2012-1320-T	g.chr19:56181864_56181865insC	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
PXDN	7837	broad.mit.edu	37	2	1715275	1715276	+	Intron	DEL	CT	-	-			2011-2278:2012-1320-T	g.chr2:1715275_1715276delCT	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
DNMT3A	1788	broad.mit.edu	37	2	25475639	25475639	+	Intron	DEL	A	-	-			2011-2278:2012-1320-T	g.chr2:25475639delA	uc002rgc.2	-						DNMT3A_uc002rgd.2_Intron|DNMT3A_uc010eyi.2_Intron|DNMT3A_uc002rgb.2_5'Flank	NM_022552	NP_072046
DYSF	8291	broad.mit.edu	37	2	71845221	71845222	+	Intron	INS	-	GT	GT	rs141055082	by1000genomes	2011-2278:2012-1320-T	g.chr2:71845221_71845222insGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845457	71845458	+	Intron	DEL	AT	-	-			2011-2278:2012-1320-T	g.chr2:71845457_71845458delAT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845581	71845582	+	Intron	INS	-	G	G	rs150257500		2011-2278:2012-1320-T	g.chr2:71845581_71845582insG	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845644	71845645	+	Intron	DEL	GT	-	-			2011-2278:2012-1320-T	g.chr2:71845644_71845645delGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
RMND5A	64795	broad.mit.edu	37	2	87623776	87623776	+	Intron	DEL	A	-	-			2011-2278:2012-1320-T	g.chr2:87623776delA	uc002srs.3	+								
HDAC4	9759	broad.mit.edu	37	2	240154447	240154448	+	Intron	INS	-	G	G	rs66503356		2011-2278:2012-1320-T	g.chr2:240154447_240154448insG	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
GMEB2	26205	broad.mit.edu	37	20	62233150	62233151	+	Intron	INS	-	T	T			2011-2278:2012-1320-T	g.chr20:62233150_62233151insT	uc002yfp.1	-						GMEB2_uc002yfo.1_Intron|GMEB2_uc002yfq.1_Intron	NM_012384	NP_036516
RRP1	8568	broad.mit.edu	37	21	45207072	45207073	+	5'Flank	DEL	CA	-	-			2011-2278:2012-1320-T	g.chr21:45207072_45207073delCA	uc002zds.2	+						RRP1_uc011aez.1_5'Flank|RRP1_uc010gpk.1_5'Flank	NM_003683	NP_003674
IL17RA	23765	broad.mit.edu	37	22	17585123	17585124	+	Intron	DEL	GT	-	-	rs112246156		2011-2278:2012-1320-T	g.chr22:17585123_17585124delGT	uc002zly.2	+						IL17RA_uc010gqt.2_Intron	NM_014339	NP_055154
PIK3CA	5290	broad.mit.edu	37	3	178937631	178937631	+	Intron	DEL	A	-	-			2011-2278:2012-1320-T	g.chr3:178937631delA	uc003fjk.2	+							NM_006218	NP_006209
CEP72	55722	broad.mit.edu	37	5	650344	650344	+	Intron	DEL	G	-	-			2011-2278:2012-1320-T	g.chr5:650344delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650362	650363	+	Intron	DEL	TG	-	-			2011-2278:2012-1320-T	g.chr5:650362_650363delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650398	650399	+	Intron	INS	-	G	G			2011-2278:2012-1320-T	g.chr5:650398_650399insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651259	651260	+	Intron	INS	-	TG	TG	rs72148198		2011-2278:2012-1320-T	g.chr5:651259_651260insTG	uc003jbf.2	+							NM_018140	NP_060610
ADAMTS16	170690	broad.mit.edu	37	5	5305498	5305499	+	Intron	INS	-	C	C			2011-2278:2012-1320-T	g.chr5:5305498_5305499insC	uc003jdl.2	+							NM_139056	NP_620687
PDZD2	23037	broad.mit.edu	37	5	32002842	32002843	+	Intron	INS	-	A	A			2011-2278:2012-1320-T	g.chr5:32002842_32002843insA	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
PIK3R1	5295	broad.mit.edu	37	5	67594399	67594400	+	3'UTR	INS	-	A	A	rs36055833		2011-2278:2012-1320-T	g.chr5:67594399_67594400insA	uc003jva.2	+	16					PIK3R1_uc003jvb.2_3'UTR|PIK3R1_uc003jvc.2_3'UTR|PIK3R1_uc003jvd.2_3'UTR|PIK3R1_uc003jve.2_3'UTR	NM_181523	NP_852664
HLA-F	3134	broad.mit.edu	37	6	29692430	29692441	+	Intron	DEL	AATTTCTGAGGG	-	-	rs1632952;rs72366349;rs41554217;rs41556013;rs41556914;rs41555914;rs41563314;rs41550116;rs41558818		2011-2278:2012-1320-T	g.chr6:29692430_29692441delAATTTCTGAGGG	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-G	3135	broad.mit.edu	37	6	29895566	29895567	+	Intron	INS	-	G	G	rs140095367	by1000genomes	2011-2278:2012-1320-T	g.chr6:29895566_29895567insG	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_RNA	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29909770	29909772	+	Intron	DEL	AAC	-	-	rs67139508;rs71999680		2011-2278:2012-1320-T	g.chr6:29909770_29909772delAAC	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
STX7	8417	broad.mit.edu	37	6	132812104	132812105	+	Intron	INS	-	CAGCA	CAGCA	rs72265615		2011-2278:2012-1320-T	g.chr6:132812104_132812105insCAGCA	uc003qdg.2	-						STX7_uc011ecg.1_Intron|STX7_uc011ech.1_Intron	NM_003569	NP_003560
SYNE1	23345	broad.mit.edu	37	6	152639143	152639143	+	Intron	DEL	T	-	-			2011-2278:2012-1320-T	g.chr6:152639143delT	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kiz.2_Intron	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169015194	169015195	+	Intron	INS	-	GG	GG	rs72247468		2011-2278:2012-1320-T	g.chr6:169015194_169015195insGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
HEATR2	54919	broad.mit.edu	37	7	782046	782047	+	Intron	INS	-	T	T	rs11411774;rs34977311		2011-2278:2012-1320-T	g.chr7:782046_782047insT	uc010krz.1	+						HEATR2_uc003siz.2_Intron	NM_017802	NP_060272
ETV1	2115	broad.mit.edu	37	7	14028861	14028861	+	Intron	DEL	A	-	-	rs11328804		2011-2278:2012-1320-T	g.chr7:14028861delA	uc011jxq.1	-						ETV1_uc011jxn.1_5'Flank|ETV1_uc011jxo.1_5'Flank|ETV1_uc011jxp.1_5'Flank|ETV1_uc003ssw.3_Intron|ETV1_uc003ssx.2_Intron|ETV1_uc011jxr.1_Intron|ETV1_uc011jxs.1_Intron	NM_004956	NP_004947
CNTNAP2	26047	broad.mit.edu	37	7	145813628	145813628	+	5'UTR	DEL	T	-	-			2011-2278:2012-1320-T	g.chr7:145813628delT	uc003weu.1	+	1						NM_014141	NP_054860
PTPRN2	5799	broad.mit.edu	37	7	157449993	157449996	+	Intron	DEL	ACAC	-	-			2011-2278:2012-1320-T	g.chr7:157449993_157449996delACAC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TRAPPC9	83696	broad.mit.edu	37	8	141167288	141167288	+	Intron	DEL	T	-	-			2011-2278:2012-1320-T	g.chr8:141167288delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
POMT1	10585	broad.mit.edu	37	9	134391427	134391428	+	Intron	INS	-	TA	TA	rs74207135		2011-2278:2012-1320-T	g.chr9:134391427_134391428insTA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
CSF2RA	1438	broad.mit.edu	37	X	1386960	1386961	+	5'Flank	DEL	TG	-	-			2011-2278:2012-1320-T	g.chrX:1386960_1386961delTG	uc010nct.2	+						CSF2RA_uc011mhb.1_5'Flank|CSF2RA_uc004cpq.2_5'Flank|CSF2RA_uc004cpn.2_5'Flank|CSF2RA_uc004cpo.2_5'Flank|CSF2RA_uc010ncu.2_5'Flank|CSF2RA_uc011mhc.1_5'Flank|CSF2RA_uc004cpp.2_5'Flank	NM_001161529	NP_001155001
IL1RAPL2	26280	broad.mit.edu	37	X	104006560	104006562	+	Intron	DEL	CTC	-	-			2011-2278:2012-1320-T	g.chrX:104006560_104006562delCTC	uc004elz.1	+							NM_017416	NP_059112
SCNN1D	6339	broad.mit.edu	37	1	1224736	1224737	+	Intron	DEL	CC	-	-			2011-2280:2012-366-T	g.chr1:1224736_1224737delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
CASZ1	54897	broad.mit.edu	37	1	10804785	10804788	+	Intron	DEL	GGGC	-	-	rs148489185		2011-2280:2012-366-T	g.chr1:10804785_10804788delGGGC	uc001aro.2	-						CASZ1_uc001arp.1_Intron	NM_001079843	NP_001073312
NOTCH2	4853	broad.mit.edu	37	1	120611467	120611467	+	Intron	DEL	C	-	-	rs113675536		2011-2280:2012-366-T	g.chr1:120611467delC	uc001eik.2	-						NOTCH2_uc001eil.2_Intron|NOTCH2_uc001eim.3_Intron	NM_024408	NP_077719
FAM5B	57795	broad.mit.edu	37	1	177242774	177242774	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr1:177242774delA	uc001glf.2	+						FAM5B_uc010pna.1_Intron|FAM5B_uc001glg.2_Intron	NM_021165	NP_066988
USH2A	7399	broad.mit.edu	37	1	215933255	215933255	+	Intron	DEL	C	-	-			2011-2280:2012-366-T	g.chr1:215933255delC	uc001hku.1	-							NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216019046	216019046	+	Intron	DEL	C	-	-			2011-2280:2012-366-T	g.chr1:216019046delC	uc001hku.1	-							NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216256672	216256672	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr1:216256672delA	uc001hku.1	-							NM_206933	NP_996816
USH2A	7399	broad.mit.edu	37	1	216405236	216405236	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr1:216405236delA	uc001hku.1	-						USH2A_uc001hkv.2_Intron	NM_206933	NP_996816
DISC1	27185	broad.mit.edu	37	1	231868852	231868853	+	Intron	INS	-	A	A			2011-2280:2012-366-T	g.chr1:231868852_231868853insA	uc001huz.2	+						TSNAX-DISC1_uc010pwf.1_Intron|TSNAX-DISC1_uc010pwg.1_Intron|TSNAX-DISC1_uc010pwh.1_Intron|TSNAX-DISC1_uc010pwi.1_Intron|TSNAX-DISC1_uc010pwj.1_Intron|TSNAX-DISC1_uc010pwk.1_Intron|TSNAX-DISC1_uc010pwl.1_Intron|DISC1_uc010pwo.1_Intron|DISC1_uc010pwp.1_Intron|DISC1_uc010pwq.1_Intron|DISC1_uc010pwr.1_Intron|DISC1_uc010pws.1_Intron|DISC1_uc010pwt.1_Intron|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_Intron|DISC1_uc010pww.1_Intron|DISC1_uc010pwx.1_Intron|DISC1_uc010pwy.1_Intron|DISC1_uc010pwz.1_Intron|DISC1_uc010pxa.1_Intron|DISC1_uc001huy.2_Intron|DISC1_uc010pxb.1_Intron|DISC1_uc010pxc.1_Intron|DISC1_uc010pxd.1_Intron|DISC1_uc010pxe.1_Intron|DISC1_uc009xfr.2_Intron|DISC1_uc010pxf.1_Intron|DISC1_uc010pxg.1_Intron|DISC1_uc010pxh.1_Intron|DISC1_uc010pxi.1_Intron|DISC1_uc010pxj.1_Intron|DISC1_uc010pxk.1_Intron|DISC1_uc010pxl.1_Intron|DISC1_uc010pxm.1_Intron|DISC1_uc010pxn.1_Intron|DISC1_uc001hva.2_Intron	NM_018662	NP_061132
DISC1	27185	broad.mit.edu	37	1	231868853	231868854	+	Intron	INS	-	GA	GA			2011-2280:2012-366-T	g.chr1:231868853_231868854insGA	uc001huz.2	+						TSNAX-DISC1_uc010pwf.1_Intron|TSNAX-DISC1_uc010pwg.1_Intron|TSNAX-DISC1_uc010pwh.1_Intron|TSNAX-DISC1_uc010pwi.1_Intron|TSNAX-DISC1_uc010pwj.1_Intron|TSNAX-DISC1_uc010pwk.1_Intron|TSNAX-DISC1_uc010pwl.1_Intron|DISC1_uc010pwo.1_Intron|DISC1_uc010pwp.1_Intron|DISC1_uc010pwq.1_Intron|DISC1_uc010pwr.1_Intron|DISC1_uc010pws.1_Intron|DISC1_uc010pwt.1_Intron|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_Intron|DISC1_uc010pww.1_Intron|DISC1_uc010pwx.1_Intron|DISC1_uc010pwy.1_Intron|DISC1_uc010pwz.1_Intron|DISC1_uc010pxa.1_Intron|DISC1_uc001huy.2_Intron|DISC1_uc010pxb.1_Intron|DISC1_uc010pxc.1_Intron|DISC1_uc010pxd.1_Intron|DISC1_uc010pxe.1_Intron|DISC1_uc009xfr.2_Intron|DISC1_uc010pxf.1_Intron|DISC1_uc010pxg.1_Intron|DISC1_uc010pxh.1_Intron|DISC1_uc010pxi.1_Intron|DISC1_uc010pxj.1_Intron|DISC1_uc010pxk.1_Intron|DISC1_uc010pxl.1_Intron|DISC1_uc010pxm.1_Intron|DISC1_uc010pxn.1_Intron|DISC1_uc001hva.2_Intron	NM_018662	NP_061132
CNST	163882	broad.mit.edu	37	1	246783290	246783291	+	Intron	DEL	CT	-	-			2011-2280:2012-366-T	g.chr1:246783290_246783291delCT	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
IDI1	3422	broad.mit.edu	37	10	1093539	1093540	+	Intron	INS	-	CCGT	CCGT			2011-2280:2012-366-T	g.chr10:1093539_1093540insCCGT	uc001iga.2	-						IDI1_uc001ifz.2_5'Flank|IDI1_uc001igb.2_Intron|IDI1_uc001igc.2_Intron|uc001igd.2_5'Flank	NM_004508	NP_004499
PCDH15	65217	broad.mit.edu	37	10	55945034	55945034	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr10:55945034delA	uc001jju.1	-						PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Intron|PCDH15_uc010qhw.1_Intron|PCDH15_uc010qhx.1_Intron|PCDH15_uc010qhy.1_Intron|PCDH15_uc010qhz.1_Intron|PCDH15_uc010qia.1_Intron|PCDH15_uc010qib.1_Intron|PCDH15_uc001jjw.2_Intron	NM_033056	NP_149045
CCDC6	8030	broad.mit.edu	37	10	61641782	61641783	+	Intron	DEL	CG	-	-	rs71185290;rs28723397		2011-2280:2012-366-T	g.chr10:61641782_61641783delCG	uc001jks.3	-							NM_005436	NP_005427
KIAA1274	27143	broad.mit.edu	37	10	72299898	72299899	+	Intron	DEL	GT	-	-			2011-2280:2012-366-T	g.chr10:72299898_72299899delGT	uc001jrd.3	+						KIAA1274_uc001jre.3_Intron	NM_014431	NP_055246
ODF3	113746	broad.mit.edu	37	11	196470	196471	+	5'Flank	INS	-	G	G			2011-2280:2012-366-T	g.chr11:196470_196471insG	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
ODF3	113746	broad.mit.edu	37	11	196482	196483	+	5'Flank	INS	-	A	A	rs113228320		2011-2280:2012-366-T	g.chr11:196482_196483insA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
PLEKHA7	144100	broad.mit.edu	37	11	16803673	16803674	+	Intron	INS	-	AC	AC			2011-2280:2012-366-T	g.chr11:16803673_16803674insAC	uc010rcu.1	-						uc009ygt.2_5'Flank	NM_175058	NP_778228
MRE11A	4361	broad.mit.edu	37	11	94209742	94209742	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr11:94209742delT	uc001peu.2	-						MRE11A_uc001pev.2_Intron|MRE11A_uc009ywj.2_Intron	NM_005591	NP_005582
CACNA2D4	93589	broad.mit.edu	37	12	1980269	1980271	+	Intron	DEL	TGC	-	-			2011-2280:2012-366-T	g.chr12:1980269_1980271delTGC	uc001qjp.2	-						CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952
PIK3C2G	5288	broad.mit.edu	37	12	18801140	18801141	+	3'UTR	INS	-	T	T			2011-2280:2012-366-T	g.chr12:18801140_18801141insT	uc001rdt.2	+	32					PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_3'UTR|PIK3C2G_uc010sic.1_3'UTR	NM_004570	NP_004561
LRRK2	120892	broad.mit.edu	37	12	40668637	40668637	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr12:40668637delT	uc001rmg.3	+						LRRK2_uc001rmh.1_Intron	NM_198578	NP_940980
MDM2	4193	broad.mit.edu	37	12	69229771	69229771	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr12:69229771delT	uc001sui.2	+						MDM2_uc009zri.2_Intron|MDM2_uc009zqx.2_Intron|MDM2_uc009zqw.2_Intron|MDM2_uc001suk.2_Intron|MDM2_uc001sun.3_Intron|MDM2_uc009zqz.2_Intron|MDM2_uc009zra.2_Intron|MDM2_uc001sum.1_Intron|MDM2_uc009zrd.2_Intron|MDM2_uc009zrc.2_Intron|MDM2_uc009zre.2_Intron|MDM2_uc009zrf.2_Intron|MDM2_uc001suo.2_Intron|MDM2_uc009zrg.2_Intron|MDM2_uc009zrh.2_Intron	NM_002392	NP_002383
NAV3	89795	broad.mit.edu	37	12	78225000	78225001	+	5'Flank	DEL	AG	-	-			2011-2280:2012-366-T	g.chr12:78225000_78225001delAG	uc001syp.2	+						NAV3_uc001syo.2_5'Flank	NM_014903	NP_055718
SYT1	6857	broad.mit.edu	37	12	79701481	79701481	+	Intron	DEL	G	-	-			2011-2280:2012-366-T	g.chr12:79701481delG	uc001sys.2	+						SYT1_uc001syt.2_Intron|SYT1_uc001syu.2_Intron|SYT1_uc001syv.2_Intron	NM_001135805	NP_001129277
PTPN11	5781	broad.mit.edu	37	12	112939864	112939864	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr12:112939864delT	uc001ttx.2	+							NM_002834	NP_002825
PIWIL1	9271	broad.mit.edu	37	12	130837974	130837974	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr12:130837974delT	uc001uik.2	+						PIWIL1_uc001uij.1_Intron	NM_004764	NP_004755
FLT3	2322	broad.mit.edu	37	13	28589662	28589662	+	Intron	DEL	C	-	-	rs4497507	by1000genomes	2011-2280:2012-366-T	g.chr13:28589662delC	uc001urw.2	-						FLT3_uc010aao.2_Intron|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110
FLT3	2322	broad.mit.edu	37	13	28636095	28636096	+	Frame_Shift_Ins	INS	-	T	T			2011-2280:2012-366-T	g.chr13:28636095_28636096insT	uc001urw.2	-	3	358_359	c.276_277insA	c.(274-279)CAAGTGfs	p.Q92fs	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Frame_Shift_Ins_p.Q92fs	NM_004119	NP_004110
MTUS2	23281	broad.mit.edu	37	13	30065974	30065975	+	Intron	DEL	GT	-	-			2011-2280:2012-366-T	g.chr13:30065974_30065975delGT	uc001usl.3	+						MTUS2_uc001usm.3_Intron|MTUS2_uc010aau.2_Intron	NM_001033602	NP_001028774
CDADC1	81602	broad.mit.edu	37	13	49829945	49829945	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr13:49829945delT	uc001vcu.2	+						CDADC1_uc001vcs.1_Intron|CDADC1_uc001vct.1_Intron|CDADC1_uc010tgk.1_Intron|CDADC1_uc001vcv.2_Intron	NM_030911	NP_112173
MCF2L	23263	broad.mit.edu	37	13	113712515	113712515	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr13:113712515delT	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron|MCF2L_uc001vst.1_Intron	NM_001112732	NP_001106203
RASA3	22821	broad.mit.edu	37	13	114799044	114799045	+	Intron	INS	-	C	C	rs147187415	by1000genomes	2011-2280:2012-366-T	g.chr13:114799044_114799045insC	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron|RASA3_uc010aha.1_Intron	NM_007368	NP_031394
SYNE2	23224	broad.mit.edu	37	14	64450478	64450478	+	Frame_Shift_Del	DEL	A	-	-			2011-2280:2012-366-T	g.chr14:64450478delA	uc001xgm.2	+	18	2255	c.2025delA	c.(2023-2025)ATAfs	p.I675fs	SYNE2_uc001xgl.2_Frame_Shift_Del_p.I675fs	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64540965	64540966	+	Intron	DEL	GA	-	-			2011-2280:2012-366-T	g.chr14:64540965_64540966delGA	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_5'Flank|SYNE2_uc010apw.1_Intron|SYNE2_uc010apx.1_Intron	NM_015180	NP_055995
GALNTL1	57452	broad.mit.edu	37	14	69806342	69806342	+	Intron	DEL	C	-	-			2011-2280:2012-366-T	g.chr14:69806342delC	uc010aqu.1	+						GALNTL1_uc001xla.1_Intron|GALNTL1_uc001xlb.1_Intron	NM_020692	NP_065743
TRIP11	9321	broad.mit.edu	37	14	92442388	92442389	+	Intron	INS	-	T	T			2011-2280:2012-366-T	g.chr14:92442388_92442389insT	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
DICER1	23405	broad.mit.edu	37	14	95583088	95583088	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr14:95583088delA	uc001ydw.2	-						DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron	NM_030621	NP_085124
GABRB3	2562	broad.mit.edu	37	15	26812713	26812713	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr15:26812713delA	uc001zaz.2	-						GABRB3_uc010uae.1_Intron|GABRB3_uc001zba.2_Intron|GABRB3_uc001zbb.2_Intron	NM_000814	NP_000805
MGRN1	23295	broad.mit.edu	37	16	4728442	4728442	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr16:4728442delA	uc002cwz.2	+						MGRN1_uc002cxa.2_Intron|MGRN1_uc010btx.2_Intron|MGRN1_uc010btw.2_Intron|MGRN1_uc002cxb.2_Intron|MGRN1_uc010uxo.1_Intron|MGRN1_uc010uxp.1_Intron|MGRN1_uc010uxq.1_Intron	NM_001142290	NP_001135762
HYDIN	54768	broad.mit.edu	37	16	70884614	70884614	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr16:70884614delA	uc002ezr.2	-						HYDIN_uc010cfy.2_Intron	NM_032821	NP_116210
TP53	7157	broad.mit.edu	37	17	7573944	7573944	+	Frame_Shift_Del	DEL	C	-	-			2011-2280:2012-366-T	g.chr17:7573944delC	uc002gim.2	-	10	1277	c.1083delG	c.(1081-1083)GGGfs	p.G361fs	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Frame_Shift_Del_p.G229fs|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Frame_Shift_Del_p.G361fs	NM_001126112	NP_001119584
MYH8	4626	broad.mit.edu	37	17	10302060	10302061	+	Intron	INS	-	A	A			2011-2280:2012-366-T	g.chr17:10302060_10302061insA	uc002gmm.2	-						uc002gml.1_Intron	NM_002472	NP_002463
NF1	4763	broad.mit.edu	37	17	29528326	29528326	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr17:29528326delT	uc002hgg.2	+						NF1_uc002hge.1_Intron|NF1_uc002hgf.1_Intron|NF1_uc002hgh.2_Intron|NF1_uc010csn.1_Intron	NM_001042492	NP_001035957
NF1	4763	broad.mit.edu	37	17	29533435	29533435	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr17:29533435delT	uc002hgg.2	+						NF1_uc002hge.1_Intron|NF1_uc002hgf.1_Intron|NF1_uc002hgh.2_Intron|NF1_uc010csn.1_Intron	NM_001042492	NP_001035957
STAT3	6774	broad.mit.edu	37	17	40468878	40468879	+	Frame_Shift_Ins	INS	-	G	G			2011-2280:2012-366-T	g.chr17:40468878_40468879insG	uc002hzl.1	-	23	2425_2426	c.2185_2186insC	c.(2185-2187)CGCfs	p.R729fs	STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Frame_Shift_Ins_p.R728fs|STAT3_uc010wgh.1_Frame_Shift_Ins_p.R631fs|STAT3_uc002hzn.1_Frame_Shift_Ins_p.R729fs|STAT3_uc010cyf.1_5'Flank	NM_139276	NP_644805
PRKCA	5578	broad.mit.edu	37	17	64685086	64685088	+	In_Frame_Del	DEL	AAG	-	-			2011-2280:2012-366-T	g.chr17:64685086_64685088delAAG	uc002jfp.1	+	8	883_885	c.839_841delAAG	c.(838-843)CAAGAA>CAA	p.E282del	PRKCA_uc002jfo.1_In_Frame_Del_p.E153del	NM_002737	NP_002728
EIF4A3	9775	broad.mit.edu	37	17	78109723	78109723	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr17:78109723delA	uc010wuc.1	-						EIF4A3_uc002jxs.2_Intron	NM_014740	NP_055555
PIK3C3	5289	broad.mit.edu	37	18	39567580	39567580	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr18:39567580delA	uc002lap.2	+						PIK3C3_uc010xcl.1_Intron	NM_002647	NP_002638
SETBP1	26040	broad.mit.edu	37	18	42260904	42260904	+	5'UTR	DEL	T	-	-	rs77168280		2011-2280:2012-366-T	g.chr18:42260904delT	uc010dni.2	+	1					SETBP1_uc002lay.2_Intron	NM_015559	NP_056374
SETBP1	26040	broad.mit.edu	37	18	42618442	42618442	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr18:42618442delT	uc010dni.2	+							NM_015559	NP_056374
KIAA1468	57614	broad.mit.edu	37	18	59922625	59922625	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr18:59922625delT	uc002lil.2	+						KIAA1468_uc002lik.1_Intron|KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
KIAA1468	57614	broad.mit.edu	37	18	59942776	59942776	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr18:59942776delT	uc002lil.2	+						KIAA1468_uc002lik.1_Frame_Shift_Del_p.F1009fs|KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
SBNO2	22904	broad.mit.edu	37	19	1166230	1166231	+	Intron	INS	-	T	T	rs150401110;rs66492416		2011-2280:2012-366-T	g.chr19:1166230_1166231insT	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
ZNF554	115196	broad.mit.edu	37	19	2818547	2818548	+	5'Flank	INS	-	C	C			2011-2280:2012-366-T	g.chr19:2818547_2818548insC	uc002lwm.2	+						ZNF554_uc002lwl.2_5'Flank	NM_001102651	NP_001096121
NLRP12	91662	broad.mit.edu	37	19	54297233	54297233	+	3'UTR	DEL	G	-	-			2011-2280:2012-366-T	g.chr19:54297233delG	uc002qch.3	-	10					NLRP12_uc010eqw.2_3'UTR|NLRP12_uc002qci.3_3'UTR|NLRP12_uc002qcj.3_3'UTR|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_3'UTR	NM_144687	NP_653288
LILRA3	11026	broad.mit.edu	37	19	54804856	54804857	+	5'Flank	DEL	CT	-	-	rs111829347		2011-2280:2012-366-T	g.chr19:54804856_54804857delCT	uc002qfd.2	-						LILRA6_uc002qew.1_5'Flank|LILRA3_uc010erk.2_5'Flank	NM_006865	NP_006856
LILRB1	10859	broad.mit.edu	37	19	55141671	55141672	+	Intron	INS	-	C	C	rs113678228		2011-2280:2012-366-T	g.chr19:55141671_55141672insC	uc002qgj.2	+						LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_5'Flank|LILRB1_uc002qgk.2_5'Flank|LILRB1_uc002qgm.2_5'Flank|LILRB1_uc010erq.2_5'Flank|LILRB1_uc010err.2_5'Flank	NM_006669	NP_006660
SNTG2	54221	broad.mit.edu	37	2	1285182	1285183	+	Intron	DEL	TG	-	-			2011-2280:2012-366-T	g.chr2:1285182_1285183delTG	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
TSSC1	7260	broad.mit.edu	37	2	3299877	3299878	+	Intron	DEL	AC	-	-			2011-2280:2012-366-T	g.chr2:3299877_3299878delAC	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
WDR35	57539	broad.mit.edu	37	2	20185258	20185258	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr2:20185258delA	uc002rdi.2	-						WDR35_uc002rdj.2_Intron|WDR35_uc010ext.2_Intron	NM_001006657	NP_001006658
FANCL	55120	broad.mit.edu	37	2	58392827	58392827	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr2:58392827delA	uc002rzw.3	-						FANCL_uc002rzx.3_Intron|FANCL_uc010fce.2_Intron|FANCL_uc010fcf.1_Intron	NM_018062	NP_060532
CTNNA2	1496	broad.mit.edu	37	2	80531575	80531575	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr2:80531575delA	uc010ysh.1	+						CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_5'Flank|LRRTM1_uc002sok.1_5'Flank	NM_004389	NP_004380
IL1R2	7850	broad.mit.edu	37	2	102608535	102608536	+	Intron	DEL	GA	-	-			2011-2280:2012-366-T	g.chr2:102608535_102608536delGA	uc002tbm.2	+							NM_004633	NP_004624
LRP1B	53353	broad.mit.edu	37	2	141359250	141359251	+	Intron	INS	-	A	A			2011-2280:2012-366-T	g.chr2:141359250_141359251insA	uc002tvj.1	-							NM_018557	NP_061027
STAT1	6772	broad.mit.edu	37	2	191854429	191854429	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr2:191854429delA	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron|STAT1_uc010fsf.1_Intron	NM_007315	NP_009330
CASP8	841	broad.mit.edu	37	2	202149799	202149799	+	Frame_Shift_Del	DEL	T	-	-			2011-2280:2012-366-T	g.chr2:202149799delT	uc002uxr.1	+	9	1272	c.1063delT	c.(1063-1065)TTTfs	p.F355fs	CASP8_uc002uxp.1_Frame_Shift_Del_p.F372fs|CASP8_uc002uxq.1_Frame_Shift_Del_p.F340fs|CASP8_uc002uxt.1_Frame_Shift_Del_p.F414fs|CASP8_uc002uxu.1_RNA|CASP8_uc002uxw.1_Frame_Shift_Del_p.F340fs|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Frame_Shift_Del_p.F271fs	NM_033355	NP_203519
MAP2	4133	broad.mit.edu	37	2	210288885	210288885	+	5'UTR	DEL	C	-	-	rs113563544		2011-2280:2012-366-T	g.chr2:210288885delC	uc002vdc.1	+	1					MAP2_uc002vdd.1_5'UTR	NM_002374	NP_002365
MAP2	4133	broad.mit.edu	37	2	210444613	210444613	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr2:210444613delT	uc002vde.1	+						MAP2_uc002vdc.1_Intron|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron	NM_002374	NP_002365
MAP2	4133	broad.mit.edu	37	2	210575228	210575228	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr2:210575228delT	uc002vde.1	+						MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Intron	NM_002374	NP_002365
ABCA12	26154	broad.mit.edu	37	2	215835140	215835140	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr2:215835140delA	uc002vew.2	-						ABCA12_uc002vev.2_Intron|ABCA12_uc010zjn.1_Intron	NM_173076	NP_775099
ABCA12	26154	broad.mit.edu	37	2	215847133	215847133	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr2:215847133delT	uc002vew.2	-						ABCA12_uc002vev.2_Intron|ABCA12_uc010zjn.1_Intron	NM_173076	NP_775099
SLC4A3	6508	broad.mit.edu	37	2	220501689	220501689	+	Intron	DEL	G	-	-			2011-2280:2012-366-T	g.chr2:220501689delG	uc002vmp.3	+						SLC4A3_uc002vmo.3_Intron|SLC4A3_uc010fwm.2_Intron|SLC4A3_uc010fwn.1_Intron	NM_005070	NP_005061
RAMP1	10267	broad.mit.edu	37	2	238819397	238819408	+	Intron	DEL	AGTCACACACAC	-	-			2011-2280:2012-366-T	g.chr2:238819397_238819408delAGTCACACACAC	uc002vxj.2	+							NM_005855	NP_005846
THAP4	51078	broad.mit.edu	37	2	242559426	242559427	+	Intron	INS	-	TC	TC			2011-2280:2012-366-T	g.chr2:242559426_242559427insTC	uc002wbt.2	-						THAP4_uc002wbs.2_5'Flank	NM_015963	NP_057047
ADAMTS5	11096	broad.mit.edu	37	21	28338958	28338965	+	5'UTR	DEL	GGGGGGGA	-	-	rs11427798;rs71314106		2011-2280:2012-366-T	g.chr21:28338958_28338965delGGGGGGGA	uc002ymg.2	-	1						NM_007038	NP_008969
DSCAM	1826	broad.mit.edu	37	21	41427669	41427670	+	Frame_Shift_Del	DEL	TC	-	-			2011-2280:2012-366-T	g.chr21:41427669_41427670delTC	uc002yyq.1	-	29	5469_5470	c.5017_5018delGA	c.(5017-5019)GACfs	p.D1673fs	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380
ELFN2	114794	broad.mit.edu	37	22	37769104	37769104	+	3'UTR	DEL	G	-	-			2011-2280:2012-366-T	g.chr22:37769104delG	uc003asq.3	-	3						NM_052906	NP_443138
EP300	2033	broad.mit.edu	37	22	41487972	41487972	+	5'Flank	DEL	C	-	-			2011-2280:2012-366-T	g.chr22:41487972delC	uc003azl.3	+						MIR1281_hsa-mir-1281|MI0006428_5'Flank	NM_001429	NP_001420
TBC1D22A	25771	broad.mit.edu	37	22	47554525	47554526	+	Intron	DEL	CA	-	-			2011-2280:2012-366-T	g.chr22:47554525_47554526delCA	uc003bib.2	+						TBC1D22A_uc010haf.2_Intron|TBC1D22A_uc003bic.2_Intron|TBC1D22A_uc003bie.2_Intron|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_Intron|TBC1D22A_uc003bif.2_Intron	NM_014346	NP_055161
PBRM1	55193	broad.mit.edu	37	3	52651438	52651438	+	Frame_Shift_Del	DEL	T	-	-			2011-2280:2012-366-T	g.chr3:52651438delT	uc003des.2	-	14	1670	c.1658delA	c.(1657-1659)AAGfs	p.K553fs	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Frame_Shift_Del_p.K553fs|PBRM1_uc003der.2_Frame_Shift_Del_p.K521fs|PBRM1_uc003det.2_Frame_Shift_Del_p.K568fs|PBRM1_uc003deu.2_Frame_Shift_Del_p.K568fs|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Frame_Shift_Del_p.K553fs|PBRM1_uc010hmk.1_Frame_Shift_Del_p.K553fs|PBRM1_uc003dey.2_Frame_Shift_Del_p.K553fs|PBRM1_uc003dez.1_Frame_Shift_Del_p.K553fs|PBRM1_uc003dfb.1_Frame_Shift_Del_p.K466fs|PBRM1_uc003dfc.2_5'Flank	NM_181042	NP_060635
BBX	56987	broad.mit.edu	37	3	107429275	107429276	+	Intron	DEL	TC	-	-			2011-2280:2012-366-T	g.chr3:107429275_107429276delTC	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Intron|BBX_uc003dwm.3_Intron	NM_001142568	NP_001136040
BBX	56987	broad.mit.edu	37	3	107430302	107430302	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr3:107430302delT	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Intron|BBX_uc003dwm.3_Intron	NM_001142568	NP_001136040
PVRL3	25945	broad.mit.edu	37	3	110790415	110790415	+	5'Flank	DEL	T	-	-			2011-2280:2012-366-T	g.chr3:110790415delT	uc003dxt.1	+						PVRL3_uc003dxu.1_5'Flank	NM_015480	NP_056295
POLQ	10721	broad.mit.edu	37	3	121238933	121238933	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr3:121238933delA	uc003eee.3	-							NM_199420	NP_955452
PDIA5	10954	broad.mit.edu	37	3	122870616	122870617	+	Intron	INS	-	G	G			2011-2280:2012-366-T	g.chr3:122870616_122870617insG	uc003egc.1	+						PDIA5_uc003egd.1_Intron	NM_006810	NP_006801
ZIC4	84107	broad.mit.edu	37	3	147110328	147110328	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr3:147110328delA	uc003ewd.1	-						ZIC4_uc003ewc.1_Intron|ZIC4_uc011bno.1_Intron	NM_032153	NP_115529
GMPS	8833	broad.mit.edu	37	3	155643209	155643209	+	Intron	DEL	C	-	-			2011-2280:2012-366-T	g.chr3:155643209delC	uc003faq.2	+						GMPS_uc011bom.1_Intron	NM_003875	NP_003866
MECOM	2122	broad.mit.edu	37	3	168863932	168863932	+	Intron	DEL	A	-	-	rs76374095	by1000genomes	2011-2280:2012-366-T	g.chr3:168863932delA	uc003ffi.3	-						MECOM_uc003ffj.3_Intron|MECOM_uc011bpi.1_Intron|MECOM_uc003ffn.3_Intron|MECOM_uc003ffk.2_Intron|MECOM_uc003ffl.2_Intron|MECOM_uc011bpj.1_Intron|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Intron|MECOM_uc003ffm.1_5'Flank|MECOM_uc003ffo.1_RNA	NM_005241	NP_005232
MECOM	2122	broad.mit.edu	37	3	169381815	169381815	+	5'Flank	DEL	A	-	-			2011-2280:2012-366-T	g.chr3:169381815delA	uc011bpj.1	-						MECOM_uc011bpk.1_5'Flank|MECOM_uc010hwn.2_5'Flank|MECOM_uc011bpl.1_5'Flank	NM_004991	NP_004982
PIK3CA	5290	broad.mit.edu	37	3	178867258	178867258	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr3:178867258delT	uc003fjk.2	+						uc003fjj.2_5'Flank	NM_006218	NP_006209
PIK3CA	5290	broad.mit.edu	37	3	178937631	178937631	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr3:178937631delA	uc003fjk.2	+							NM_006218	NP_006209
ETV5	2119	broad.mit.edu	37	3	185827203	185827203	+	5'Flank	DEL	A	-	-			2011-2280:2012-366-T	g.chr3:185827203delA	uc003fpz.2	-						ETV5_uc003fpy.2_5'Flank	NM_004454	NP_004445
CRMP1	1400	broad.mit.edu	37	4	5858673	5858675	+	Intron	DEL	CAT	-	-			2011-2280:2012-366-T	g.chr4:5858673_5858675delCAT	uc003gip.2	-						CRMP1_uc003gin.1_Intron|CRMP1_uc003giq.2_Intron|CRMP1_uc003gir.2_Intron|CRMP1_uc003gis.2_Intron	NM_001313	NP_001304
BST1	683	broad.mit.edu	37	4	15706135	15706136	+	Intron	DEL	GT	-	-			2011-2280:2012-366-T	g.chr4:15706135_15706136delGT	uc003goh.3	+							NM_004334	NP_004325
RELL1	768211	broad.mit.edu	37	4	37606475	37606476	+	Intron	DEL	AC	-	-			2011-2280:2012-366-T	g.chr4:37606475_37606476delAC	uc003gsz.2	-							NM_001085399	NP_001078868
KCTD8	386617	broad.mit.edu	37	4	44177044	44177044	+	Frame_Shift_Del	DEL	T	-	-			2011-2280:2012-366-T	g.chr4:44177044delT	uc003gwu.2	-	2	1469	c.1185delA	c.(1183-1185)AAAfs	p.K395fs		NM_198353	NP_938167
REST	5978	broad.mit.edu	37	4	57785837	57785837	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr4:57785837delA	uc003hch.2	+						REST_uc003hci.2_Intron|REST_uc010ihf.2_Intron	NM_005612	NP_005603
ANKRD17	26057	broad.mit.edu	37	4	74007867	74007867	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr4:74007867delA	uc003hgp.2	-						ANKRD17_uc003hgo.2_Intron|ANKRD17_uc003hgq.2_Intron|ANKRD17_uc003hgr.2_Intron|ANKRD17_uc011cbd.1_Intron	NM_032217	NP_115593
TET2	54790	broad.mit.edu	37	4	106162145	106162145	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr4:106162145delT	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron|TET2_uc010ilp.1_Intron|TET2_uc003hxi.1_3'UTR	NM_001127208	NP_001120680
CDH10	1008	broad.mit.edu	37	5	24535401	24535402	+	Intron	INS	-	A	A			2011-2280:2012-366-T	g.chr5:24535401_24535402insA	uc003jgr.1	-						CDH10_uc011cnu.1_Intron	NM_006727	NP_006718
PIK3R1	5295	broad.mit.edu	37	5	67587922	67587922	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr5:67587922delT	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron|PIK3R1_uc003jvc.2_Intron|PIK3R1_uc003jvd.2_Intron|PIK3R1_uc003jve.2_5'UTR|PIK3R1_uc011crb.1_5'Flank	NM_181523	NP_852664
MSH3	4437	broad.mit.edu	37	5	80083408	80083409	+	Frame_Shift_Ins	INS	-	T	T			2011-2280:2012-366-T	g.chr5:80083408_80083409insT	uc003kgz.2	+	18	2713_2714	c.2460_2461insT	c.(2458-2463)TCCTTGfs	p.S820fs		NM_002439	NP_002430
FAT2	2196	broad.mit.edu	37	5	150901789	150901789	+	Intron	DEL	A	-	-	rs66949589		2011-2280:2012-366-T	g.chr5:150901789delA	uc003lue.3	-						GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Intron	NM_001447	NP_001438
RANBP17	64901	broad.mit.edu	37	5	170598304	170598305	+	Intron	DEL	TG	-	-			2011-2280:2012-366-T	g.chr5:170598304_170598305delTG	uc003mba.2	+						RANBP17_uc003mbb.2_Intron	NM_022897	NP_075048
ME1	4199	broad.mit.edu	37	6	83926334	83926334	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr6:83926334delA	uc003pjy.2	-						ME1_uc011dzb.1_Intron|ME1_uc011dzc.1_Intron	NM_002395	NP_002386
AIM1	202	broad.mit.edu	37	6	106975081	106975082	+	Intron	INS	-	TA	TA	rs145358428	by1000genomes	2011-2280:2012-366-T	g.chr6:106975081_106975082insTA	uc003prh.2	+							NM_001624	NP_001615
TNFAIP3	7128	broad.mit.edu	37	6	138199945	138199945	+	Frame_Shift_Del	DEL	G	-	-			2011-2280:2012-366-T	g.chr6:138199945delG	uc003qhr.2	+	7	1429	c.1363delG	c.(1363-1365)GGGfs	p.G455fs	TNFAIP3_uc003qhs.2_Frame_Shift_Del_p.G455fs	NM_006290	NP_006281
SYNE1	23345	broad.mit.edu	37	6	152578100	152578100	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr6:152578100delT	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152725240	152725241	+	Intron	DEL	AT	-	-			2011-2280:2012-366-T	g.chr6:152725240_152725241delAT	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152772035	152772035	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr6:152772035delA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qow.2_Intron|SYNE1_uc003qox.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152793344	152793344	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr6:152793344delA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
ADAP1	11033	broad.mit.edu	37	7	945360	945361	+	Intron	INS	-	A	A	rs147722082	by1000genomes	2011-2280:2012-366-T	g.chr7:945360_945361insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PMS2	5395	broad.mit.edu	37	7	6036896	6036896	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr7:6036896delA	uc003spl.2	-						PMS2_uc003spj.2_Intron|PMS2_uc003spk.2_Intron|PMS2_uc011jwl.1_Intron|PMS2_uc010ktg.2_Intron|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Intron	NM_000535	NP_000526
AOAH	313	broad.mit.edu	37	7	36555174	36555174	+	Intron	DEL	C	-	-			2011-2280:2012-366-T	g.chr7:36555174delC	uc003tfh.3	-						AOAH_uc010kxf.2_Intron|AOAH_uc011kba.1_Intron	NM_001637	NP_001628
DTX2	113878	broad.mit.edu	37	7	76116164	76116166	+	Intron	DEL	GCT	-	-	rs57887395;rs79153110	by1000genomes	2011-2280:2012-366-T	g.chr7:76116164_76116166delGCT	uc003uff.3	+						DTX2_uc011kgk.1_Intron|DTX2_uc003ufg.3_Intron|DTX2_uc003ufh.3_Intron|DTX2_uc003ufj.3_Intron	NM_020892	NP_065943
PCLO	27445	broad.mit.edu	37	7	82584850	82584851	+	Frame_Shift_Ins	INS	-	T	T			2011-2280:2012-366-T	g.chr7:82584850_82584851insT	uc003uhx.2	-	5	5707_5708	c.5418_5419insA	c.(5416-5421)AAATCAfs	p.K1806fs	PCLO_uc003uhv.2_Frame_Shift_Ins_p.K1806fs	NM_033026	NP_149015
SMURF1	57154	broad.mit.edu	37	7	98630575	98630575	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr7:98630575delA	uc003upu.1	-						SMURF1_uc003upv.1_Intron|SMURF1_uc003upt.2_Intron|TRRAP_uc003ups.2_RNA	NM_020429	NP_065162
SLC26A3	1811	broad.mit.edu	37	7	107407972	107407972	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr7:107407972delT	uc003ver.2	-						SLC26A3_uc003ves.2_Intron	NM_000111	NP_000102
SLC26A3	1811	broad.mit.edu	37	7	107408128	107408128	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr7:107408128delT	uc003ver.2	-						SLC26A3_uc003ves.2_Intron	NM_000111	NP_000102
LAMB1	3912	broad.mit.edu	37	7	107635419	107635419	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr7:107635419delA	uc003vew.2	-						LAMB1_uc003vev.2_Intron|LAMB1_uc003vex.2_Intron|LAMB1_uc010ljn.1_Intron	NM_002291	NP_002282
BRAF	673	broad.mit.edu	37	7	140434575	140434575	+	Intron	DEL	A	-	-	rs151306633		2011-2280:2012-366-T	g.chr7:140434575delA	uc003vwc.3	-							NM_004333	NP_004324
BRAF	673	broad.mit.edu	37	7	140508254	140508256	+	Intron	DEL	TTT	-	-			2011-2280:2012-366-T	g.chr7:140508254_140508256delTTT	uc003vwc.3	-							NM_004333	NP_004324
MLL3	58508	broad.mit.edu	37	7	151851246	151851246	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr7:151851246delA	uc003wla.2	-						MLL3_uc003wkz.2_Intron|MLL3_uc003wkx.2_Intron|MLL3_uc003wky.2_Intron	NM_170606	NP_733751
MLL3	58508	broad.mit.edu	37	7	151902167	151902167	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr7:151902167delT	uc003wla.2	-						MLL3_uc003wkz.2_Intron	NM_170606	NP_733751
ARHGEF10	9639	broad.mit.edu	37	8	1781173	1781174	+	Intron	INS	-	AGAC	AGAC			2011-2280:2012-366-T	g.chr8:1781173_1781174insAGAC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
RB1CC1	9821	broad.mit.edu	37	8	53547441	53547441	+	Intron	DEL	A	-	-			2011-2280:2012-366-T	g.chr8:53547441delA	uc003xre.3	-						RB1CC1_uc003xrf.3_Intron	NM_014781	NP_055596
RIMS2	9699	broad.mit.edu	37	8	104922315	104922316	+	Intron	DEL	TT	-	-			2011-2280:2012-366-T	g.chr8:104922315_104922316delTT	uc003yls.2	+						RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Intron|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron|RIMS2_uc003ylt.2_5'Flank	NM_014677	NP_055492
RIMS2	9699	broad.mit.edu	37	8	105010355	105010355	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr8:105010355delT	uc003yls.2	+						RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Intron|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492
CSMD3	114788	broad.mit.edu	37	8	113363349	113363350	+	Intron	INS	-	T	T	rs7003308	by1000genomes	2011-2280:2012-366-T	g.chr8:113363349_113363350insT	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
TRAPPC9	83696	broad.mit.edu	37	8	141167393	141167393	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chr8:141167393delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
PLEC	5339	broad.mit.edu	37	8	144993236	144993238	+	In_Frame_Del	DEL	TGG	-	-			2011-2280:2012-366-T	g.chr8:144993236_144993238delTGG	uc003zaf.1	-	32	11332_11334	c.11162_11164delCCA	c.(11161-11166)ACCATG>ATG	p.T3721del	PLEC_uc003zab.1_In_Frame_Del_p.T3584del|PLEC_uc003zac.1_In_Frame_Del_p.T3588del|PLEC_uc003zad.2_In_Frame_Del_p.T3584del|PLEC_uc003zae.1_In_Frame_Del_p.T3552del|PLEC_uc003zag.1_In_Frame_Del_p.T3562del|PLEC_uc003zah.2_In_Frame_Del_p.T3570del|PLEC_uc003zaj.2_In_Frame_Del_p.T3611del	NM_201380	NP_958782
ARHGAP39	80728	broad.mit.edu	37	8	145756685	145756688	+	Intron	DEL	CAGG	-	-	rs72302949		2011-2280:2012-366-T	g.chr8:145756685_145756688delCAGG	uc003zdt.1	-						MGC70857_uc003zdp.1_5'Flank|MGC70857_uc003zdq.1_5'Flank|MGC70857_uc003zdr.1_5'Flank|ARHGAP39_uc011llk.1_Intron|ARHGAP39_uc003zds.1_Intron	NM_025251	NP_079527
ARHGAP39	80728	broad.mit.edu	37	8	145756691	145756693	+	Intron	DEL	AGG	-	-	rs71837446;rs4925831		2011-2280:2012-366-T	g.chr8:145756691_145756693delAGG	uc003zdt.1	-						MGC70857_uc003zdp.1_5'Flank|MGC70857_uc003zdq.1_5'Flank|MGC70857_uc003zdr.1_5'Flank|ARHGAP39_uc011llk.1_Intron|ARHGAP39_uc003zds.1_Intron	NM_025251	NP_079527
FANCC	2176	broad.mit.edu	37	9	97897507	97897508	+	Intron	DEL	TA	-	-			2011-2280:2012-366-T	g.chr9:97897507_97897508delTA	uc004avh.2	-						FANCC_uc004avi.3_Intron	NM_000136	NP_000127
RALGDS	5900	broad.mit.edu	37	9	135999261	135999262	+	5'Flank	INS	-	CA	CA			2011-2280:2012-366-T	g.chr9:135999261_135999262insCA	uc004cco.2	-						RALGDS_uc004ccp.2_5'Flank|RALGDS_uc004ccq.2_5'Flank|RALGDS_uc004ccr.2_Intron|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Intron|RALGDS_uc011mcw.1_Intron	NM_006266	NP_006257
OLFM1	10439	broad.mit.edu	37	9	137983436	137983437	+	Intron	DEL	GT	-	-			2011-2280:2012-366-T	g.chr9:137983436_137983437delGT	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
OLFM1	10439	broad.mit.edu	37	9	137983443	137983444	+	Intron	INS	-	GT	GT	rs112221318	by1000genomes	2011-2280:2012-366-T	g.chr9:137983443_137983444insGT	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
OLFM1	10439	broad.mit.edu	37	9	137983455	137983456	+	Intron	INS	-	CA	CA			2011-2280:2012-366-T	g.chr9:137983455_137983456insCA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
OLFM1	10439	broad.mit.edu	37	9	137983472	137983473	+	Intron	DEL	CT	-	-	rs62636477		2011-2280:2012-366-T	g.chr9:137983472_137983473delCT	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
OLFM1	10439	broad.mit.edu	37	9	137983482	137983483	+	Intron	DEL	CA	-	-			2011-2280:2012-366-T	g.chr9:137983482_137983483delCA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
FANCB	2187	broad.mit.edu	37	X	14868472	14868473	+	Intron	DEL	AA	-	-			2011-2280:2012-366-T	g.chrX:14868472_14868473delAA	uc004cwg.1	-						FANCB_uc004cwh.1_Intron	NM_001018113	NP_001018123
DDX3X	1654	broad.mit.edu	37	X	41193525	41193525	+	Frame_Shift_Del	DEL	A	-	-			2011-2280:2012-366-T	g.chrX:41193525delA	uc004dfe.2	+	1	875	c.20delA	c.(19-21)GAAfs	p.E7fs	DDX3X_uc004dfd.1_RNA|DDX3X_uc010nhf.1_Frame_Shift_Del_p.E7fs|DDX3X_uc004dff.2_Frame_Shift_Del_p.E7fs|DDX3X_uc011mkq.1_Frame_Shift_Del_p.E7fs|DDX3X_uc011mkr.1_Frame_Shift_Del_p.E7fs|DDX3X_uc011mks.1_Frame_Shift_Del_p.E7fs|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_5'Flank	NM_001356	NP_001347
NRK	203447	broad.mit.edu	37	X	105150376	105150376	+	Intron	DEL	T	-	-			2011-2280:2012-366-T	g.chrX:105150376delT	uc004emd.2	+						NRK_uc010npc.1_Intron	NM_198465	NP_940867
NRK	203447	broad.mit.edu	37	X	105156736	105156736	+	Frame_Shift_Del	DEL	A	-	-			2011-2280:2012-366-T	g.chrX:105156736delA	uc004emd.2	+	14	2641	c.2338delA	c.(2338-2340)AAAfs	p.K780fs	NRK_uc010npc.1_Frame_Shift_Del_p.K448fs	NM_198465	NP_940867
PRDM16	63976	broad.mit.edu	37	1	3030870	3030871	+	Intron	DEL	CA	-	-			2011-2281:2012-1329-T	g.chr1:3030870_3030871delCA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
LGR6	59352	broad.mit.edu	37	1	202174135	202174136	+	Intron	INS	-	AA	AA	rs143747075		2011-2281:2012-1329-T	g.chr1:202174135_202174136insAA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174248	202174249	+	Intron	INS	-	AC	AC			2011-2281:2012-1329-T	g.chr1:202174248_202174249insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
FAM101A	144347	broad.mit.edu	37	12	124787399	124787400	+	Intron	INS	-	A	A			2011-2281:2012-1329-T	g.chr12:124787399_124787400insA	uc001ugd.1	+						FAM101A_uc001uge.1_Intron	NM_181709	NP_859060
TNFSF13B	10673	broad.mit.edu	37	13	108930927	108930928	+	Intron	INS	-	C	C			2011-2281:2012-1329-T	g.chr13:108930927_108930928insC	uc001vqr.2	+						TNFSF13B_uc010agj.2_Intron	NM_006573	NP_006564
LMF1	64788	broad.mit.edu	37	16	1011225	1011226	+	Intron	DEL	AC	-	-			2011-2281:2012-1329-T	g.chr16:1011225_1011226delAC	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
CPNE7	27132	broad.mit.edu	37	16	89654262	89654263	+	Intron	INS	-	CACCCCCG	CACCCCCG	rs140122467	by1000genomes	2011-2281:2012-1329-T	g.chr16:89654262_89654263insCACCCCCG	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
CPNE7	27132	broad.mit.edu	37	16	89654263	89654264	+	Intron	INS	-	GTC	GTC	rs140122467	by1000genomes	2011-2281:2012-1329-T	g.chr16:89654263_89654264insGTC	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
DPEP1	1800	broad.mit.edu	37	16	89701076	89701077	+	Intron	INS	-	T	T			2011-2281:2012-1329-T	g.chr16:89701076_89701077insT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
EMR2	30817	broad.mit.edu	37	19	14874678	14874678	+	Intron	DEL	C	-	-			2011-2281:2012-1329-T	g.chr19:14874678delC	uc002mzp.1	-						EMR2_uc010dzs.1_Intron|EMR2_uc010xnw.1_Intron|EMR2_uc002mzo.1_Intron|EMR2_uc002mzq.1_Intron|EMR2_uc002mzr.1_Intron|EMR2_uc002mzs.1_Intron|EMR2_uc002mzt.1_Intron|EMR2_uc002mzu.1_Intron|EMR2_uc010xnx.1_Intron|EMR2_uc010xny.1_Intron	NM_013447	NP_038475
PPP1R12C	54776	broad.mit.edu	37	19	55608737	55608738	+	Intron	INS	-	CAC	CAC			2011-2281:2012-1329-T	g.chr19:55608737_55608738insCAC	uc002qix.2	-						PPP1R12C_uc010yfs.1_Intron|PPP1R12C_uc002qiy.2_Intron	NM_017607	NP_060077
GMEB2	26205	broad.mit.edu	37	20	62239133	62239134	+	Intron	INS	-	CA	CA			2011-2281:2012-1329-T	g.chr20:62239133_62239134insCA	uc002yfp.1	-						GMEB2_uc002yfo.1_5'Flank|GMEB2_uc002yfq.1_Intron	NM_012384	NP_036516
TPPP	11076	broad.mit.edu	37	5	677123	677124	+	Intron	INS	-	A	A			2011-2281:2012-1329-T	g.chr5:677123_677124insA	uc003jbg.3	-						TPPP_uc003jbh.3_Intron	NM_007030	NP_008961
ADAP1	11033	broad.mit.edu	37	7	945113	945114	+	Intron	INS	-	A	A			2011-2281:2012-1329-T	g.chr7:945113_945114insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
CSMD3	114788	broad.mit.edu	37	8	113266654	113266660	+	Intron	DEL	AGGATCT	-	-			2011-2281:2012-1329-T	g.chr8:113266654_113266660delAGGATCT	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
COL22A1	169044	broad.mit.edu	37	8	139817526	139817527	+	Intron	INS	-	GT	GT			2011-2281:2012-1329-T	g.chr8:139817526_139817527insGT	uc003yvd.2	-							NM_152888	NP_690848
OLFM1	10439	broad.mit.edu	37	9	137983482	137983483	+	Intron	DEL	CA	-	-			2011-2281:2012-1329-T	g.chr9:137983482_137983483delCA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
OLFM1	10439	broad.mit.edu	37	9	137983492	137983493	+	Intron	DEL	CA	-	-			2011-2281:2012-1329-T	g.chr9:137983492_137983493delCA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
KIF21B	23046	broad.mit.edu	37	1	200976146	200976147	+	Intron	DEL	AC	-	-			2011-2282:2012-1330-T	g.chr1:200976146_200976147delAC	uc001gvs.1	-						KIF21B_uc001gvr.1_Intron|KIF21B_uc009wzl.1_Intron|KIF21B_uc010ppn.1_Intron|KIF21B_uc001gvt.1_5'Flank	NM_017596	NP_060066
LGR6	59352	broad.mit.edu	37	1	202173569	202173577	+	Intron	DEL	ACACCTCCA	-	-			2011-2282:2012-1330-T	g.chr1:202173569_202173577delACACCTCCA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174053	202174054	+	Intron	DEL	AC	-	-			2011-2282:2012-1330-T	g.chr1:202174053_202174054delAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174494	202174495	+	Intron	DEL	CC	-	-			2011-2282:2012-1330-T	g.chr1:202174494_202174495delCC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174498	202174509	+	Intron	DEL	ACACACACACCT	-	-	rs150017503;rs141873830;rs138471820		2011-2282:2012-1330-T	g.chr1:202174498_202174509delACACACACACCT	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
FAIM3	9214	broad.mit.edu	37	1	207097399	207097400	+	5'Flank	DEL	GT	-	-			2011-2282:2012-1330-T	g.chr1:207097399_207097400delGT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
CCDC6	8030	broad.mit.edu	37	10	61642286	61642290	+	Intron	DEL	AAGGA	-	-			2011-2282:2012-1330-T	g.chr10:61642286_61642290delAAGGA	uc001jks.3	-							NM_005436	NP_005427
CCDC6	8030	broad.mit.edu	37	10	61642300	61642301	+	Intron	DEL	CG	-	-			2011-2282:2012-1330-T	g.chr10:61642300_61642301delCG	uc001jks.3	-							NM_005436	NP_005427
SWAP70	23075	broad.mit.edu	37	11	9727451	9727452	+	Intron	INS	-	T	T			2011-2282:2012-1330-T	g.chr11:9727451_9727452insT	uc001mhw.2	+						SWAP70_uc001mhv.2_Intron|SWAP70_uc001mhx.2_Intron	NM_015055	NP_055870
RB1	5925	broad.mit.edu	37	13	48954159	48954160	+	Intron	INS	-	T	T			2011-2282:2012-1330-T	g.chr13:48954159_48954160insT	uc001vcb.2	+							NM_000321	NP_000312
DECR2	26063	broad.mit.edu	37	16	458213	458214	+	Intron	DEL	CT	-	-			2011-2282:2012-1330-T	g.chr16:458213_458214delCT	uc002chb.2	+						DECR2_uc002chc.2_Intron|DECR2_uc010bqv.2_Intron|DECR2_uc002chd.2_Intron|DECR2_uc002che.1_Intron	NM_020664	NP_065715
ZNF778	197320	broad.mit.edu	37	16	89289322	89289322	+	Intron	DEL	T	-	-			2011-2282:2012-1330-T	g.chr16:89289322delT	uc002fmv.2	+						ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Intron|ZNF778_uc010vpg.1_Intron	NM_182531	NP_872337
TIMM22	29928	broad.mit.edu	37	17	897483	897483	+	5'Flank	DEL	C	-	-	rs111389070		2011-2282:2012-1330-T	g.chr17:897483delC	uc002fsc.2	+							NM_013337	NP_037469
TIMM22	29928	broad.mit.edu	37	17	897591	897591	+	5'Flank	DEL	C	-	-	rs71148412		2011-2282:2012-1330-T	g.chr17:897591delC	uc002fsc.2	+							NM_013337	NP_037469
ABR	29	broad.mit.edu	37	17	1021042	1021043	+	Intron	INS	-	T	T	rs66551865		2011-2282:2012-1330-T	g.chr17:1021042_1021043insT	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
MED1	5469	broad.mit.edu	37	17	37607722	37607722	+	5'Flank	DEL	T	-	-	rs72286452		2011-2282:2012-1330-T	g.chr17:37607722delT	uc002hrv.3	-						MED1_uc010wee.1_5'Flank|MED1_uc002hru.2_5'Flank	NM_004774	NP_004765
TBCD	6904	broad.mit.edu	37	17	80807863	80807864	+	Intron	INS	-	CTCTT	CTCTT			2011-2282:2012-1330-T	g.chr17:80807863_80807864insCTCTT	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
NFATC1	4772	broad.mit.edu	37	18	77177326	77177332	+	Intron	DEL	GGAGATC	-	-	rs71953238		2011-2282:2012-1330-T	g.chr18:77177326_77177332delGGAGATC	uc010xfg.1	+						NFATC1_uc002lnc.1_Intron|NFATC1_uc010xff.1_Intron|NFATC1_uc002lnd.2_Intron|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfi.1_Intron|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Intron|NFATC1_uc002lng.2_Intron|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153
MED16	10025	broad.mit.edu	37	19	878242	878248	+	Intron	DEL	CCCCAGC	-	-	rs72504524		2011-2282:2012-1330-T	g.chr19:878242_878248delCCCCAGC	uc002lqd.1	-						MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Intron|MED16_uc002lqf.2_Intron|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Intron|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472
BMP7	655	broad.mit.edu	37	20	55794255	55794257	+	Intron	DEL	TGG	-	-			2011-2282:2012-1330-T	g.chr20:55794255_55794257delTGG	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
EEF1A2	1917	broad.mit.edu	37	20	62123799	62123802	+	Intron	DEL	ATGG	-	-			2011-2282:2012-1330-T	g.chr20:62123799_62123802delATGG	uc002yfd.1	-						EEF1A2_uc002yfe.1_Intron|EEF1A2_uc010gkg.1_Intron	NM_001958	NP_001949
BAGE2	85319	broad.mit.edu	37	21	11047597	11047598	+	Splice_Site	INS	-	A	A			2011-2282:2012-1330-T	g.chr21:11047597_11047598insA	uc002yit.1	-	5	660	c.452_splice	c.e5-1			NM_182482	NP_872288
DSCAM	1826	broad.mit.edu	37	21	41658774	41658775	+	Intron	INS	-	A	A	rs62223768;rs62223769		2011-2282:2012-1330-T	g.chr21:41658774_41658775insA	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
HSF2BP	11077	broad.mit.edu	37	21	45024335	45024336	+	Intron	DEL	CA	-	-			2011-2282:2012-1330-T	g.chr21:45024335_45024336delCA	uc002zdi.2	-						HSF2BP_uc011aey.1_Intron	NM_007031	NP_008962
COL18A1	80781	broad.mit.edu	37	21	46903847	46903848	+	Intron	DEL	CA	-	-	rs71982629		2011-2282:2012-1330-T	g.chr21:46903847_46903848delCA	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron	NM_130444	NP_569711
TP63	8626	broad.mit.edu	37	3	189348969	189348973	+	5'Flank	DEL	CTCCA	-	-	rs76937731		2011-2282:2012-1330-T	g.chr3:189348969_189348973delCTCCA	uc003fry.2	+						TP63_uc003frx.2_5'Flank|TP63_uc003frz.2_5'Flank|TP63_uc010hzc.1_5'Flank	NM_003722	NP_003713
AHRR	57491	broad.mit.edu	37	5	344878	344879	+	Intron	DEL	GT	-	-	rs145431682;rs12519368		2011-2282:2012-1330-T	g.chr5:344878_344879delGT	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
CEP72	55722	broad.mit.edu	37	5	649393	649394	+	Intron	INS	-	G	G			2011-2282:2012-1330-T	g.chr5:649393_649394insG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1071733	1071733	+	Intron	DEL	C	-	-			2011-2282:2012-1330-T	g.chr5:1071733delC	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072336	1072336	+	Intron	DEL	C	-	-	rs71281503		2011-2282:2012-1330-T	g.chr5:1072336delC	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1273411	1273412	+	Intron	INS	-	CA	CA			2011-2282:2012-1330-T	g.chr5:1273411_1273412insCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
SLC6A3	6531	broad.mit.edu	37	5	1422600	1422601	+	Intron	DEL	CA	-	-			2011-2282:2012-1330-T	g.chr5:1422600_1422601delCA	uc003jck.2	-							NM_001044	NP_001035
ADAMTS16	170690	broad.mit.edu	37	5	5305406	5305407	+	Intron	DEL	CA	-	-			2011-2282:2012-1330-T	g.chr5:5305406_5305407delCA	uc003jdl.2	+							NM_139056	NP_620687
GMDS	2762	broad.mit.edu	37	6	1927592	1927592	+	Intron	DEL	T	-	-	rs67316164		2011-2282:2012-1330-T	g.chr6:1927592delT	uc003mtq.2	-							NM_001500	NP_001491
WDR27	253769	broad.mit.edu	37	6	170054813	170054815	+	Intron	DEL	AGA	-	-			2011-2282:2012-1330-T	g.chr6:170054813_170054815delAGA	uc003qwx.2	-						WDR27_uc003qwv.1_Intron|WDR27_uc010kkw.1_Intron|WDR27_uc003qwy.2_Intron		
PSMB1	5689	broad.mit.edu	37	6	170783956	170783956	+	Intron	DEL	C	-	-	rs112303146		2011-2282:2012-1330-T	g.chr6:170783956delC	uc003qxq.2	-							NM_002793	
ADAP1	11033	broad.mit.edu	37	7	945360	945361	+	Intron	INS	-	A	A	rs147722082	by1000genomes	2011-2282:2012-1330-T	g.chr7:945360_945361insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945964	945965	+	Intron	INS	-	A	A			2011-2282:2012-1330-T	g.chr7:945964_945965insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982890	982891	+	Intron	DEL	GG	-	-			2011-2282:2012-1330-T	g.chr7:982890_982891delGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982936	982938	+	Intron	DEL	GAC	-	-	rs139903029	by1000genomes	2011-2282:2012-1330-T	g.chr7:982936_982938delGAC	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PRKAG2	51422	broad.mit.edu	37	7	151367092	151367093	+	Intron	INS	-	CA	CA			2011-2282:2012-1330-T	g.chr7:151367092_151367093insCA	uc003wkk.2	-						PRKAG2_uc011kvl.1_Intron|PRKAG2_uc003wkj.2_Intron|PRKAG2_uc010lqe.1_Intron	NM_016203	NP_057287
ZFAT	57623	broad.mit.edu	37	8	135602795	135602797	+	Intron	DEL	CAC	-	-	rs35087145		2011-2282:2012-1330-T	g.chr8:135602795_135602797delCAC	uc003yup.2	-						ZFAT_uc003yun.2_Intron|ZFAT_uc003yuo.2_Intron|ZFAT_uc010meh.2_Intron|ZFAT_uc010mei.2_Intron|ZFAT_uc003yuq.2_Intron|ZFAT_uc010mej.2_Intron	NM_020863	NP_065914
ZCCHC7	84186	broad.mit.edu	37	9	37172824	37172824	+	Intron	DEL	A	-	-			2011-2282:2012-1330-T	g.chr9:37172824delA	uc003zzq.2	+						ZCCHC7_uc011lqh.1_Intron|ZCCHC7_uc011lqi.1_Intron|ZCCHC7_uc010mlt.2_Intron|ZCCHC7_uc003zzs.1_Intron	NM_032226	NP_115602
GOLM1	51280	broad.mit.edu	37	9	88668484	88668485	+	Intron	DEL	AT	-	-	rs117098676		2011-2282:2012-1330-T	g.chr9:88668484_88668485delAT	uc004aol.2	-						GOLM1_uc010mqd.1_Intron|GOLM1_uc004aom.2_Intron	NM_016548	NP_057632
LAMC3	10319	broad.mit.edu	37	9	133907919	133907922	+	Intron	DEL	CTGT	-	-	rs71501238;rs71389384		2011-2282:2012-1330-T	g.chr9:133907919_133907922delCTGT	uc004caa.1	+							NM_006059	NP_006050
POMT1	10585	broad.mit.edu	37	9	134391370	134391371	+	Intron	INS	-	GG	GG			2011-2282:2012-1330-T	g.chr9:134391370_134391371insGG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391371	134391372	+	Intron	INS	-	GCACTTC	GCACTTC			2011-2282:2012-1330-T	g.chr9:134391371_134391372insGCACTTC	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391531	134391534	+	Intron	DEL	CTAA	-	-			2011-2282:2012-1330-T	g.chr9:134391531_134391534delCTAA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391538	134391539	+	Intron	INS	-	G	G			2011-2282:2012-1330-T	g.chr9:134391538_134391539insG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391541	134391542	+	Intron	INS	-	G	G	rs111862656		2011-2282:2012-1330-T	g.chr9:134391541_134391542insG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
OLFM1	10439	broad.mit.edu	37	9	138011296	138011297	+	Intron	INS	-	A	A			2011-2282:2012-1330-T	g.chr9:138011296_138011297insA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfn.3_Intron	NM_014279	NP_055094
MAN1B1	11253	broad.mit.edu	37	9	139998142	139998143	+	Intron	DEL	AT	-	-			2011-2282:2012-1330-T	g.chr9:139998142_139998143delAT	uc004cld.2	+						MAN1B1_uc011meo.1_Intron|MAN1B1_uc011mep.1_Intron|MAN1B1_uc010ncc.2_Intron|MAN1B1_uc004clf.1_5'UTR|MAN1B1_uc004clg.1_5'Flank	NM_016219	NP_057303
AGRN	375790	broad.mit.edu	37	1	966012	966013	+	Intron	DEL	GA	-	-			2011-2283:2012-316-T	g.chr1:966012_966013delGA	uc001ack.1	+							NM_198576	NP_940978
GUCA2A	2980	broad.mit.edu	37	1	42632473	42632474	+	5'Flank	INS	-	GT	GT	rs140638678	by1000genomes	2011-2283:2012-316-T	g.chr1:42632473_42632474insGT	uc001chd.1	-							NM_033553	NP_291031
LGR6	59352	broad.mit.edu	37	1	202173859	202173862	+	Intron	DEL	ACAC	-	-			2011-2283:2012-316-T	g.chr1:202173859_202173862delACAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174248	202174249	+	Intron	INS	-	AC	AC			2011-2283:2012-316-T	g.chr1:202174248_202174249insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174494	202174495	+	Intron	DEL	CC	-	-			2011-2283:2012-316-T	g.chr1:202174494_202174495delCC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174498	202174509	+	Intron	DEL	ACACACACACCT	-	-	rs150017503;rs141873830;rs138471820		2011-2283:2012-316-T	g.chr1:202174498_202174509delACACACACACCT	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
ADAM12	8038	broad.mit.edu	37	10	127847014	127847014	+	Intron	DEL	C	-	-	rs66634335		2011-2283:2012-316-T	g.chr10:127847014delC	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
ADAM12	8038	broad.mit.edu	37	10	127847109	127847110	+	Intron	INS	-	A	A	rs146194541	by1000genomes	2011-2283:2012-316-T	g.chr10:127847109_127847110insA	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
ADAM12	8038	broad.mit.edu	37	10	127847110	127847111	+	Intron	INS	-	A	A	rs146194541;rs66694327	by1000genomes	2011-2283:2012-316-T	g.chr10:127847110_127847111insA	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
KNDC1	85442	broad.mit.edu	37	10	135037318	135037319	+	Intron	INS	-	GT	GT			2011-2283:2012-316-T	g.chr10:135037318_135037319insGT	uc001llz.1	+							NM_152643	NP_689856
BRSK2	9024	broad.mit.edu	37	11	1461123	1461124	+	Intron	INS	-	T	T			2011-2283:2012-316-T	g.chr11:1461123_1461124insT	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron|BRSK2_uc001ltm.2_Intron|BRSK2_uc001ltn.2_Intron|BRSK2_uc010qwx.1_5'Flank	NM_003957	NP_003948
TPCN2	219931	broad.mit.edu	37	11	68832398	68832399	+	Intron	DEL	TG	-	-	rs36072808;rs71949772		2011-2283:2012-316-T	g.chr11:68832398_68832399delTG	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
PIWIL1	9271	broad.mit.edu	37	12	130837974	130837974	+	Intron	DEL	T	-	-			2011-2283:2012-316-T	g.chr12:130837974delT	uc001uik.2	+						PIWIL1_uc001uij.1_Intron	NM_004764	NP_004755
RIMBP2	23504	broad.mit.edu	37	12	131068783	131068788	+	Intron	DEL	CACCAT	-	-	rs139932122;rs146226486		2011-2283:2012-316-T	g.chr12:131068783_131068788delCACCAT	uc001uim.2	-								
DPEP1	1800	broad.mit.edu	37	16	89701321	89701321	+	Intron	DEL	C	-	-			2011-2283:2012-316-T	g.chr16:89701321delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
RPH3AL	9501	broad.mit.edu	37	17	165110	165110	+	Intron	DEL	C	-	-			2011-2283:2012-316-T	g.chr17:165110delC	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	1021075	1021075	+	Intron	DEL	C	-	-	rs112836876		2011-2283:2012-316-T	g.chr17:1021075delC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
LYPD5	284348	broad.mit.edu	37	19	44302254	44302254	+	Intron	DEL	C	-	-	rs112453679		2011-2283:2012-316-T	g.chr19:44302254delC	uc002oxm.3	-						LYPD5_uc002oxn.3_Intron	NM_001031749	NP_001026919
RAB3GAP1	22930	broad.mit.edu	37	2	135875114	135875116	+	Intron	DEL	CTT	-	-	rs5834435;rs148531320		2011-2283:2012-316-T	g.chr2:135875114_135875116delCTT	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
TRPC4AP	26133	broad.mit.edu	37	20	33647715	33647717	+	Intron	DEL	GAA	-	-	rs72187724		2011-2283:2012-316-T	g.chr20:33647715_33647717delGAA	uc002xbk.2	-						TRPC4AP_uc002xbl.2_Intron|TRPC4AP_uc010zur.1_Intron|TRPC4AP_uc002xbm.1_Intron	NM_015638	NP_056453
RUNX1	861	broad.mit.edu	37	21	36260999	36261000	+	5'Flank	INS	-	T	T			2011-2283:2012-316-T	g.chr21:36260999_36261000insT	uc002yuh.2	-						RUNX1_uc002yut.1_Intron|RUNX1_uc002yui.2_5'Flank|RUNX1_uc010gmu.2_Intron|RUNX1_uc010gmv.2_Intron|RUNX1_uc002yuj.3_Intron|RUNX1_uc002yuk.3_Intron|RUNX1_uc002yum.1_Intron|RUNX1_uc010gmw.1_Intron|RUNX1_uc002yuo.1_5'Flank	NM_001001890	NP_001001890
PHF21B	112885	broad.mit.edu	37	22	45280551	45280552	+	Intron	INS	-	CAC	CAC	rs145192559;rs140838666	by1000genomes	2011-2283:2012-316-T	g.chr22:45280551_45280552insCAC	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
GAK	2580	broad.mit.edu	37	4	908065	908066	+	Intron	DEL	CA	-	-			2011-2283:2012-316-T	g.chr4:908065_908066delCA	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_Intron|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246
KIT	3815	broad.mit.edu	37	4	55573491	55573491	+	Intron	DEL	C	-	-			2011-2283:2012-316-T	g.chr4:55573491delC	uc010igr.2	+						KIT_uc010igs.2_Intron	NM_000222	NP_000213
FAT1	2195	broad.mit.edu	37	4	187557948	187557949	+	Frame_Shift_Ins	INS	-	GAGT	GAGT			2011-2283:2012-316-T	g.chr4:187557948_187557949insGAGT	uc003izf.2	-	5	3950_3951	c.3762_3763insACTC	c.(3760-3765)CTCCCTfs	p.L1254fs		NM_005245	NP_005236
IL6ST	3572	broad.mit.edu	37	5	55278829	55278829	+	Intron	DEL	T	-	-	rs111793262		2011-2283:2012-316-T	g.chr5:55278829delT	uc003jqq.2	-						IL6ST_uc011cqk.1_5'Flank|IL6ST_uc003jqr.2_Intron	NM_002184	NP_002175
RNASET2	8635	broad.mit.edu	37	6	167368882	167368883	+	Intron	DEL	CG	-	-			2011-2283:2012-316-T	g.chr6:167368882_167368883delCG	uc003qve.2	-						RNASET2_uc003qvh.2_Intron|RNASET2_uc003qvf.2_Intron|RNASET2_uc003qvg.2_Intron|RNASET2_uc003qvi.1_Intron	NM_003730	NP_003721
ADAP1	11033	broad.mit.edu	37	7	945360	945361	+	Intron	INS	-	A	A	rs147722082	by1000genomes	2011-2283:2012-316-T	g.chr7:945360_945361insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945964	945965	+	Intron	INS	-	A	A			2011-2283:2012-316-T	g.chr7:945964_945965insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PLXNA4	91584	broad.mit.edu	37	7	132249133	132249135	+	Intron	DEL	CTC	-	-	rs112244070		2011-2283:2012-316-T	g.chr7:132249133_132249135delCTC	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
ERICH1	157697	broad.mit.edu	37	8	625596	625596	+	Intron	DEL	G	-	-			2011-2283:2012-316-T	g.chr8:625596delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
FANCC	2176	broad.mit.edu	37	9	97997493	97997502	+	Intron	DEL	GCACCCAAAG	-	-	rs11278702;rs34429527		2011-2283:2012-316-T	g.chr9:97997493_97997502delGCACCCAAAG	uc004avh.2	-						FANCC_uc004avi.3_Intron|FANCC_uc010mrm.1_Intron|FANCC_uc011lul.1_Intron	NM_000136	NP_000127
FAM125B	89853	broad.mit.edu	37	9	129246803	129246805	+	Intron	DEL	CTT	-	-	rs35528692;rs35371157		2011-2283:2012-316-T	g.chr9:129246803_129246805delCTT	uc004bqh.1	+						FAM125B_uc011lzy.1_Intron|FAM125B_uc010mxd.2_Intron	NM_033446	NP_258257
TTF1	7270	broad.mit.edu	37	9	135253604	135253605	+	Intron	INS	-	GT	GT	rs146418873	by1000genomes	2011-2283:2012-316-T	g.chr9:135253604_135253605insGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
DHRSX	207063	broad.mit.edu	37	X	2300710	2300711	+	Intron	INS	-	CAC	CAC			2011-2283:2012-316-T	g.chrX:2300710_2300711insCAC	uc004cqf.3	-							NM_145177	NP_660160
OPHN1	4983	broad.mit.edu	37	X	67459062	67459062	+	Intron	DEL	G	-	-	rs67901004		2011-2283:2012-316-T	g.chrX:67459062delG	uc004dww.3	-						OPHN1_uc011mpg.1_Intron|OPHN1_uc004dwx.2_Intron	NM_002547	NP_002538
JAK1	3716	broad.mit.edu	37	1	65432744	65432744	+	5'Flank	DEL	A	-	-			2011-2284:2012-315-T	g.chr1:65432744delA	uc001dbu.1	-						JAK1_uc009wam.1_5'Flank	NM_002227	NP_002218
ODF3	113746	broad.mit.edu	37	11	194812	194812	+	5'Flank	DEL	C	-	-	rs113267557		2011-2284:2012-315-T	g.chr11:194812delC	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
SLC22A12	116085	broad.mit.edu	37	11	64363561	64363562	+	Intron	INS	-	ATGG	ATGG	rs146602952		2011-2284:2012-315-T	g.chr11:64363561_64363562insATGG	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
ST8SIA1	6489	broad.mit.edu	37	12	22473945	22473946	+	Intron	DEL	AA	-	-			2011-2284:2012-315-T	g.chr12:22473945_22473946delAA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
ZNF554	115196	broad.mit.edu	37	19	2818004	2818005	+	5'Flank	INS	-	C	C			2011-2284:2012-315-T	g.chr19:2818004_2818005insC	uc002lwm.2	+						ZNF554_uc002lwl.2_5'Flank	NM_001102651	NP_001096121
ARHGEF1	9138	broad.mit.edu	37	19	42424637	42424640	+	Intron	DEL	ACAC	-	-			2011-2284:2012-315-T	g.chr19:42424637_42424640delACAC	uc002osc.2	+								
KIR3DL1	3811	broad.mit.edu	37	19	55328084	55328084	+	Intron	DEL	A	-	-	rs142454309		2011-2284:2012-315-T	g.chr19:55328084delA	uc002qhk.3	+						KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Intron|KIR3DL1_uc010esf.2_Intron|KIR3DL1_uc010yfo.1_Intron|KIR3DL1_uc002qhl.3_Intron	NM_013289	NP_037421
NLRP4	147945	broad.mit.edu	37	19	56365121	56365122	+	Intron	INS	-	TC	TC	rs113515986		2011-2284:2012-315-T	g.chr19:56365121_56365122insTC	uc002qmd.3	+							NM_134444	NP_604393
TSSC1	7260	broad.mit.edu	37	2	3323746	3323747	+	Intron	INS	-	C	C	rs11428708;rs33952178		2011-2284:2012-315-T	g.chr2:3323746_3323747insC	uc002qxj.2	-						TSSC1_uc002qxi.2_5'Flank	NM_003310	NP_003301
CHEK2	11200	broad.mit.edu	37	22	29133463	29133464	+	Intron	DEL	TT	-	-			2011-2284:2012-315-T	g.chr22:29133463_29133464delTT	uc003adu.1	-						CHEK2_uc003ads.1_5'Flank|CHEK2_uc010gvh.1_5'Flank|CHEK2_uc010gvi.1_5'Flank|CHEK2_uc010gvj.1_5'Flank|CHEK2_uc003adr.1_5'Flank|CHEK2_uc010gvk.1_5'Flank|CHEK2_uc003adt.1_Intron|CHEK2_uc003adv.1_Intron|CHEK2_uc003adw.1_Intron|CHEK2_uc003adx.1_Intron|CHEK2_uc003ady.1_Intron|CHEK2_uc003adz.1_Intron	NM_007194	NP_009125
ST3GAL3	6487	broad.mit.edu	37	1	44283358	44283360	+	Intron	DEL	CTT	-	-			2011-2285:2012-326-T	g.chr1:44283358_44283360delCTT	uc001ckc.2	+						ST3GAL3_uc009vwu.1_Intron|ST3GAL3_uc010okj.1_Intron|ST3GAL3_uc001cjz.2_Intron|ST3GAL3_uc001cka.2_Intron|ST3GAL3_uc001ckb.2_Intron|ST3GAL3_uc001ckd.2_Intron|ST3GAL3_uc001cke.2_Intron|ST3GAL3_uc001ckf.2_Intron|ST3GAL3_uc001ckg.2_Intron|ST3GAL3_uc001ckh.2_Intron|ST3GAL3_uc001cki.2_Intron|ST3GAL3_uc009vwv.2_Intron|ST3GAL3_uc001ckj.2_Intron|ST3GAL3_uc009vww.2_Intron|ST3GAL3_uc001ckk.2_Intron|ST3GAL3_uc009vwy.2_Intron|ST3GAL3_uc009vwx.2_Intron|ST3GAL3_uc001ckm.2_Intron|ST3GAL3_uc001ckl.2_Intron|ST3GAL3_uc009vwz.2_Intron|ST3GAL3_uc001ckn.2_Intron|ST3GAL3_uc001ckp.2_Intron|ST3GAL3_uc001cko.2_Intron|ST3GAL3_uc009vxa.2_Intron|ST3GAL3_uc001ckq.2_Intron|ST3GAL3_uc001ckr.2_Intron|ST3GAL3_uc009vxb.2_Intron	NM_006279	NP_006270
LGR6	59352	broad.mit.edu	37	1	202174137	202174138	+	Intron	INS	-	AC	AC			2011-2285:2012-326-T	g.chr1:202174137_202174138insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
KSR2	283455	broad.mit.edu	37	12	118210036	118210037	+	Intron	INS	-	AA	AA			2011-2285:2012-326-T	g.chr12:118210036_118210037insAA	uc001two.2	-							NM_173598	NP_775869
GAS6	2621	broad.mit.edu	37	13	114544862	114544863	+	Intron	DEL	CA	-	-			2011-2285:2012-326-T	g.chr13:114544862_114544863delCA	uc001vud.2	-						uc010tki.1_5'Flank	NM_000820	NP_000811
ADAMTS17	170691	broad.mit.edu	37	15	100598546	100598547	+	Intron	INS	-	T	T			2011-2285:2012-326-T	g.chr15:100598546_100598547insT	uc002bvv.1	-							NM_139057	NP_620688
ARHGAP17	55114	broad.mit.edu	37	16	25029262	25029262	+	5'Flank	DEL	T	-	-	rs79150258		2011-2285:2012-326-T	g.chr16:25029262delT	uc002dnb.2	-						ARHGAP17_uc002dnc.2_5'Flank|ARHGAP17_uc010vcf.1_5'Flank|ARHGAP17_uc002dng.1_5'Flank	NM_001006634	NP_001006635
NLRC5	84166	broad.mit.edu	37	16	57105571	57105572	+	Intron	INS	-	AGTA	AGTA	rs144570575	by1000genomes	2011-2285:2012-326-T	g.chr16:57105571_57105572insAGTA	uc002ekk.1	+						NLRC5_uc010ccr.1_Intron|NLRC5_uc010ccs.1_Intron|NLRC5_uc002eko.1_Intron|NLRC5_uc002ekq.1_Intron|NLRC5_uc002ekr.1_Intron	NM_032206	NP_115582
NXN	64359	broad.mit.edu	37	17	852116	852117	+	Intron	INS	-	C	C			2011-2285:2012-326-T	g.chr17:852116_852117insC	uc002fsa.2	-							NM_022463	NP_071908
KRT10	3858	broad.mit.edu	37	17	38978419	38978419	+	Frame_Shift_Del	DEL	C	-	-			2011-2285:2012-326-T	g.chr17:38978419delC	uc002hvi.2	-	1	445	c.419delG	c.(418-420)GGCfs	p.G140fs	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412
JUP	3728	broad.mit.edu	37	17	39755251	39755253	+	Intron	DEL	TGG	-	-			2011-2285:2012-326-T	g.chr17:39755251_39755253delTGG	uc010wfs.1	-							NM_021991	NP_068831
SLC16A3	9123	broad.mit.edu	37	17	80185559	80185561	+	5'Flank	DEL	AGC	-	-	rs34021482		2011-2285:2012-326-T	g.chr17:80185559_80185561delAGC	uc002kea.2	+						SLC16A3_uc002keb.2_5'Flank	NM_001042422	NP_001035887
NFATC1	4772	broad.mit.edu	37	18	77187574	77187574	+	Intron	DEL	G	-	-			2011-2285:2012-326-T	g.chr18:77187574delG	uc010xfg.1	+						NFATC1_uc002lnc.1_Intron|NFATC1_uc010xff.1_Intron|NFATC1_uc002lnd.2_Intron|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfi.1_Intron|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Intron|NFATC1_uc002lng.2_Intron|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153
INSR	3643	broad.mit.edu	37	19	7153369	7153369	+	Intron	DEL	C	-	-			2011-2285:2012-326-T	g.chr19:7153369delC	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
TSSC1	7260	broad.mit.edu	37	2	3298684	3298685	+	Intron	INS	-	CA	CA	rs149607117;rs34509649	by1000genomes	2011-2285:2012-326-T	g.chr2:3298684_3298685insCA	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
C20orf26	26074	broad.mit.edu	37	20	20336759	20336760	+	Intron	INS	-	TG	TG			2011-2285:2012-326-T	g.chr20:20336759_20336760insTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
DSCAM	1826	broad.mit.edu	37	21	42058276	42058277	+	Intron	DEL	CA	-	-			2011-2285:2012-326-T	g.chr21:42058276_42058277delCA	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
SORCS2	57537	broad.mit.edu	37	4	7726402	7726404	+	Intron	DEL	GTA	-	-			2011-2285:2012-326-T	g.chr4:7726402_7726404delGTA	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
ELMO1	9844	broad.mit.edu	37	7	37487241	37487241	+	Intron	DEL	A	-	-	rs148859083	by1000genomes	2011-2285:2012-326-T	g.chr7:37487241delA	uc003tfk.1	-						ELMO1_uc010kxg.1_Intron	NM_014800	NP_055615
PTPRN2	5799	broad.mit.edu	37	7	157569221	157569222	+	Intron	INS	-	C	C			2011-2285:2012-326-T	g.chr7:157569221_157569222insC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157569223	157569224	+	Intron	INS	-	CC	CC			2011-2285:2012-326-T	g.chr7:157569223_157569224insCC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TTF1	7270	broad.mit.edu	37	9	135252932	135252933	+	Intron	DEL	GT	-	-			2011-2285:2012-326-T	g.chr9:135252932_135252933delGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
CSF2RA	1438	broad.mit.edu	37	X	1386086	1386087	+	5'Flank	DEL	GT	-	-			2011-2285:2012-326-T	g.chrX:1386086_1386087delGT	uc010nct.2	+						CSF2RA_uc011mhb.1_5'Flank|CSF2RA_uc004cpq.2_5'Flank|CSF2RA_uc004cpn.2_5'Flank|CSF2RA_uc004cpo.2_5'Flank|CSF2RA_uc010ncu.2_5'Flank|CSF2RA_uc011mhc.1_5'Flank|CSF2RA_uc004cpp.2_5'Flank	NM_001161529	NP_001155001
MORN1	79906	broad.mit.edu	37	1	2263371	2263372	+	Intron	INS	-	G	G			2011-2286:2012-1321-T	g.chr1:2263371_2263372insG	uc001ajb.1	-							NM_024848	NP_079124
MORN1	79906	broad.mit.edu	37	1	2263374	2263375	+	Intron	INS	-	C	C			2011-2286:2012-1321-T	g.chr1:2263374_2263375insC	uc001ajb.1	-							NM_024848	NP_079124
P2RY2	5029	broad.mit.edu	37	11	72938392	72938393	+	Intron	DEL	TG	-	-			2011-2286:2012-1321-T	g.chr11:72938392_72938393delTG	uc001otj.2	+						P2RY2_uc001otk.2_Intron|P2RY2_uc001otl.2_Intron	NM_002564	NP_002555
GRK1	6011	broad.mit.edu	37	13	114436864	114436865	+	Intron	DEL	GT	-	-			2011-2286:2012-1321-T	g.chr13:114436864_114436865delGT	uc010tkf.1	+							NM_002929	NP_002920
LMF1	64788	broad.mit.edu	37	16	908637	908637	+	Intron	DEL	C	-	-			2011-2286:2012-1321-T	g.chr16:908637delC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
TPSD1	23430	broad.mit.edu	37	16	1305069	1305069	+	5'Flank	DEL	G	-	-			2011-2286:2012-1321-T	g.chr16:1305069delG	uc002clb.1	+						TPSD1_uc010brm.1_5'Flank	NM_012217	NP_036349
TIMM22	29928	broad.mit.edu	37	17	897468	897468	+	5'Flank	DEL	C	-	-			2011-2286:2012-1321-T	g.chr17:897468delC	uc002fsc.2	+							NM_013337	NP_037469
TIMM22	29928	broad.mit.edu	37	17	897498	897498	+	5'Flank	DEL	C	-	-			2011-2286:2012-1321-T	g.chr17:897498delC	uc002fsc.2	+							NM_013337	NP_037469
ABR	29	broad.mit.edu	37	17	1021191	1021192	+	Intron	INS	-	C	C			2011-2286:2012-1321-T	g.chr17:1021191_1021192insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
RPTOR	57521	broad.mit.edu	37	17	78904248	78904248	+	Intron	DEL	T	-	-	rs66536164		2011-2286:2012-1321-T	g.chr17:78904248delT	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
C19orf50	79036	broad.mit.edu	37	19	18670711	18670712	+	Intron	DEL	TC	-	-			2011-2286:2012-1321-T	g.chr19:18670711_18670712delTC	uc002njo.2	+						C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_5'Flank	NM_024069	NP_076974
RMND5A	64795	broad.mit.edu	37	2	87623883	87623883	+	Intron	DEL	A	-	-			2011-2286:2012-1321-T	g.chr2:87623883delA	uc002srs.3	+								
RANBP1	5902	broad.mit.edu	37	22	20110474	20110475	+	Intron	DEL	GT	-	-			2011-2286:2012-1321-T	g.chr22:20110474_20110475delGT	uc002zro.1	+						RANBP1_uc011ahl.1_Intron|RANBP1_uc002zrp.2_Intron	NM_002882	NP_002873
SENP5	205564	broad.mit.edu	37	3	196625703	196625703	+	Intron	DEL	A	-	-			2011-2286:2012-1321-T	g.chr3:196625703delA	uc003fwz.3	+						SENP5_uc011bty.1_Intron	NM_152699	NP_689912
AHRR	57491	broad.mit.edu	37	5	345528	345529	+	Intron	DEL	TG	-	-			2011-2286:2012-1321-T	g.chr5:345528_345529delTG	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
CEP72	55722	broad.mit.edu	37	5	650334	650335	+	Intron	DEL	TG	-	-			2011-2286:2012-1321-T	g.chr5:650334_650335delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651175	651175	+	Intron	DEL	G	-	-			2011-2286:2012-1321-T	g.chr5:651175delG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1072559	1072560	+	Intron	INS	-	A	A			2011-2286:2012-1321-T	g.chr5:1072559_1072560insA	uc003jbu.2	-							NM_006598	NP_006589
THBS2	7058	broad.mit.edu	37	6	169642909	169642909	+	Intron	DEL	C	-	-			2011-2286:2012-1321-T	g.chr6:169642909delC	uc003qwt.2	-							NM_003247	NP_003238
AUTS2	26053	broad.mit.edu	37	7	69960660	69960660	+	Intron	DEL	A	-	-			2011-2286:2012-1321-T	g.chr7:69960660delA	uc003tvw.3	+						AUTS2_uc003tvx.3_Intron	NM_015570	NP_056385
ZNF804B	219578	broad.mit.edu	37	7	88388312	88388312	+	5'Flank	DEL	T	-	-			2011-2286:2012-1321-T	g.chr7:88388312delT	uc011khi.1	+							NM_181646	NP_857597
PTPRN2	5799	broad.mit.edu	37	7	157981026	157981027	+	Intron	INS	-	T	T	rs11376534;rs33977963		2011-2286:2012-1321-T	g.chr7:157981026_157981027insT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
HEATR7A	727957	broad.mit.edu	37	8	145288395	145288395	+	Intron	DEL	C	-	-			2011-2286:2012-1321-T	g.chr8:145288395delC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
TRAF2	7186	broad.mit.edu	37	9	139817336	139817337	+	Intron	DEL	GA	-	-			2011-2286:2012-1321-T	g.chr9:139817336_139817337delGA	uc010nbu.2	+						TRAF2_uc004cjv.2_Intron|TRAF2_uc011mek.1_Intron|TRAF2_uc010nbw.2_Intron	NM_021138	NP_066961
EHMT1	79813	broad.mit.edu	37	9	140610825	140610826	+	Intron	INS	-	G	G			2011-2286:2012-1321-T	g.chr9:140610825_140610826insG	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
DHRSX	207063	broad.mit.edu	37	X	2300710	2300711	+	Intron	INS	-	CAC	CAC			2011-2286:2012-1321-T	g.chrX:2300710_2300711insCAC	uc004cqf.3	-							NM_145177	NP_660160
DHRS3	9249	broad.mit.edu	37	1	12645080	12645081	+	Intron	DEL	TG	-	-			2011-2288:2012-1331-T	g.chr1:12645080_12645081delTG	uc001auc.2	-						DHRS3_uc001aub.2_Intron|DHRS3_uc009vnm.2_Intron|DHRS3_uc001aud.3_Intron|DHRS3_uc001aue.1_Intron	NM_004753	NP_004744
HHAT	55733	broad.mit.edu	37	1	210639505	210639506	+	Intron	INS	-	GAAT	GAAT			2011-2288:2012-1331-T	g.chr1:210639505_210639506insGAAT	uc009xcx.2	+						HHAT_uc010psq.1_Intron|HHAT_uc001hhz.3_Intron|HHAT_uc010psr.1_Intron|HHAT_uc010pss.1_Intron|HHAT_uc009xcy.2_Intron|HHAT_uc010pst.1_Intron|HHAT_uc010psu.1_Intron|HHAT_uc001hia.3_Intron	NM_001122834	NP_001116306
TIMM22	29928	broad.mit.edu	37	17	897516	897519	+	5'Flank	DEL	ACAT	-	-	rs144033044;rs77497403		2011-2288:2012-1331-T	g.chr17:897516_897519delACAT	uc002fsc.2	+							NM_013337	NP_037469
TIMM22	29928	broad.mit.edu	37	17	897531	897532	+	5'Flank	INS	-	C	C			2011-2288:2012-1331-T	g.chr17:897531_897532insC	uc002fsc.2	+							NM_013337	NP_037469
TP53	7157	broad.mit.edu	37	17	7578507	7578518	+	In_Frame_Del	DEL	GCAGGTCTTGGC	-	-	rs137852794;rs28934875		2011-2288:2012-1331-T	g.chr17:7578507_7578518delGCAGGTCTTGGC	uc002gim.2	-	5	606_617	c.412_423delGCCAAGACCTGC	c.(412-423)GCCAAGACCTGCdel	p.AKTC138del	TP53_uc002gig.1_In_Frame_Del_p.AKTC138del|TP53_uc002gih.2_In_Frame_Del_p.AKTC138del|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_In_Frame_Del_p.AKTC6del|TP53_uc010cng.1_In_Frame_Del_p.AKTC6del|TP53_uc002gii.1_In_Frame_Del_p.AKTC6del|TP53_uc010cnh.1_In_Frame_Del_p.AKTC138del|TP53_uc010cni.1_In_Frame_Del_p.AKTC138del|TP53_uc002gij.2_In_Frame_Del_p.AKTC138del|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_In_Frame_Del_p.AKTC45del|TP53_uc002gio.2_In_Frame_Del_p.AKTC6del|TP53_uc010vug.1_In_Frame_Del_p.AKTC99del	NM_001126112	NP_001119584
SNTG2	54221	broad.mit.edu	37	2	1285200	1285202	+	Intron	DEL	GTG	-	-			2011-2288:2012-1331-T	g.chr2:1285200_1285202delGTG	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
HDAC4	9759	broad.mit.edu	37	2	240268457	240268458	+	Intron	INS	-	A	A			2011-2288:2012-1331-T	g.chr2:240268457_240268458insA	uc002vyk.3	-						HDAC4_uc010fza.2_Intron	NM_006037	NP_006028
HDAC4	9759	broad.mit.edu	37	2	240268476	240268477	+	Intron	DEL	AT	-	-			2011-2288:2012-1331-T	g.chr2:240268476_240268477delAT	uc002vyk.3	-						HDAC4_uc010fza.2_Intron	NM_006037	NP_006028
BMP7	655	broad.mit.edu	37	20	55794237	55794240	+	Intron	DEL	TGTT	-	-			2011-2288:2012-1331-T	g.chr20:55794237_55794240delTGTT	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
FGFR4	2264	broad.mit.edu	37	5	176523877	176523879	+	Intron	DEL	TCC	-	-			2011-2288:2012-1331-T	g.chr5:176523877_176523879delTCC	uc003mfl.2	+						FGFR4_uc003mfm.2_Intron|FGFR4_uc011dfu.1_Intron|FGFR4_uc003mfo.2_Intron	NM_002011	NP_002002
ADAP1	11033	broad.mit.edu	37	7	945930	945931	+	Intron	INS	-	A	A			2011-2288:2012-1331-T	g.chr7:945930_945931insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ARHGEF10	9639	broad.mit.edu	37	8	1781190	1781193	+	Intron	DEL	AGAC	-	-			2011-2288:2012-1331-T	g.chr8:1781190_1781193delAGAC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
ARHGEF10	9639	broad.mit.edu	37	8	1781198	1781199	+	Intron	DEL	AG	-	-			2011-2288:2012-1331-T	g.chr8:1781198_1781199delAG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
TOP1MT	116447	broad.mit.edu	37	8	144404915	144404915	+	Intron	DEL	A	-	-			2011-2288:2012-1331-T	g.chr8:144404915delA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
ZC3H3	23144	broad.mit.edu	37	8	144575053	144575054	+	Intron	INS	-	C	C			2011-2288:2012-1331-T	g.chr8:144575053_144575054insC	uc003yyd.2	-							NM_015117	NP_055932
LGR6	59352	broad.mit.edu	37	1	202174656	202174657	+	Intron	DEL	CA	-	-			2011-2289:2012-1332-T	g.chr1:202174656_202174657delCA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
GTPBP4	23560	broad.mit.edu	37	10	1061583	1061584	+	Intron	DEL	GC	-	-			2011-2289:2012-1332-T	g.chr10:1061583_1061584delGC	uc001ift.2	+						GTPBP4_uc001ifu.2_Intron|GTPBP4_uc010qad.1_Intron|GTPBP4_uc010qae.1_Intron	NM_012341	NP_036473
KNDC1	85442	broad.mit.edu	37	10	135037144	135037145	+	Intron	DEL	TC	-	-			2011-2289:2012-1332-T	g.chr10:135037144_135037145delTC	uc001llz.1	+							NM_152643	NP_689856
KNDC1	85442	broad.mit.edu	37	10	135037439	135037440	+	Intron	DEL	GT	-	-			2011-2289:2012-1332-T	g.chr10:135037439_135037440delGT	uc001llz.1	+							NM_152643	NP_689856
KSR2	283455	broad.mit.edu	37	12	118232179	118232180	+	Intron	DEL	CT	-	-	rs145084103		2011-2289:2012-1332-T	g.chr12:118232179_118232180delCT	uc001two.2	-							NM_173598	NP_775869
CCDC135	84229	broad.mit.edu	37	16	57739718	57739725	+	Intron	DEL	TTCTCCTC	-	-	rs138801901	by1000genomes	2011-2289:2012-1332-T	g.chr16:57739718_57739725delTTCTCCTC	uc002emi.2	+						CCDC135_uc002emj.2_Intron|CCDC135_uc002emk.2_Intron	NM_032269	NP_115645
BRCA1	672	broad.mit.edu	37	17	41219854	41219854	+	Intron	DEL	T	-	-			2011-2289:2012-1332-T	g.chr17:41219854delT	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron	NM_007294	NP_009225
SBNO2	22904	broad.mit.edu	37	19	1166044	1166045	+	Intron	INS	-	C	C	rs114658484		2011-2289:2012-1332-T	g.chr19:1166044_1166045insC	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
KIF1A	547	broad.mit.edu	37	2	241720868	241720869	+	Intron	INS	-	GCTC	GCTC	rs138545527	by1000genomes	2011-2289:2012-1332-T	g.chr2:241720868_241720869insGCTC	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
ZBTB46	140685	broad.mit.edu	37	20	62439418	62439419	+	5'Flank	DEL	GG	-	-	rs10577517		2011-2289:2012-1332-T	g.chr20:62439418_62439419delGG	uc002ygv.1	-						ZBTB46_uc002ygu.2_Intron|uc002ygw.2_5'Flank	NM_025224	NP_079500
SLC12A7	10723	broad.mit.edu	37	5	1082756	1082756	+	Intron	DEL	C	-	-			2011-2289:2012-1332-T	g.chr5:1082756delC	uc003jbu.2	-							NM_006598	NP_006589
UNC5A	90249	broad.mit.edu	37	5	176257398	176257399	+	Intron	DEL	GT	-	-			2011-2289:2012-1332-T	g.chr5:176257398_176257399delGT	uc003mey.2	+						UNC5A_uc003mex.1_Intron	NM_133369	NP_588610
WBSCR17	64409	broad.mit.edu	37	7	71036056	71036057	+	Intron	INS	-	C	C			2011-2289:2012-1332-T	g.chr7:71036056_71036057insC	uc003tvy.2	+						WBSCR17_uc003tvz.2_Intron	NM_022479	NP_071924
MAGI2	9863	broad.mit.edu	37	7	78031652	78031653	+	Intron	DEL	TG	-	-			2011-2289:2012-1332-T	g.chr7:78031652_78031653delTG	uc003ugx.2	-						MAGI2_uc003ugy.2_Intron|MAGI2_uc010ldx.1_Intron|MAGI2_uc010ldy.1_Intron|MAGI2_uc011kgr.1_Intron|MAGI2_uc011kgs.1_Intron	NM_012301	NP_036433
PTPRN2	5799	broad.mit.edu	37	7	157524734	157524735	+	Intron	INS	-	C	C	rs66827470		2011-2289:2012-1332-T	g.chr7:157524734_157524735insC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
CAMTA1	23261	broad.mit.edu	37	1	7715209	7715210	+	Intron	INS	-	AC	AC			2011-2290:2012-1322-T	g.chr1:7715209_7715210insAC	uc001aoi.2	+							NM_015215	NP_056030
CAMTA1	23261	broad.mit.edu	37	1	7715244	7715247	+	Intron	DEL	ACAA	-	-			2011-2290:2012-1322-T	g.chr1:7715244_7715247delACAA	uc001aoi.2	+							NM_015215	NP_056030
LGR6	59352	broad.mit.edu	37	1	202173341	202173342	+	Intron	INS	-	CA	CA	rs111964081;rs72231492		2011-2290:2012-1322-T	g.chr1:202173341_202173342insCA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
USH2A	7399	broad.mit.edu	37	1	215814143	215814143	+	Intron	DEL	A	-	-			2011-2290:2012-1322-T	g.chr1:215814143delA	uc001hku.1	-							NM_206933	NP_996816
ODF3	113746	broad.mit.edu	37	11	194812	194812	+	5'Flank	DEL	C	-	-	rs113267557		2011-2290:2012-1322-T	g.chr11:194812delC	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
C11orf16	56673	broad.mit.edu	37	11	8947732	8947732	+	Intron	DEL	C	-	-	rs147920860		2011-2290:2012-1322-T	g.chr11:8947732delC	uc001mhb.3	-						C11orf16_uc001mhc.3_Intron	NM_020643	NP_065694
DCLK1	9201	broad.mit.edu	37	13	36532435	36532443	+	Intron	DEL	TATAATAAA	-	-			2011-2290:2012-1322-T	g.chr13:36532435_36532443delTATAATAAA	uc001uvf.2	-							NM_004734	NP_004725
NTRK3	4916	broad.mit.edu	37	15	88670279	88670279	+	Intron	DEL	T	-	-			2011-2290:2012-1322-T	g.chr15:88670279delT	uc002bme.1	-						NTRK3_uc002bmh.2_Intron|NTRK3_uc002bmf.1_Intron|NTRK3_uc010upl.1_Intron|NTRK3_uc010bnh.1_Intron|NTRK3_uc002bmg.2_Intron	NM_001012338	NP_001012338
KLHDC4	54758	broad.mit.edu	37	16	87772470	87772471	+	Intron	INS	-	CATC	CATC	rs71667828		2011-2290:2012-1322-T	g.chr16:87772470_87772471insCATC	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
KCNG2	26251	broad.mit.edu	37	18	77625473	77625474	+	Intron	INS	-	G	G			2011-2290:2012-1322-T	g.chr18:77625473_77625474insG	uc010xfl.1	+							NM_012283	NP_036415
PALM	5064	broad.mit.edu	37	19	735409	735409	+	Intron	DEL	T	-	-			2011-2290:2012-1322-T	g.chr19:735409delT	uc002lpm.1	+						PALM_uc002lpn.1_Intron|PALM_uc010xfu.1_Intron	NM_002579	NP_002570
CPSF3	51692	broad.mit.edu	37	2	9606326	9606327	+	Intron	DEL	CA	-	-			2011-2290:2012-1322-T	g.chr2:9606326_9606327delCA	uc002qzo.1	+						CPSF3_uc002qzp.1_Intron|CPSF3_uc002qzq.1_Intron	NM_016207	NP_057291
RMND5A	64795	broad.mit.edu	37	2	87633950	87633950	+	Intron	DEL	C	-	-			2011-2290:2012-1322-T	g.chr2:87633950delC	uc002srs.3	+								
MAP2	4133	broad.mit.edu	37	2	210288885	210288885	+	5'UTR	DEL	C	-	-	rs113563544		2011-2290:2012-1322-T	g.chr2:210288885delC	uc002vdc.1	+	1					MAP2_uc002vdd.1_5'UTR	NM_002374	NP_002365
CACNA2D3	55799	broad.mit.edu	37	3	54751700	54751701	+	Intron	DEL	GT	-	-			2011-2290:2012-1322-T	g.chr3:54751700_54751701delGT	uc003dhf.2	+						CACNA2D3_uc011beu.1_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron|CACNA2D3_uc010hmv.1_Intron	NM_018398	NP_060868
MUC4	4585	broad.mit.edu	37	3	195494432	195494434	+	Intron	DEL	TTG	-	-			2011-2290:2012-1322-T	g.chr3:195494432_195494434delTTG	uc011bto.1	-						MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_Intron|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876
TFRC	7037	broad.mit.edu	37	3	195778729	195778730	+	3'UTR	INS	-	C	C			2011-2290:2012-1322-T	g.chr3:195778729_195778730insC	uc003fvz.3	-	19					TFRC_uc003fwa.3_3'UTR|TFRC_uc010hzy.2_3'UTR|TFRC_uc011btr.1_3'UTR	NM_003234	NP_003225
GAK	2580	broad.mit.edu	37	4	907700	907701	+	Intron	DEL	CA	-	-			2011-2290:2012-1322-T	g.chr4:907700_907701delCA	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_Intron|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246
SORCS2	57537	broad.mit.edu	37	4	7455278	7455279	+	Intron	DEL	TG	-	-			2011-2290:2012-1322-T	g.chr4:7455278_7455279delTG	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
CEP72	55722	broad.mit.edu	37	5	648652	648653	+	Intron	INS	-	G	G	rs71781429		2011-2290:2012-1322-T	g.chr5:648652_648653insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650066	650067	+	Intron	INS	-	G	G			2011-2290:2012-1322-T	g.chr5:650066_650067insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650178	650179	+	Intron	DEL	TG	-	-			2011-2290:2012-1322-T	g.chr5:650178_650179delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650334	650335	+	Intron	DEL	TG	-	-			2011-2290:2012-1322-T	g.chr5:650334_650335delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650411	650412	+	Intron	INS	-	G	G			2011-2290:2012-1322-T	g.chr5:650411_650412insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650428	650429	+	Intron	DEL	TG	-	-			2011-2290:2012-1322-T	g.chr5:650428_650429delTG	uc003jbf.2	+							NM_018140	NP_060610
HLA-G	3135	broad.mit.edu	37	6	29972816	29972819	+	Intron	DEL	TTCA	-	-	rs36122474		2011-2290:2012-1322-T	g.chr6:29972816_29972819delTTCA	uc011dmb.1	+						NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_5'Flank|HLA-J_uc003rtl.3_5'Flank|HLA-J_uc003nov.3_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29975193	29975194	+	Intron	DEL	AT	-	-			2011-2290:2012-1322-T	g.chr6:29975193_29975194delAT	uc011dmb.1	+						NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_Intron|HLA-J_uc003rtl.3_Intron|HLA-J_uc003nov.3_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29975197	29975199	+	Intron	DEL	CCC	-	-			2011-2290:2012-1322-T	g.chr6:29975197_29975199delCCC	uc011dmb.1	+						NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_Intron|HLA-J_uc003rtl.3_Intron|HLA-J_uc003nov.3_Intron	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29975201	29975203	+	Intron	DEL	GAA	-	-			2011-2290:2012-1322-T	g.chr6:29975201_29975203delGAA	uc011dmb.1	+						NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_Intron|HLA-J_uc003rtl.3_Intron|HLA-J_uc003nov.3_Intron	NM_002127	NP_002118
HLA-C	3107	broad.mit.edu	37	6	31239151	31239151	+	Intron	DEL	A	-	-	rs67420880		2011-2290:2012-1322-T	g.chr6:31239151delA	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_5'UTR|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Intron|HLA-B_uc003ntf.2_Intron	NM_002117	NP_002108
SMOC2	64094	broad.mit.edu	37	6	169016399	169016400	+	Intron	DEL	GG	-	-			2011-2290:2012-1322-T	g.chr6:169016399_169016400delGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
PTPRN2	5799	broad.mit.edu	37	7	158317179	158317180	+	Intron	INS	-	GTC	GTC	rs10641395;rs35653944		2011-2290:2012-1322-T	g.chr7:158317179_158317180insGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
MORN1	79906	broad.mit.edu	37	1	2263403	2263404	+	Intron	INS	-	G	G			2011-2292:2012-324-T	g.chr1:2263403_2263404insG	uc001ajb.1	-							NM_024848	NP_079124
MORN1	79906	broad.mit.edu	37	1	2263406	2263407	+	Intron	INS	-	C	C			2011-2292:2012-324-T	g.chr1:2263406_2263407insC	uc001ajb.1	-							NM_024848	NP_079124
NOTCH2	4853	broad.mit.edu	37	1	120548005	120548006	+	Frame_Shift_Ins	INS	-	A	A			2011-2292:2012-324-T	g.chr1:120548005_120548006insA	uc001eik.2	-	3	617_618	c.361_362insT	c.(361-363)TGCfs	p.C121fs	NOTCH2_uc001eil.2_Frame_Shift_Ins_p.C121fs|NOTCH2_uc001eim.3_Frame_Shift_Ins_p.C38fs	NM_024408	NP_077719
FAM5B	57795	broad.mit.edu	37	1	177242773	177242774	+	Intron	INS	-	A	A			2011-2292:2012-324-T	g.chr1:177242773_177242774insA	uc001glf.2	+						FAM5B_uc010pna.1_Intron|FAM5B_uc001glg.2_Intron	NM_021165	NP_066988
C1orf125	126859	broad.mit.edu	37	1	179461969	179461969	+	Intron	DEL	T	-	-			2011-2292:2012-324-T	g.chr1:179461969delT	uc001gmo.2	+						C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron	NM_144696	NP_653297
MLL2	8085	broad.mit.edu	37	12	49435469	49435470	+	Frame_Shift_Del	DEL	CG	-	-			2011-2292:2012-324-T	g.chr12:49435469_49435470delCG	uc001rta.3	-	30	6202_6203	c.6202_6203delCG	c.(6202-6204)CGGfs	p.R2068fs		NM_003482	NP_003473
RAB11FIP3	9727	broad.mit.edu	37	16	554202	554202	+	Intron	DEL	C	-	-			2011-2292:2012-324-T	g.chr16:554202delC	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
SLC38A10	124565	broad.mit.edu	37	17	79223306	79223308	+	Intron	DEL	GGA	-	-			2011-2292:2012-324-T	g.chr17:79223306_79223308delGGA	uc002jzz.1	-						SLC38A10_uc002jzy.1_Intron	NM_001037984	NP_001033073
CSNK1D	1453	broad.mit.edu	37	17	80212158	80212161	+	Intron	DEL	GTGC	-	-			2011-2292:2012-324-T	g.chr17:80212158_80212161delGTGC	uc002kej.2	-						SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Intron|CSNK1D_uc002kei.2_Intron|CSNK1D_uc010wvj.1_Intron|CSNK1D_uc010dil.2_5'Flank|CSNK1D_uc002keh.2_5'UTR|CSNK1D_uc010dim.1_5'Flank	NM_001893	NP_001884
REL	5966	broad.mit.edu	37	2	61118799	61118800	+	Intron	INS	-	T	T			2011-2292:2012-324-T	g.chr2:61118799_61118800insT	uc002sam.1	+						REL_uc002san.1_Intron	NM_002908	NP_002899
NFE2L2	4780	broad.mit.edu	37	2	178214734	178214735	+	Intron	DEL	GT	-	-			2011-2292:2012-324-T	g.chr2:178214734_178214735delGT	uc002uli.3	-						LOC100130691_uc002ulk.1_Intron	NM_001145412	NP_001138884
NFE2L2	4780	broad.mit.edu	37	2	178214765	178214766	+	Intron	DEL	GT	-	-			2011-2292:2012-324-T	g.chr2:178214765_178214766delGT	uc002uli.3	-						LOC100130691_uc002ulk.1_Intron	NM_001145412	NP_001138884
FOXP1	27086	broad.mit.edu	37	3	71101683	71101683	+	Intron	DEL	G	-	-			2011-2292:2012-324-T	g.chr3:71101683delG	uc003dol.2	-						FOXP1_uc003dom.2_Intron|FOXP1_uc003don.2_Intron|FOXP1_uc003doo.2_Intron|FOXP1_uc003dop.2_Intron|FOXP1_uc003doq.1_Intron|FOXP1_uc003doi.2_Intron|FOXP1_uc003doj.2_Intron|FOXP1_uc003dok.2_Intron	NM_032682	NP_116071
WWC1	23286	broad.mit.edu	37	5	167766913	167766914	+	Intron	DEL	TC	-	-	rs10593765		2011-2292:2012-324-T	g.chr5:167766913_167766914delTC	uc003lzu.2	+						WWC1_uc003lzv.2_Intron|WWC1_uc011den.1_Intron	NM_015238	NP_056053
NSD1	64324	broad.mit.edu	37	5	176696690	176696691	+	Frame_Shift_Ins	INS	-	T	T			2011-2292:2012-324-T	g.chr5:176696690_176696691insT	uc003mfr.3	+	16	5529_5530	c.5391_5392insT	c.(5389-5394)CTCTTTfs	p.L1797fs	NSD1_uc003mft.3_Frame_Shift_Ins_p.L1528fs|NSD1_uc003mfs.1_Frame_Shift_Ins_p.L1694fs|NSD1_uc011dfx.1_Frame_Shift_Ins_p.L1445fs	NM_022455	NP_071900
ADAP1	11033	broad.mit.edu	37	7	945326	945326	+	Intron	DEL	A	-	-			2011-2292:2012-324-T	g.chr7:945326delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946198	946199	+	Intron	INS	-	A	A	rs56051349		2011-2292:2012-324-T	g.chr7:946198_946199insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
DTX2	113878	broad.mit.edu	37	7	76116164	76116166	+	Intron	DEL	GCT	-	-	rs57887395;rs79153110	by1000genomes	2011-2292:2012-324-T	g.chr7:76116164_76116166delGCT	uc003uff.3	+						DTX2_uc011kgk.1_Intron|DTX2_uc003ufg.3_Intron|DTX2_uc003ufh.3_Intron|DTX2_uc003ufj.3_Intron	NM_020892	NP_065943
PTPRN2	5799	broad.mit.edu	37	7	158112900	158112901	+	Intron	DEL	CA	-	-			2011-2292:2012-324-T	g.chr7:158112900_158112901delCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158278091	158278092	+	Intron	DEL	CT	-	-	rs5888758		2011-2292:2012-324-T	g.chr7:158278091_158278092delCT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TACC1	6867	broad.mit.edu	37	8	38626947	38626947	+	Intron	DEL	G	-	-			2011-2292:2012-324-T	g.chr8:38626947delG	uc011lbz.1	+						TACC1_uc011lby.1_Intron|TACC1_uc003xma.2_Intron|TACC1_uc003xlz.2_Intron|TACC1_uc003xmc.3_Intron|TACC1_uc003xmb.3_Intron|TACC1_uc003xme.1_Intron|TACC1_uc003xmd.1_Intron|TACC1_uc010lwo.1_Intron	NM_006283	NP_006274
TSNARE1	203062	broad.mit.edu	37	8	143366603	143366604	+	Intron	INS	-	GGTG	GGTG			2011-2292:2012-324-T	g.chr8:143366603_143366604insGGTG	uc003ywk.2	-						TSNARE1_uc011lju.1_Intron|TSNARE1_uc003ywj.2_Intron|TSNARE1_uc003ywl.3_Intron	NM_145003	NP_659440
TTF1	7270	broad.mit.edu	37	9	135252875	135252878	+	Intron	DEL	GTGT	-	-			2011-2292:2012-324-T	g.chr9:135252875_135252878delGTGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTF1	7270	broad.mit.edu	37	9	135252971	135252971	+	Intron	DEL	T	-	-			2011-2292:2012-324-T	g.chr9:135252971delT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
KCNT1	57582	broad.mit.edu	37	9	138659896	138659897	+	Intron	DEL	AG	-	-			2011-2292:2012-324-T	g.chr9:138659896_138659897delAG	uc011mdq.1	+						KCNT1_uc011mdr.1_Intron|KCNT1_uc010nbf.2_Intron|KCNT1_uc004cgo.1_Intron	NM_020822	NP_065873
SHOX	6473	broad.mit.edu	37	X	583098	583099	+	5'Flank	DEL	AG	-	-			2011-2292:2012-324-T	g.chrX:583098_583099delAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
HIVEP3	59269	broad.mit.edu	37	1	42354705	42354706	+	Intron	DEL	AC	-	-			2011-2293:2012-1333-T	g.chr1:42354705_42354706delAC	uc001cgz.3	-						HIVEP3_uc001cha.3_Intron|HIVEP3_uc001chb.1_Intron	NM_024503	NP_078779
DDR2	4921	broad.mit.edu	37	1	162688756	162688757	+	Intron	INS	-	TT	TT			2011-2293:2012-1333-T	g.chr1:162688756_162688757insTT	uc001gcf.2	+						DDR2_uc001gcg.2_Intron	NM_001014796	NP_001014796
GPR123	84435	broad.mit.edu	37	10	134893164	134893165	+	Intron	INS	-	GTGT	GTGT	rs112176440		2011-2293:2012-1333-T	g.chr10:134893164_134893165insGTGT	uc001llw.2	+								
BRSK2	9024	broad.mit.edu	37	11	1430007	1430007	+	Intron	DEL	G	-	-	rs59441591		2011-2293:2012-1333-T	g.chr11:1430007delG	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron|BRSK2_uc001ltm.2_5'Flank	NM_003957	NP_003948
BRSK2	9024	broad.mit.edu	37	11	1430009	1430013	+	Intron	DEL	TTGGC	-	-	rs149317444;rs112616926;rs56958929;rs144527251	by1000genomes	2011-2293:2012-1333-T	g.chr11:1430009_1430013delTTGGC	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron|BRSK2_uc001ltm.2_5'Flank	NM_003957	NP_003948
PXMP2	5827	broad.mit.edu	37	12	133270293	133270293	+	Intron	DEL	A	-	-			2011-2293:2012-1333-T	g.chr12:133270293delA	uc001ukt.2	+						PGAM5_uc010tbr.1_Intron	NM_018663	NP_061133
COL4A2	1284	broad.mit.edu	37	13	111134267	111134268	+	Intron	INS	-	T	T	rs138178512;rs67199340		2011-2293:2012-1333-T	g.chr13:111134267_111134268insT	uc001vqx.2	+							NM_001846	NP_001837
INO80	54617	broad.mit.edu	37	15	41279934	41279934	+	Intron	DEL	A	-	-	rs76311249		2011-2293:2012-1333-T	g.chr15:41279934delA	uc001zni.2	-						INO80_uc010ucu.1_Intron	NM_017553	NP_060023
ABR	29	broad.mit.edu	37	17	1020789	1020790	+	Intron	INS	-	C	C			2011-2293:2012-1333-T	g.chr17:1020789_1020790insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
DHRS7C	201140	broad.mit.edu	37	17	9695706	9695707	+	5'Flank	DEL	GT	-	-			2011-2293:2012-1333-T	g.chr17:9695706_9695707delGT	uc010vvb.1	-						DHRS7C_uc010cof.2_5'Flank	NM_001105571	NP_001099041
INSR	3643	broad.mit.edu	37	19	7197661	7197662	+	Intron	DEL	GT	-	-			2011-2293:2012-1333-T	g.chr19:7197661_7197662delGT	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
TSSC1	7260	broad.mit.edu	37	2	3203521	3203522	+	Intron	DEL	GT	-	-	rs5828969		2011-2293:2012-1333-T	g.chr2:3203521_3203522delGT	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
AGPAT3	56894	broad.mit.edu	37	21	45379114	45379115	+	Intron	DEL	GT	-	-			2011-2293:2012-1333-T	g.chr21:45379114_45379115delGT	uc002zdv.2	+						AGPAT3_uc002zdw.2_Intron|AGPAT3_uc002zdx.2_Intron|AGPAT3_uc002zdy.2_5'Flank	NM_020132	NP_064517
C22orf9	23313	broad.mit.edu	37	22	45624974	45624977	+	Intron	DEL	CAAA	-	-			2011-2293:2012-1333-T	g.chr22:45624974_45624977delCAAA	uc003bfx.1	-							NM_001009880	NP_001009880
ADCY5	111	broad.mit.edu	37	3	123102705	123102706	+	Intron	DEL	CA	-	-			2011-2293:2012-1333-T	g.chr3:123102705_123102706delCA	uc003egh.1	-						ADCY5_uc003egg.1_Intron|ADCY5_uc003egi.1_Intron	NM_183357	NP_899200
IGF2BP2	10644	broad.mit.edu	37	3	185383189	185383190	+	Intron	INS	-	AT	AT			2011-2293:2012-1333-T	g.chr3:185383189_185383190insAT	uc003fpo.2	-						IGF2BP2_uc010hyi.2_Intron|IGF2BP2_uc010hyj.2_Intron|IGF2BP2_uc010hyk.2_Intron|IGF2BP2_uc010hyl.2_Intron|IGF2BP2_uc003fpp.2_Intron|IGF2BP2_uc003fpq.2_Intron	NM_006548	NP_006539
TACC1	6867	broad.mit.edu	37	8	38627163	38627164	+	Intron	DEL	GT	-	-			2011-2293:2012-1333-T	g.chr8:38627163_38627164delGT	uc011lbz.1	+						TACC1_uc011lby.1_Intron|TACC1_uc003xma.2_Intron|TACC1_uc003xlz.2_Intron|TACC1_uc003xmc.3_Intron|TACC1_uc003xmb.3_Intron|TACC1_uc003xme.1_Intron|TACC1_uc003xmd.1_Intron|TACC1_uc010lwo.1_Intron	NM_006283	NP_006274
TRAPPC9	83696	broad.mit.edu	37	8	141167101	141167101	+	Intron	DEL	T	-	-	rs151118440	by1000genomes	2011-2293:2012-1333-T	g.chr8:141167101delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
NUP214	8021	broad.mit.edu	37	9	134067553	134067553	+	Intron	DEL	A	-	-			2011-2293:2012-1333-T	g.chr9:134067553delA	uc004cag.2	+						NUP214_uc004cah.2_Intron|NUP214_uc004cai.2_Intron|NUP214_uc010mzg.2_Intron|NUP214_uc011mcg.1_Intron|NUP214_uc010mzf.2_Intron|NUP214_uc011mcf.1_Intron|NUP214_uc010mzh.1_Intron|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076
FMN2	56776	broad.mit.edu	37	1	240348333	240348333	+	Intron	DEL	C	-	-	rs66890903		2011-2297:2012-323-T	g.chr1:240348333delC	uc010pyd.1	+						FMN2_uc010pye.1_Intron	NM_020066	NP_064450
FAM107B	83641	broad.mit.edu	37	10	14610308	14610309	+	Intron	INS	-	TG	TG			2011-2297:2012-323-T	g.chr10:14610308_14610309insTG	uc001ina.1	-						FAM107B_uc010qbu.1_Intron|FAM107B_uc009xjg.1_Intron|FAM107B_uc001imy.1_Intron|FAM107B_uc001imz.1_Intron	NM_031453	NP_113641
TPCN2	219931	broad.mit.edu	37	11	68836546	68836546	+	Intron	DEL	C	-	-			2011-2297:2012-323-T	g.chr11:68836546delC	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
TPCN2	219931	broad.mit.edu	37	11	68836550	68836551	+	Intron	DEL	AG	-	-	rs79094004		2011-2297:2012-323-T	g.chr11:68836550_68836551delAG	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
ADAMTS17	170691	broad.mit.edu	37	15	100598506	100598507	+	Intron	INS	-	T	T	rs150896439;rs68090700	by1000genomes	2011-2297:2012-323-T	g.chr15:100598506_100598507insT	uc002bvv.1	-							NM_139057	NP_620688
UNKL	64718	broad.mit.edu	37	16	1437129	1437129	+	Intron	DEL	T	-	-			2011-2297:2012-323-T	g.chr16:1437129delT	uc010brn.1	-								
MAPK8IP3	23162	broad.mit.edu	37	16	1789733	1789734	+	Intron	DEL	GT	-	-			2011-2297:2012-323-T	g.chr16:1789733_1789734delGT	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
TP53	7157	broad.mit.edu	37	17	7579442	7579442	+	Frame_Shift_Del	DEL	G	-	-			2011-2297:2012-323-T	g.chr17:7579442delG	uc002gim.2	-	4	439	c.245delC	c.(244-246)CCGfs	p.P82fs	TP53_uc002gig.1_Frame_Shift_Del_p.P82fs|TP53_uc002gih.2_Frame_Shift_Del_p.P82fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Frame_Shift_Del_p.P82fs|TP53_uc010cni.1_Frame_Shift_Del_p.P82fs|TP53_uc002gij.2_Frame_Shift_Del_p.P82fs|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Frame_Shift_Del_p.P43fs|TP53_uc010cnk.1_Frame_Shift_Del_p.P97fs	NM_001126112	NP_001119584
NACA2	342538	broad.mit.edu	37	17	59668338	59668338	+	Frame_Shift_Del	DEL	T	-	-			2011-2297:2012-323-T	g.chr17:59668338delT	uc002izj.2	-	1	230	c.204delA	c.(202-204)AAAfs	p.K68fs		NM_199290	NP_954984
C20orf26	26074	broad.mit.edu	37	20	20338154	20338155	+	Intron	INS	-	GT	GT	rs144757305		2011-2297:2012-323-T	g.chr20:20338154_20338155insGT	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
MN1	4330	broad.mit.edu	37	22	28195625	28195627	+	In_Frame_Del	DEL	GCT	-	-			2011-2297:2012-323-T	g.chr22:28195625_28195627delGCT	uc003adj.2	-	1	1860_1862	c.905_907delAGC	c.(904-909)CAGCCC>CCC	p.Q302del		NM_002430	NP_002421
TNK2	10188	broad.mit.edu	37	3	195597917	195597918	+	Intron	INS	-	G	G			2011-2297:2012-323-T	g.chr3:195597917_195597918insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
SLC12A7	10723	broad.mit.edu	37	5	1070240	1070241	+	Intron	INS	-	A	A			2011-2297:2012-323-T	g.chr5:1070240_1070241insA	uc003jbu.2	-							NM_006598	NP_006589
DNAH5	1767	broad.mit.edu	37	5	13839401	13839401	+	Intron	DEL	A	-	-			2011-2297:2012-323-T	g.chr5:13839401delA	uc003jfd.2	-							NM_001369	NP_001360
ODZ2	57451	broad.mit.edu	37	5	166854853	166854854	+	Intron	INS	-	G	G	rs34196468		2011-2297:2012-323-T	g.chr5:166854853_166854854insG	uc010jjd.2	+							NM_001122679	NP_001116151
MMP16	4325	broad.mit.edu	37	8	89340035	89340036	+	5'Flank	DEL	AC	-	-			2011-2297:2012-323-T	g.chr8:89340035_89340036delAC	uc003yeb.3	-						MMP16_uc003yec.2_5'Flank	NM_005941	NP_005932
KRTAP5-6	440023	broad.mit.edu	37	11	1718454	1718454	+	5'UTR	DEL	C	-	-			2011-2298:2012-322-T	g.chr11:1718454delC	uc001lua.2	+	1						NM_001012416	NP_001012416
CD5	921	broad.mit.edu	37	11	60871545	60871546	+	Intron	DEL	TG	-	-	rs72188050		2011-2298:2012-322-T	g.chr11:60871545_60871546delTG	uc009ynk.2	+							NM_014207	NP_055022
JAG2	3714	broad.mit.edu	37	14	105629931	105629932	+	Intron	INS	-	T	T			2011-2298:2012-322-T	g.chr14:105629931_105629932insT	uc001yqg.2	-						JAG2_uc001yqh.2_Intron	NM_002226	NP_002217
SOLH	6650	broad.mit.edu	37	16	594824	594825	+	Intron	INS	-	T	T			2011-2298:2012-322-T	g.chr16:594824_594825insT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
OSGIN1	29948	broad.mit.edu	37	16	83984416	83984419	+	Intron	DEL	ACAT	-	-	rs139070918		2011-2298:2012-322-T	g.chr16:83984416_83984419delACAT	uc002fha.2	+						OSGIN1_uc002fhb.2_Intron|OSGIN1_uc002fhc.2_5'Flank	NM_013370	NP_037502
MC1R	4157	broad.mit.edu	37	16	89981310	89981311	+	5'Flank	INS	-	A	A			2011-2298:2012-322-T	g.chr16:89981310_89981311insA	uc002fpe.3	+						uc010ciy.1_RNA	NM_002386	NP_002377
MC1R	4157	broad.mit.edu	37	16	89981311	89981312	+	5'Flank	INS	-	A	A			2011-2298:2012-322-T	g.chr16:89981311_89981312insA	uc002fpe.3	+						uc010ciy.1_RNA	NM_002386	NP_002377
TBC1D16	125058	broad.mit.edu	37	17	77998194	77998195	+	Intron	DEL	AC	-	-			2011-2298:2012-322-T	g.chr17:77998194_77998195delAC	uc002jxj.2	-							NM_019020	NP_061893
TBCD	6904	broad.mit.edu	37	17	80806756	80806756	+	Intron	DEL	C	-	-	rs67238067		2011-2298:2012-322-T	g.chr17:80806756delC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
ST8SIA5	29906	broad.mit.edu	37	18	44337434	44337435	+	5'Flank	INS	-	A	A	rs75150290		2011-2298:2012-322-T	g.chr18:44337434_44337435insA	uc002lcj.1	-						ST8SIA5_uc010xcy.1_5'Flank|ST8SIA5_uc010xcz.1_5'Flank|ST8SIA5_uc010dno.1_5'Flank	NM_013305	NP_037437
BCL2	596	broad.mit.edu	37	18	60866177	60866178	+	Intron	INS	-	AG	AG			2011-2298:2012-322-T	g.chr18:60866177_60866178insAG	uc002lit.1	-						BCL2_uc002liu.1_Intron	NM_000633	NP_000624
ZNF554	115196	broad.mit.edu	37	19	2818347	2818348	+	5'Flank	INS	-	C	C			2011-2298:2012-322-T	g.chr19:2818347_2818348insC	uc002lwm.2	+						ZNF554_uc002lwl.2_5'Flank	NM_001102651	NP_001096121
FBN3	84467	broad.mit.edu	37	19	8201633	8201634	+	Intron	INS	-	G	G			2011-2298:2012-322-T	g.chr19:8201633_8201634insG	uc002mjf.2	-							NM_032447	NP_115823
AGXT	189	broad.mit.edu	37	2	241811807	241811809	+	Intron	DEL	GGT	-	-	rs62189565	by1000genomes	2011-2298:2012-322-T	g.chr2:241811807_241811809delGGT	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
TAF4	6874	broad.mit.edu	37	20	60557730	60557730	+	Intron	DEL	C	-	-			2011-2298:2012-322-T	g.chr20:60557730delC	uc002ybs.2	-							NM_003185	NP_003176
TRPM2	7226	broad.mit.edu	37	21	45815564	45815564	+	Intron	DEL	G	-	-			2011-2298:2012-322-T	g.chr21:45815564delG	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron	NM_003307	NP_003298
CHST13	166012	broad.mit.edu	37	3	126258641	126258643	+	Intron	DEL	CAC	-	-			2011-2298:2012-322-T	g.chr3:126258641_126258643delCAC	uc003eja.2	+							NM_152889	NP_690849
GAK	2580	broad.mit.edu	37	4	880960	880966	+	Intron	DEL	ACACGCG	-	-			2011-2298:2012-322-T	g.chr4:880960_880966delACACGCG	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	880968	880970	+	Intron	DEL	ACA	-	-			2011-2298:2012-322-T	g.chr4:880968_880970delACA	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
SLC12A7	10723	broad.mit.edu	37	5	1072275	1072276	+	Intron	INS	-	G	G			2011-2298:2012-322-T	g.chr5:1072275_1072276insG	uc003jbu.2	-							NM_006598	NP_006589
SLCO4C1	353189	broad.mit.edu	37	5	101593023	101593023	+	Intron	DEL	A	-	-			2011-2298:2012-322-T	g.chr5:101593023delA	uc003knm.2	-							NM_180991	NP_851322
CAPN11	11131	broad.mit.edu	37	6	44149913	44149914	+	Intron	DEL	AT	-	-	rs70993437;rs71802724		2011-2298:2012-322-T	g.chr6:44149913_44149914delAT	uc003owt.1	+						CAPN11_uc011dvn.1_Intron	NM_007058	NP_008989
SUN1	23353	broad.mit.edu	37	7	873703	873703	+	Intron	DEL	G	-	-	rs66513784		2011-2298:2012-322-T	g.chr7:873703delG	uc011jvp.1	+						SUN1_uc010ksa.1_Intron|SUN1_uc003sje.1_Intron|SUN1_uc003sjf.2_Intron|SUN1_uc011jvq.1_Intron	NM_001130965	NP_001124437
SUN1	23353	broad.mit.edu	37	7	873707	873707	+	Intron	DEL	T	-	-	rs58126002		2011-2298:2012-322-T	g.chr7:873707delT	uc011jvp.1	+						SUN1_uc010ksa.1_Intron|SUN1_uc003sje.1_Intron|SUN1_uc003sjf.2_Intron|SUN1_uc011jvq.1_Intron	NM_001130965	NP_001124437
ADAP1	11033	broad.mit.edu	37	7	946128	946129	+	Intron	INS	-	A	A			2011-2298:2012-322-T	g.chr7:946128_946129insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	157449993	157449996	+	Intron	DEL	ACAC	-	-			2011-2298:2012-322-T	g.chr7:157449993_157449996delACAC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
UBXN2B	137886	broad.mit.edu	37	8	59337247	59337247	+	Intron	DEL	G	-	-			2011-2298:2012-322-T	g.chr8:59337247delG	uc003xtl.2	+							NM_001077619	NP_001071087
PKHD1L1	93035	broad.mit.edu	37	8	110509584	110509586	+	Intron	DEL	CTC	-	-	rs72408989;rs61314588		2011-2298:2012-322-T	g.chr8:110509584_110509586delCTC	uc003yne.2	+							NM_177531	NP_803875
POMT1	10585	broad.mit.edu	37	9	134391157	134391158	+	Intron	INS	-	C	C	rs71372740		2011-2298:2012-322-T	g.chr9:134391157_134391158insC	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
TTF1	7270	broad.mit.edu	37	9	135252836	135252839	+	Intron	DEL	GGTG	-	-			2011-2298:2012-322-T	g.chr9:135252836_135252839delGGTG	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
ADAMTSL2	9719	broad.mit.edu	37	9	136429200	136429201	+	Intron	DEL	GA	-	-			2011-2298:2012-322-T	g.chr9:136429200_136429201delGA	uc011mdl.1	+						ADAMTSL2_uc004cei.2_Intron|ADAMTSL2_uc004cej.2_5'Flank	NM_001145320	NP_001138792
SPAG17	200162	broad.mit.edu	37	1	118514723	118514724	+	Intron	INS	-	A	A			2011-2299:2012-1334-T	g.chr1:118514723_118514724insA	uc001ehk.2	-							NM_206996	NP_996879
LGR6	59352	broad.mit.edu	37	1	202173587	202173588	+	Intron	INS	-	CC	CC	rs143610412	by1000genomes	2011-2299:2012-1334-T	g.chr1:202173587_202173588insCC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
CCDC6	8030	broad.mit.edu	37	10	61642263	61642267	+	Intron	DEL	AAGGA	-	-			2011-2299:2012-1334-T	g.chr10:61642263_61642267delAAGGA	uc001jks.3	-							NM_005436	NP_005427
CCDC6	8030	broad.mit.edu	37	10	61642278	61642279	+	Intron	DEL	AG	-	-	rs71006297		2011-2299:2012-1334-T	g.chr10:61642278_61642279delAG	uc001jks.3	-							NM_005436	NP_005427
CCDC6	8030	broad.mit.edu	37	10	61642286	61642290	+	Intron	DEL	AAGGA	-	-			2011-2299:2012-1334-T	g.chr10:61642286_61642290delAAGGA	uc001jks.3	-							NM_005436	NP_005427
CCDC6	8030	broad.mit.edu	37	10	61642346	61642347	+	Intron	DEL	CG	-	-	rs74706779		2011-2299:2012-1334-T	g.chr10:61642346_61642347delCG	uc001jks.3	-							NM_005436	NP_005427
PTEN	5728	broad.mit.edu	37	10	89626375	89626376	+	Intron	INS	-	C	C	rs142681768;rs66749138	by1000genomes	2011-2299:2012-1334-T	g.chr10:89626375_89626376insC	uc001kfb.2	+							NM_000314	NP_000305
INPP5A	3632	broad.mit.edu	37	10	134577161	134577162	+	Intron	DEL	AT	-	-	rs10534980;rs76083849		2011-2299:2012-1334-T	g.chr10:134577161_134577162delAT	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
OR5L2	26338	broad.mit.edu	37	11	55594238	55594243	+	5'Flank	DEL	TAAGTA	-	-	rs71468580;rs66960139		2011-2299:2012-1334-T	g.chr11:55594238_55594243delTAAGTA	uc001nhy.1	+							NM_001004739	NP_001004739
SHANK2	22941	broad.mit.edu	37	11	70633288	70633290	+	Intron	DEL	CAA	-	-			2011-2299:2012-1334-T	g.chr11:70633288_70633290delCAA	uc001oqc.2	-							NM_012309	NP_036441
FAT3	120114	broad.mit.edu	37	11	92438775	92438776	+	Intron	INS	-	TA	TA			2011-2299:2012-1334-T	g.chr11:92438775_92438776insTA	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438778	92438779	+	Intron	INS	-	ATC	ATC			2011-2299:2012-1334-T	g.chr11:92438778_92438779insATC	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438810	92438810	+	Intron	DEL	T	-	-	rs145584143	by1000genomes	2011-2299:2012-1334-T	g.chr11:92438810delT	uc001pdj.3	+							NM_001008781	NP_001008781
PHLDB1	23187	broad.mit.edu	37	11	118480022	118480023	+	Intron	INS	-	C	C			2011-2299:2012-1334-T	g.chr11:118480022_118480023insC	uc001ptr.1	+						PHLDB1_uc010ryh.1_Intron|PHLDB1_uc001pts.2_Intron|PHLDB1_uc001ptt.2_Intron|PHLDB1_uc001ptu.1_Intron	NM_015157	NP_055972
PHLDB1	23187	broad.mit.edu	37	11	118480028	118480028	+	Intron	DEL	C	-	-			2011-2299:2012-1334-T	g.chr11:118480028delC	uc001ptr.1	+						PHLDB1_uc010ryh.1_Intron|PHLDB1_uc001pts.2_Intron|PHLDB1_uc001ptt.2_Intron|PHLDB1_uc001ptu.1_Intron	NM_015157	NP_055972
B4GALNT3	283358	broad.mit.edu	37	12	620604	620605	+	Intron	INS	-	CTT	CTT			2011-2299:2012-1334-T	g.chr12:620604_620605insCTT	uc001qii.1	+							NM_173593	NP_775864
PTPN6	5777	broad.mit.edu	37	12	7069423	7069423	+	Intron	DEL	G	-	-			2011-2299:2012-1334-T	g.chr12:7069423delG	uc001qsb.2	+						PTPN6_uc001qsa.1_Intron|PTPN6_uc010sfr.1_Intron|PTPN6_uc009zfl.1_Intron|PTPN6_uc010sfs.1_Intron	NM_002831	NP_002822
DCTN2	10540	broad.mit.edu	37	12	57929244	57929245	+	Intron	DEL	AC	-	-			2011-2299:2012-1334-T	g.chr12:57929244_57929245delAC	uc001som.1	-						DCTN2_uc009zpu.1_Intron|DCTN2_uc009zpv.1_Intron|DCTN2_uc009zpw.1_Intron|DCTN2_uc001soo.1_Intron|DCTN2_uc001son.1_Intron|DCTN2_uc001sop.1_Intron|DCTN2_uc001soq.1_Intron|DCTN2_uc009zpx.1_Intron	NM_006400	NP_006391
RB1	5925	broad.mit.edu	37	13	48919299	48919300	+	Frame_Shift_Ins	INS	-	TGATG	TGATG			2011-2299:2012-1334-T	g.chr13:48919299_48919300insTGATG	uc001vcb.2	+	4	630_631	c.464_465insTGATG	c.(463-465)TATfs	p.Y155fs	RB1_uc010acs.1_Intron	NM_000321	NP_000312
MYO9A	4649	broad.mit.edu	37	15	72395540	72395540	+	Intron	DEL	A	-	-			2011-2299:2012-1334-T	g.chr15:72395540delA	uc002atl.3	-						MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Intron	NM_006901	NP_008832
ABAT	18	broad.mit.edu	37	16	8807140	8807141	+	Intron	INS	-	A	A	rs150693734		2011-2299:2012-1334-T	g.chr16:8807140_8807141insA	uc002czc.3	+						ABAT_uc002czd.3_5'UTR|ABAT_uc010buh.2_5'UTR	NM_020686	NP_065737
TCF25	22980	broad.mit.edu	37	16	89951451	89951451	+	Intron	DEL	C	-	-			2011-2299:2012-1334-T	g.chr16:89951451delC	uc002fpb.2	+						TCF25_uc002fpc.2_Intron	NM_014972	NP_055787
ABR	29	broad.mit.edu	37	17	1049796	1049796	+	Intron	DEL	C	-	-	rs67743896		2011-2299:2012-1334-T	g.chr17:1049796delC	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
TP53	7157	broad.mit.edu	37	17	7579400	7579400	+	Frame_Shift_Del	DEL	G	-	-			2011-2299:2012-1334-T	g.chr17:7579400delG	uc002gim.2	-	4	481	c.287delC	c.(286-288)TCTfs	p.S96fs	TP53_uc002gig.1_Frame_Shift_Del_p.S96fs|TP53_uc002gih.2_Frame_Shift_Del_p.S96fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Frame_Shift_Del_p.S96fs|TP53_uc010cni.1_Frame_Shift_Del_p.S96fs|TP53_uc002gij.2_Frame_Shift_Del_p.S96fs|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Frame_Shift_Del_p.S57fs|TP53_uc010cnk.1_Frame_Shift_Del_p.S111fs	NM_001126112	NP_001119584
CDRT4	284040	broad.mit.edu	37	17	15368347	15368350	+	Intron	DEL	ACAG	-	-	rs72379161		2011-2299:2012-1334-T	g.chr17:15368347_15368350delACAG	uc002gop.1	-						CDRT4_uc010vvw.1_Intron|FAM18B2_uc010vvx.1_Intron	NM_173622	NP_775893
MED1	5469	broad.mit.edu	37	17	37607721	37607722	+	5'Flank	INS	-	T	T	rs35839148;rs72286452		2011-2299:2012-1334-T	g.chr17:37607721_37607722insT	uc002hrv.3	-						MED1_uc010wee.1_5'Flank|MED1_uc002hru.2_5'Flank	NM_004774	NP_004765
SETBP1	26040	broad.mit.edu	37	18	42456670	42456671	+	Intron	INS	-	TCTT	TCTT	rs142511824;rs145744783	by1000genomes	2011-2299:2012-1334-T	g.chr18:42456670_42456671insTCTT	uc010dni.2	+						SETBP1_uc002lay.2_Frame_Shift_Ins_p.L227fs	NM_015559	NP_056374
U2AF2	11338	broad.mit.edu	37	19	56181884	56181884	+	Intron	DEL	G	-	-	rs66506071		2011-2299:2012-1334-T	g.chr19:56181884delG	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
SH3YL1	26751	broad.mit.edu	37	2	236010	236011	+	Intron	INS	-	GCA	GCA	rs71852552		2011-2299:2012-1334-T	g.chr2:236010_236011insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
SNTG2	54221	broad.mit.edu	37	2	960889	960890	+	Intron	INS	-	T	T	rs67602909		2011-2299:2012-1334-T	g.chr2:960889_960890insT	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
PXDN	7837	broad.mit.edu	37	2	1715115	1715116	+	Intron	DEL	CA	-	-			2011-2299:2012-1334-T	g.chr2:1715115_1715116delCA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87623883	87623883	+	Intron	DEL	A	-	-			2011-2299:2012-1334-T	g.chr2:87623883delA	uc002srs.3	+								
CDH4	1002	broad.mit.edu	37	20	60067211	60067213	+	Intron	DEL	TGT	-	-			2011-2299:2012-1334-T	g.chr20:60067211_60067213delTGT	uc002ybn.1	+							NM_001794	NP_001785
TP63	8626	broad.mit.edu	37	3	189507251	189507252	+	Intron	INS	-	T	T			2011-2299:2012-1334-T	g.chr3:189507251_189507252insT	uc003fry.2	+						TP63_uc003frx.2_Intron|TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsa.2_5'Flank|TP63_uc003fsb.2_5'Flank|TP63_uc003fsc.2_5'Flank|TP63_uc003fsd.2_5'Flank|TP63_uc010hzd.1_5'Flank	NM_003722	NP_003713
MTNR1A	4543	broad.mit.edu	37	4	187461961	187461962	+	Intron	INS	-	GAAG	GAAG	rs34538990		2011-2299:2012-1334-T	g.chr4:187461961_187461962insGAAG	uc003izd.1	-							NM_005958	NP_005949
CEP72	55722	broad.mit.edu	37	5	649353	649354	+	Intron	INS	-	G	G			2011-2299:2012-1334-T	g.chr5:649353_649354insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649393	649394	+	Intron	INS	-	G	G			2011-2299:2012-1334-T	g.chr5:649393_649394insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650218	650219	+	Intron	DEL	TG	-	-			2011-2299:2012-1334-T	g.chr5:650218_650219delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650292	650293	+	Intron	INS	-	G	G			2011-2299:2012-1334-T	g.chr5:650292_650293insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650334	650335	+	Intron	DEL	TG	-	-			2011-2299:2012-1334-T	g.chr5:650334_650335delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650411	650412	+	Intron	INS	-	G	G			2011-2299:2012-1334-T	g.chr5:650411_650412insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650518	650519	+	Intron	INS	-	G	G			2011-2299:2012-1334-T	g.chr5:650518_650519insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650525	650526	+	Intron	INS	-	A	A			2011-2299:2012-1334-T	g.chr5:650525_650526insA	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650532	650537	+	Intron	DEL	AGGTGT	-	-			2011-2299:2012-1334-T	g.chr5:650532_650537delAGGTGT	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650551	650551	+	Intron	DEL	G	-	-			2011-2299:2012-1334-T	g.chr5:650551delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650554	650555	+	Intron	INS	-	TG	TG			2011-2299:2012-1334-T	g.chr5:650554_650555insTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650576	650576	+	Intron	DEL	G	-	-			2011-2299:2012-1334-T	g.chr5:650576delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650798	650799	+	Intron	DEL	TG	-	-			2011-2299:2012-1334-T	g.chr5:650798_650799delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650862	650863	+	Intron	INS	-	G	G			2011-2299:2012-1334-T	g.chr5:650862_650863insG	uc003jbf.2	+							NM_018140	NP_060610
SLC6A3	6531	broad.mit.edu	37	5	1422562	1422563	+	Intron	DEL	CA	-	-			2011-2299:2012-1334-T	g.chr5:1422562_1422563delCA	uc003jck.2	-							NM_001044	NP_001035
SLC6A3	6531	broad.mit.edu	37	5	1422600	1422601	+	Intron	DEL	CA	-	-			2011-2299:2012-1334-T	g.chr5:1422600_1422601delCA	uc003jck.2	-							NM_001044	NP_001035
UNC93A	54346	broad.mit.edu	37	6	167709066	167709067	+	Intron	INS	-	G	G			2011-2299:2012-1334-T	g.chr6:167709066_167709067insG	uc003qvq.2	+						UNC93A_uc003qvr.2_Intron	NM_018974	NP_061847
ADAP1	11033	broad.mit.edu	37	7	945360	945361	+	Intron	INS	-	A	A	rs147722082	by1000genomes	2011-2299:2012-1334-T	g.chr7:945360_945361insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf23	79161	broad.mit.edu	37	7	86827351	86827353	+	In_Frame_Del	DEL	ATC	-	-			2011-2299:2012-1334-T	g.chr7:86827351_86827353delATC	uc003uio.2	-	3	350_352	c.138_140delGAT	c.(136-141)CTGATA>CTA	p.I47del		NM_024315	NP_077291
CNTNAP2	26047	broad.mit.edu	37	7	148106475	148106476	+	Intron	INS	-	TT	TT	rs72268642;rs61232377		2011-2299:2012-1334-T	g.chr7:148106475_148106476insTT	uc003weu.1	+						CNTNAP2_uc003wev.1_Intron	NM_014141	NP_054860
CNTNAP2	26047	broad.mit.edu	37	7	148106477	148106478	+	Intron	INS	-	TG	TG	rs71188981;rs60451214		2011-2299:2012-1334-T	g.chr7:148106477_148106478insTG	uc003weu.1	+						CNTNAP2_uc003wev.1_Intron	NM_014141	NP_054860
PTPRN2	5799	broad.mit.edu	37	7	157864427	157864427	+	Intron	DEL	G	-	-			2011-2299:2012-1334-T	g.chr7:157864427delG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
UBR5	51366	broad.mit.edu	37	8	103276944	103276945	+	Intron	INS	-	A	A	rs71574038		2011-2299:2012-1334-T	g.chr8:103276944_103276945insA	uc003ykr.1	-						UBR5_uc003yks.1_Intron|UBR5_uc003ykq.2_Intron	NM_015902	NP_056986
CSMD3	114788	broad.mit.edu	37	8	113363348	113363349	+	Intron	INS	-	C	C			2011-2299:2012-1334-T	g.chr8:113363348_113363349insC	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
TRAPPC9	83696	broad.mit.edu	37	8	141167143	141167143	+	Intron	DEL	T	-	-	rs67192772		2011-2299:2012-1334-T	g.chr8:141167143delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
TOP1MT	116447	broad.mit.edu	37	8	144404116	144404117	+	Intron	DEL	CA	-	-			2011-2299:2012-1334-T	g.chr8:144404116_144404117delCA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
DOCK8	81704	broad.mit.edu	37	9	400802	400803	+	Intron	INS	-	CCA	CCA			2011-2299:2012-1334-T	g.chr9:400802_400803insCCA	uc003zgf.2	+						DOCK8_uc010mgu.2_Intron|DOCK8_uc010mgv.2_Intron|DOCK8_uc010mgw.1_Intron|DOCK8_uc003zgk.2_Intron	NM_203447	NP_982272
NUP214	8021	broad.mit.edu	37	9	134000768	134000768	+	5'Flank	DEL	T	-	-	rs3215836		2011-2299:2012-1334-T	g.chr9:134000768delT	uc004cag.2	+						NUP214_uc004cah.2_5'Flank|NUP214_uc004caf.1_5'Flank	NM_005085	NP_005076
POMT1	10585	broad.mit.edu	37	9	134391531	134391534	+	Intron	DEL	CTAA	-	-			2011-2299:2012-1334-T	g.chr9:134391531_134391534delCTAA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
LCN6	158062	broad.mit.edu	37	9	139642116	139642117	+	Intron	INS	-	C	C			2011-2299:2012-1334-T	g.chr9:139642116_139642117insC	uc004ciy.2	-						LCN10_uc004ciw.2_Intron|uc004ciz.1_RNA	NM_198946	NP_945184
HUWE1	10075	broad.mit.edu	37	X	53565683	53565684	+	Intron	INS	-	CTCT	CTCT	rs3834703		2011-2299:2012-1334-T	g.chrX:53565683_53565684insCTCT	uc004dsp.2	-						HUWE1_uc004dsn.2_Intron|HUWE1_uc004dsq.1_Intron	NM_031407	NP_113584
AGRN	375790	broad.mit.edu	37	1	966468	966469	+	Intron	DEL	TG	-	-			2011-2300:2012-321-T	g.chr1:966468_966469delTG	uc001ack.1	+							NM_198576	NP_940978
UTS2	10911	broad.mit.edu	37	1	7963190	7963192	+	Intron	DEL	CTC	-	-			2011-2300:2012-321-T	g.chr1:7963190_7963192delCTC	uc001aoq.2	-							NM_006786	NP_006777
LRRC27	80313	broad.mit.edu	37	10	134172629	134172630	+	Intron	INS	-	AGC	AGC			2011-2300:2012-321-T	g.chr10:134172629_134172630insAGC	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
KNDC1	85442	broad.mit.edu	37	10	135037274	135037275	+	Intron	INS	-	GT	GT	rs143526042		2011-2300:2012-321-T	g.chr10:135037274_135037275insGT	uc001llz.1	+							NM_152643	NP_689856
MYO9A	4649	broad.mit.edu	37	15	72395807	72395808	+	Intron	INS	-	GTG	GTG			2011-2300:2012-321-T	g.chr15:72395807_72395808insGTG	uc002atl.3	-						MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Intron	NM_006901	NP_008832
MYO9A	4649	broad.mit.edu	37	15	72395819	72395820	+	Intron	INS	-	GTG	GTG			2011-2300:2012-321-T	g.chr15:72395819_72395820insGTG	uc002atl.3	-						MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Intron	NM_006901	NP_008832
SOLH	6650	broad.mit.edu	37	16	594810	594811	+	Intron	INS	-	T	T	rs67790703		2011-2300:2012-321-T	g.chr16:594810_594811insT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
SOLH	6650	broad.mit.edu	37	16	594824	594825	+	Intron	INS	-	T	T			2011-2300:2012-321-T	g.chr16:594824_594825insT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
SOLH	6650	broad.mit.edu	37	16	594825	594826	+	Intron	INS	-	GT	GT			2011-2300:2012-321-T	g.chr16:594825_594826insGT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
DPEP1	1800	broad.mit.edu	37	16	89701002	89701003	+	Intron	INS	-	C	C			2011-2300:2012-321-T	g.chr16:89701002_89701003insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
TBCD	6904	broad.mit.edu	37	17	80807066	80807067	+	Intron	INS	-	C	C	rs57484051		2011-2300:2012-321-T	g.chr17:80807066_80807067insC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
PXDN	7837	broad.mit.edu	37	2	1724149	1724149	+	Intron	DEL	G	-	-			2011-2300:2012-321-T	g.chr2:1724149delG	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
TSSC1	7260	broad.mit.edu	37	2	3299013	3299013	+	Intron	DEL	C	-	-			2011-2300:2012-321-T	g.chr2:3299013delC	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
PIK3CA	5290	broad.mit.edu	37	3	178928076	178928084	+	In_Frame_Del	DEL	TTAGAAGAT	-	-			2011-2300:2012-321-T	g.chr3:178928076_178928084delTTAGAAGAT	uc003fjk.2	+	8	1511_1519	c.1354_1362delTTAGAAGAT	c.(1354-1362)TTAGAAGATdel	p.LED452del		NM_006218	NP_006209
PDE6B	5158	broad.mit.edu	37	4	628980	628987	+	Intron	DEL	GCCTGCCC	-	-	rs143422095	by1000genomes	2011-2300:2012-321-T	g.chr4:628980_628987delGCCTGCCC	uc003gap.2	+						PDE6B_uc003gao.3_Intron	NM_000283	NP_000274
RNGTT	8732	broad.mit.edu	37	6	89638989	89638989	+	Intron	DEL	A	-	-	rs111616936		2011-2300:2012-321-T	g.chr6:89638989delA	uc003pmr.2	-						RNGTT_uc003pms.2_Intron|RNGTT_uc011dzu.1_Intron|RNGTT_uc003pmt.2_Intron	NM_003800	NP_003791
ADAP1	11033	broad.mit.edu	37	7	946060	946061	+	Intron	INS	-	A	A	rs145100642	by1000genomes	2011-2300:2012-321-T	g.chr7:946060_946061insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982929	982931	+	Intron	DEL	AGA	-	-			2011-2300:2012-321-T	g.chr7:982929_982931delAGA	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	158316507	158316508	+	Intron	INS	-	GTC	GTC			2011-2300:2012-321-T	g.chr7:158316507_158316508insGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1781260	1781261	+	Intron	DEL	GC	-	-	rs140906618;rs150664566	by1000genomes	2011-2300:2012-321-T	g.chr8:1781260_1781261delGC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
RIMS2	9699	broad.mit.edu	37	8	104922519	104922520	+	Intron	INS	-	T	T	rs112118632		2011-2300:2012-321-T	g.chr8:104922519_104922520insT	uc003yls.2	+						RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Intron|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron|RIMS2_uc003ylt.2_5'Flank	NM_014677	NP_055492
TTF1	7270	broad.mit.edu	37	9	135252966	135252967	+	Intron	DEL	GT	-	-			2011-2300:2012-321-T	g.chr9:135252966_135252967delGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
ADARB2	105	broad.mit.edu	37	10	1419359	1419360	+	Intron	DEL	GT	-	-			2011-2301:2012-320-T	g.chr10:1419359_1419360delGT	uc009xhq.2	-							NM_018702	NP_061172
ALDH3B2	222	broad.mit.edu	37	11	67436702	67436703	+	Intron	DEL	TG	-	-			2011-2301:2012-320-T	g.chr11:67436702_67436703delTG	uc001omr.2	-						ALDH3B2_uc001oms.2_Intron|ALDH3B2_uc009ysa.1_Intron	NM_000695	NP_000686
PXMP2	5827	broad.mit.edu	37	12	133270293	133270293	+	Intron	DEL	A	-	-			2011-2301:2012-320-T	g.chr12:133270293delA	uc001ukt.2	+						PGAM5_uc010tbr.1_Intron	NM_018663	NP_061133
FAM70B	348013	broad.mit.edu	37	13	114477547	114477550	+	Intron	DEL	ACAC	-	-			2011-2301:2012-320-T	g.chr13:114477547_114477550delACAC	uc001vuh.2	+							NM_182614	NP_872420
LMF1	64788	broad.mit.edu	37	16	998741	998742	+	Intron	INS	-	CCA	CCA	rs71142714		2011-2301:2012-320-T	g.chr16:998741_998742insCCA	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
RPTOR	57521	broad.mit.edu	37	17	78608446	78608447	+	Intron	INS	-	TGTG	TGTG			2011-2301:2012-320-T	g.chr17:78608446_78608447insTGTG	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
TBCD	6904	broad.mit.edu	37	17	80807051	80807052	+	Intron	DEL	GC	-	-	rs60879470		2011-2301:2012-320-T	g.chr17:80807051_80807052delGC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
KATNAL2	83473	broad.mit.edu	37	18	44553364	44553365	+	Intron	INS	-	GT	GT	rs145061583	by1000genomes	2011-2301:2012-320-T	g.chr18:44553364_44553365insGT	uc002lco.2	+						KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Intron	NM_031303	NP_112593
LPPR3	79948	broad.mit.edu	37	19	815461	815464	+	Intron	DEL	CCCA	-	-			2011-2301:2012-320-T	g.chr19:815461_815464delCCCA	uc002lpx.1	-						LPPR3_uc010dru.1_5'Flank|LPPR3_uc002lpw.1_Intron|LPPR3_uc002lpy.1_Intron	NM_024888	NP_079164
LPPR3	79948	broad.mit.edu	37	19	815467	815469	+	Intron	DEL	CGT	-	-	rs59458440		2011-2301:2012-320-T	g.chr19:815467_815469delCGT	uc002lpx.1	-						LPPR3_uc010dru.1_5'Flank|LPPR3_uc002lpw.1_Intron|LPPR3_uc002lpy.1_Intron	NM_024888	NP_079164
ZNF547	284306	broad.mit.edu	37	19	58010975	58010975	+	Intron	DEL	T	-	-	rs62126214		2011-2301:2012-320-T	g.chr19:58010975delT	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
RMND5A	64795	broad.mit.edu	37	2	87625949	87625949	+	Intron	DEL	A	-	-			2011-2301:2012-320-T	g.chr2:87625949delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87646427	87646428	+	Intron	INS	-	A	A			2011-2301:2012-320-T	g.chr2:87646427_87646428insA	uc002srs.3	+								
CUL3	8452	broad.mit.edu	37	2	225346735	225346736	+	Frame_Shift_Ins	INS	-	GAGG	GAGG			2011-2301:2012-320-T	g.chr2:225346735_225346736insGAGG	uc002vny.2	-	14	2286_2287	c.1902_1903insCCTC	c.(1900-1905)CTCGCCfs	p.L634fs	CUL3_uc010zls.1_Frame_Shift_Ins_p.L568fs|CUL3_uc010fwy.1_Frame_Shift_Ins_p.L640fs	NM_003590	NP_003581
AGAP1	116987	broad.mit.edu	37	2	236711445	236711446	+	Intron	INS	-	GTG	GTG			2011-2301:2012-320-T	g.chr2:236711445_236711446insGTG	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
CDK5RAP1	51654	broad.mit.edu	37	20	31961124	31961125	+	Intron	DEL	GT	-	-			2011-2301:2012-320-T	g.chr20:31961124_31961125delGT	uc010gek.2	-						CDK5RAP1_uc002wyy.2_Intron|CDK5RAP1_uc002wyz.2_Intron|CDK5RAP1_uc002wza.2_Intron|CDK5RAP1_uc010gel.2_Intron|CDK5RAP1_uc010gem.2_Intron|CDK5RAP1_uc002wzc.1_Intron|CDK5RAP1_uc002wzb.1_5'Flank	NM_016408	NP_057492
GMEB2	26205	broad.mit.edu	37	20	62240150	62240150	+	Intron	DEL	C	-	-			2011-2301:2012-320-T	g.chr20:62240150delC	uc002yfp.1	-						GMEB2_uc002yfq.1_Intron	NM_012384	NP_036516
PARVB	29780	broad.mit.edu	37	22	44550452	44550453	+	Intron	DEL	GT	-	-			2011-2301:2012-320-T	g.chr22:44550452_44550453delGT	uc003ben.2	+						PARVB_uc003bem.2_Intron|PARVB_uc010gzn.2_Intron|PARVB_uc003beo.2_Intron	NM_013327	NP_037459
RASA1	5921	broad.mit.edu	37	5	86669950	86669951	+	Intron	DEL	AT	-	-			2011-2301:2012-320-T	g.chr5:86669950_86669951delAT	uc003kiw.2	+						RASA1_uc010jav.2_Intron|RASA1_uc003kix.2_Intron|RASA1_uc011ctv.1_Intron|RASA1_uc011ctw.1_Intron|RASA1_uc010jaw.2_Intron	NM_002890	NP_002881
HLA-G	3135	broad.mit.edu	37	6	29865448	29865448	+	Intron	DEL	G	-	-	rs9278416		2011-2301:2012-320-T	g.chr6:29865448delG	uc011dmb.1	+						HCG2P7_uc003nof.2_5'Flank	NM_002127	NP_002118
CAPN11	11131	broad.mit.edu	37	6	44149352	44149353	+	Intron	INS	-	CA	CA	rs111596793		2011-2301:2012-320-T	g.chr6:44149352_44149353insCA	uc003owt.1	+						CAPN11_uc011dvn.1_Intron	NM_007058	NP_008989
RNGTT	8732	broad.mit.edu	37	6	89638989	89638989	+	Intron	DEL	A	-	-	rs111616936		2011-2301:2012-320-T	g.chr6:89638989delA	uc003pmr.2	-						RNGTT_uc003pms.2_Intron|RNGTT_uc011dzu.1_Intron|RNGTT_uc003pmt.2_Intron	NM_003800	NP_003791
ADAP1	11033	broad.mit.edu	37	7	945534	945534	+	Intron	DEL	A	-	-			2011-2301:2012-320-T	g.chr7:945534delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PLXNA4	91584	broad.mit.edu	37	7	132248906	132248906	+	Intron	DEL	C	-	-			2011-2301:2012-320-T	g.chr7:132248906delC	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
ADAM9	8754	broad.mit.edu	37	8	38902636	38902637	+	Intron	DEL	TG	-	-	rs138691481	by1000genomes	2011-2301:2012-320-T	g.chr8:38902636_38902637delTG	uc003xmr.2	+						ADAM9_uc011lcf.1_Intron|ADAM9_uc011lcg.1_Intron|ADAM9_uc010lwr.2_Intron	NM_003816	NP_003807
TSNARE1	203062	broad.mit.edu	37	8	143303904	143303905	+	Intron	INS	-	CCAC	CCAC	rs146878556;rs148483331	by1000genomes;by1000genomes	2011-2301:2012-320-T	g.chr8:143303904_143303905insCCAC	uc003ywk.2	-						TSNARE1_uc011lju.1_Intron|TSNARE1_uc003ywj.2_Intron	NM_145003	NP_659440
TTF1	7270	broad.mit.edu	37	9	135253720	135253723	+	Intron	DEL	AATT	-	-			2011-2301:2012-320-T	g.chr9:135253720_135253723delAATT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
COL5A1	1289	broad.mit.edu	37	9	137720743	137720744	+	Intron	DEL	CA	-	-			2011-2301:2012-320-T	g.chr9:137720743_137720744delCA	uc004cfe.2	+						uc004cff.2_Intron	NM_000093	NP_000084
SHOX	6473	broad.mit.edu	37	X	583863	583864	+	5'Flank	INS	-	AG	AG			2011-2301:2012-320-T	g.chrX:583863_583864insAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
ATE1	11101	broad.mit.edu	37	10	123597896	123597897	+	Intron	INS	-	AGA	AGA	rs146971192;rs66615114	by1000genomes	2011-2302:2012-314-T	g.chr10:123597896_123597897insAGA	uc001lfp.2	-						ATE1_uc001lfq.2_Intron|ATE1_uc010qtr.1_Intron|ATE1_uc010qts.1_Intron|ATE1_uc010qtt.1_Intron|ATE1_uc001lfr.2_Intron|ATE1_uc009xzu.2_Intron	NM_007041	NP_008972
LRRC27	80313	broad.mit.edu	37	10	134172656	134172658	+	Intron	DEL	AGC	-	-			2011-2302:2012-314-T	g.chr10:134172656_134172658delAGC	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
SPTB	6710	broad.mit.edu	37	14	65232524	65232525	+	Intron	DEL	GT	-	-	rs75760704		2011-2302:2012-314-T	g.chr14:65232524_65232525delGT	uc001xhr.2	-						SPTB_uc001xhs.2_Intron|SPTB_uc010aqi.2_Intron	NM_001024858	NP_001020029
TP53	7157	broad.mit.edu	37	17	7578206	7578207	+	Frame_Shift_Del	DEL	TA	-	-			2011-2302:2012-314-T	g.chr17:7578206_7578207delTA	uc002gim.2	-	6	836_837	c.642_643delTA	c.(640-645)CATAGTfs	p.H214fs	TP53_uc002gig.1_Frame_Shift_Del_p.H214fs|TP53_uc002gih.2_Frame_Shift_Del_p.H214fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.H82fs|TP53_uc010cng.1_Frame_Shift_Del_p.H82fs|TP53_uc002gii.1_Frame_Shift_Del_p.H82fs|TP53_uc010cnh.1_Frame_Shift_Del_p.H214fs|TP53_uc010cni.1_Frame_Shift_Del_p.H214fs|TP53_uc002gij.2_Frame_Shift_Del_p.H214fs|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Frame_Shift_Del_p.H121fs|TP53_uc002gio.2_Frame_Shift_Del_p.H82fs|TP53_uc010vug.1_Frame_Shift_Del_p.H175fs	NM_001126112	NP_001119584
MIER2	54531	broad.mit.edu	37	19	310545	310545	+	Intron	DEL	C	-	-			2011-2302:2012-314-T	g.chr19:310545delC	uc002lok.1	-							NM_017550	NP_060020
SNTG2	54221	broad.mit.edu	37	2	1282735	1282736	+	Intron	INS	-	GCGA	GCGA	rs74957399		2011-2302:2012-314-T	g.chr2:1282735_1282736insGCGA	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
PXDN	7837	broad.mit.edu	37	2	1708140	1708140	+	Intron	DEL	G	-	-			2011-2302:2012-314-T	g.chr2:1708140delG	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87643664	87643665	+	Intron	INS	-	A	A			2011-2302:2012-314-T	g.chr2:87643664_87643665insA	uc002srs.3	+								
AFF3	3899	broad.mit.edu	37	2	100218011	100218013	+	In_Frame_Del	DEL	GCT	-	-			2011-2302:2012-314-T	g.chr2:100218011_100218013delGCT	uc002tag.2	-	13	1491_1493	c.1255_1257delAGC	c.(1255-1257)AGCdel	p.S419del	AFF3_uc002taf.2_In_Frame_Del_p.S444del|AFF3_uc010fiq.1_In_Frame_Del_p.S419del|AFF3_uc010yvr.1_In_Frame_Del_p.S572del|AFF3_uc002tah.1_In_Frame_Del_p.S444del	NM_002285	NP_002276
MLPH	79083	broad.mit.edu	37	2	238453147	238453148	+	Intron	DEL	GG	-	-			2011-2302:2012-314-T	g.chr2:238453147_238453148delGG	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
PLCB1	23236	broad.mit.edu	37	20	8769226	8769226	+	Intron	DEL	A	-	-			2011-2302:2012-314-T	g.chr20:8769226delA	uc002wnb.2	+						PLCB1_uc002wna.2_Intron	NM_015192	NP_056007
GMEB2	26205	broad.mit.edu	37	20	62241106	62241106	+	Intron	DEL	C	-	-			2011-2302:2012-314-T	g.chr20:62241106delC	uc002yfp.1	-						GMEB2_uc002yfq.1_Intron	NM_012384	NP_036516
TMPRSS6	164656	broad.mit.edu	37	22	37494047	37494048	+	Intron	INS	-	G	G	rs68036712		2011-2302:2012-314-T	g.chr22:37494047_37494048insG	uc003aqs.1	-						TMPRSS6_uc003aqt.1_Intron|TMPRSS6_uc003aqu.2_Intron	NM_153609	NP_705837
PARVB	29780	broad.mit.edu	37	22	44550380	44550381	+	Intron	DEL	GT	-	-	rs35627062		2011-2302:2012-314-T	g.chr22:44550380_44550381delGT	uc003ben.2	+						PARVB_uc003bem.2_Intron|PARVB_uc010gzn.2_Intron|PARVB_uc003beo.2_Intron	NM_013327	NP_037459
GRK7	131890	broad.mit.edu	37	3	141529170	141529171	+	Intron	DEL	CT	-	-	rs73226680	by1000genomes	2011-2302:2012-314-T	g.chr3:141529170_141529171delCT	uc011bnd.1	+							NM_139209	NP_631948
PCGF3	10336	broad.mit.edu	37	4	708806	708807	+	Intron	INS	-	TG	TG			2011-2302:2012-314-T	g.chr4:708806_708807insTG	uc011bva.1	+						PCGF3_uc003gbc.1_Intron|PCGF3_uc003gbd.1_Intron|PCGF3_uc003gbe.2_Intron|PCGF3_uc010ibh.2_Intron	NM_006315	NP_006306
TERT	7015	broad.mit.edu	37	5	1272722	1272723	+	Intron	INS	-	CA	CA	rs10701000;rs66856825		2011-2302:2012-314-T	g.chr5:1272722_1272723insCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
TFAP2A	7020	broad.mit.edu	37	6	10415439	10415441	+	5'UTR	DEL	GAG	-	-			2011-2302:2012-314-T	g.chr6:10415439_10415441delGAG	uc003myr.2	-	1					TFAP2A_uc003myq.2_5'Flank|TFAP2A_uc003mys.2_RNA|TFAP2A_uc011dih.1_5'UTR|TFAP2A_uc003myt.2_Intron|TFAP2A_uc003myu.1_5'UTR|TFAP2A_uc003myv.1_5'Flank|TFAP2A_uc011dii.1_Intron|uc003myw.2_Intron|uc003myx.2_Intron|uc003myy.1_Intron	NM_003220	NP_003211
SMOC2	64094	broad.mit.edu	37	6	169000082	169000083	+	Intron	DEL	AC	-	-			2011-2302:2012-314-T	g.chr6:169000082_169000083delAC	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
ADAP1	11033	broad.mit.edu	37	7	945894	945894	+	Intron	DEL	A	-	-			2011-2302:2012-314-T	g.chr7:945894delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
MAD1L1	8379	broad.mit.edu	37	7	2035905	2035906	+	Intron	INS	-	C	C	rs68072290		2011-2302:2012-314-T	g.chr7:2035905_2035906insC	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
ERICH1	157697	broad.mit.edu	37	8	625156	625157	+	Intron	INS	-	G	G			2011-2302:2012-314-T	g.chr8:625156_625157insG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
OLFM1	10439	broad.mit.edu	37	9	137983597	137983598	+	Intron	INS	-	CA	CA			2011-2302:2012-314-T	g.chr9:137983597_137983598insCA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
EXD3	54932	broad.mit.edu	37	9	140249941	140249942	+	Intron	INS	-	A	A			2011-2302:2012-314-T	g.chr9:140249941_140249942insA	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
GUCA2A	2980	broad.mit.edu	37	1	42632473	42632474	+	5'Flank	INS	-	GT	GT	rs140638678	by1000genomes	2011-2303:2012-1323-T	g.chr1:42632473_42632474insGT	uc001chd.1	-							NM_033553	NP_291031
BTBD8	284697	broad.mit.edu	37	1	92592063	92592064	+	Intron	INS	-	G	G	rs148177634;rs71311977	by1000genomes	2011-2303:2012-1323-T	g.chr1:92592063_92592064insG	uc001doo.2	+						BTBD8_uc010otc.1_Intron	NM_183242	NP_899065
BTBD8	284697	broad.mit.edu	37	1	92592064	92592065	+	Intron	INS	-	A	A	rs71311977		2011-2303:2012-1323-T	g.chr1:92592064_92592065insA	uc001doo.2	+						BTBD8_uc010otc.1_Intron	NM_183242	NP_899065
C10orf81	79949	broad.mit.edu	37	10	115541048	115541048	+	3'UTR	DEL	A	-	-			2011-2303:2012-1323-T	g.chr10:115541048delA	uc009xyc.1	+	13					C10orf81_uc001lar.1_3'UTR|C10orf81_uc001las.1_3'UTR|C10orf81_uc001lau.1_3'UTR|C10orf81_uc001lav.2_5'Flank		
C10orf81	79949	broad.mit.edu	37	10	115541059	115541060	+	3'UTR	INS	-	C	C	rs66983035		2011-2303:2012-1323-T	g.chr10:115541059_115541060insC	uc009xyc.1	+	13					C10orf81_uc001lar.1_3'UTR|C10orf81_uc001las.1_3'UTR|C10orf81_uc001lau.1_3'UTR|C10orf81_uc001lav.2_5'Flank		
C10orf81	79949	broad.mit.edu	37	10	115541171	115541172	+	3'UTR	DEL	CT	-	-			2011-2303:2012-1323-T	g.chr10:115541171_115541172delCT	uc009xyc.1	+	13					C10orf81_uc001lar.1_3'UTR|C10orf81_uc001las.1_3'UTR|C10orf81_uc001lau.1_3'UTR|C10orf81_uc001lav.2_5'Flank		
TPCN2	219931	broad.mit.edu	37	11	68838579	68838580	+	Intron	INS	-	TG	TG	rs66520477		2011-2303:2012-1323-T	g.chr11:68838579_68838580insTG	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_5'Flank	NM_139075	NP_620714
TPCN2	219931	broad.mit.edu	37	11	68838582	68838582	+	Intron	DEL	A	-	-			2011-2303:2012-1323-T	g.chr11:68838582delA	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_5'Flank	NM_139075	NP_620714
RIMBP2	23504	broad.mit.edu	37	12	131068897	131068898	+	Intron	INS	-	CT	CT			2011-2303:2012-1323-T	g.chr12:131068897_131068898insCT	uc001uim.2	-								
CUL4A	8451	broad.mit.edu	37	13	113886501	113886501	+	Intron	DEL	C	-	-	rs66864899		2011-2303:2012-1323-T	g.chr13:113886501delC	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc001vtl.1_5'Flank	NM_001008895	NP_001008895
HYDIN	54768	broad.mit.edu	37	16	71220808	71220808	+	5'UTR	DEL	T	-	-			2011-2303:2012-1323-T	g.chr16:71220808delT	uc002ezr.2	-	2					HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_5'UTR|HYDIN_uc010vmc.1_Frame_Shift_Del_p.K14fs|HYDIN_uc010vmd.1_Frame_Shift_Del_p.K24fs|HYDIN_uc002ezw.3_Frame_Shift_Del_p.K14fs	NM_032821	NP_116210
C17orf76	388341	broad.mit.edu	37	17	16359634	16359636	+	Intron	DEL	AGA	-	-	rs62076299		2011-2303:2012-1323-T	g.chr17:16359634_16359636delAGA	uc010cph.1	-						C17orf76_uc002gqh.2_Intron|NCRNA00188_uc010vwl.1_Intron|NCRNA00188_uc010vwm.1_Intron|NCRNA00188_uc010vwn.1_Intron|NCRNA00188_uc010cpe.2_Intron|NCRNA00188_uc010vwo.1_Intron|NCRNA00188_uc010vwp.1_Intron	NM_001113567	NP_001107039
BCL2	596	broad.mit.edu	37	18	60866177	60866178	+	Intron	INS	-	AG	AG			2011-2303:2012-1323-T	g.chr18:60866177_60866178insAG	uc002lit.1	-						BCL2_uc002liu.1_Intron	NM_000633	NP_000624
RMND5A	64795	broad.mit.edu	37	2	87623883	87623883	+	Intron	DEL	A	-	-			2011-2303:2012-1323-T	g.chr2:87623883delA	uc002srs.3	+								
GPR35	2859	broad.mit.edu	37	2	241562708	241562708	+	Intron	DEL	T	-	-			2011-2303:2012-1323-T	g.chr2:241562708delT	uc010fzh.1	+						GPR35_uc010fzi.1_Intron	NM_005301	NP_005292
MLC1	23209	broad.mit.edu	37	22	50506156	50506156	+	Intron	DEL	A	-	-	rs67549389		2011-2303:2012-1323-T	g.chr22:50506156delA	uc003bjg.1	-						MLC1_uc011arl.1_Intron|MLC1_uc003bjh.1_Intron|MLC1_uc011arm.1_Intron|MLC1_uc011arn.1_Intron|MLC1_uc011aro.1_Intron	NM_139202	NP_631941
CASR	846	broad.mit.edu	37	3	121902343	121902346	+	5'Flank	DEL	AAAC	-	-	rs10576069		2011-2303:2012-1323-T	g.chr3:121902343_121902346delAAAC	uc003eev.3	+						CASR_uc003eew.3_5'Flank	NM_000388	NP_000379
RGS12	6002	broad.mit.edu	37	4	3364474	3364475	+	Intron	DEL	GT	-	-	rs113436382		2011-2303:2012-1323-T	g.chr4:3364474_3364475delGT	uc003ggw.2	+						RGS12_uc003ggu.2_Intron|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_Intron|RGS12_uc003ggv.2_Intron|RGS12_uc003ggy.1_Intron	NM_198229	NP_937872
CEP72	55722	broad.mit.edu	37	5	648652	648653	+	Intron	INS	-	G	G	rs71781429		2011-2303:2012-1323-T	g.chr5:648652_648653insG	uc003jbf.2	+							NM_018140	NP_060610
HLA-G	3135	broad.mit.edu	37	6	29893550	29893553	+	Intron	DEL	AAAC	-	-	rs145760005;rs1611433		2011-2303:2012-1323-T	g.chr6:29893550_29893553delAAAC	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_5'Flank	NM_002127	NP_002118
HLA-B	3106	broad.mit.edu	37	6	31323776	31323777	+	Intron	INS	-	C	C	rs140602404;rs5875313	by1000genomes	2011-2303:2012-1323-T	g.chr6:31323776_31323777insC	uc003nth.2	-						HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Intron|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_RNA|HLA-B_uc010jso.2_3'UTR	NM_005514	NP_005505
SYNE1	23345	broad.mit.edu	37	6	152680765	152680766	+	Intron	DEL	GT	-	-	rs112850733		2011-2303:2012-1323-T	g.chr6:152680765_152680766delGT	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
PRKAR1B	5575	broad.mit.edu	37	7	628385	628386	+	Intron	INS	-	CAC	CAC			2011-2303:2012-1323-T	g.chr7:628385_628386insCAC	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
BRAF	673	broad.mit.edu	37	7	140434620	140434621	+	Intron	INS	-	AAAG	AAAG	rs145368076	by1000genomes	2011-2303:2012-1323-T	g.chr7:140434620_140434621insAAAG	uc003vwc.3	-							NM_004333	NP_004324
PTPRN2	5799	broad.mit.edu	37	7	158112342	158112343	+	Intron	DEL	CA	-	-	rs5888750		2011-2303:2012-1323-T	g.chr7:158112342_158112343delCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158317053	158317055	+	Intron	DEL	TCA	-	-	rs10551720;rs113684811	by1000genomes	2011-2303:2012-1323-T	g.chr7:158317053_158317055delTCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TOP1MT	116447	broad.mit.edu	37	8	144404078	144404081	+	Intron	DEL	ACAG	-	-			2011-2303:2012-1323-T	g.chr8:144404078_144404081delACAG	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144404103	144404104	+	Intron	DEL	CA	-	-			2011-2303:2012-1323-T	g.chr8:144404103_144404104delCA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
POMT1	10585	broad.mit.edu	37	9	134391171	134391174	+	Intron	DEL	GTAA	-	-	rs113878457;rs150484413;rs143650925	by1000genomes	2011-2303:2012-1323-T	g.chr9:134391171_134391174delGTAA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391317	134391317	+	Intron	DEL	G	-	-	rs75256542		2011-2303:2012-1323-T	g.chr9:134391317delG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391321	134391321	+	Intron	DEL	G	-	-			2011-2303:2012-1323-T	g.chr9:134391321delG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
TSC1	7248	broad.mit.edu	37	9	135773001	135773001	+	Intron	DEL	A	-	-	rs33939817		2011-2303:2012-1323-T	g.chr9:135773001delA	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359
LOC200030	200030	broad.mit.edu	37	1	148004891	148004891	+	Intron	DEL	A	-	-			2011-2304:2012-319-T	g.chr1:148004891delA	uc001eqf.2	-						LOC200030_uc010ozz.1_Intron|LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqq.2_Intron	NM_017940	NP_060410
LHPP	64077	broad.mit.edu	37	10	126226788	126226788	+	Intron	DEL	C	-	-	rs66497940		2011-2304:2012-319-T	g.chr10:126226788delC	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron	NM_022126	NP_071409
CALY	50632	broad.mit.edu	37	10	135147527	135147527	+	Intron	DEL	G	-	-			2011-2304:2012-319-T	g.chr10:135147527delG	uc001lmo.2	-							NM_015722	NP_056537
ACACB	32	broad.mit.edu	37	12	109685344	109685345	+	Intron	INS	-	A	A	rs144291284	by1000genomes	2011-2304:2012-319-T	g.chr12:109685344_109685345insA	uc001tob.2	+						ACACB_uc001toc.2_Intron|ACACB_uc010sxl.1_Intron|ACACB_uc001tod.2_Intron|ACACB_uc010sxm.1_Intron	NM_001093	NP_001084
LMF1	64788	broad.mit.edu	37	16	1011225	1011226	+	Intron	DEL	AC	-	-			2011-2304:2012-319-T	g.chr16:1011225_1011226delAC	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
RFX2	5990	broad.mit.edu	37	19	6070210	6070210	+	Intron	DEL	T	-	-			2011-2304:2012-319-T	g.chr19:6070210delT	uc002meb.2	-						RFX2_uc002mec.2_Intron|RFX2_uc010xiy.1_Intron	NM_000635	NP_000626
BCL11A	53335	broad.mit.edu	37	2	60694451	60694453	+	Intron	DEL	TGG	-	-			2011-2304:2012-319-T	g.chr2:60694451_60694453delTGG	uc002sae.1	-						BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Intron|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044
COL18A1	80781	broad.mit.edu	37	21	46903911	46903912	+	Intron	DEL	CA	-	-	rs72371129		2011-2304:2012-319-T	g.chr21:46903911_46903912delCA	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron	NM_130444	NP_569711
MPPED1	758	broad.mit.edu	37	22	43828768	43828768	+	Intron	DEL	A	-	-			2011-2304:2012-319-T	g.chr22:43828768delA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
PRR5	55615	broad.mit.edu	37	22	45081456	45081457	+	Intron	INS	-	C	C			2011-2304:2012-319-T	g.chr22:45081456_45081457insC	uc010gzt.1	+						PRR5_uc003bew.1_Intron|PRR5_uc003bex.1_Intron|PRR5_uc010gzu.1_Intron|PRR5_uc003bey.1_Intron|PRR5_uc003bez.1_Intron	NM_001017530	NP_001017530
LPCAT1	79888	broad.mit.edu	37	5	1464801	1464802	+	Intron	DEL	AC	-	-			2011-2304:2012-319-T	g.chr5:1464801_1464802delAC	uc003jcm.2	-						LPCAT1_uc003jcl.2_Intron	NM_024830	NP_079106
TRIO	7204	broad.mit.edu	37	5	14403490	14403491	+	Intron	INS	-	CTT	CTT			2011-2304:2012-319-T	g.chr5:14403490_14403491insCTT	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
AOAH	313	broad.mit.edu	37	7	36555083	36555083	+	Intron	DEL	C	-	-			2011-2304:2012-319-T	g.chr7:36555083delC	uc003tfh.3	-						AOAH_uc010kxf.2_Intron|AOAH_uc011kba.1_Intron	NM_001637	NP_001628
RIMS2	9699	broad.mit.edu	37	8	104922519	104922520	+	Intron	INS	-	T	T	rs112118632		2011-2304:2012-319-T	g.chr8:104922519_104922520insT	uc003yls.2	+						RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Intron|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron|RIMS2_uc003ylt.2_5'Flank	NM_014677	NP_055492
SHOX	6473	broad.mit.edu	37	X	583426	583427	+	5'Flank	DEL	AG	-	-			2011-2304:2012-319-T	g.chrX:583426_583427delAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
LGR6	59352	broad.mit.edu	37	1	202174498	202174509	+	Intron	DEL	ACACACACACCT	-	-	rs150017503;rs141873830;rs138471820		2011-2305:2012-313-T	g.chr1:202174498_202174509delACACACACACCT	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174525	202174526	+	Intron	INS	-	AC	AC			2011-2305:2012-313-T	g.chr1:202174525_202174526insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
IDI1	3422	broad.mit.edu	37	10	1092917	1092917	+	Intron	DEL	T	-	-			2011-2305:2012-313-T	g.chr10:1092917delT	uc001iga.2	-						IDI1_uc001ifz.2_5'Flank|IDI1_uc001igb.2_Intron|IDI1_uc001igc.2_Intron|uc001igd.2_5'Flank	NM_004508	NP_004499
KNDC1	85442	broad.mit.edu	37	10	135022782	135022783	+	Intron	INS	-	GTGTG	GTGTG	rs142306215;rs71951226	by1000genomes	2011-2305:2012-313-T	g.chr10:135022782_135022783insGTGTG	uc001llz.1	+							NM_152643	NP_689856
BRSK2	9024	broad.mit.edu	37	11	1430010	1430013	+	Intron	DEL	TGGC	-	-	rs112616926;rs56958929;rs144527251		2011-2305:2012-313-T	g.chr11:1430010_1430013delTGGC	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron|BRSK2_uc001ltm.2_5'Flank	NM_003957	NP_003948
SLC22A12	116085	broad.mit.edu	37	11	64363763	64363765	+	Intron	DEL	GCT	-	-	rs61884371		2011-2305:2012-313-T	g.chr11:64363763_64363765delGCT	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
SLC22A12	116085	broad.mit.edu	37	11	64363776	64363779	+	Intron	DEL	TTGA	-	-			2011-2305:2012-313-T	g.chr11:64363776_64363779delTTGA	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
SLC22A12	116085	broad.mit.edu	37	11	64363787	64363789	+	Intron	DEL	GTT	-	-			2011-2305:2012-313-T	g.chr11:64363787_64363789delGTT	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
TFDP1	7027	broad.mit.edu	37	13	114267941	114267942	+	Intron	INS	-	GT	GT	rs149372254;rs66526475	by1000genomes	2011-2305:2012-313-T	g.chr13:114267941_114267942insGT	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
BCAR1	9564	broad.mit.edu	37	16	75267995	75267996	+	Intron	DEL	AC	-	-	rs112392504		2011-2305:2012-313-T	g.chr16:75267995_75267996delAC	uc002fdv.2	-						BCAR1_uc002fdt.2_Intron|BCAR1_uc002fdu.2_Intron|BCAR1_uc010cgu.2_Intron|BCAR1_uc010vna.1_Intron|BCAR1_uc010vnb.1_Intron|BCAR1_uc002fdw.2_Intron|BCAR1_uc010vnc.1_Intron|BCAR1_uc010vnd.1_Intron|BCAR1_uc002fdx.2_Intron	NM_014567	NP_055382
KLHDC4	54758	broad.mit.edu	37	16	87772628	87772631	+	Intron	DEL	CATC	-	-			2011-2305:2012-313-T	g.chr16:87772628_87772631delCATC	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
RPH3AL	9501	broad.mit.edu	37	17	137106	137107	+	Intron	INS	-	CT	CT			2011-2305:2012-313-T	g.chr17:137106_137107insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	912447	912447	+	Intron	DEL	A	-	-			2011-2305:2012-313-T	g.chr17:912447delA	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010vqf.1_Intron|ABR_uc010vqg.1_Intron|ABR_uc002fsg.2_Intron|ABR_uc002fsf.2_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1021854	1021855	+	Intron	INS	-	C	C	rs71358535		2011-2305:2012-313-T	g.chr17:1021854_1021855insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
FOXK2	3607	broad.mit.edu	37	17	80544180	80544180	+	Intron	DEL	C	-	-	rs66791901		2011-2305:2012-313-T	g.chr17:80544180delC	uc002kfn.2	+						FOXK2_uc002kfm.1_Intron|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505
BCL2	596	broad.mit.edu	37	18	60885864	60885865	+	Intron	INS	-	TCC	TCC			2011-2305:2012-313-T	g.chr18:60885864_60885865insTCC	uc002lit.1	-						BCL2_uc002liu.1_Intron	NM_000633	NP_000624
INSR	3643	broad.mit.edu	37	19	7153059	7153060	+	Intron	INS	-	A	A			2011-2305:2012-313-T	g.chr19:7153059_7153060insA	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
INSR	3643	broad.mit.edu	37	19	7153070	7153070	+	Intron	DEL	A	-	-			2011-2305:2012-313-T	g.chr19:7153070delA	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
UNC13A	23025	broad.mit.edu	37	19	17740723	17740723	+	Intron	DEL	C	-	-			2011-2305:2012-313-T	g.chr19:17740723delC	uc002nhd.2	-							NM_001080421	NP_001073890
UNC13A	23025	broad.mit.edu	37	19	17740727	17740731	+	Intron	DEL	AACCC	-	-	rs77536659;rs143960262	by1000genomes	2011-2305:2012-313-T	g.chr19:17740727_17740731delAACCC	uc002nhd.2	-							NM_001080421	NP_001073890
PXDN	7837	broad.mit.edu	37	2	1707383	1707383	+	Intron	DEL	A	-	-	rs78526478		2011-2305:2012-313-T	g.chr2:1707383delA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
TSSC1	7260	broad.mit.edu	37	2	3203751	3203751	+	Intron	DEL	T	-	-			2011-2305:2012-313-T	g.chr2:3203751delT	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
RAB3GAP1	22930	broad.mit.edu	37	2	135875087	135875092	+	Intron	DEL	CTTCTG	-	-	rs62170226	by1000genomes	2011-2305:2012-313-T	g.chr2:135875087_135875092delCTTCTG	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
AGXT	189	broad.mit.edu	37	2	241811740	241811742	+	Intron	DEL	GGA	-	-	rs72418025;rs4991354	by1000genomes	2011-2305:2012-313-T	g.chr2:241811740_241811742delGGA	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
BMP7	655	broad.mit.edu	37	20	55794237	55794240	+	Intron	DEL	TGTT	-	-			2011-2305:2012-313-T	g.chr20:55794237_55794240delTGTT	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
BMP7	655	broad.mit.edu	37	20	55794255	55794257	+	Intron	DEL	TGG	-	-			2011-2305:2012-313-T	g.chr20:55794255_55794257delTGG	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
OPRL1	4987	broad.mit.edu	37	20	62728229	62728231	+	Intron	DEL	CAT	-	-	rs144823897		2011-2305:2012-313-T	g.chr20:62728229_62728231delCAT	uc002yic.2	+						OPRL1_uc002yid.2_Intron|OPRL1_uc002yif.3_Intron	NM_182647	NP_872588
DSCAM	1826	broad.mit.edu	37	21	41658726	41658727	+	Intron	DEL	TG	-	-			2011-2305:2012-313-T	g.chr21:41658726_41658727delTG	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
DSCAM	1826	broad.mit.edu	37	21	41658728	41658729	+	Intron	INS	-	A	A			2011-2305:2012-313-T	g.chr21:41658728_41658729insA	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
DSCAM	1826	broad.mit.edu	37	21	41658732	41658733	+	Intron	INS	-	GTG	GTG			2011-2305:2012-313-T	g.chr21:41658732_41658733insGTG	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
TFRC	7037	broad.mit.edu	37	3	195792289	195792291	+	Intron	DEL	GGG	-	-	rs67752813		2011-2305:2012-313-T	g.chr3:195792289_195792291delGGG	uc003fvz.3	-						TFRC_uc003fwa.3_Intron|TFRC_uc010hzy.2_Intron|TFRC_uc011btr.1_Intron	NM_003234	NP_003225
FAM53A	152877	broad.mit.edu	37	4	1651748	1651751	+	Intron	DEL	TGAC	-	-			2011-2305:2012-313-T	g.chr4:1651748_1651751delTGAC	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
CEP72	55722	broad.mit.edu	37	5	650334	650335	+	Intron	DEL	TG	-	-			2011-2305:2012-313-T	g.chr5:650334_650335delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650518	650519	+	Intron	INS	-	G	G			2011-2305:2012-313-T	g.chr5:650518_650519insG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1070705	1070705	+	Intron	DEL	G	-	-			2011-2305:2012-313-T	g.chr5:1070705delG	uc003jbu.2	-							NM_006598	NP_006589
MEF2C	4208	broad.mit.edu	37	5	88120079	88120080	+	Intron	INS	-	CT	CT	rs138032942;rs145284455	by1000genomes	2011-2305:2012-313-T	g.chr5:88120079_88120080insCT	uc003kjj.2	-						MEF2C_uc003kji.2_5'Flank|MEF2C_uc003kjk.2_Intron|MEF2C_uc003kjm.2_Intron|MEF2C_uc003kjl.2_Intron	NM_002397	NP_002388
ADAMTS2	9509	broad.mit.edu	37	5	178562060	178562072	+	Intron	DEL	CCAGCTCCCGGGT	-	-			2011-2305:2012-313-T	g.chr5:178562060_178562072delCCAGCTCCCGGGT	uc003mjw.2	-							NM_014244	NP_055059
ADAMTS2	9509	broad.mit.edu	37	5	178562072	178562073	+	Intron	INS	-	CCAGCTC	CCAGCTC			2011-2305:2012-313-T	g.chr5:178562072_178562073insCCAGCTC	uc003mjw.2	-							NM_014244	NP_055059
SMOC2	64094	broad.mit.edu	37	6	168990356	168990357	+	Intron	INS	-	C	C			2011-2305:2012-313-T	g.chr6:168990356_168990357insC	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
ADAP1	11033	broad.mit.edu	37	7	982216	982217	+	Intron	DEL	GA	-	-			2011-2305:2012-313-T	g.chr7:982216_982217delGA	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	158055367	158055368	+	Intron	DEL	CA	-	-			2011-2305:2012-313-T	g.chr7:158055367_158055368delCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ERICH1	157697	broad.mit.edu	37	8	625815	625815	+	Intron	DEL	G	-	-			2011-2305:2012-313-T	g.chr8:625815delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
TOP1MT	116447	broad.mit.edu	37	8	144404078	144404081	+	Intron	DEL	ACAG	-	-			2011-2305:2012-313-T	g.chr8:144404078_144404081delACAG	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
RALGDS	5900	broad.mit.edu	37	9	135999262	135999263	+	5'Flank	DEL	CA	-	-			2011-2305:2012-313-T	g.chr9:135999262_135999263delCA	uc004cco.2	-						RALGDS_uc004ccp.2_5'Flank|RALGDS_uc004ccq.2_5'Flank|RALGDS_uc004ccr.2_Intron|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Intron|RALGDS_uc011mcw.1_Intron	NM_006266	NP_006257
SHOX	6473	broad.mit.edu	37	X	583543	583544	+	5'Flank	INS	-	GAG	GAG			2011-2305:2012-313-T	g.chrX:583543_583544insGAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SHOX	6473	broad.mit.edu	37	X	583549	583550	+	5'Flank	DEL	AG	-	-			2011-2305:2012-313-T	g.chrX:583549_583550delAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SHOX	6473	broad.mit.edu	37	X	583912	583913	+	5'Flank	INS	-	G	G			2011-2305:2012-313-T	g.chrX:583912_583913insG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
PRDM16	63976	broad.mit.edu	37	1	3030991	3030992	+	Intron	INS	-	G	G	rs142220406;rs150992402	by1000genomes	2011-2306:2012-1324-T	g.chr1:3030991_3030992insG	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
ASH1L	55870	broad.mit.edu	37	1	155330238	155330238	+	Intron	DEL	T	-	-			2011-2306:2012-1324-T	g.chr1:155330238delT	uc009wqq.2	-						RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Intron	NM_018489	NP_060959
USH2A	7399	broad.mit.edu	37	1	215931923	215931923	+	Intron	DEL	T	-	-			2011-2306:2012-1324-T	g.chr1:215931923delT	uc001hku.1	-							NM_206933	NP_996816
INPP5A	3632	broad.mit.edu	37	10	134577161	134577162	+	Intron	DEL	AT	-	-	rs10534980;rs76083849		2011-2306:2012-1324-T	g.chr10:134577161_134577162delAT	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
TSPAN9	10867	broad.mit.edu	37	12	3307852	3307858	+	Intron	DEL	CACAGGT	-	-	rs72071043		2011-2306:2012-1324-T	g.chr12:3307852_3307858delCACAGGT	uc001qlp.2	+							NM_006675	NP_006666
TP53	7157	broad.mit.edu	37	17	7579311	7579311	+	Splice_Site	DEL	C	-	-			2011-2306:2012-1324-T	g.chr17:7579311delC	uc002gim.2	-	4	569	c.375_splice	c.e4+1	p.T125_splice	TP53_uc002gig.1_Splice_Site_p.T125_splice|TP53_uc002gih.2_Splice_Site_p.T125_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Splice_Site_p.T125_splice|TP53_uc010cni.1_Splice_Site_p.T125_splice|TP53_uc002gij.2_Splice_Site_p.T125_splice|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Splice_Site_p.T86_splice	NM_001126112	NP_001119584
NLRP4	147945	broad.mit.edu	37	19	56348142	56348143	+	5'UTR	INS	-	TT	TT	rs144237697;rs35397971	by1000genomes	2011-2306:2012-1324-T	g.chr19:56348142_56348143insTT	uc002qmd.3	+	1					NLRP11_uc010ygf.1_5'Flank|NLRP11_uc002qmc.2_5'Flank|NLRP11_uc010ete.1_5'Flank	NM_134444	NP_604393
CNNM4	26504	broad.mit.edu	37	2	97467461	97467462	+	Intron	INS	-	AG	AG	rs140663291	by1000genomes	2011-2306:2012-1324-T	g.chr2:97467461_97467462insAG	uc002swx.2	+						CNNM4_uc010yuy.1_Intron	NM_020184	NP_064569
CHST13	166012	broad.mit.edu	37	3	126258832	126258833	+	Intron	DEL	AC	-	-			2011-2306:2012-1324-T	g.chr3:126258832_126258833delAC	uc003eja.2	+							NM_152889	NP_690849
LOC200030	200030	broad.mit.edu	37	1	148004891	148004891	+	Intron	DEL	A	-	-			2011-2307:2012-1335-T	g.chr1:148004891delA	uc001eqf.2	-						LOC200030_uc010ozz.1_Intron|LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqq.2_Intron	NM_017940	NP_060410
ABL2	27	broad.mit.edu	37	1	179091051	179091054	+	Intron	DEL	TTTT	-	-	rs35474314		2011-2307:2012-1335-T	g.chr1:179091051_179091054delTTTT	uc001gmj.3	-						ABL2_uc010pnf.1_Intron|ABL2_uc010png.1_Intron|ABL2_uc010pnh.1_Intron|ABL2_uc009wxe.2_Intron|ABL2_uc001gmg.3_Intron|ABL2_uc001gmi.3_Intron|ABL2_uc001gmh.3_Intron|ABL2_uc010pne.1_Intron|ABL2_uc009wxf.1_Intron|ABL2_uc001gmk.2_Intron	NM_007314	NP_009298
FOXI2	399823	broad.mit.edu	37	10	129538360	129538361	+	3'UTR	INS	-	GA	GA	rs11018304	by1000genomes	2011-2307:2012-1335-T	g.chr10:129538360_129538361insGA	uc009yas.2	+	2						NM_207426	NP_997309
ODF3	113746	broad.mit.edu	37	11	196482	196483	+	5'Flank	INS	-	A	A	rs113228320		2011-2307:2012-1335-T	g.chr11:196482_196483insA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
ODF3	113746	broad.mit.edu	37	11	196489	196490	+	5'Flank	INS	-	T	T	rs113039770		2011-2307:2012-1335-T	g.chr11:196489_196490insT	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
ODF3	113746	broad.mit.edu	37	11	196494	196495	+	5'Flank	INS	-	G	G			2011-2307:2012-1335-T	g.chr11:196494_196495insG	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
PCCA	5095	broad.mit.edu	37	13	101104156	101104158	+	Intron	DEL	CTC	-	-	rs138605680		2011-2307:2012-1335-T	g.chr13:101104156_101104158delCTC	uc001voo.2	+						PCCA_uc010aga.2_Intron|PCCA_uc010tiz.1_Intron|PCCA_uc001vop.2_Intron	NM_000282	NP_000273
SERPINA12	145264	broad.mit.edu	37	14	94986268	94986269	+	5'Flank	INS	-	TGC	TGC			2011-2307:2012-1335-T	g.chr14:94986268_94986269insTGC	uc001ydj.2	-							NM_173850	NP_776249
INF2	64423	broad.mit.edu	37	14	105187090	105187091	+	Intron	INS	-	C	C			2011-2307:2012-1335-T	g.chr14:105187090_105187091insC	uc010tyi.1	+							NM_022489	NP_071934
KLHDC4	54758	broad.mit.edu	37	16	87772516	87772519	+	Intron	DEL	CCAC	-	-			2011-2307:2012-1335-T	g.chr16:87772516_87772519delCCAC	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
ABR	29	broad.mit.edu	37	17	1021854	1021855	+	Intron	INS	-	C	C	rs71358535		2011-2307:2012-1335-T	g.chr17:1021854_1021855insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
NTN1	9423	broad.mit.edu	37	17	9132344	9132345	+	Intron	DEL	TG	-	-	rs10551762		2011-2307:2012-1335-T	g.chr17:9132344_9132345delTG	uc002glw.3	+							NM_004822	NP_004813
RAB40B	10966	broad.mit.edu	37	17	80629981	80629981	+	Intron	DEL	T	-	-	rs11323271		2011-2307:2012-1335-T	g.chr17:80629981delT	uc002kft.2	-						RAB40B_uc002kfs.2_Intron	NM_006822	NP_006813
NOTCH3	4854	broad.mit.edu	37	19	15273600	15273605	+	Intron	DEL	GTGTGC	-	-	rs4019573;rs757473	by1000genomes	2011-2307:2012-1335-T	g.chr19:15273600_15273605delGTGTGC	uc002nan.2	-							NM_000435	NP_000426
PXDN	7837	broad.mit.edu	37	2	1707823	1707824	+	Intron	INS	-	G	G			2011-2307:2012-1335-T	g.chr2:1707823_1707824insG	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
MYT1L	23040	broad.mit.edu	37	2	2184370	2184371	+	Intron	INS	-	TG	TG	rs146382891	by1000genomes	2011-2307:2012-1335-T	g.chr2:2184370_2184371insTG	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
MLPH	79083	broad.mit.edu	37	2	238453808	238453809	+	Intron	INS	-	A	A	rs141663253	by1000genomes	2011-2307:2012-1335-T	g.chr2:238453808_238453809insA	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
MLPH	79083	broad.mit.edu	37	2	238453827	238453827	+	Intron	DEL	A	-	-	rs36129181		2011-2307:2012-1335-T	g.chr2:238453827delA	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
AGPAT3	56894	broad.mit.edu	37	21	45337928	45337928	+	Intron	DEL	G	-	-			2011-2307:2012-1335-T	g.chr21:45337928delG	uc002zdv.2	+							NM_020132	NP_064517
FAM53A	152877	broad.mit.edu	37	4	1668111	1668112	+	Intron	DEL	CT	-	-			2011-2307:2012-1335-T	g.chr4:1668111_1668112delCT	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
NKD2	85409	broad.mit.edu	37	5	1026147	1026148	+	Intron	INS	-	A	A	rs66703602		2011-2307:2012-1335-T	g.chr5:1026147_1026148insA	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
TRIO	7204	broad.mit.edu	37	5	14402666	14402666	+	Intron	DEL	G	-	-			2011-2307:2012-1335-T	g.chr5:14402666delG	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
RIOK2	55781	broad.mit.edu	37	5	96514501	96514501	+	Intron	DEL	T	-	-			2011-2307:2012-1335-T	g.chr5:96514501delT	uc003kmz.2	-						RIOK2_uc003kna.3_Intron	NM_018343	NP_060813
RNF130	55819	broad.mit.edu	37	5	179442562	179442563	+	Intron	INS	-	A	A			2011-2307:2012-1335-T	g.chr5:179442562_179442563insA	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
RNF130	55819	broad.mit.edu	37	5	179442571	179442571	+	Intron	DEL	G	-	-			2011-2307:2012-1335-T	g.chr5:179442571delG	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
PSMB1	5689	broad.mit.edu	37	6	170804652	170804654	+	Intron	DEL	GAG	-	-			2011-2307:2012-1335-T	g.chr6:170804652_170804654delGAG	uc003qxq.2	-							NM_002793	
ADAP1	11033	broad.mit.edu	37	7	945758	945758	+	Intron	DEL	G	-	-			2011-2307:2012-1335-T	g.chr7:945758delG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982890	982891	+	Intron	DEL	GG	-	-			2011-2307:2012-1335-T	g.chr7:982890_982891delGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982936	982938	+	Intron	DEL	GAC	-	-	rs139903029	by1000genomes	2011-2307:2012-1335-T	g.chr7:982936_982938delGAC	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
SDK1	221935	broad.mit.edu	37	7	4082946	4082947	+	Intron	INS	-	GT	GT	rs138118628;rs72333695	by1000genomes	2011-2307:2012-1335-T	g.chr7:4082946_4082947insGT	uc003smx.2	+						SDK1_uc010kso.2_Intron	NM_152744	NP_689957
AOAH	313	broad.mit.edu	37	7	36555028	36555029	+	Intron	INS	-	A	A			2011-2307:2012-1335-T	g.chr7:36555028_36555029insA	uc003tfh.3	-						AOAH_uc010kxf.2_Intron|AOAH_uc011kba.1_Intron	NM_001637	NP_001628
PLXNA4	91584	broad.mit.edu	37	7	132248742	132248744	+	Intron	DEL	CTC	-	-			2011-2307:2012-1335-T	g.chr7:132248742_132248744delCTC	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
COL22A1	169044	broad.mit.edu	37	8	139818318	139818318	+	Intron	DEL	A	-	-			2011-2307:2012-1335-T	g.chr8:139818318delA	uc003yvd.2	-							NM_152888	NP_690848
POMT1	10585	broad.mit.edu	37	9	134391171	134391174	+	Intron	DEL	GTAA	-	-	rs113878457;rs150484413;rs143650925	by1000genomes	2011-2307:2012-1335-T	g.chr9:134391171_134391174delGTAA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391178	134391179	+	Intron	INS	-	C	C			2011-2307:2012-1335-T	g.chr9:134391178_134391179insC	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391181	134391182	+	Intron	INS	-	G	G			2011-2307:2012-1335-T	g.chr9:134391181_134391182insG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391190	134391191	+	Intron	INS	-	TA	TA			2011-2307:2012-1335-T	g.chr9:134391190_134391191insTA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
PPP2R3B	28227	broad.mit.edu	37	X	314506	314509	+	Intron	DEL	CACC	-	-			2011-2307:2012-1335-T	g.chrX:314506_314509delCACC	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
STARD8	9754	broad.mit.edu	37	X	67873119	67873119	+	Intron	DEL	C	-	-			2011-2307:2012-1335-T	g.chrX:67873119delC	uc004dxa.2	+						STARD8_uc004dxb.2_Intron	NM_014725	NP_055540
SYT2	127833	broad.mit.edu	37	1	202594066	202594067	+	Intron	INS	-	G	G	rs148638021		2011-2309:2012-318-T	g.chr1:202594066_202594067insG	uc001gye.2	-						SYT2_uc010pqb.1_Intron|SYT2_uc009xaf.2_Intron	NM_001136504	NP_001129976
SYT2	127833	broad.mit.edu	37	1	202594067	202594068	+	Intron	INS	-	C	C	rs148638021		2011-2309:2012-318-T	g.chr1:202594067_202594068insC	uc001gye.2	-						SYT2_uc010pqb.1_Intron|SYT2_uc009xaf.2_Intron	NM_001136504	NP_001129976
FAIM3	9214	broad.mit.edu	37	1	207098016	207098019	+	5'Flank	DEL	CTCT	-	-			2011-2309:2012-318-T	g.chr1:207098016_207098019delCTCT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
FMN2	56776	broad.mit.edu	37	1	240348333	240348333	+	Intron	DEL	C	-	-	rs66890903		2011-2309:2012-318-T	g.chr1:240348333delC	uc010pyd.1	+						FMN2_uc010pye.1_Intron	NM_020066	NP_064450
RAB5B	5869	broad.mit.edu	37	12	56366867	56366868	+	5'Flank	INS	-	ATAT	ATAT			2011-2309:2012-318-T	g.chr12:56366867_56366868insATAT	uc001siv.2	+						RAB5B_uc001siw.2_5'Flank|RAB5B_uc009zog.2_5'Flank|RAB5B_uc010spz.1_5'Flank	NM_002868	NP_002859
CBFA2T3	863	broad.mit.edu	37	16	88959708	88959708	+	Intron	DEL	C	-	-			2011-2309:2012-318-T	g.chr16:88959708delC	uc002fmm.1	-						CBFA2T3_uc002fml.1_Intron|CBFA2T3_uc010cif.1_Intron|CBFA2T3_uc002fmn.1_Intron	NM_005187	NP_005178
RPH3AL	9501	broad.mit.edu	37	17	136731	136732	+	Intron	DEL	CT	-	-	rs71863097		2011-2309:2012-318-T	g.chr17:136731_136732delCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	1020647	1020648	+	Intron	INS	-	C	C			2011-2309:2012-318-T	g.chr17:1020647_1020648insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1021042	1021043	+	Intron	INS	-	T	T	rs66551865		2011-2309:2012-318-T	g.chr17:1021042_1021043insT	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
MED16	10025	broad.mit.edu	37	19	876897	876898	+	Intron	INS	-	C	C			2011-2309:2012-318-T	g.chr19:876897_876898insC	uc002lqd.1	-						MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Intron|MED16_uc002lqf.2_Intron|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Intron|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472
SBNO2	22904	broad.mit.edu	37	19	1164574	1164575	+	Intron	INS	-	A	A			2011-2309:2012-318-T	g.chr19:1164574_1164575insA	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
PXDN	7837	broad.mit.edu	37	2	1724161	1724162	+	Intron	DEL	AG	-	-			2011-2309:2012-318-T	g.chr2:1724161_1724162delAG	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87625949	87625949	+	Intron	DEL	A	-	-			2011-2309:2012-318-T	g.chr2:87625949delA	uc002srs.3	+								
GLI2	2736	broad.mit.edu	37	2	121721014	121721015	+	Intron	DEL	TG	-	-			2011-2309:2012-318-T	g.chr2:121721014_121721015delTG	uc010flp.2	+						GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Intron|GLI2_uc010flo.1_Intron|GLI2_uc002tmw.1_Intron	NM_005270	NP_005261
NFE2L2	4780	broad.mit.edu	37	2	178129391	178129393	+	5'UTR	DEL	GGC	-	-			2011-2309:2012-318-T	g.chr2:178129391_178129393delGGC	uc002ulh.3	-	1					NFE2L2_uc002ulg.3_5'Flank|NFE2L2_uc010zfa.1_5'Flank|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_5'Flank|NFE2L2_uc010frb.2_5'Flank	NM_006164	NP_006155
ESPNL	339768	broad.mit.edu	37	2	239034869	239034870	+	Intron	INS	-	TGTG	TGTG	rs11903243;rs67490380	byFrequency;by1000genomes	2011-2309:2012-318-T	g.chr2:239034869_239034870insTGTG	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
RIN2	54453	broad.mit.edu	37	20	19904994	19904995	+	Intron	DEL	CT	-	-			2011-2309:2012-318-T	g.chr20:19904994_19904995delCT	uc002wro.1	+						RIN2_uc010gcu.1_Intron	NM_018993	NP_061866
ADARB1	104	broad.mit.edu	37	21	46529242	46529243	+	Intron	DEL	TA	-	-	rs140518083	by1000genomes	2011-2309:2012-318-T	g.chr21:46529242_46529243delTA	uc002zgy.2	+						ADARB1_uc002zgp.2_Intron|ADARB1_uc002zgr.2_Intron|ADARB1_uc002zgs.2_Intron|ADARB1_uc002zgw.2_Intron|ADARB1_uc002zgv.2_Intron|ADARB1_uc002zgt.2_Intron|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_Intron|ADARB1_uc002zgu.2_Intron	NM_015833	NP_056648
IL17RA	23765	broad.mit.edu	37	22	17584922	17584923	+	Intron	DEL	GT	-	-	rs13054229		2011-2309:2012-318-T	g.chr22:17584922_17584923delGT	uc002zly.2	+						IL17RA_uc010gqt.2_Intron	NM_014339	NP_055154
MUSTN1	389125	broad.mit.edu	37	3	52866685	52866685	+	Intron	DEL	T	-	-	rs11313924		2011-2309:2012-318-T	g.chr3:52866685delT	uc010hmq.1	-						ITIH4_uc011bem.1_5'Flank|ITIH4_uc011ben.1_5'Flank|ITIH4_uc003dfz.2_5'Flank|ITIH4_uc010hmp.1_5'Flank		
CACNA1D	776	broad.mit.edu	37	3	53839906	53839907	+	Intron	DEL	CT	-	-			2011-2309:2012-318-T	g.chr3:53839906_53839907delCT	uc003dgv.3	+						CACNA1D_uc003dgu.3_Intron|CACNA1D_uc003dgy.3_Intron|CACNA1D_uc003dgw.3_Intron|CACNA1D_uc011bes.1_Intron	NM_001128840	NP_001122312
BST1	683	broad.mit.edu	37	4	15705614	15705615	+	Intron	DEL	TG	-	-			2011-2309:2012-318-T	g.chr4:15705614_15705615delTG	uc003goh.3	+							NM_004334	NP_004325
SLC12A7	10723	broad.mit.edu	37	5	1070705	1070705	+	Intron	DEL	G	-	-			2011-2309:2012-318-T	g.chr5:1070705delG	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1070721	1070722	+	Intron	INS	-	AGCCCCCAGTG	AGCCCCCAGTG			2011-2309:2012-318-T	g.chr5:1070721_1070722insAGCCCCCAGTG	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1071393	1071393	+	Intron	DEL	C	-	-			2011-2309:2012-318-T	g.chr5:1071393delC	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1071981	1071981	+	Intron	DEL	C	-	-			2011-2309:2012-318-T	g.chr5:1071981delC	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1272793	1272794	+	Intron	DEL	CA	-	-			2011-2309:2012-318-T	g.chr5:1272793_1272794delCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
PKHD1	5314	broad.mit.edu	37	6	51846287	51846287	+	Intron	DEL	T	-	-			2011-2309:2012-318-T	g.chr6:51846287delT	uc003pah.1	-						PKHD1_uc003pai.2_Intron	NM_138694	NP_619639
SYNE1	23345	broad.mit.edu	37	6	152712716	152712716	+	Intron	DEL	A	-	-			2011-2309:2012-318-T	g.chr6:152712716delA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron	NM_182961	NP_892006
FAM120B	84498	broad.mit.edu	37	6	170707896	170707897	+	Intron	DEL	CT	-	-	rs61634568		2011-2309:2012-318-T	g.chr6:170707896_170707897delCT	uc003qxp.2	+						FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824
ADAP1	11033	broad.mit.edu	37	7	945259	945260	+	Intron	INS	-	A	A	rs145893866		2011-2309:2012-318-T	g.chr7:945259_945260insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
DPP6	1804	broad.mit.edu	37	7	153790720	153790721	+	Intron	INS	-	ACAC	ACAC			2011-2309:2012-318-T	g.chr7:153790720_153790721insACAC	uc003wlk.2	+						DPP6_uc003wli.2_Intron|DPP6_uc003wlj.2_Intron	NM_130797	NP_570629
PTPRN2	5799	broad.mit.edu	37	7	157841508	157841509	+	Intron	INS	-	TTG	TTG			2011-2309:2012-318-T	g.chr7:157841508_157841509insTTG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TOP1MT	116447	broad.mit.edu	37	8	144405984	144405986	+	Intron	DEL	ATG	-	-			2011-2309:2012-318-T	g.chr8:144405984_144405986delATG	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144405999	144406000	+	Intron	DEL	CT	-	-			2011-2309:2012-318-T	g.chr8:144405999_144406000delCT	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TTF1	7270	broad.mit.edu	37	9	135252932	135252933	+	Intron	DEL	GT	-	-			2011-2309:2012-318-T	g.chr9:135252932_135252933delGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
COL5A1	1289	broad.mit.edu	37	9	137577136	137577138	+	Intron	DEL	CCA	-	-	rs140995492		2011-2309:2012-318-T	g.chr9:137577136_137577138delCCA	uc004cfe.2	+							NM_000093	NP_000084
PTDSS2	81490	broad.mit.edu	37	11	471875	471887	+	Intron	DEL	GCACCTGTCTGGT	-	-	rs78978290	by1000genomes	2011-2310:2012-317-T	g.chr11:471875_471887delGCACCTGTCTGGT	uc001lpj.2	+						PTDSS2_uc009ybv.1_Intron	NM_030783	NP_110410
KSR2	283455	broad.mit.edu	37	12	118230923	118230924	+	Intron	INS	-	CAC	CAC	rs150927286	by1000genomes	2011-2310:2012-317-T	g.chr12:118230923_118230924insCAC	uc001two.2	-							NM_173598	NP_775869
TMEM132D	121256	broad.mit.edu	37	12	129572417	129572418	+	Intron	INS	-	G	G			2011-2310:2012-317-T	g.chr12:129572417_129572418insG	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
ATP11A	23250	broad.mit.edu	37	13	113482427	113482428	+	Intron	INS	-	C	C	rs11374222;rs67385364		2011-2310:2012-317-T	g.chr13:113482427_113482428insC	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc001vsm.1_Intron	NM_015205	NP_056020
PPP4R4	57718	broad.mit.edu	37	14	94684723	94684724	+	Intron	DEL	CA	-	-			2011-2310:2012-317-T	g.chr14:94684723_94684724delCA	uc001ycs.1	+						PPP4R4_uc001ycr.2_Intron	NM_058237	NP_478144
PIGQ	9091	broad.mit.edu	37	16	621075	621076	+	Intron	INS	-	GCTAGCC	GCTAGCC			2011-2310:2012-317-T	g.chr16:621075_621076insGCTAGCC	uc002cho.2	+						PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_Intron|PIGQ_uc002chn.2_Intron|PIGQ_uc010uui.1_5'Flank	NM_148920	NP_683721
LMF1	64788	broad.mit.edu	37	16	1003875	1003876	+	Intron	INS	-	CACC	CACC	rs71771835		2011-2310:2012-317-T	g.chr16:1003875_1003876insCACC	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
DPEP1	1800	broad.mit.edu	37	16	89700980	89700980	+	Intron	DEL	T	-	-			2011-2310:2012-317-T	g.chr16:89700980delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701019	89701019	+	Intron	DEL	C	-	-			2011-2310:2012-317-T	g.chr16:89701019delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701459	89701459	+	Intron	DEL	T	-	-	rs140405987		2011-2310:2012-317-T	g.chr16:89701459delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
RPH3AL	9501	broad.mit.edu	37	17	138550	138551	+	Intron	INS	-	CT	CT			2011-2310:2012-317-T	g.chr17:138550_138551insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
DLG4	1742	broad.mit.edu	37	17	7111052	7111053	+	Intron	DEL	CA	-	-			2011-2310:2012-317-T	g.chr17:7111052_7111053delCA	uc002get.3	-						DLG4_uc010vtn.1_5'Flank|DLG4_uc010cly.2_Intron|DLG4_uc010vto.1_Intron|DLG4_uc002geu.2_Intron	NM_001365	NP_001356
STAT3	6774	broad.mit.edu	37	17	40497421	40497422	+	Intron	INS	-	T	T	rs146141548		2011-2310:2012-317-T	g.chr17:40497421_40497422insT	uc002hzl.1	-						STAT3_uc002hzk.1_Intron|STAT3_uc002hzm.1_Intron|STAT3_uc010wgh.1_Intron|STAT3_uc002hzn.1_Intron	NM_139276	NP_644805
CACNG1	786	broad.mit.edu	37	17	65050842	65050843	+	Intron	DEL	AC	-	-	rs142184541;rs71139112		2011-2310:2012-317-T	g.chr17:65050842_65050843delAC	uc002jfu.2	+							NM_000727	NP_000718
PRCD	768206	broad.mit.edu	37	17	74522834	74522834	+	5'Flank	DEL	G	-	-			2011-2310:2012-317-T	g.chr17:74522834delG	uc002jrw.1	+								
ST8SIA5	29906	broad.mit.edu	37	18	44337444	44337444	+	5'Flank	DEL	G	-	-	rs2469473		2011-2310:2012-317-T	g.chr18:44337444delG	uc002lcj.1	-						ST8SIA5_uc010xcy.1_5'Flank|ST8SIA5_uc010xcz.1_5'Flank|ST8SIA5_uc010dno.1_5'Flank	NM_013305	NP_037437
CACNG7	59284	broad.mit.edu	37	19	54424888	54424888	+	Intron	DEL	T	-	-	rs67447211		2011-2310:2012-317-T	g.chr19:54424888delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
C20orf26	26074	broad.mit.edu	37	20	20336089	20336090	+	Intron	DEL	TG	-	-			2011-2310:2012-317-T	g.chr20:20336089_20336090delTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20337194	20337195	+	Intron	INS	-	TG	TG			2011-2310:2012-317-T	g.chr20:20337194_20337195insTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
PRIC285	85441	broad.mit.edu	37	20	62190932	62190933	+	Intron	INS	-	T	T			2011-2310:2012-317-T	g.chr20:62190932_62190933insT	uc002yfm.2	-						PRIC285_uc002yfl.1_Intron	NM_001037335	NP_001032412
CACNA1D	776	broad.mit.edu	37	3	53839943	53839944	+	Intron	DEL	TG	-	-			2011-2310:2012-317-T	g.chr3:53839943_53839944delTG	uc003dgv.3	+						CACNA1D_uc003dgu.3_Intron|CACNA1D_uc003dgy.3_Intron|CACNA1D_uc003dgw.3_Intron|CACNA1D_uc011bes.1_Intron	NM_001128840	NP_001122312
SLC12A7	10723	broad.mit.edu	37	5	1070682	1070682	+	Intron	DEL	C	-	-			2011-2310:2012-317-T	g.chr5:1070682delC	uc003jbu.2	-							NM_006598	NP_006589
ADAMTS16	170690	broad.mit.edu	37	5	5305620	5305621	+	Intron	INS	-	A	A			2011-2310:2012-317-T	g.chr5:5305620_5305621insA	uc003jdl.2	+							NM_139056	NP_620687
COL23A1	91522	broad.mit.edu	37	5	177672079	177672081	+	Intron	DEL	ATC	-	-	rs72123410		2011-2310:2012-317-T	g.chr5:177672079_177672081delATC	uc003mje.2	-						COL23A1_uc010jkt.2_Intron	NM_173465	NP_775736
RUFY1	80230	broad.mit.edu	37	5	179032861	179032861	+	Intron	DEL	T	-	-			2011-2310:2012-317-T	g.chr5:179032861delT	uc003mka.1	+						RUFY1_uc003mkb.1_Intron|RUFY1_uc003mkc.1_Intron|RUFY1_uc003mkd.1_Intron	NM_025158	NP_079434
CAPN11	11131	broad.mit.edu	37	6	44149399	44149400	+	Intron	INS	-	CA	CA			2011-2310:2012-317-T	g.chr6:44149399_44149400insCA	uc003owt.1	+						CAPN11_uc011dvn.1_Intron	NM_007058	NP_008989
MAGI2	9863	broad.mit.edu	37	7	78031652	78031653	+	Intron	DEL	TG	-	-			2011-2310:2012-317-T	g.chr7:78031652_78031653delTG	uc003ugx.2	-						MAGI2_uc003ugy.2_Intron|MAGI2_uc010ldx.1_Intron|MAGI2_uc010ldy.1_Intron|MAGI2_uc011kgr.1_Intron|MAGI2_uc011kgs.1_Intron	NM_012301	NP_036433
NCAPG2	54892	broad.mit.edu	37	7	158460414	158460415	+	Intron	INS	-	C	C	rs151281424		2011-2310:2012-317-T	g.chr7:158460414_158460415insC	uc003wnv.1	-						NCAPG2_uc010lqu.1_Intron|NCAPG2_uc003wnw.1_Intron|NCAPG2_uc003wnx.1_Intron|NCAPG2_uc011kwe.1_Intron|NCAPG2_uc011kwc.1_5'Flank|NCAPG2_uc011kwd.1_5'Flank	NM_017760	NP_060230
NCAPG2	54892	broad.mit.edu	37	7	158460935	158460936	+	Intron	INS	-	C	C	rs115206181	by1000genomes	2011-2310:2012-317-T	g.chr7:158460935_158460936insC	uc003wnv.1	-						NCAPG2_uc010lqu.1_Intron|NCAPG2_uc003wnw.1_Intron|NCAPG2_uc003wnx.1_Intron|NCAPG2_uc011kwe.1_Intron|NCAPG2_uc011kwc.1_5'Flank	NM_017760	NP_060230
COL22A1	169044	broad.mit.edu	37	8	139818345	139818345	+	Intron	DEL	G	-	-			2011-2310:2012-317-T	g.chr8:139818345delG	uc003yvd.2	-							NM_152888	NP_690848
COL22A1	169044	broad.mit.edu	37	8	139818348	139818349	+	Intron	DEL	TT	-	-			2011-2310:2012-317-T	g.chr8:139818348_139818349delTT	uc003yvd.2	-							NM_152888	NP_690848
CDKN2A	1029	broad.mit.edu	37	9	21974759	21974759	+	Frame_Shift_Del	DEL	C	-	-			2011-2310:2012-317-T	g.chr9:21974759delC	uc003zpk.2	-	1	280	c.68delG	c.(67-69)GGTfs	p.G23fs	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Frame_Shift_Del_p.G23fs|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068
EXD3	54932	broad.mit.edu	37	9	140249942	140249943	+	Intron	INS	-	A	A			2011-2310:2012-317-T	g.chr9:140249942_140249943insA	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
CRLF2	64109	broad.mit.edu	37	X	1316493	1316496	+	Intron	DEL	CCAG	-	-			2011-2310:2012-317-T	g.chrX:1316493_1316496delCCAG	uc004cpm.1	-								
DHRSX	207063	broad.mit.edu	37	X	2300710	2300711	+	Intron	INS	-	CAC	CAC			2011-2310:2012-317-T	g.chrX:2300710_2300711insCAC	uc004cqf.3	-							NM_145177	NP_660160
ODZ1	10178	broad.mit.edu	37	X	124097823	124097824	+	5'Flank	DEL	CT	-	-			2011-2310:2012-317-T	g.chrX:124097823_124097824delCT	uc004euj.2	-						ODZ1_uc011muj.1_5'Flank|ODZ1_uc010nqy.2_5'Flank	NM_014253	NP_055068
PRDM16	63976	broad.mit.edu	37	1	3186978	3186979	+	Intron	DEL	CC	-	-			2011-2311:2012-362-T	g.chr1:3186978_3186979delCC	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
UBR4	23352	broad.mit.edu	37	1	19398947	19398949	+	RNA	DEL	CTG	-	-			2011-2311:2012-362-T	g.chr1:19398947_19398949delCTG	uc001bbe.1	-	1		c.3057_3059delCAG					
SMYD3	64754	broad.mit.edu	37	1	246187647	246187648	+	Intron	INS	-	A	A			2011-2311:2012-362-T	g.chr1:246187647_246187648insA	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
ADARB2	105	broad.mit.edu	37	10	1282215	1282217	+	Intron	DEL	CCT	-	-	rs71491353		2011-2311:2012-362-T	g.chr10:1282215_1282217delCCT	uc009xhq.2	-							NM_018702	NP_061172
CUBN	8029	broad.mit.edu	37	10	17110578	17110578	+	Intron	DEL	A	-	-			2011-2311:2012-362-T	g.chr10:17110578delA	uc001ioo.2	-							NM_001081	NP_001072
ANXA8	653145	broad.mit.edu	37	10	47058971	47058972	+	Intron	INS	-	CA	CA	rs144230274		2011-2311:2012-362-T	g.chr10:47058971_47058972insCA	uc001jed.3	-								
CHST15	51363	broad.mit.edu	37	10	125803613	125803614	+	Intron	INS	-	A	A			2011-2311:2012-362-T	g.chr10:125803613_125803614insA	uc001lhl.2	-						CHST15_uc001lhm.2_Intron|CHST15_uc001lhn.2_Intron|CHST15_uc010que.1_Intron|CHST15_uc001lho.2_Intron	NM_015892	NP_056976
B4GALNT3	283358	broad.mit.edu	37	12	620920	620921	+	Intron	INS	-	C	C			2011-2311:2012-362-T	g.chr12:620920_620921insC	uc001qii.1	+							NM_173593	NP_775864
MYO1H	283446	broad.mit.edu	37	12	109880910	109880911	+	Intron	DEL	TA	-	-			2011-2311:2012-362-T	g.chr12:109880910_109880911delTA	uc010sxo.1	+						MYO1H_uc010sxn.1_Intron		
ANKLE2	23141	broad.mit.edu	37	12	133319369	133319369	+	Intron	DEL	C	-	-			2011-2311:2012-362-T	g.chr12:133319369delC	uc001ukx.2	-						ANKLE2_uc001uky.3_Intron	NM_015114	NP_055929
PCCA	5095	broad.mit.edu	37	13	101104158	101104158	+	Intron	DEL	C	-	-			2011-2311:2012-362-T	g.chr13:101104158delC	uc001voo.2	+						PCCA_uc010aga.2_Intron|PCCA_uc010tiz.1_Intron|PCCA_uc001vop.2_Intron	NM_000282	NP_000273
ATP11A	23250	broad.mit.edu	37	13	113369666	113369667	+	Intron	INS	-	C	C			2011-2311:2012-362-T	g.chr13:113369666_113369667insC	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
ATP11A	23250	broad.mit.edu	37	13	113433571	113433573	+	Intron	DEL	GAG	-	-			2011-2311:2012-362-T	g.chr13:113433571_113433573delGAG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
ATP11A	23250	broad.mit.edu	37	13	113433578	113433580	+	Intron	DEL	AGC	-	-			2011-2311:2012-362-T	g.chr13:113433578_113433580delAGC	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
ATP11A	23250	broad.mit.edu	37	13	113482432	113482433	+	Intron	INS	-	A	A	rs143513857	by1000genomes	2011-2311:2012-362-T	g.chr13:113482432_113482433insA	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc001vsm.1_Intron	NM_015205	NP_056020
F7	2155	broad.mit.edu	37	13	113761657	113761658	+	Intron	INS	-	T	T	rs71446936		2011-2311:2012-362-T	g.chr13:113761657_113761658insT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
RASA3	22821	broad.mit.edu	37	13	114761573	114761574	+	Intron	INS	-	G	G			2011-2311:2012-362-T	g.chr13:114761573_114761574insG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
RASA3	22821	broad.mit.edu	37	13	114772897	114772898	+	Intron	INS	-	CC	CC			2011-2311:2012-362-T	g.chr13:114772897_114772898insCC	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
RAB11FIP3	9727	broad.mit.edu	37	16	554687	554687	+	Intron	DEL	T	-	-			2011-2311:2012-362-T	g.chr16:554687delT	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
DPEP1	1800	broad.mit.edu	37	16	89701145	89701145	+	Intron	DEL	C	-	-			2011-2311:2012-362-T	g.chr16:89701145delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
RPH3AL	9501	broad.mit.edu	37	17	165323	165324	+	Intron	INS	-	A	A			2011-2311:2012-362-T	g.chr17:165323_165324insA	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
EIF4A3	9775	broad.mit.edu	37	17	78120865	78120866	+	5'Flank	DEL	TG	-	-			2011-2311:2012-362-T	g.chr17:78120865_78120866delTG	uc010wuc.1	-						EIF4A3_uc002jxs.2_5'UTR	NM_014740	NP_055555
BAHCC1	57597	broad.mit.edu	37	17	79399218	79399218	+	Intron	DEL	T	-	-			2011-2311:2012-362-T	g.chr17:79399218delT	uc002kaf.2	+							NM_001080519	NP_001073988
BAHCC1	57597	broad.mit.edu	37	17	79399287	79399288	+	Intron	INS	-	TGGTGGTGATAG	TGGTGGTGATAG			2011-2311:2012-362-T	g.chr17:79399287_79399288insTGGTGGTGATAG	uc002kaf.2	+							NM_001080519	NP_001073988
BAHCC1	57597	broad.mit.edu	37	17	79399298	79399299	+	Intron	INS	-	A	A			2011-2311:2012-362-T	g.chr17:79399298_79399299insA	uc002kaf.2	+							NM_001080519	NP_001073988
PQLC1	80148	broad.mit.edu	37	18	77669682	77669683	+	Intron	DEL	AA	-	-			2011-2311:2012-362-T	g.chr18:77669682_77669683delAA	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
HCN2	610	broad.mit.edu	37	19	602295	602299	+	Intron	DEL	CTCTC	-	-			2011-2311:2012-362-T	g.chr19:602295_602299delCTCTC	uc002lpe.2	+							NM_001194	NP_001185
INSR	3643	broad.mit.edu	37	19	7197589	7197592	+	Intron	DEL	GTGT	-	-	rs113829911;rs13344151		2011-2311:2012-362-T	g.chr19:7197589_7197592delGTGT	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
INSR	3643	broad.mit.edu	37	19	7197695	7197696	+	Intron	INS	-	GT	GT			2011-2311:2012-362-T	g.chr19:7197695_7197696insGT	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
SIN3B	23309	broad.mit.edu	37	19	16986480	16986484	+	Intron	DEL	TGGTC	-	-			2011-2311:2012-362-T	g.chr19:16986480_16986484delTGGTC	uc002ney.1	+						SIN3B_uc002nez.1_Intron|SIN3B_uc010xpi.1_Intron|SIN3B_uc010eaj.1_5'Flank	NM_015260	NP_056075
CACNG7	59284	broad.mit.edu	37	19	54425265	54425265	+	Intron	DEL	T	-	-			2011-2311:2012-362-T	g.chr19:54425265delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
CACNG7	59284	broad.mit.edu	37	19	54426460	54426461	+	Intron	INS	-	T	T			2011-2311:2012-362-T	g.chr19:54426460_54426461insT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
ZNF444	55311	broad.mit.edu	37	19	56660504	56660505	+	Intron	INS	-	C	C			2011-2311:2012-362-T	g.chr19:56660504_56660505insC	uc002qmm.2	+						ZNF444_uc002qmn.1_Intron	NM_018337	NP_060807
PXDN	7837	broad.mit.edu	37	2	1683526	1683529	+	Intron	DEL	GTGT	-	-			2011-2311:2012-362-T	g.chr2:1683526_1683529delGTGT	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
C2orf65	130951	broad.mit.edu	37	2	74788299	74788300	+	Intron	INS	-	AGA	AGA			2011-2311:2012-362-T	g.chr2:74788299_74788300insAGA	uc002smy.2	-						C2orf65_uc010ysa.1_Intron|C2orf65_uc010ffp.2_Intron|C2orf65_uc002smx.2_Intron	NM_138804	NP_620159
RMND5A	64795	broad.mit.edu	37	2	87623776	87623776	+	Intron	DEL	A	-	-			2011-2311:2012-362-T	g.chr2:87623776delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641742	87641745	+	Intron	DEL	AGCC	-	-			2011-2311:2012-362-T	g.chr2:87641742_87641745delAGCC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87642644	87642644	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr2:87642644delG	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643612	87643613	+	Intron	INS	-	A	A			2011-2311:2012-362-T	g.chr2:87643612_87643613insA	uc002srs.3	+								
AFF3	3899	broad.mit.edu	37	2	100632483	100632485	+	Intron	DEL	GTG	-	-			2011-2311:2012-362-T	g.chr2:100632483_100632485delGTG	uc002tag.2	-						AFF3_uc002taf.2_Intron|AFF3_uc010fiq.1_Intron|AFF3_uc010yvr.1_Intron|AFF3_uc002tah.1_Intron|AFF3_uc010fir.1_Intron	NM_002285	NP_002276
HDAC4	9759	broad.mit.edu	37	2	240203285	240203288	+	Intron	DEL	CACA	-	-			2011-2311:2012-362-T	g.chr2:240203285_240203288delCACA	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron	NM_006037	NP_006028
TAF4	6874	broad.mit.edu	37	20	60557124	60557124	+	Intron	DEL	C	-	-	rs112352725		2011-2311:2012-362-T	g.chr20:60557124delC	uc002ybs.2	-							NM_003185	NP_003176
KCNQ2	3785	broad.mit.edu	37	20	62074646	62074648	+	Intron	DEL	CAC	-	-			2011-2311:2012-362-T	g.chr20:62074646_62074648delCAC	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron|KCNQ2_uc002yfc.1_Intron	NM_172107	NP_742105
EEF1A2	1917	broad.mit.edu	37	20	62123799	62123802	+	Intron	DEL	ATGG	-	-			2011-2311:2012-362-T	g.chr20:62123799_62123802delATGG	uc002yfd.1	-						EEF1A2_uc002yfe.1_Intron|EEF1A2_uc010gkg.1_Intron	NM_001958	NP_001949
DSCAM	1826	broad.mit.edu	37	21	41658774	41658775	+	Intron	INS	-	A	A	rs62223768;rs62223769		2011-2311:2012-362-T	g.chr21:41658774_41658775insA	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
CLTCL1	8218	broad.mit.edu	37	22	19190024	19190025	+	Intron	INS	-	T	T	rs142594988	by1000genomes	2011-2311:2012-362-T	g.chr22:19190024_19190025insT	uc002zpb.2	-						CLTCL1_uc011agv.1_Intron|CLTCL1_uc011agw.1_Intron|CLTCL1_uc011agt.1_Intron|CLTCL1_uc011agu.1_Intron|CLTCL1_uc010grm.1_Intron|CLTCL1_uc002zpe.2_Intron|CLTCL1_uc002zpd.1_Intron	NM_007098	NP_009029
PARVB	29780	broad.mit.edu	37	22	44550819	44550820	+	Intron	INS	-	TG	TG	rs140446126	by1000genomes	2011-2311:2012-362-T	g.chr22:44550819_44550820insTG	uc003ben.2	+						PARVB_uc003bem.2_Intron|PARVB_uc010gzn.2_Intron|PARVB_uc003beo.2_Intron	NM_013327	NP_037459
MAPKAPK3	7867	broad.mit.edu	37	3	50670862	50670863	+	Intron	DEL	CA	-	-			2011-2311:2012-362-T	g.chr3:50670862_50670863delCA	uc003day.1	+						MAPKAPK3_uc003daz.1_Intron|MAPKAPK3_uc003dba.1_Intron|MAPKAPK3_uc010hlr.1_Intron	NM_004635	NP_004626
TNK2	10188	broad.mit.edu	37	3	195597917	195597918	+	Intron	INS	-	G	G			2011-2311:2012-362-T	g.chr3:195597917_195597918insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
SH3TC1	54436	broad.mit.edu	37	4	8241157	8241158	+	Intron	INS	-	CA	CA	rs145892605;rs137987746	by1000genomes	2011-2311:2012-362-T	g.chr4:8241157_8241158insCA	uc003gkv.3	+						SH3TC1_uc003gkw.3_Intron|SH3TC1_uc003gkx.3_Intron|SH3TC1_uc003gky.2_Intron	NM_018986	NP_061859
BST1	683	broad.mit.edu	37	4	15705341	15705342	+	Intron	DEL	GT	-	-			2011-2311:2012-362-T	g.chr4:15705341_15705342delGT	uc003goh.3	+							NM_004334	NP_004325
KLKB1	3818	broad.mit.edu	37	4	187173886	187173887	+	Intron	INS	-	ATCCC	ATCCC			2011-2311:2012-362-T	g.chr4:187173886_187173887insATCCC	uc003iyy.2	+						KLKB1_uc011clc.1_Intron|KLKB1_uc011cld.1_Intron	NM_000892	NP_000883
MTNR1A	4543	broad.mit.edu	37	4	187461961	187461962	+	Intron	INS	-	GAAG	GAAG	rs34538990		2011-2311:2012-362-T	g.chr4:187461961_187461962insGAAG	uc003izd.1	-							NM_005958	NP_005949
CEP72	55722	broad.mit.edu	37	5	649777	649778	+	Intron	INS	-	G	G			2011-2311:2012-362-T	g.chr5:649777_649778insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650191	650192	+	Intron	DEL	TG	-	-			2011-2311:2012-362-T	g.chr5:650191_650192delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650781	650781	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr5:650781delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651202	651202	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr5:651202delG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1070270	1070270	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr5:1070270delG	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072600	1072600	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr5:1072600delG	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1273198	1273199	+	Intron	DEL	CA	-	-	rs72327925		2011-2311:2012-362-T	g.chr5:1273198_1273199delCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
TERT	7015	broad.mit.edu	37	5	1273779	1273780	+	Intron	DEL	CA	-	-			2011-2311:2012-362-T	g.chr5:1273779_1273780delCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
ADAMTS2	9509	broad.mit.edu	37	5	178704796	178704796	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr5:178704796delG	uc003mjw.2	-						ADAMTS2_uc011dgm.1_Intron	NM_014244	NP_055059
ADAP1	11033	broad.mit.edu	37	7	945239	945239	+	Intron	DEL	A	-	-			2011-2311:2012-362-T	g.chr7:945239delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982028	982028	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr7:982028delG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
MAD1L1	8379	broad.mit.edu	37	7	2035905	2035906	+	Intron	INS	-	C	C	rs68072290		2011-2311:2012-362-T	g.chr7:2035905_2035906insC	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
ELMO1	9844	broad.mit.edu	37	7	37487318	37487329	+	Intron	DEL	CACACACACACA	-	-	rs66548804;rs36083259		2011-2311:2012-362-T	g.chr7:37487318_37487329delCACACACACACA	uc003tfk.1	-						ELMO1_uc010kxg.1_Intron	NM_014800	NP_055615
MAGI2	9863	broad.mit.edu	37	7	78031652	78031653	+	Intron	DEL	TG	-	-			2011-2311:2012-362-T	g.chr7:78031652_78031653delTG	uc003ugx.2	-						MAGI2_uc003ugy.2_Intron|MAGI2_uc010ldx.1_Intron|MAGI2_uc010ldy.1_Intron|MAGI2_uc011kgr.1_Intron|MAGI2_uc011kgs.1_Intron	NM_012301	NP_036433
ERICH1	157697	broad.mit.edu	37	8	625787	625787	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr8:625787delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
RP1L1	94137	broad.mit.edu	37	8	10481007	10481023	+	Intron	DEL	CACCATGTCCCCAGAAC	-	-	rs112766794;rs75230744;rs71203343;rs77126814;rs75015898;rs148851696;rs4557665;rs80308501;rs77231797		2011-2311:2012-362-T	g.chr8:10481007_10481023delCACCATGTCCCCAGAAC	uc003wtc.2	-							NM_178857	NP_849188
CSMD3	114788	broad.mit.edu	37	8	113515941	113515941	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr8:113515941delG	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
PARP10	84875	broad.mit.edu	37	8	145055878	145055880	+	Intron	DEL	TGA	-	-			2011-2311:2012-362-T	g.chr8:145055878_145055880delTGA	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
DOCK8	81704	broad.mit.edu	37	9	400472	400472	+	Intron	DEL	C	-	-			2011-2311:2012-362-T	g.chr9:400472delC	uc003zgf.2	+						DOCK8_uc010mgu.2_Intron|DOCK8_uc010mgv.2_Intron|DOCK8_uc010mgw.1_Intron|DOCK8_uc003zgk.2_Intron	NM_203447	NP_982272
EXD3	54932	broad.mit.edu	37	9	140224570	140224570	+	Intron	DEL	G	-	-			2011-2311:2012-362-T	g.chr9:140224570delG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
EHMT1	79813	broad.mit.edu	37	9	140610840	140610842	+	Intron	DEL	TGT	-	-	rs142045955	by1000genomes	2011-2311:2012-362-T	g.chr9:140610840_140610842delTGT	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
EHMT1	79813	broad.mit.edu	37	9	140615652	140615653	+	Intron	INS	-	C	C			2011-2311:2012-362-T	g.chr9:140615652_140615653insC	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
AGRN	375790	broad.mit.edu	37	1	966467	966468	+	Intron	INS	-	TG	TG			2011-2312:2012-361-T	g.chr1:966467_966468insTG	uc001ack.1	+							NM_198576	NP_940978
LRP5	4041	broad.mit.edu	37	11	68189265	68189268	+	Intron	DEL	GTGT	-	-			2011-2312:2012-361-T	g.chr11:68189265_68189268delGTGT	uc001ont.2	+						LRP5_uc009ysg.2_Intron	NM_002335	NP_002326
FAT3	120114	broad.mit.edu	37	11	92438785	92438786	+	Intron	DEL	GT	-	-			2011-2312:2012-361-T	g.chr11:92438785_92438786delGT	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438828	92438829	+	Intron	INS	-	G	G			2011-2312:2012-361-T	g.chr11:92438828_92438829insG	uc001pdj.3	+							NM_001008781	NP_001008781
B4GALNT3	283358	broad.mit.edu	37	12	621013	621016	+	Intron	DEL	CCAC	-	-			2011-2312:2012-361-T	g.chr12:621013_621016delCCAC	uc001qii.1	+							NM_173593	NP_775864
DHX37	57647	broad.mit.edu	37	12	125445826	125445827	+	Intron	INS	-	CG	CG	rs10699906		2011-2312:2012-361-T	g.chr12:125445826_125445827insCG	uc001ugy.2	-							NM_032656	NP_116045
CUL4A	8451	broad.mit.edu	37	13	113886381	113886382	+	Intron	INS	-	C	C			2011-2312:2012-361-T	g.chr13:113886381_113886382insC	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc001vtl.1_5'Flank	NM_001008895	NP_001008895
CUL4A	8451	broad.mit.edu	37	13	113886382	113886383	+	Intron	INS	-	GC	GC			2011-2312:2012-361-T	g.chr13:113886382_113886383insGC	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc001vtl.1_5'Flank	NM_001008895	NP_001008895
INF2	64423	broad.mit.edu	37	14	105187402	105187403	+	Intron	INS	-	C	C			2011-2312:2012-361-T	g.chr14:105187402_105187403insC	uc010tyi.1	+							NM_022489	NP_071934
INF2	64423	broad.mit.edu	37	14	105187436	105187437	+	Intron	INS	-	C	C			2011-2312:2012-361-T	g.chr14:105187436_105187437insC	uc010tyi.1	+							NM_022489	NP_071934
INF2	64423	broad.mit.edu	37	14	105187468	105187468	+	Intron	DEL	C	-	-			2011-2312:2012-361-T	g.chr14:105187468delC	uc010tyi.1	+							NM_022489	NP_071934
INF2	64423	broad.mit.edu	37	14	105187470	105187472	+	Intron	DEL	TCC	-	-			2011-2312:2012-361-T	g.chr14:105187470_105187472delTCC	uc010tyi.1	+							NM_022489	NP_071934
SOLH	6650	broad.mit.edu	37	16	594831	594832	+	Intron	INS	-	T	T	rs11444365		2011-2312:2012-361-T	g.chr16:594831_594832insT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
LMF1	64788	broad.mit.edu	37	16	908496	908497	+	Intron	INS	-	A	A	rs74531533		2011-2312:2012-361-T	g.chr16:908496_908497insA	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
JPH3	57338	broad.mit.edu	37	16	87637894	87637896	+	Intron	DEL	CTG	-	-			2011-2312:2012-361-T	g.chr16:87637894_87637896delCTG	uc002fkd.2	+						JPH3_uc010vou.1_Intron	NM_020655	NP_065706
KLHDC4	54758	broad.mit.edu	37	16	87772470	87772471	+	Intron	INS	-	CATC	CATC	rs71667828		2011-2312:2012-361-T	g.chr16:87772470_87772471insCATC	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
NXN	64359	broad.mit.edu	37	17	795401	795402	+	Intron	INS	-	C	C			2011-2312:2012-361-T	g.chr17:795401_795402insC	uc002fsa.2	-						NXN_uc002fsb.1_Intron	NM_022463	NP_071908
BAHCC1	57597	broad.mit.edu	37	17	79398775	79398776	+	Intron	INS	-	G	G			2011-2312:2012-361-T	g.chr17:79398775_79398776insG	uc002kaf.2	+							NM_001080519	NP_001073988
TBCD	6904	broad.mit.edu	37	17	80806756	80806756	+	Intron	DEL	C	-	-	rs67238067		2011-2312:2012-361-T	g.chr17:80806756delC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
PEPD	5184	broad.mit.edu	37	19	33949472	33949480	+	Intron	DEL	ATGTGGAAC	-	-	rs61720709		2011-2312:2012-361-T	g.chr19:33949472_33949480delATGTGGAAC	uc002nur.3	-						PEPD_uc010xrr.1_Intron|PEPD_uc010xrs.1_Intron	NM_000285	NP_000276
TSSC1	7260	broad.mit.edu	37	2	3203697	3203698	+	Intron	INS	-	A	A			2011-2312:2012-361-T	g.chr2:3203697_3203698insA	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
TSSC1	7260	broad.mit.edu	37	2	3203699	3203700	+	Intron	INS	-	GGT	GGT	rs55762340		2011-2312:2012-361-T	g.chr2:3203699_3203700insGGT	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
RMND5A	64795	broad.mit.edu	37	2	87634011	87634011	+	Intron	DEL	A	-	-			2011-2312:2012-361-T	g.chr2:87634011delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87655729	87655730	+	Intron	INS	-	G	G			2011-2312:2012-361-T	g.chr2:87655729_87655730insG	uc002srs.3	+								
SGPP2	130367	broad.mit.edu	37	2	223421514	223421514	+	Intron	DEL	T	-	-			2011-2312:2012-361-T	g.chr2:223421514delT	uc010zlo.1	+						SGPP2_uc010zlp.1_Intron	NM_152386	NP_689599
SGPP2	130367	broad.mit.edu	37	2	223421575	223421575	+	Intron	DEL	T	-	-			2011-2312:2012-361-T	g.chr2:223421575delT	uc010zlo.1	+						SGPP2_uc010zlp.1_Intron	NM_152386	NP_689599
COL18A1	80781	broad.mit.edu	37	21	46920755	46920756	+	Intron	INS	-	GT	GT			2011-2312:2012-361-T	g.chr21:46920755_46920756insGT	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron|SLC19A1_uc010gpy.1_Intron	NM_130444	NP_569711
TTLL8	164714	broad.mit.edu	37	22	50467117	50467118	+	Intron	INS	-	C	C	rs137985926	by1000genomes	2011-2312:2012-361-T	g.chr22:50467117_50467118insC	uc011ark.1	-							NM_001080447	NP_001073916
ADCY5	111	broad.mit.edu	37	3	123102705	123102706	+	Intron	DEL	CA	-	-			2011-2312:2012-361-T	g.chr3:123102705_123102706delCA	uc003egh.1	-						ADCY5_uc003egg.1_Intron|ADCY5_uc003egi.1_Intron	NM_183357	NP_899200
IFT122	55764	broad.mit.edu	37	3	129235538	129235539	+	Intron	DEL	CA	-	-	rs145311776	by1000genomes	2011-2312:2012-361-T	g.chr3:129235538_129235539delCA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
IFT122	55764	broad.mit.edu	37	3	129236112	129236115	+	Intron	DEL	CACA	-	-	rs146861755;rs9855705	by1000genomes	2011-2312:2012-361-T	g.chr3:129236112_129236115delCACA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
SH3BP2	6452	broad.mit.edu	37	4	2828024	2828025	+	Intron	INS	-	TG	TG	rs72349001		2011-2312:2012-361-T	g.chr4:2828024_2828025insTG	uc003gfi.3	+						SH3BP2_uc011bvp.1_Intron|SH3BP2_uc003gfj.3_Intron|SH3BP2_uc003gfk.3_Intron|SH3BP2_uc003gfl.3_Intron|SH3BP2_uc003gfm.3_5'Flank	NM_001122681	NP_001116153
CEP72	55722	broad.mit.edu	37	5	649181	649181	+	Intron	DEL	G	-	-			2011-2312:2012-361-T	g.chr5:649181delG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1070488	1070489	+	Intron	INS	-	G	G	rs71887531		2011-2312:2012-361-T	g.chr5:1070488_1070489insG	uc003jbu.2	-							NM_006598	NP_006589
TCP10	6953	broad.mit.edu	37	6	167800592	167800593	+	5'Flank	INS	-	GA	GA			2011-2312:2012-361-T	g.chr6:167800592_167800593insGA	uc003qvv.1	-						TCP10_uc003qvu.2_5'Flank|TCP10_uc003qvw.2_5'Flank	NM_004610	NP_004601
DLX6	1750	broad.mit.edu	37	7	96635420	96635421	+	Intron	INS	-	GCC	GCC			2011-2312:2012-361-T	g.chr7:96635420_96635421insGCC	uc003uom.2	+						DLX6AS_uc003uok.2_5'Flank|DLX6AS_uc003uol.2_Intron|DLX6AS_uc010lfo.1_Intron	NM_005222	NP_005213
WDR86	349136	broad.mit.edu	37	7	151094868	151094869	+	Intron	INS	-	AG	AG			2011-2312:2012-361-T	g.chr7:151094868_151094869insAG	uc003wkb.2	-						WDR86_uc003wka.2_Intron|WDR86_uc011kvk.1_Intron|WDR86_uc003wkc.2_Intron	NM_198285	NP_938026
ERICH1	157697	broad.mit.edu	37	8	625156	625157	+	Intron	INS	-	G	G			2011-2312:2012-361-T	g.chr8:625156_625157insG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
SOX7	83595	broad.mit.edu	37	8	10691151	10691152	+	Intron	DEL	AT	-	-			2011-2312:2012-361-T	g.chr8:10691151_10691152delAT	uc011kwz.1	-						PINX1_uc003wth.2_Intron|PINX1_uc003wti.2_Intron	NM_031439	NP_113627
HEATR7A	727957	broad.mit.edu	37	8	145288395	145288395	+	Intron	DEL	C	-	-			2011-2312:2012-361-T	g.chr8:145288395delC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
COL5A1	1289	broad.mit.edu	37	9	137577287	137577289	+	Intron	DEL	TTG	-	-	rs140155348;rs117330509	by1000genomes	2011-2312:2012-361-T	g.chr9:137577287_137577289delTTG	uc004cfe.2	+							NM_000093	NP_000084
COL5A1	1289	broad.mit.edu	37	9	137577301	137577301	+	Intron	DEL	T	-	-			2011-2312:2012-361-T	g.chr9:137577301delT	uc004cfe.2	+							NM_000093	NP_000084
PCDH11X	27328	broad.mit.edu	37	X	91667142	91667144	+	Intron	DEL	GAG	-	-			2011-2312:2012-361-T	g.chrX:91667142_91667144delGAG	uc004efk.1	+						PCDH11X_uc004efl.1_Intron|PCDH11X_uc004efo.1_Intron|PCDH11X_uc010nmv.1_Intron|PCDH11X_uc004efm.1_Intron|PCDH11X_uc004efn.1_Intron	NM_032968	NP_116750
AGRN	375790	broad.mit.edu	37	1	965124	965126	+	Intron	DEL	GCG	-	-	rs71574344		2011-2313:2012-360-T	g.chr1:965124_965126delGCG	uc001ack.1	+							NM_198576	NP_940978
LGR6	59352	broad.mit.edu	37	1	202174447	202174450	+	Intron	DEL	CAAA	-	-			2011-2313:2012-360-T	g.chr1:202174447_202174450delCAAA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
KSR2	283455	broad.mit.edu	37	12	118232219	118232220	+	Intron	DEL	TG	-	-			2011-2313:2012-360-T	g.chr12:118232219_118232220delTG	uc001two.2	-							NM_173598	NP_775869
TMEM120B	144404	broad.mit.edu	37	12	122185417	122185418	+	Intron	INS	-	CA	CA			2011-2313:2012-360-T	g.chr12:122185417_122185418insCA	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
COL4A2	1284	broad.mit.edu	37	13	111007705	111007706	+	Intron	INS	-	T	T			2011-2313:2012-360-T	g.chr13:111007705_111007706insT	uc001vqx.2	+							NM_001846	NP_001837
COL4A2	1284	broad.mit.edu	37	13	111007732	111007733	+	Intron	INS	-	TGT	TGT	rs68075017		2011-2313:2012-360-T	g.chr13:111007732_111007733insTGT	uc001vqx.2	+							NM_001846	NP_001837
F7	2155	broad.mit.edu	37	13	113762882	113762883	+	Intron	INS	-	T	T	rs76788797		2011-2313:2012-360-T	g.chr13:113762882_113762883insT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
LMF1	64788	broad.mit.edu	37	16	1000029	1000030	+	Intron	DEL	CC	-	-			2011-2313:2012-360-T	g.chr16:1000029_1000030delCC	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000031	1000032	+	Intron	INS	-	G	G			2011-2313:2012-360-T	g.chr16:1000031_1000032insG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
RPH3AL	9501	broad.mit.edu	37	17	136731	136732	+	Intron	DEL	CT	-	-	rs71863097		2011-2313:2012-360-T	g.chr17:136731_136732delCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
NTN1	9423	broad.mit.edu	37	17	9132442	9132443	+	Intron	DEL	AC	-	-			2011-2313:2012-360-T	g.chr17:9132442_9132443delAC	uc002glw.3	+							NM_004822	NP_004813
MED16	10025	broad.mit.edu	37	19	877952	877963	+	Intron	DEL	CCAGCCCCAGCC	-	-			2011-2313:2012-360-T	g.chr19:877952_877963delCCAGCCCCAGCC	uc002lqd.1	-						MED16_uc010drw.1_Intron|MED16_uc002lqe.2_Intron|MED16_uc002lqf.2_Intron|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Intron|MED16_uc010xfx.1_Intron|MED16_uc010xfy.1_Intron	NM_005481	NP_005472
SPPL2B	56928	broad.mit.edu	37	19	2336897	2336898	+	Intron	INS	-	GT	GT	rs74597536;rs150473920		2011-2313:2012-360-T	g.chr19:2336897_2336898insGT	uc002lvs.2	+						SPPL2B_uc010dsw.1_Intron|SPPL2B_uc010dsy.1_Intron|SPPL2B_uc010dsz.1_Intron|SPPL2B_uc002lvr.2_Intron|SPPL2B_uc010dta.1_5'Flank|SPPL2B_uc002lvu.2_5'Flank	NM_152988	NP_694533
TSSC1	7260	broad.mit.edu	37	2	3298684	3298685	+	Intron	INS	-	CA	CA	rs149607117;rs34509649	by1000genomes	2011-2313:2012-360-T	g.chr2:3298684_3298685insCA	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
FAM179A	165186	broad.mit.edu	37	2	29227753	29227758	+	Intron	DEL	TGTACA	-	-	rs149344765	by1000genomes	2011-2313:2012-360-T	g.chr2:29227753_29227758delTGTACA	uc010ezl.2	+						FAM179A_uc010ymm.1_Intron	NM_199280	NP_954974
RMND5A	64795	broad.mit.edu	37	2	87623326	87623327	+	Intron	INS	-	A	A			2011-2313:2012-360-T	g.chr2:87623326_87623327insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87623776	87623776	+	Intron	DEL	A	-	-			2011-2313:2012-360-T	g.chr2:87623776delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87623885	87623886	+	Intron	INS	-	C	C			2011-2313:2012-360-T	g.chr2:87623885_87623886insC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643656	87643659	+	Intron	DEL	CAGT	-	-			2011-2313:2012-360-T	g.chr2:87643656_87643659delCAGT	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644146	87644147	+	Intron	INS	-	A	A			2011-2313:2012-360-T	g.chr2:87644146_87644147insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87719726	87719726	+	Intron	DEL	C	-	-			2011-2313:2012-360-T	g.chr2:87719726delC	uc002srs.3	+								
RAB3GAP1	22930	broad.mit.edu	37	2	135875222	135875224	+	Intron	DEL	CTG	-	-			2011-2313:2012-360-T	g.chr2:135875222_135875224delCTG	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
AGXT	189	broad.mit.edu	37	2	241811710	241811712	+	Intron	DEL	AGG	-	-			2011-2313:2012-360-T	g.chr2:241811710_241811712delAGG	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
BMP7	655	broad.mit.edu	37	20	55794255	55794257	+	Intron	DEL	TGG	-	-			2011-2313:2012-360-T	g.chr20:55794255_55794257delTGG	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
TTLL8	164714	broad.mit.edu	37	22	50467662	50467663	+	Intron	INS	-	C	C			2011-2313:2012-360-T	g.chr22:50467662_50467663insC	uc011ark.1	-							NM_001080447	NP_001073916
RGS12	6002	broad.mit.edu	37	4	3377188	3377188	+	Intron	DEL	T	-	-			2011-2313:2012-360-T	g.chr4:3377188delT	uc003ggw.2	+						RGS12_uc003ggu.2_Intron|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_Intron|RGS12_uc003ggv.2_Intron|RGS12_uc003ggy.1_Intron|RGS12_uc010ict.1_Intron|RGS12_uc003ggz.2_Intron	NM_198229	NP_937872
SORCS2	57537	broad.mit.edu	37	4	7726207	7726208	+	Intron	INS	-	TGA	TGA	rs147164731		2011-2313:2012-360-T	g.chr4:7726207_7726208insTGA	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
CEP72	55722	broad.mit.edu	37	5	650097	650098	+	Intron	DEL	TG	-	-			2011-2313:2012-360-T	g.chr5:650097_650098delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650551	650551	+	Intron	DEL	G	-	-			2011-2313:2012-360-T	g.chr5:650551delG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1072619	1072619	+	Intron	DEL	C	-	-			2011-2313:2012-360-T	g.chr5:1072619delC	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072765	1072765	+	Intron	DEL	C	-	-			2011-2313:2012-360-T	g.chr5:1072765delC	uc003jbu.2	-							NM_006598	NP_006589
TRIO	7204	broad.mit.edu	37	5	14403329	14403331	+	Intron	DEL	GTG	-	-			2011-2313:2012-360-T	g.chr5:14403329_14403331delGTG	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
THBS2	7058	broad.mit.edu	37	6	169642693	169642694	+	Intron	INS	-	C	C			2011-2313:2012-360-T	g.chr6:169642693_169642694insC	uc003qwt.2	-							NM_003247	NP_003238
PRKAR1B	5575	broad.mit.edu	37	7	628334	628336	+	Intron	DEL	TGA	-	-	rs150721644	by1000genomes	2011-2313:2012-360-T	g.chr7:628334_628336delTGA	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
PTPRN2	5799	broad.mit.edu	37	7	157582722	157582723	+	Intron	INS	-	T	T			2011-2313:2012-360-T	g.chr7:157582722_157582723insT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158066225	158066226	+	Intron	INS	-	GC	GC			2011-2313:2012-360-T	g.chr7:158066225_158066226insGC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158129924	158129925	+	Intron	DEL	CA	-	-	rs66592921		2011-2313:2012-360-T	g.chr7:158129924_158129925delCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158316413	158316414	+	Intron	INS	-	GTC	GTC			2011-2313:2012-360-T	g.chr7:158316413_158316414insGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TRAPPC9	83696	broad.mit.edu	37	8	141167309	141167309	+	Intron	DEL	T	-	-			2011-2313:2012-360-T	g.chr8:141167309delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
TRAPPC9	83696	broad.mit.edu	37	8	141167330	141167330	+	Intron	DEL	T	-	-			2011-2313:2012-360-T	g.chr8:141167330delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
HEATR7A	727957	broad.mit.edu	37	8	145288431	145288432	+	Intron	INS	-	C	C	rs11435979;rs66838432		2011-2313:2012-360-T	g.chr8:145288431_145288432insC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
ARHGAP39	80728	broad.mit.edu	37	8	145913107	145913108	+	5'Flank	INS	-	C	C			2011-2313:2012-360-T	g.chr8:145913107_145913108insC	uc011llk.1	-							NM_025251	NP_079527
SEMA4D	10507	broad.mit.edu	37	9	91986360	91986360	+	Intron	DEL	G	-	-			2011-2313:2012-360-T	g.chr9:91986360delG	uc011ltm.1	-						SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqm.2_5'Flank	NM_001142287	NP_001135759
EHMT1	79813	broad.mit.edu	37	9	140610726	140610728	+	Intron	DEL	GTG	-	-			2011-2313:2012-360-T	g.chr9:140610726_140610728delGTG	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
EHMT1	79813	broad.mit.edu	37	9	140615677	140615677	+	Intron	DEL	C	-	-			2011-2313:2012-360-T	g.chr9:140615677delC	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
PPP2R3B	28227	broad.mit.edu	37	X	299263	299264	+	Intron	INS	-	C	C			2011-2313:2012-360-T	g.chrX:299263_299264insC	uc004cpg.2	-						PPP2R3B_uc004cpf.2_Intron	NM_013239	NP_037371
OPHN1	4983	broad.mit.edu	37	X	67459062	67459062	+	Intron	DEL	G	-	-	rs67901004		2011-2313:2012-360-T	g.chrX:67459062delG	uc004dww.3	-						OPHN1_uc011mpg.1_Intron|OPHN1_uc004dwx.2_Intron	NM_002547	NP_002538
AGRN	375790	broad.mit.edu	37	1	965088	965089	+	Intron	INS	-	CAG	CAG			2011-2314:2012-359-T	g.chr1:965088_965089insCAG	uc001ack.1	+							NM_198576	NP_940978
SCNN1D	6339	broad.mit.edu	37	1	1223817	1223818	+	Intron	INS	-	CC	CC			2011-2314:2012-359-T	g.chr1:1223817_1223818insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
LGR6	59352	broad.mit.edu	37	1	202174977	202174978	+	Intron	INS	-	AC	AC	rs142563752;rs148939225		2011-2314:2012-359-T	g.chr1:202174977_202174978insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
SYT2	127833	broad.mit.edu	37	1	202594066	202594067	+	Intron	INS	-	G	G	rs148638021		2011-2314:2012-359-T	g.chr1:202594066_202594067insG	uc001gye.2	-						SYT2_uc010pqb.1_Intron|SYT2_uc009xaf.2_Intron	NM_001136504	NP_001129976
SYT2	127833	broad.mit.edu	37	1	202594067	202594068	+	Intron	INS	-	C	C	rs148638021		2011-2314:2012-359-T	g.chr1:202594067_202594068insC	uc001gye.2	-						SYT2_uc010pqb.1_Intron|SYT2_uc009xaf.2_Intron	NM_001136504	NP_001129976
ODF3	113746	broad.mit.edu	37	11	196406	196407	+	5'Flank	INS	-	A	A			2011-2314:2012-359-T	g.chr11:196406_196407insA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
NELL1	4745	broad.mit.edu	37	11	21456992	21456992	+	Intron	DEL	T	-	-	rs71443786		2011-2314:2012-359-T	g.chr11:21456992delT	uc001mqe.2	+						NELL1_uc001mqf.2_Intron|NELL1_uc009yid.2_Intron|NELL1_uc010rdo.1_Intron|NELL1_uc010rdp.1_Intron|NELL1_uc001mqg.2_Intron|NELL1_uc001mqh.2_Intron	NM_006157	NP_006148
CD5	921	broad.mit.edu	37	11	60884011	60884012	+	Intron	INS	-	CA	CA			2011-2314:2012-359-T	g.chr11:60884011_60884012insCA	uc009ynk.2	+							NM_014207	NP_055022
TPCN2	219931	broad.mit.edu	37	11	68832450	68832453	+	Intron	DEL	TGTC	-	-			2011-2314:2012-359-T	g.chr11:68832450_68832453delTGTC	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
B4GALNT3	283358	broad.mit.edu	37	12	620619	620621	+	Intron	DEL	CTT	-	-	rs138069229		2011-2314:2012-359-T	g.chr12:620619_620621delCTT	uc001qii.1	+							NM_173593	NP_775864
B4GALNT3	283358	broad.mit.edu	37	12	621000	621002	+	Intron	DEL	CTT	-	-			2011-2314:2012-359-T	g.chr12:621000_621002delCTT	uc001qii.1	+							NM_173593	NP_775864
PTPN6	5777	broad.mit.edu	37	12	7069423	7069423	+	Intron	DEL	G	-	-			2011-2314:2012-359-T	g.chr12:7069423delG	uc001qsb.2	+						PTPN6_uc001qsa.1_Intron|PTPN6_uc010sfr.1_Intron|PTPN6_uc009zfl.1_Intron|PTPN6_uc010sfs.1_Intron	NM_002831	NP_002822
TMEM132D	121256	broad.mit.edu	37	12	130232385	130232385	+	Intron	DEL	A	-	-			2011-2314:2012-359-T	g.chr12:130232385delA	uc009zyl.1	-							NM_133448	NP_597705
GPR133	283383	broad.mit.edu	37	12	131530916	131530916	+	Intron	DEL	C	-	-	rs66746307		2011-2314:2012-359-T	g.chr12:131530916delC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
GPR133	283383	broad.mit.edu	37	12	131530932	131530933	+	Intron	INS	-	C	C	rs66640727		2011-2314:2012-359-T	g.chr12:131530932_131530933insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
GPR133	283383	broad.mit.edu	37	12	131530933	131530934	+	Intron	INS	-	C	C	rs66640727		2011-2314:2012-359-T	g.chr12:131530933_131530934insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
IL17D	53342	broad.mit.edu	37	13	21292828	21292829	+	Intron	INS	-	ACAC	ACAC	rs138583770		2011-2314:2012-359-T	g.chr13:21292828_21292829insACAC	uc001unm.2	+							NM_138284	NP_612141
ATP11A	23250	broad.mit.edu	37	13	113433031	113433032	+	Intron	INS	-	GAG	GAG	rs10645187;rs67803605		2011-2314:2012-359-T	g.chr13:113433031_113433032insGAG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
F7	2155	broad.mit.edu	37	13	113766366	113766367	+	Intron	INS	-	CT	CT			2011-2314:2012-359-T	g.chr13:113766366_113766367insCT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
FAM70B	348013	broad.mit.edu	37	13	114478037	114478038	+	Intron	INS	-	CA	CA	rs75434298		2011-2314:2012-359-T	g.chr13:114478037_114478038insCA	uc001vuh.2	+							NM_182614	NP_872420
SLCO3A1	28232	broad.mit.edu	37	15	92568679	92568681	+	Intron	DEL	TGC	-	-			2011-2314:2012-359-T	g.chr15:92568679_92568681delTGC	uc002bqx.2	+						SLCO3A1_uc002bqy.2_Intron|SLCO3A1_uc010boc.1_Intron|SLCO3A1_uc002bqz.1_Intron	NM_013272	NP_037404
PIGQ	9091	broad.mit.edu	37	16	621210	621211	+	Intron	INS	-	TG	TG	rs149135121	by1000genomes	2011-2314:2012-359-T	g.chr16:621210_621211insTG	uc002cho.2	+						PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_Intron|PIGQ_uc002chn.2_Intron|PIGQ_uc010uui.1_5'Flank	NM_148920	NP_683721
LMF1	64788	broad.mit.edu	37	16	908309	908309	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr16:908309delC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	999935	999936	+	Intron	INS	-	AC	AC	rs71142782		2011-2314:2012-359-T	g.chr16:999935_999936insAC	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
DPEP1	1800	broad.mit.edu	37	16	89701066	89701066	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr16:89701066delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701433	89701433	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr16:89701433delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701571	89701572	+	Intron	INS	-	T	T			2011-2314:2012-359-T	g.chr16:89701571_89701572insT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
NXN	64359	broad.mit.edu	37	17	852064	852064	+	Intron	DEL	G	-	-	rs9747533	by1000genomes	2011-2314:2012-359-T	g.chr17:852064delG	uc002fsa.2	-							NM_022463	NP_071908
TIMM22	29928	broad.mit.edu	37	17	897498	897498	+	5'Flank	DEL	C	-	-			2011-2314:2012-359-T	g.chr17:897498delC	uc002fsc.2	+							NM_013337	NP_037469
ITGAE	3682	broad.mit.edu	37	17	3699346	3699347	+	Intron	DEL	TG	-	-	rs140432337		2011-2314:2012-359-T	g.chr17:3699346_3699347delTG	uc002fwo.3	-							NM_002208	NP_002199
CLEC10A	10462	broad.mit.edu	37	17	6980639	6980639	+	Intron	DEL	A	-	-	rs68032848		2011-2314:2012-359-T	g.chr17:6980639delA	uc002gek.2	-						CLEC10A_uc002gej.2_Intron|CLEC10A_uc002gel.2_Intron|CLEC10A_uc010clv.1_Intron	NM_182906	NP_878910
AATK	9625	broad.mit.edu	37	17	79112383	79112384	+	Intron	DEL	CA	-	-			2011-2314:2012-359-T	g.chr17:79112383_79112384delCA	uc010dia.2	-							NM_001080395	NP_001073864
BAHCC1	57597	broad.mit.edu	37	17	79399274	79399275	+	Intron	INS	-	G	G			2011-2314:2012-359-T	g.chr17:79399274_79399275insG	uc002kaf.2	+							NM_001080519	NP_001073988
BAHCC1	57597	broad.mit.edu	37	17	79399284	79399287	+	Intron	DEL	TGGT	-	-			2011-2314:2012-359-T	g.chr17:79399284_79399287delTGGT	uc002kaf.2	+							NM_001080519	NP_001073988
ZNF536	9745	broad.mit.edu	37	19	30925826	30925827	+	Intron	INS	-	TGA	TGA			2011-2314:2012-359-T	g.chr19:30925826_30925827insTGA	uc002nsu.1	+						ZNF536_uc010edd.1_Intron	NM_014717	NP_055532
SH3YL1	26751	broad.mit.edu	37	2	236216	236218	+	Intron	DEL	GCA	-	-			2011-2314:2012-359-T	g.chr2:236216_236218delGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
RMND5A	64795	broad.mit.edu	37	2	87623866	87623867	+	Intron	INS	-	A	A			2011-2314:2012-359-T	g.chr2:87623866_87623867insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87625480	87625480	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr2:87625480delC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87633950	87633950	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr2:87633950delC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641769	87641770	+	Intron	INS	-	A	A			2011-2314:2012-359-T	g.chr2:87641769_87641770insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87642049	87642049	+	Intron	DEL	G	-	-			2011-2314:2012-359-T	g.chr2:87642049delG	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644146	87644147	+	Intron	INS	-	A	A			2011-2314:2012-359-T	g.chr2:87644146_87644147insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87719726	87719726	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr2:87719726delC	uc002srs.3	+								
SPAG16	79582	broad.mit.edu	37	2	214272618	214272621	+	Intron	DEL	AGAC	-	-	rs138394422		2011-2314:2012-359-T	g.chr2:214272618_214272621delAGAC	uc002veq.2	+						SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Intron|SPAG16_uc010zjk.1_Intron	NM_024532	NP_078808
GPR35	2859	broad.mit.edu	37	2	241565247	241565247	+	Intron	DEL	T	-	-	rs66475788		2011-2314:2012-359-T	g.chr2:241565247delT	uc010fzh.1	+						GPR35_uc010fzi.1_Intron	NM_005301	NP_005292
GAL3ST2	64090	broad.mit.edu	37	2	242714061	242714061	+	5'Flank	DEL	G	-	-	rs72031259		2011-2314:2012-359-T	g.chr2:242714061delG	uc002wcj.1	+							NM_022134	NP_071417
GAL3ST2	64090	broad.mit.edu	37	2	242714099	242714099	+	5'Flank	DEL	C	-	-			2011-2314:2012-359-T	g.chr2:242714099delC	uc002wcj.1	+							NM_022134	NP_071417
GAL3ST2	64090	broad.mit.edu	37	2	242714119	242714120	+	5'Flank	INS	-	C	C			2011-2314:2012-359-T	g.chr2:242714119_242714120insC	uc002wcj.1	+							NM_022134	NP_071417
GAL3ST2	64090	broad.mit.edu	37	2	242714129	242714130	+	5'Flank	INS	-	C	C			2011-2314:2012-359-T	g.chr2:242714129_242714130insC	uc002wcj.1	+							NM_022134	NP_071417
SRC	6714	broad.mit.edu	37	20	35990266	35990273	+	Intron	DEL	GTAGAGAT	-	-	rs72271164		2011-2314:2012-359-T	g.chr20:35990266_35990273delGTAGAGAT	uc002xgx.2	+						SRC_uc002xgy.2_Intron	NM_005417	NP_005408
TAF4	6874	broad.mit.edu	37	20	60557700	60557701	+	Intron	INS	-	C	C	rs147634297	by1000genomes	2011-2314:2012-359-T	g.chr20:60557700_60557701insC	uc002ybs.2	-							NM_003185	NP_003176
PDE9A	5152	broad.mit.edu	37	21	44189604	44189605	+	Intron	INS	-	T	T	rs143819105		2011-2314:2012-359-T	g.chr21:44189604_44189605insT	uc002zbm.2	+						PDE9A_uc002zbn.2_Intron|PDE9A_uc002zbo.2_Intron|PDE9A_uc002zbp.2_Intron|PDE9A_uc002zbq.2_Intron|PDE9A_uc002zbs.2_Intron|PDE9A_uc002zbr.2_Intron|PDE9A_uc002zbt.2_Intron|PDE9A_uc002zbu.2_Intron|PDE9A_uc002zbv.2_Intron|PDE9A_uc002zbw.2_Intron|PDE9A_uc002zbx.2_Intron|PDE9A_uc002zby.2_Intron|PDE9A_uc002zbz.2_Intron|PDE9A_uc002zca.2_Intron|PDE9A_uc002zcb.2_Intron|PDE9A_uc002zcc.2_Intron|PDE9A_uc002zcd.2_Intron|PDE9A_uc002zce.2_Intron|PDE9A_uc002zcf.2_Intron|PDE9A_uc002zcg.2_Intron|PDE9A_uc002zch.2_Intron	NM_002606	NP_002597
CECR2	27443	broad.mit.edu	37	22	17911099	17911100	+	Intron	INS	-	T	T	rs139517696	by1000genomes	2011-2314:2012-359-T	g.chr22:17911099_17911100insT	uc010gqv.1	+							NM_031413	NP_113601
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45197085	45197086	+	Intron	INS	-	G	G			2011-2314:2012-359-T	g.chr22:45197085_45197086insG	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45197183	45197184	+	Intron	INS	-	A	A	rs71188487		2011-2314:2012-359-T	g.chr22:45197183_45197184insA	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
PHF21B	112885	broad.mit.edu	37	22	45280109	45280111	+	Intron	DEL	ACT	-	-	rs117622017	by1000genomes	2011-2314:2012-359-T	g.chr22:45280109_45280111delACT	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
TBC1D22A	25771	broad.mit.edu	37	22	47554663	47554664	+	Intron	DEL	AC	-	-			2011-2314:2012-359-T	g.chr22:47554663_47554664delAC	uc003bib.2	+						TBC1D22A_uc010haf.2_Intron|TBC1D22A_uc003bic.2_Intron|TBC1D22A_uc003bie.2_Intron|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_Intron|TBC1D22A_uc003bif.2_Intron	NM_014346	NP_055161
CTNNB1	1499	broad.mit.edu	37	3	41268677	41268678	+	Intron	DEL	AT	-	-			2011-2314:2012-359-T	g.chr3:41268677_41268678delAT	uc010hia.1	+						CTNNB1_uc003ckp.2_Intron|CTNNB1_uc003ckq.2_Intron|CTNNB1_uc003ckr.2_Intron|CTNNB1_uc011azf.1_Intron|CTNNB1_uc011azg.1_Intron|uc010hib.1_5'Flank	NM_001904	NP_001895
NISCH	11188	broad.mit.edu	37	3	52526843	52526848	+	3'UTR	DEL	TGTTGC	-	-	rs72297597		2011-2314:2012-359-T	g.chr3:52526843_52526848delTGTTGC	uc011beg.1	+	22					NISCH_uc003ded.3_3'UTR|NISCH_uc003dee.3_3'UTR|NISCH_uc003deg.1_3'UTR|NISCH_uc003deh.3_3'UTR|STAB1_uc003dei.1_5'Flank|STAB1_uc003dej.2_5'Flank	NM_007184	NP_009115
CEP72	55722	broad.mit.edu	37	5	650057	650058	+	Intron	DEL	TG	-	-			2011-2314:2012-359-T	g.chr5:650057_650058delTG	uc003jbf.2	+							NM_018140	NP_060610
TPPP	11076	broad.mit.edu	37	5	692013	692013	+	Intron	DEL	A	-	-			2011-2314:2012-359-T	g.chr5:692013delA	uc003jbh.3	-							NM_007030	NP_008961
SLC12A7	10723	broad.mit.edu	37	5	1071352	1071352	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr5:1071352delC	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1071374	1071375	+	Intron	INS	-	G	G			2011-2314:2012-359-T	g.chr5:1071374_1071375insG	uc003jbu.2	-							NM_006598	NP_006589
SLIT3	6586	broad.mit.edu	37	5	168173297	168173302	+	Intron	DEL	ATGTGG	-	-			2011-2314:2012-359-T	g.chr5:168173297_168173302delATGTGG	uc003mab.2	-						SLIT3_uc010jjg.2_Intron	NM_003062	NP_003053
NSD1	64324	broad.mit.edu	37	5	176684218	176684218	+	Intron	DEL	C	-	-	rs151062025	by1000genomes	2011-2314:2012-359-T	g.chr5:176684218delC	uc003mfr.3	+						NSD1_uc003mft.3_Intron|NSD1_uc003mfs.1_Intron|NSD1_uc011dfx.1_Intron	NM_022455	NP_071900
BPHL	670	broad.mit.edu	37	6	3145416	3145416	+	Intron	DEL	G	-	-	rs112208778		2011-2314:2012-359-T	g.chr6:3145416delG	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
BPHL	670	broad.mit.edu	37	6	3146132	3146133	+	Intron	INS	-	G	G			2011-2314:2012-359-T	g.chr6:3146132_3146133insG	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
RNASET2	8635	broad.mit.edu	37	6	167368870	167368871	+	Intron	DEL	CA	-	-	rs140477428	by1000genomes	2011-2314:2012-359-T	g.chr6:167368870_167368871delCA	uc003qve.2	-						RNASET2_uc003qvh.2_Intron|RNASET2_uc003qvf.2_Intron|RNASET2_uc003qvg.2_Intron|RNASET2_uc003qvi.1_Intron	NM_003730	NP_003721
THBS2	7058	broad.mit.edu	37	6	169642909	169642909	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr6:169642909delC	uc003qwt.2	-							NM_003247	NP_003238
THBS2	7058	broad.mit.edu	37	6	169643206	169643206	+	Intron	DEL	C	-	-			2011-2314:2012-359-T	g.chr6:169643206delC	uc003qwt.2	-							NM_003247	NP_003238
ADAP1	11033	broad.mit.edu	37	7	982070	982073	+	Intron	DEL	AGGG	-	-			2011-2314:2012-359-T	g.chr7:982070_982073delAGGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982905	982908	+	Intron	DEL	AGGG	-	-			2011-2314:2012-359-T	g.chr7:982905_982908delAGGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf23	79161	broad.mit.edu	37	7	86839066	86839067	+	Intron	INS	-	AGTG	AGTG			2011-2314:2012-359-T	g.chr7:86839066_86839067insAGTG	uc003uio.2	-							NM_024315	NP_077291
C7orf23	79161	broad.mit.edu	37	7	86839074	86839075	+	Intron	INS	-	AC	AC			2011-2314:2012-359-T	g.chr7:86839074_86839075insAC	uc003uio.2	-							NM_024315	NP_077291
CUX1	1523	broad.mit.edu	37	7	101860106	101860107	+	Intron	DEL	CA	-	-	rs72011907		2011-2314:2012-359-T	g.chr7:101860106_101860107delCA	uc003uyx.3	+						CUX1_uc003uys.3_Intron|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530
DPP6	1804	broad.mit.edu	37	7	154675820	154675821	+	Intron	INS	-	CA	CA			2011-2314:2012-359-T	g.chr7:154675820_154675821insCA	uc003wlk.2	+						DPP6_uc003wli.2_Intron|DPP6_uc003wlm.2_Intron|DPP6_uc011kvq.1_Intron	NM_130797	NP_570629
DPP6	1804	broad.mit.edu	37	7	154675838	154675839	+	Intron	DEL	AT	-	-			2011-2314:2012-359-T	g.chr7:154675838_154675839delAT	uc003wlk.2	+						DPP6_uc003wli.2_Intron|DPP6_uc003wlm.2_Intron|DPP6_uc011kvq.1_Intron	NM_130797	NP_570629
PTPRN2	5799	broad.mit.edu	37	7	157878143	157878144	+	Intron	DEL	GG	-	-			2011-2314:2012-359-T	g.chr7:157878143_157878144delGG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TRAPPC9	83696	broad.mit.edu	37	8	141120665	141120665	+	Intron	DEL	T	-	-			2011-2314:2012-359-T	g.chr8:141120665delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
TRAPPC9	83696	broad.mit.edu	37	8	141167267	141167267	+	Intron	DEL	T	-	-			2011-2314:2012-359-T	g.chr8:141167267delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
NUP214	8021	broad.mit.edu	37	9	134014667	134014667	+	Splice_Site	DEL	G	-	-			2011-2314:2012-359-T	g.chr9:134014667delG	uc004cag.2	+	10	1117	c.1006_splice	c.e10-1	p.I336_splice	NUP214_uc004cah.2_Splice_Site_p.I336_splice|NUP214_uc004caf.1_Splice_Site_p.I336_splice	NM_005085	NP_005076
TTF1	7270	broad.mit.edu	37	9	135252957	135252958	+	Intron	INS	-	TGCA	TGCA			2011-2314:2012-359-T	g.chr9:135252957_135252958insTGCA	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTF1	7270	broad.mit.edu	37	9	135252964	135252964	+	Intron	DEL	T	-	-			2011-2314:2012-359-T	g.chr9:135252964delT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTF1	7270	broad.mit.edu	37	9	135252969	135252970	+	Intron	INS	-	A	A			2011-2314:2012-359-T	g.chr9:135252969_135252970insA	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTF1	7270	broad.mit.edu	37	9	135253006	135253007	+	Intron	DEL	GT	-	-			2011-2314:2012-359-T	g.chr9:135253006_135253007delGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
RALGDS	5900	broad.mit.edu	37	9	135999297	135999298	+	5'Flank	DEL	AC	-	-	rs139270051		2011-2314:2012-359-T	g.chr9:135999297_135999298delAC	uc004cco.2	-						RALGDS_uc004ccp.2_5'Flank|RALGDS_uc004ccq.2_5'Flank|RALGDS_uc004ccr.2_Intron|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Intron|RALGDS_uc011mcw.1_Intron	NM_006266	NP_006257
NACC2	138151	broad.mit.edu	37	9	138916001	138916002	+	Intron	INS	-	GT	GT	rs147606119;rs71507095	by1000genomes	2011-2314:2012-359-T	g.chr9:138916001_138916002insGT	uc004cgw.2	-						NACC2_uc010nbh.2_Intron	NM_144653	NP_653254
EHMT1	79813	broad.mit.edu	37	9	140610869	140610871	+	Intron	DEL	TGT	-	-	rs3125773		2011-2314:2012-359-T	g.chr9:140610869_140610871delTGT	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
EHMT1	79813	broad.mit.edu	37	9	140615774	140615775	+	Intron	INS	-	C	C	rs145983596	by1000genomes	2011-2314:2012-359-T	g.chr9:140615774_140615775insC	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
PTCHD2	57540	broad.mit.edu	37	1	11582616	11582617	+	Intron	INS	-	A	A	rs35661522		2011-2315:2012-358-T	g.chr1:11582616_11582617insA	uc001ash.3	+						PTCHD2_uc001asi.1_Intron	NM_020780	NP_065831
PTCHD2	57540	broad.mit.edu	37	1	11582620	11582620	+	Intron	DEL	G	-	-			2011-2315:2012-358-T	g.chr1:11582620delG	uc001ash.3	+						PTCHD2_uc001asi.1_Intron	NM_020780	NP_065831
THEM5	284486	broad.mit.edu	37	1	151819757	151819757	+	3'UTR	DEL	G	-	-			2011-2315:2012-358-T	g.chr1:151819757delG	uc009wnd.2	-	6						NM_182578	NP_872384
ADAM12	8038	broad.mit.edu	37	10	127846860	127846861	+	Intron	DEL	GA	-	-			2011-2315:2012-358-T	g.chr10:127846860_127846861delGA	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
MUC5B	727897	broad.mit.edu	37	11	1142289	1142298	+	5'Flank	DEL	TGTGTGTGCT	-	-	rs149019131		2011-2315:2012-358-T	g.chr11:1142289_1142298delTGTGTGTGCT	uc009ycr.1	+							NM_017511	NP_059981
TPCN2	219931	broad.mit.edu	37	11	68832450	68832453	+	Intron	DEL	TGTC	-	-			2011-2315:2012-358-T	g.chr11:68832450_68832453delTGTC	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
FAT3	120114	broad.mit.edu	37	11	92438785	92438786	+	Intron	DEL	GT	-	-			2011-2315:2012-358-T	g.chr11:92438785_92438786delGT	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438797	92438798	+	Intron	INS	-	G	G			2011-2315:2012-358-T	g.chr11:92438797_92438798insG	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438828	92438829	+	Intron	INS	-	G	G			2011-2315:2012-358-T	g.chr11:92438828_92438829insG	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438837	92438839	+	Intron	DEL	GTA	-	-	rs150857034		2011-2315:2012-358-T	g.chr11:92438837_92438839delGTA	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438864	92438865	+	Intron	INS	-	A	A	rs116597125	by1000genomes	2011-2315:2012-358-T	g.chr11:92438864_92438865insA	uc001pdj.3	+							NM_001008781	NP_001008781
NINJ2	4815	broad.mit.edu	37	12	691735	691738	+	Intron	DEL	GCAG	-	-			2011-2315:2012-358-T	g.chr12:691735_691738delGCAG	uc001qil.2	-						NINJ2_uc010sdr.1_Intron|NINJ2_uc010sds.1_Intron	NM_016533	NP_057617
LRRK2	120892	broad.mit.edu	37	12	40699523	40699523	+	Intron	DEL	T	-	-			2011-2315:2012-358-T	g.chr12:40699523delT	uc001rmg.3	+						LRRK2_uc009zjw.2_Intron|LRRK2_uc001rmi.2_Intron	NM_198578	NP_940980
RB1	5925	broad.mit.edu	37	13	49034077	49034078	+	Intron	INS	-	T	T	rs71916108;rs66565903		2011-2315:2012-358-T	g.chr13:49034077_49034078insT	uc001vcb.2	+							NM_000321	NP_000312
C13orf35	400165	broad.mit.edu	37	13	113299698	113299706	+	5'Flank	DEL	GAGGACAGT	-	-	rs67835733;rs71131501;rs117360698;rs1315072		2011-2315:2012-358-T	g.chr13:113299698_113299706delGAGGACAGT	uc001vsh.1	+							NM_207440	NP_997323
PIGQ	9091	broad.mit.edu	37	16	621259	621260	+	Intron	DEL	TG	-	-	rs3074441		2011-2315:2012-358-T	g.chr16:621259_621260delTG	uc002cho.2	+						PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_Intron|PIGQ_uc002chn.2_Intron|PIGQ_uc010uui.1_5'Flank	NM_148920	NP_683721
LMF1	64788	broad.mit.edu	37	16	1000029	1000030	+	Intron	DEL	CC	-	-			2011-2315:2012-358-T	g.chr16:1000029_1000030delCC	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000031	1000032	+	Intron	INS	-	G	G			2011-2315:2012-358-T	g.chr16:1000031_1000032insG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
MAPK8IP3	23162	broad.mit.edu	37	16	1786081	1786082	+	Intron	DEL	GA	-	-			2011-2315:2012-358-T	g.chr16:1786081_1786082delGA	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
MAPK8IP3	23162	broad.mit.edu	37	16	1788852	1788853	+	Intron	DEL	GT	-	-			2011-2315:2012-358-T	g.chr16:1788852_1788853delGT	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
RPH3AL	9501	broad.mit.edu	37	17	138168	138169	+	Intron	INS	-	CT	CT			2011-2315:2012-358-T	g.chr17:138168_138169insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
RPH3AL	9501	broad.mit.edu	37	17	165326	165326	+	Intron	DEL	C	-	-	rs66510420		2011-2315:2012-358-T	g.chr17:165326delC	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
PQLC1	80148	broad.mit.edu	37	18	77680191	77680191	+	Intron	DEL	A	-	-	rs10711981		2011-2315:2012-358-T	g.chr18:77680191delA	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
KDM4B	23030	broad.mit.edu	37	19	5020148	5020149	+	Intron	INS	-	CA	CA			2011-2315:2012-358-T	g.chr19:5020148_5020149insCA	uc002mbq.3	+						KDM4B_uc010xil.1_Intron|KDM4B_uc010xim.1_Intron	NM_015015	NP_055830
RMND5A	64795	broad.mit.edu	37	2	87633950	87633950	+	Intron	DEL	C	-	-			2011-2315:2012-358-T	g.chr2:87633950delC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641749	87641750	+	Intron	INS	-	A	A	rs145264498		2011-2315:2012-358-T	g.chr2:87641749_87641750insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643040	87643048	+	Intron	DEL	AGTCAGCCT	-	-			2011-2315:2012-358-T	g.chr2:87643040_87643048delAGTCAGCCT	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87719781	87719788	+	Intron	DEL	AGCCAGAT	-	-	rs143937270	by1000genomes	2011-2315:2012-358-T	g.chr2:87719781_87719788delAGCCAGAT	uc002srs.3	+								
SPAG16	79582	broad.mit.edu	37	2	214272618	214272621	+	Intron	DEL	AGAC	-	-	rs138394422		2011-2315:2012-358-T	g.chr2:214272618_214272621delAGAC	uc002veq.2	+						SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Intron|SPAG16_uc010zjk.1_Intron	NM_024532	NP_078808
SGPP2	130367	broad.mit.edu	37	2	223421575	223421575	+	Intron	DEL	T	-	-			2011-2315:2012-358-T	g.chr2:223421575delT	uc010zlo.1	+						SGPP2_uc010zlp.1_Intron	NM_152386	NP_689599
CUL3	8452	broad.mit.edu	37	2	225368380	225368380	+	Frame_Shift_Del	DEL	A	-	-			2011-2315:2012-358-T	g.chr2:225368380delA	uc002vny.2	-	9	1750	c.1366delT	c.(1366-1368)TCTfs	p.S456fs	CUL3_uc010zls.1_Frame_Shift_Del_p.S390fs|CUL3_uc010fwy.1_Frame_Shift_Del_p.S462fs	NM_003590	NP_003581
C20orf26	26074	broad.mit.edu	37	20	20338154	20338155	+	Intron	INS	-	GT	GT	rs144757305		2011-2315:2012-358-T	g.chr20:20338154_20338155insGT	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
TRPM2	7226	broad.mit.edu	37	21	45836663	45836664	+	Intron	DEL	TG	-	-	rs9680313		2011-2315:2012-358-T	g.chr21:45836663_45836664delTG	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron|uc011afe.1_Intron	NM_003307	NP_003298
TNK2	10188	broad.mit.edu	37	3	195597873	195597874	+	Intron	INS	-	G	G	rs140349508	by1000genomes	2011-2315:2012-358-T	g.chr3:195597873_195597874insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
DOK7	285489	broad.mit.edu	37	4	3470174	3470175	+	Intron	INS	-	CTGC	CTGC	rs139750425	by1000genomes	2011-2315:2012-358-T	g.chr4:3470174_3470175insCTGC	uc003ghd.2	+						DOK7_uc003ghe.2_Intron	NM_173660	NP_775931
CRMP1	1400	broad.mit.edu	37	4	5858673	5858675	+	Intron	DEL	CAT	-	-			2011-2315:2012-358-T	g.chr4:5858673_5858675delCAT	uc003gip.2	-						CRMP1_uc003gin.1_Intron|CRMP1_uc003giq.2_Intron|CRMP1_uc003gir.2_Intron|CRMP1_uc003gis.2_Intron	NM_001313	NP_001304
CEP72	55722	broad.mit.edu	37	5	649313	649314	+	Intron	INS	-	G	G			2011-2315:2012-358-T	g.chr5:649313_649314insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649579	649580	+	Intron	INS	-	G	G			2011-2315:2012-358-T	g.chr5:649579_649580insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650428	650429	+	Intron	DEL	TG	-	-			2011-2315:2012-358-T	g.chr5:650428_650429delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651413	651414	+	Intron	INS	-	G	G	rs71921749		2011-2315:2012-358-T	g.chr5:651413_651414insG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1070488	1070489	+	Intron	INS	-	G	G	rs71887531		2011-2315:2012-358-T	g.chr5:1070488_1070489insG	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1071520	1071521	+	Intron	INS	-	A	A			2011-2315:2012-358-T	g.chr5:1071520_1071521insA	uc003jbu.2	-							NM_006598	NP_006589
NSD1	64324	broad.mit.edu	37	5	176687113	176687113	+	Frame_Shift_Del	DEL	G	-	-			2011-2315:2012-358-T	g.chr5:176687113delG	uc003mfr.3	+	14	5228	c.5090delG	c.(5089-5091)CGGfs	p.R1697fs	NSD1_uc003mft.3_Frame_Shift_Del_p.R1428fs|NSD1_uc003mfs.1_Frame_Shift_Del_p.R1594fs|NSD1_uc011dfx.1_Frame_Shift_Del_p.R1345fs	NM_022455	NP_071900
ELOVL2	54898	broad.mit.edu	37	6	11037298	11037301	+	Intron	DEL	AGAG	-	-	rs112221288;rs35592700		2011-2315:2012-358-T	g.chr6:11037298_11037301delAGAG	uc003mzp.3	-							NM_017770	NP_060240
HLA-G	3135	broad.mit.edu	37	6	29865448	29865448	+	Intron	DEL	G	-	-	rs9278416		2011-2315:2012-358-T	g.chr6:29865448delG	uc011dmb.1	+						HCG2P7_uc003nof.2_5'Flank	NM_002127	NP_002118
ADAP1	11033	broad.mit.edu	37	7	982905	982908	+	Intron	DEL	AGGG	-	-			2011-2315:2012-358-T	g.chr7:982905_982908delAGGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf50	84310	broad.mit.edu	37	7	1051069	1051070	+	Intron	INS	-	CA	CA	rs144280116;rs72401755	by1000genomes	2011-2315:2012-358-T	g.chr7:1051069_1051070insCA	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
TRAPPC9	83696	broad.mit.edu	37	8	141167184	141167184	+	Intron	DEL	T	-	-	rs66515425		2011-2315:2012-358-T	g.chr8:141167184delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
POMT1	10585	broad.mit.edu	37	9	134391263	134391264	+	Intron	DEL	AC	-	-			2011-2315:2012-358-T	g.chr9:134391263_134391264delAC	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
CAMTA1	23261	broad.mit.edu	37	1	7628331	7628333	+	Intron	DEL	CAT	-	-			2011-2316:2012-312-T	g.chr1:7628331_7628333delCAT	uc001aoi.2	+							NM_015215	NP_056030
BCL9	607	broad.mit.edu	37	1	147094147	147094148	+	Frame_Shift_Ins	INS	-	T	T			2011-2316:2012-312-T	g.chr1:147094147_147094148insT	uc001epq.2	+	9	3718_3719	c.2978_2979insT	c.(2977-2979)TATfs	p.Y993fs	BCL9_uc010ozr.1_Frame_Shift_Ins_p.Y919fs	NM_004326	NP_004317
KNDC1	85442	broad.mit.edu	37	10	135037274	135037275	+	Intron	INS	-	GT	GT	rs143526042		2011-2316:2012-312-T	g.chr10:135037274_135037275insGT	uc001llz.1	+							NM_152643	NP_689856
TSPAN4	7106	broad.mit.edu	37	11	859451	859452	+	Intron	INS	-	T	T			2011-2316:2012-312-T	g.chr11:859451_859452insT	uc001lsd.1	+						TSPAN4_uc001lse.1_Intron|TSPAN4_uc001lsf.1_Intron|TSPAN4_uc001lsg.1_Intron|TSPAN4_uc001lsh.1_Intron|TSPAN4_uc001lsi.1_Intron|TSPAN4_uc001lsj.1_Intron|uc001lsk.1_5'Flank	NM_003271	NP_003262
SLC22A12	116085	broad.mit.edu	37	11	64363763	64363765	+	Intron	DEL	GCT	-	-	rs61884371		2011-2316:2012-312-T	g.chr11:64363763_64363765delGCT	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
SLC22A12	116085	broad.mit.edu	37	11	64363776	64363779	+	Intron	DEL	TTGA	-	-			2011-2316:2012-312-T	g.chr11:64363776_64363779delTTGA	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
B4GALNT3	283358	broad.mit.edu	37	12	622360	622361	+	Intron	INS	-	CTT	CTT	rs146864211	by1000genomes	2011-2316:2012-312-T	g.chr12:622360_622361insCTT	uc001qii.1	+							NM_173593	NP_775864
ACCN2	41	broad.mit.edu	37	12	50464139	50464140	+	Intron	DEL	GT	-	-			2011-2316:2012-312-T	g.chr12:50464139_50464140delGT	uc001rvw.2	+						ACCN2_uc001rvv.2_Intron|ACCN2_uc009zln.2_Intron|ACCN2_uc009zlo.2_Intron	NM_001095	NP_001086
KSR2	283455	broad.mit.edu	37	12	118232000	118232001	+	Intron	INS	-	CAA	CAA			2011-2316:2012-312-T	g.chr12:118232000_118232001insCAA	uc001two.2	-							NM_173598	NP_775869
KSR2	283455	broad.mit.edu	37	12	118232039	118232040	+	Intron	DEL	CA	-	-			2011-2316:2012-312-T	g.chr12:118232039_118232040delCA	uc001two.2	-							NM_173598	NP_775869
TMEM132B	114795	broad.mit.edu	37	12	125895208	125895208	+	Intron	DEL	G	-	-			2011-2316:2012-312-T	g.chr12:125895208delG	uc001uhe.1	+							NM_052907	NP_443139
GOLGA3	2802	broad.mit.edu	37	12	133393755	133393756	+	Intron	INS	-	T	T			2011-2316:2012-312-T	g.chr12:133393755_133393756insT	uc001ukz.1	-						GOLGA3_uc001ula.1_Intron|GOLGA3_uc001ulb.2_Intron	NM_005895	NP_005886
GRK1	6011	broad.mit.edu	37	13	114431297	114431298	+	Intron	INS	-	G	G	rs150389858	by1000genomes	2011-2316:2012-312-T	g.chr13:114431297_114431298insG	uc010tkf.1	+							NM_002929	NP_002920
GRK1	6011	broad.mit.edu	37	13	114431298	114431299	+	Intron	INS	-	TG	TG	rs150389858	by1000genomes	2011-2316:2012-312-T	g.chr13:114431298_114431299insTG	uc010tkf.1	+							NM_002929	NP_002920
MAPK8IP3	23162	broad.mit.edu	37	16	1788301	1788302	+	Intron	INS	-	CG	CG			2011-2316:2012-312-T	g.chr16:1788301_1788302insCG	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
ANKRD11	29123	broad.mit.edu	37	16	89356636	89356637	+	Intron	INS	-	T	T			2011-2316:2012-312-T	g.chr16:89356636_89356637insT	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fnb.1_Intron	NM_013275	NP_037407
ABR	29	broad.mit.edu	37	17	1020901	1020902	+	Intron	INS	-	T	T			2011-2316:2012-312-T	g.chr17:1020901_1020902insT	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1020929	1020930	+	Intron	INS	-	T	T			2011-2316:2012-312-T	g.chr17:1020929_1020930insT	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
TP53	7157	broad.mit.edu	37	17	7577550	7577550	+	Frame_Shift_Del	DEL	C	-	-	rs28934572		2011-2316:2012-312-T	g.chr17:7577550delC	uc002gim.2	-	7	925	c.731delG	c.(730-732)GGCfs	p.G244fs	TP53_uc002gig.1_Frame_Shift_Del_p.G244fs|TP53_uc002gih.2_Frame_Shift_Del_p.G244fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.G112fs|TP53_uc010cng.1_Frame_Shift_Del_p.G112fs|TP53_uc002gii.1_Frame_Shift_Del_p.G112fs|TP53_uc010cnh.1_Frame_Shift_Del_p.G244fs|TP53_uc010cni.1_Frame_Shift_Del_p.G244fs|TP53_uc002gij.2_Frame_Shift_Del_p.G244fs|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Frame_Shift_Del_p.G151fs|TP53_uc002gio.2_Frame_Shift_Del_p.G112fs	NM_001126112	NP_001119584
DHRS7C	201140	broad.mit.edu	37	17	9695742	9695743	+	5'Flank	INS	-	TA	TA	rs73976606;rs146787565		2011-2316:2012-312-T	g.chr17:9695742_9695743insTA	uc010vvb.1	-						DHRS7C_uc010cof.2_5'Flank	NM_001105571	NP_001099041
CACNG4	27092	broad.mit.edu	37	17	65022423	65022424	+	Intron	DEL	GT	-	-			2011-2316:2012-312-T	g.chr17:65022423_65022424delGT	uc002jft.1	+							NM_014405	NP_055220
KATNAL2	83473	broad.mit.edu	37	18	44553381	44553382	+	Intron	DEL	GC	-	-	rs150874267	by1000genomes	2011-2316:2012-312-T	g.chr18:44553381_44553382delGC	uc002lco.2	+						KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Intron	NM_031303	NP_112593
CACNG7	59284	broad.mit.edu	37	19	54425084	54425084	+	Intron	DEL	T	-	-			2011-2316:2012-312-T	g.chr19:54425084delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
PXDN	7837	broad.mit.edu	37	2	1724095	1724095	+	Intron	DEL	T	-	-			2011-2316:2012-312-T	g.chr2:1724095delT	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
PXDN	7837	broad.mit.edu	37	2	1724097	1724099	+	Intron	DEL	CAC	-	-			2011-2316:2012-312-T	g.chr2:1724097_1724099delCAC	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
TTC15	51112	broad.mit.edu	37	2	3441492	3441492	+	Intron	DEL	A	-	-			2011-2316:2012-312-T	g.chr2:3441492delA	uc002qxm.1	+						TTC15_uc002qxn.1_Intron|TTC15_uc010ewm.1_Intron	NM_016030	NP_057114
RMND5A	64795	broad.mit.edu	37	2	87643656	87643659	+	Intron	DEL	CAGT	-	-			2011-2316:2012-312-T	g.chr2:87643656_87643659delCAGT	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643658	87643660	+	Intron	DEL	GTC	-	-			2011-2316:2012-312-T	g.chr2:87643658_87643660delGTC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87645238	87645241	+	Intron	DEL	AGCC	-	-			2011-2316:2012-312-T	g.chr2:87645238_87645241delAGCC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87719781	87719788	+	Intron	DEL	AGCCAGAT	-	-	rs143937270	by1000genomes	2011-2316:2012-312-T	g.chr2:87719781_87719788delAGCCAGAT	uc002srs.3	+								
NFE2L2	4780	broad.mit.edu	37	2	178129391	178129393	+	5'UTR	DEL	GGC	-	-			2011-2316:2012-312-T	g.chr2:178129391_178129393delGGC	uc002ulh.3	-	1					NFE2L2_uc002ulg.3_5'Flank|NFE2L2_uc010zfa.1_5'Flank|NFE2L2_uc002uli.3_Intron|NFE2L2_uc010fra.2_5'Flank|NFE2L2_uc010frb.2_5'Flank	NM_006164	NP_006155
KCNQ2	3785	broad.mit.edu	37	20	62074268	62074270	+	Intron	DEL	CAT	-	-			2011-2316:2012-312-T	g.chr20:62074268_62074270delCAT	uc002yey.1	-						KCNQ2_uc002yez.1_Intron|KCNQ2_uc002yfa.1_Intron|KCNQ2_uc002yfb.1_Intron|KCNQ2_uc011aax.1_Intron|KCNQ2_uc002yfc.1_Intron	NM_172107	NP_742105
MPPED1	758	broad.mit.edu	37	22	43828644	43828645	+	Intron	INS	-	AGAA	AGAA	rs72318681		2011-2316:2012-312-T	g.chr22:43828644_43828645insAGAA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
CEP72	55722	broad.mit.edu	37	5	650352	650352	+	Intron	DEL	A	-	-			2011-2316:2012-312-T	g.chr5:650352delA	uc003jbf.2	+							NM_018140	NP_060610
SYCP2L	221711	broad.mit.edu	37	6	10882361	10882361	+	Intron	DEL	C	-	-			2011-2316:2012-312-T	g.chr6:10882361delC	uc011dim.1	+						GCM2_uc003mzn.3_5'Flank		
CAPN11	11131	broad.mit.edu	37	6	44149362	44149365	+	Intron	DEL	ACAT	-	-	rs113916985		2011-2316:2012-312-T	g.chr6:44149362_44149365delACAT	uc003owt.1	+						CAPN11_uc011dvn.1_Intron	NM_007058	NP_008989
PSMB1	5689	broad.mit.edu	37	6	170804692	170804694	+	Intron	DEL	GAG	-	-	rs28674183		2011-2316:2012-312-T	g.chr6:170804692_170804694delGAG	uc003qxq.2	-							NM_002793	
ADAP1	11033	broad.mit.edu	37	7	945360	945361	+	Intron	INS	-	A	A	rs147722082	by1000genomes	2011-2316:2012-312-T	g.chr7:945360_945361insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945716	945717	+	Intron	INS	-	A	A			2011-2316:2012-312-T	g.chr7:945716_945717insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982905	982908	+	Intron	DEL	AGGG	-	-			2011-2316:2012-312-T	g.chr7:982905_982908delAGGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
EGFR	1956	broad.mit.edu	37	7	55234287	55234288	+	Intron	INS	-	TGG	TGG			2011-2316:2012-312-T	g.chr7:55234287_55234288insTGG	uc003tqk.2	+						EGFR_uc003tqi.2_Intron|EGFR_uc003tqj.2_Intron|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Intron|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
DTX2	113878	broad.mit.edu	37	7	76128106	76128109	+	Intron	DEL	TGTA	-	-	rs10588542		2011-2316:2012-312-T	g.chr7:76128106_76128109delTGTA	uc003uff.3	+						DTX2_uc011kgk.1_Intron|DTX2_uc003ufg.3_Intron|DTX2_uc003ufh.3_Intron|DTX2_uc003ufj.3_Intron|DTX2_uc003ufk.3_Intron|DTX2_uc003ufl.1_Intron|DTX2_uc003ufm.3_5'Flank	NM_020892	NP_065943
C7orf23	79161	broad.mit.edu	37	7	86839053	86839054	+	Intron	INS	-	GA	GA			2011-2316:2012-312-T	g.chr7:86839053_86839054insGA	uc003uio.2	-							NM_024315	NP_077291
C7orf23	79161	broad.mit.edu	37	7	86839098	86839099	+	Intron	INS	-	AC	AC			2011-2316:2012-312-T	g.chr7:86839098_86839099insAC	uc003uio.2	-							NM_024315	NP_077291
ERICH1	157697	broad.mit.edu	37	8	626446	626446	+	Intron	DEL	G	-	-			2011-2316:2012-312-T	g.chr8:626446delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
PCM1	5108	broad.mit.edu	37	8	17871617	17871618	+	Intron	INS	-	C	C			2011-2316:2012-312-T	g.chr8:17871617_17871618insC	uc003wyi.3	+						PCM1_uc011kyh.1_Intron|PCM1_uc003wyj.3_Intron|PCM1_uc011kyi.1_Intron|PCM1_uc011kyj.1_Intron|PCM1_uc003wyk.3_Intron|PCM1_uc011kyk.1_Intron	NM_006197	NP_006188
SCARA5	286133	broad.mit.edu	37	8	27776529	27776531	+	Intron	DEL	GGA	-	-			2011-2316:2012-312-T	g.chr8:27776529_27776531delGGA	uc003xgj.2	-						SCARA5_uc010luz.2_Intron|SCARA5_uc003xgk.2_Intron|SCARA5_uc003xgl.2_Intron	NM_173833	NP_776194
COL22A1	169044	broad.mit.edu	37	8	139754517	139754518	+	Intron	INS	-	TGG	TGG	rs140079310	by1000genomes	2011-2316:2012-312-T	g.chr8:139754517_139754518insTGG	uc003yvd.2	-						COL22A1_uc011ljo.1_Intron	NM_152888	NP_690848
TRAPPC9	83696	broad.mit.edu	37	8	141120520	141120520	+	Intron	DEL	T	-	-			2011-2316:2012-312-T	g.chr8:141120520delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
TRAPPC9	83696	broad.mit.edu	37	8	141120526	141120527	+	Intron	INS	-	T	T			2011-2316:2012-312-T	g.chr8:141120526_141120527insT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
COL5A1	1289	broad.mit.edu	37	9	137652456	137652457	+	Intron	DEL	CA	-	-			2011-2316:2012-312-T	g.chr9:137652456_137652457delCA	uc004cfe.2	+							NM_000093	NP_000084
EXD3	54932	broad.mit.edu	37	9	140224526	140224526	+	Intron	DEL	A	-	-			2011-2316:2012-312-T	g.chr9:140224526delA	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
SHOX	6473	broad.mit.edu	37	X	583483	583484	+	5'Flank	INS	-	AG	AG			2011-2316:2012-312-T	g.chrX:583483_583484insAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SCNN1D	6339	broad.mit.edu	37	1	1224812	1224813	+	Intron	DEL	CC	-	-			2011-2317:2012-357-T	g.chr1:1224812_1224813delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1225477	1225478	+	Intron	DEL	TC	-	-			2011-2317:2012-357-T	g.chr1:1225477_1225478delTC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1225507	1225508	+	Intron	DEL	CC	-	-			2011-2317:2012-357-T	g.chr1:1225507_1225508delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
CAMTA1	23261	broad.mit.edu	37	1	7715284	7715285	+	Intron	DEL	AC	-	-			2011-2317:2012-357-T	g.chr1:7715284_7715285delAC	uc001aoi.2	+							NM_015215	NP_056030
YY1AP1	55249	broad.mit.edu	37	1	155658216	155658218	+	Intron	DEL	TTC	-	-			2011-2317:2012-357-T	g.chr1:155658216_155658218delTTC	uc001fln.2	-						YY1AP1_uc010pgi.1_In_Frame_Del_p.R13del|YY1AP1_uc001flh.2_In_Frame_Del_p.R13del|YY1AP1_uc009wqt.2_5'UTR|YY1AP1_uc001flk.2_Intron|YY1AP1_uc001fll.2_Intron|YY1AP1_uc009wqv.2_Intron|YY1AP1_uc001flm.2_Intron|YY1AP1_uc001fli.2_Intron|YY1AP1_uc009wqu.2_Intron|YY1AP1_uc001flj.2_Intron|YY1AP1_uc009wqw.2_Intron|YY1AP1_uc001flo.2_Intron|YY1AP1_uc001flp.2_Intron|YY1AP1_uc010pgj.1_Intron|YY1AP1_uc009wqx.2_In_Frame_Del_p.R13del|YY1AP1_uc010pgk.1_In_Frame_Del_p.R13del|DAP3_uc001flq.2_5'Flank|DAP3_uc001flr.2_5'Flank|DAP3_uc001fls.2_5'Flank|DAP3_uc010pgl.1_5'Flank|DAP3_uc001flt.2_5'Flank|DAP3_uc001flu.2_5'Flank|DAP3_uc010pgm.1_5'Flank	NM_139118	NP_620829
SMYD3	64754	broad.mit.edu	37	1	246188218	246188219	+	Intron	INS	-	A	A			2011-2317:2012-357-T	g.chr1:246188218_246188219insA	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
SHANK2	22941	broad.mit.edu	37	11	70668939	70668940	+	Intron	INS	-	G	G	rs145988984;rs11237614	by1000genomes	2011-2317:2012-357-T	g.chr11:70668939_70668940insG	uc001oqc.2	-							NM_012309	NP_036441
ST8SIA1	6489	broad.mit.edu	37	12	22473901	22473902	+	Intron	INS	-	A	A			2011-2317:2012-357-T	g.chr12:22473901_22473902insA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
ST8SIA1	6489	broad.mit.edu	37	12	22473905	22473906	+	Intron	INS	-	A	A			2011-2317:2012-357-T	g.chr12:22473905_22473906insA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
NCOR2	9612	broad.mit.edu	37	12	124952858	124952859	+	Intron	INS	-	TCC	TCC			2011-2317:2012-357-T	g.chr12:124952858_124952859insTCC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
TMEM132D	121256	broad.mit.edu	37	12	129573554	129573554	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr12:129573554delA	uc009zyl.1	-							NM_133448	NP_597705
ATP11A	23250	broad.mit.edu	37	13	113369653	113369653	+	Intron	DEL	G	-	-			2011-2317:2012-357-T	g.chr13:113369653delG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
CUL4A	8451	broad.mit.edu	37	13	113886410	113886411	+	Intron	INS	-	C	C	rs142402478	by1000genomes	2011-2317:2012-357-T	g.chr13:113886410_113886411insC	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc001vtl.1_5'Flank	NM_001008895	NP_001008895
CUL4A	8451	broad.mit.edu	37	13	113886411	113886412	+	Intron	INS	-	GC	GC	rs142402478;rs67118924	by1000genomes	2011-2317:2012-357-T	g.chr13:113886411_113886412insGC	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc001vtl.1_5'Flank	NM_001008895	NP_001008895
SERPINA12	145264	broad.mit.edu	37	14	94985364	94985366	+	5'Flank	DEL	GTA	-	-			2011-2317:2012-357-T	g.chr14:94985364_94985366delGTA	uc001ydj.2	-							NM_173850	NP_776249
ADAMTSL3	57188	broad.mit.edu	37	15	84598536	84598537	+	Intron	DEL	AC	-	-			2011-2317:2012-357-T	g.chr15:84598536_84598537delAC	uc002bjz.3	+						ADAMTSL3_uc010bmt.1_Intron|ADAMTSL3_uc010bmu.1_Intron	NM_207517	NP_997400
ADAMTS17	170691	broad.mit.edu	37	15	100598506	100598507	+	Intron	INS	-	T	T	rs150896439;rs68090700	by1000genomes	2011-2317:2012-357-T	g.chr15:100598506_100598507insT	uc002bvv.1	-							NM_139057	NP_620688
LMF1	64788	broad.mit.edu	37	16	909720	909720	+	Intron	DEL	C	-	-			2011-2317:2012-357-T	g.chr16:909720delC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
CMIP	80790	broad.mit.edu	37	16	81702425	81702428	+	Intron	DEL	CACT	-	-			2011-2317:2012-357-T	g.chr16:81702425_81702428delCACT	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
ANKRD11	29123	broad.mit.edu	37	16	89373193	89373196	+	Intron	DEL	ACCT	-	-			2011-2317:2012-357-T	g.chr16:89373193_89373196delACCT	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_Intron|ANKRD11_uc002fnf.1_Intron	NM_013275	NP_037407
DPEP1	1800	broad.mit.edu	37	16	89701305	89701306	+	Intron	INS	-	C	C			2011-2317:2012-357-T	g.chr16:89701305_89701306insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701336	89701337	+	Intron	INS	-	C	C			2011-2317:2012-357-T	g.chr16:89701336_89701337insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701363	89701363	+	Intron	DEL	T	-	-			2011-2317:2012-357-T	g.chr16:89701363delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
NF1	4763	broad.mit.edu	37	17	29482989	29482989	+	Intron	DEL	T	-	-			2011-2317:2012-357-T	g.chr17:29482989delT	uc002hgg.2	+						NF1_uc002hge.1_Intron|NF1_uc002hgf.1_Intron|NF1_uc002hgh.2_Intron|NF1_uc010csn.1_5'Flank	NM_001042492	NP_001035957
BAHCC1	57597	broad.mit.edu	37	17	79399256	79399256	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr17:79399256delA	uc002kaf.2	+							NM_001080519	NP_001073988
ZNF236	7776	broad.mit.edu	37	18	74679304	74679305	+	Intron	INS	-	A	A			2011-2317:2012-357-T	g.chr18:74679304_74679305insA	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
ZNF236	7776	broad.mit.edu	37	18	74679309	74679310	+	Intron	INS	-	T	T			2011-2317:2012-357-T	g.chr18:74679309_74679310insT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
SPTBN4	57731	broad.mit.edu	37	19	41062903	41062903	+	Intron	DEL	C	-	-	rs34510741		2011-2317:2012-357-T	g.chr19:41062903delC	uc002ony.2	+						SPTBN4_uc002onx.2_Intron|SPTBN4_uc002onz.2_Intron|SPTBN4_uc010egx.2_Intron|SPTBN4_uc002ooa.2_Intron	NM_020971	NP_066022
ZNF547	284306	broad.mit.edu	37	19	58010893	58010894	+	Intron	INS	-	A	A			2011-2317:2012-357-T	g.chr19:58010893_58010894insA	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
ZNF547	284306	broad.mit.edu	37	19	58010895	58010898	+	Intron	DEL	CCTA	-	-			2011-2317:2012-357-T	g.chr19:58010895_58010898delCCTA	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
ZNF547	284306	broad.mit.edu	37	19	58010989	58010990	+	Intron	INS	-	C	C	rs113745872		2011-2317:2012-357-T	g.chr19:58010989_58010990insC	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
PXDN	7837	broad.mit.edu	37	2	1707766	1707767	+	Intron	INS	-	A	A			2011-2317:2012-357-T	g.chr2:1707766_1707767insA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87625949	87625949	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr2:87625949delA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643626	87643629	+	Intron	DEL	AGCT	-	-			2011-2317:2012-357-T	g.chr2:87643626_87643629delAGCT	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643656	87643659	+	Intron	DEL	CAGT	-	-			2011-2317:2012-357-T	g.chr2:87643656_87643659delCAGT	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87644146	87644147	+	Intron	INS	-	A	A			2011-2317:2012-357-T	g.chr2:87644146_87644147insA	uc002srs.3	+								
RAB3GAP1	22930	broad.mit.edu	37	2	135875389	135875390	+	Intron	INS	-	GC	GC	rs72362976		2011-2317:2012-357-T	g.chr2:135875389_135875390insGC	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
RAB3GAP1	22930	broad.mit.edu	37	2	135875402	135875402	+	Intron	DEL	T	-	-			2011-2317:2012-357-T	g.chr2:135875402delT	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
RAB3GAP1	22930	broad.mit.edu	37	2	135875415	135875415	+	Intron	DEL	T	-	-			2011-2317:2012-357-T	g.chr2:135875415delT	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
C20orf26	26074	broad.mit.edu	37	20	20338557	20338558	+	Intron	INS	-	TG	TG			2011-2317:2012-357-T	g.chr20:20338557_20338558insTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
CHRNA4	1137	broad.mit.edu	37	20	61988540	61988541	+	Intron	INS	-	CCGTGTC	CCGTGTC	rs141158495	by1000genomes	2011-2317:2012-357-T	g.chr20:61988540_61988541insCCGTGTC	uc002yes.2	-						CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_Intron|CHRNA4_uc010gke.1_Intron|CHRNA4_uc002yev.1_Intron|CHRNA4_uc010gkf.1_Intron	NM_000744	NP_000735
GMEB2	26205	broad.mit.edu	37	20	62241073	62241074	+	Intron	DEL	CA	-	-			2011-2317:2012-357-T	g.chr20:62241073_62241074delCA	uc002yfp.1	-						GMEB2_uc002yfq.1_Intron	NM_012384	NP_036516
GMEB2	26205	broad.mit.edu	37	20	62241106	62241106	+	Intron	DEL	C	-	-			2011-2317:2012-357-T	g.chr20:62241106delC	uc002yfp.1	-						GMEB2_uc002yfq.1_Intron	NM_012384	NP_036516
PRPF6	24148	broad.mit.edu	37	20	62652916	62652917	+	Intron	DEL	TG	-	-			2011-2317:2012-357-T	g.chr20:62652916_62652917delTG	uc002yho.2	+						PRPF6_uc002yhp.2_Intron	NM_012469	NP_036601
ADARB1	104	broad.mit.edu	37	21	46529242	46529243	+	Intron	DEL	TA	-	-	rs140518083	by1000genomes	2011-2317:2012-357-T	g.chr21:46529242_46529243delTA	uc002zgy.2	+						ADARB1_uc002zgp.2_Intron|ADARB1_uc002zgr.2_Intron|ADARB1_uc002zgs.2_Intron|ADARB1_uc002zgw.2_Intron|ADARB1_uc002zgv.2_Intron|ADARB1_uc002zgt.2_Intron|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_Intron|ADARB1_uc002zgu.2_Intron	NM_015833	NP_056648
CACNA1I	8911	broad.mit.edu	37	22	40019630	40019631	+	Intron	DEL	TG	-	-			2011-2317:2012-357-T	g.chr22:40019630_40019631delTG	uc003ayc.2	+						CACNA1I_uc003ayd.2_Intron|CACNA1I_uc003aye.2_Intron|CACNA1I_uc003ayf.2_Intron	NM_021096	NP_066919
FAM19A5	25817	broad.mit.edu	37	22	48925479	48925480	+	Intron	INS	-	C	C			2011-2317:2012-357-T	g.chr22:48925479_48925480insC	uc003bim.3	+							NM_001082967	NP_001076436
CACNA1D	776	broad.mit.edu	37	3	53839874	53839875	+	Intron	INS	-	CCC	CCC			2011-2317:2012-357-T	g.chr3:53839874_53839875insCCC	uc003dgv.3	+						CACNA1D_uc003dgu.3_Intron|CACNA1D_uc003dgy.3_Intron|CACNA1D_uc003dgw.3_Intron|CACNA1D_uc011bes.1_Intron	NM_001128840	NP_001122312
ROBO2	6092	broad.mit.edu	37	3	77459767	77459767	+	Intron	DEL	T	-	-			2011-2317:2012-357-T	g.chr3:77459767delT	uc003dpy.3	+						ROBO2_uc003dpz.2_Intron|ROBO2_uc011bgj.1_Intron|ROBO2_uc011bgk.1_Intron	NM_002942	NP_002933
ROBO2	6092	broad.mit.edu	37	3	77459772	77459773	+	Intron	INS	-	T	T			2011-2317:2012-357-T	g.chr3:77459772_77459773insT	uc003dpy.3	+						ROBO2_uc003dpz.2_Intron|ROBO2_uc011bgj.1_Intron|ROBO2_uc011bgk.1_Intron	NM_002942	NP_002933
ROBO2	6092	broad.mit.edu	37	3	77459797	77459799	+	Intron	DEL	TTC	-	-			2011-2317:2012-357-T	g.chr3:77459797_77459799delTTC	uc003dpy.3	+						ROBO2_uc003dpz.2_Intron|ROBO2_uc011bgj.1_Intron|ROBO2_uc011bgk.1_Intron	NM_002942	NP_002933
ROBO2	6092	broad.mit.edu	37	3	77459806	77459808	+	Intron	DEL	TCT	-	-			2011-2317:2012-357-T	g.chr3:77459806_77459808delTCT	uc003dpy.3	+						ROBO2_uc003dpz.2_Intron|ROBO2_uc011bgj.1_Intron|ROBO2_uc011bgk.1_Intron	NM_002942	NP_002933
BCL6	604	broad.mit.edu	37	3	187443241	187443242	+	Intron	INS	-	ACT	ACT	rs112603207;rs67024507	by1000genomes	2011-2317:2012-357-T	g.chr3:187443241_187443242insACT	uc003frp.3	-						BCL6_uc011bsf.1_Intron|BCL6_uc010hza.2_Intron|BCL6_uc003frq.1_Intron	NM_001130845	NP_001124317
TNK2	10188	broad.mit.edu	37	3	195597917	195597918	+	Intron	INS	-	G	G			2011-2317:2012-357-T	g.chr3:195597917_195597918insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
CEP72	55722	broad.mit.edu	37	5	649340	649341	+	Intron	INS	-	G	G			2011-2317:2012-357-T	g.chr5:649340_649341insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649380	649381	+	Intron	INS	-	G	G			2011-2317:2012-357-T	g.chr5:649380_649381insG	uc003jbf.2	+							NM_018140	NP_060610
TERT	7015	broad.mit.edu	37	5	1273198	1273199	+	Intron	DEL	CA	-	-	rs72327925		2011-2317:2012-357-T	g.chr5:1273198_1273199delCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
IL6ST	3572	broad.mit.edu	37	5	55278829	55278829	+	Intron	DEL	T	-	-	rs111793262		2011-2317:2012-357-T	g.chr5:55278829delT	uc003jqq.2	-						IL6ST_uc011cqk.1_5'Flank|IL6ST_uc003jqr.2_Intron	NM_002184	NP_002175
ADAMTS2	9509	broad.mit.edu	37	5	178561808	178561809	+	Intron	INS	-	G	G			2011-2317:2012-357-T	g.chr5:178561808_178561809insG	uc003mjw.2	-							NM_014244	NP_055059
ADAMTS2	9509	broad.mit.edu	37	5	178562132	178562132	+	Intron	DEL	C	-	-			2011-2317:2012-357-T	g.chr5:178562132delC	uc003mjw.2	-							NM_014244	NP_055059
ADAMTS2	9509	broad.mit.edu	37	5	178704796	178704796	+	Intron	DEL	G	-	-			2011-2317:2012-357-T	g.chr5:178704796delG	uc003mjw.2	-						ADAMTS2_uc011dgm.1_Intron	NM_014244	NP_055059
THBS2	7058	broad.mit.edu	37	6	169642777	169642778	+	Intron	INS	-	GTG	GTG	rs149423656	by1000genomes	2011-2317:2012-357-T	g.chr6:169642777_169642778insGTG	uc003qwt.2	-							NM_003247	NP_003238
THBS2	7058	broad.mit.edu	37	6	169642837	169642837	+	Intron	DEL	G	-	-			2011-2317:2012-357-T	g.chr6:169642837delG	uc003qwt.2	-							NM_003247	NP_003238
THBS2	7058	broad.mit.edu	37	6	169643057	169643058	+	Intron	INS	-	C	C			2011-2317:2012-357-T	g.chr6:169643057_169643058insC	uc003qwt.2	-							NM_003247	NP_003238
THBS2	7058	broad.mit.edu	37	6	169643060	169643061	+	Intron	DEL	GC	-	-			2011-2317:2012-357-T	g.chr6:169643060_169643061delGC	uc003qwt.2	-							NM_003247	NP_003238
ADAP1	11033	broad.mit.edu	37	7	945197	945197	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr7:945197delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945204	945204	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr7:945204delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945211	945211	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr7:945211delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945232	945232	+	Intron	DEL	A	-	-	rs143359127	by1000genomes	2011-2317:2012-357-T	g.chr7:945232delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945253	945253	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr7:945253delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945299	945299	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr7:945299delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945326	945326	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr7:945326delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945333	945333	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr7:945333delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945347	945347	+	Intron	DEL	A	-	-			2011-2317:2012-357-T	g.chr7:945347delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
EMID2	136227	broad.mit.edu	37	7	101063985	101063986	+	Intron	INS	-	T	T			2011-2317:2012-357-T	g.chr7:101063985_101063986insT	uc010lhy.1	+						EMID2_uc003uyo.1_Intron	NM_133457	NP_597714
PRKAG2	51422	broad.mit.edu	37	7	151552573	151552574	+	Intron	INS	-	CA	CA			2011-2317:2012-357-T	g.chr7:151552573_151552574insCA	uc003wkk.2	-						PRKAG2_uc010lqe.1_Intron|PRKAG2_uc003wkm.1_Intron	NM_016203	NP_057287
PTPRN2	5799	broad.mit.edu	37	7	158055475	158055476	+	Intron	DEL	AC	-	-			2011-2317:2012-357-T	g.chr7:158055475_158055476delAC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158317179	158317180	+	Intron	INS	-	GTC	GTC	rs10641395;rs35653944		2011-2317:2012-357-T	g.chr7:158317179_158317180insGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1780798	1780799	+	Intron	DEL	AG	-	-			2011-2317:2012-357-T	g.chr8:1780798_1780799delAG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
UBXN2B	137886	broad.mit.edu	37	8	59337247	59337247	+	Intron	DEL	G	-	-			2011-2317:2012-357-T	g.chr8:59337247delG	uc003xtl.2	+							NM_001077619	NP_001071087
TRAPPC9	83696	broad.mit.edu	37	8	141167184	141167184	+	Intron	DEL	T	-	-	rs66515425		2011-2317:2012-357-T	g.chr8:141167184delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
TOP1MT	116447	broad.mit.edu	37	8	144404254	144404255	+	Intron	DEL	AG	-	-	rs144556994	by1000genomes	2011-2317:2012-357-T	g.chr8:144404254_144404255delAG	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
SCNN1D	6339	broad.mit.edu	37	1	1225452	1225453	+	Intron	INS	-	CC	CC			2011-2318:2012-356-T	g.chr1:1225452_1225453insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
MTOR	2475	broad.mit.edu	37	1	11318617	11318617	+	Frame_Shift_Del	DEL	G	-	-			2011-2318:2012-356-T	g.chr1:11318617delG	uc001asd.2	-	3	317	c.196delC	c.(196-198)CAAfs	p.Q66fs		NM_004958	NP_004949
TINAGL1	64129	broad.mit.edu	37	1	32044154	32044155	+	Intron	DEL	GT	-	-			2011-2318:2012-356-T	g.chr1:32044154_32044155delGT	uc001bta.2	+						TINAGL1_uc001bsz.2_Intron|TINAGL1_uc010ogi.1_Intron|TINAGL1_uc010ogj.1_Intron|TINAGL1_uc010ogk.1_Intron	NM_022164	NP_071447
IDI1	3422	broad.mit.edu	37	10	1092917	1092917	+	Intron	DEL	T	-	-			2011-2318:2012-356-T	g.chr10:1092917delT	uc001iga.2	-						IDI1_uc001ifz.2_5'Flank|IDI1_uc001igb.2_Intron|IDI1_uc001igc.2_Intron|uc001igd.2_5'Flank	NM_004508	NP_004499
CD3G	917	broad.mit.edu	37	11	118213518	118213518	+	5'Flank	DEL	G	-	-			2011-2318:2012-356-T	g.chr11:118213518delG	uc001psu.2	+						CD3D_uc001pss.1_5'Flank|CD3D_uc001pst.1_5'Flank	NM_000073	NP_000064
ST8SIA1	6489	broad.mit.edu	37	12	22473930	22473931	+	Intron	DEL	AA	-	-			2011-2318:2012-356-T	g.chr12:22473930_22473931delAA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
TMEM120B	144404	broad.mit.edu	37	12	122185417	122185418	+	Intron	INS	-	CA	CA			2011-2318:2012-356-T	g.chr12:122185417_122185418insCA	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
TMEM120B	144404	broad.mit.edu	37	12	122186011	122186012	+	Intron	INS	-	CA	CA	rs112015409		2011-2318:2012-356-T	g.chr12:122186011_122186012insCA	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
DNAH10	196385	broad.mit.edu	37	12	124338408	124338409	+	Intron	DEL	CA	-	-	rs34495607;rs76184058		2011-2318:2012-356-T	g.chr12:124338408_124338409delCA	uc001uft.3	+							NM_207437	NP_997320
PCCA	5095	broad.mit.edu	37	13	101104152	101104153	+	Intron	DEL	TC	-	-			2011-2318:2012-356-T	g.chr13:101104152_101104153delTC	uc001voo.2	+						PCCA_uc010aga.2_Intron|PCCA_uc010tiz.1_Intron|PCCA_uc001vop.2_Intron	NM_000282	NP_000273
PCCA	5095	broad.mit.edu	37	13	101104163	101104163	+	Intron	DEL	C	-	-			2011-2318:2012-356-T	g.chr13:101104163delC	uc001voo.2	+						PCCA_uc010aga.2_Intron|PCCA_uc010tiz.1_Intron|PCCA_uc001vop.2_Intron	NM_000282	NP_000273
PCCA	5095	broad.mit.edu	37	13	101104188	101104189	+	Intron	INS	-	CTC	CTC			2011-2318:2012-356-T	g.chr13:101104188_101104189insCTC	uc001voo.2	+						PCCA_uc010aga.2_Intron|PCCA_uc010tiz.1_Intron|PCCA_uc001vop.2_Intron	NM_000282	NP_000273
RASA3	22821	broad.mit.edu	37	13	114749397	114749398	+	Intron	DEL	TG	-	-	rs35352983		2011-2318:2012-356-T	g.chr13:114749397_114749398delTG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
INF2	64423	broad.mit.edu	37	14	105240509	105240510	+	Intron	INS	-	CCA	CCA			2011-2318:2012-356-T	g.chr14:105240509_105240510insCCA	uc010tyi.1	+						AKT1_uc001ypk.2_Intron|AKT1_uc001ypl.2_Intron|AKT1_uc010axa.2_Intron|AKT1_uc001ypm.2_Intron|AKT1_uc001ypn.2_Intron|AKT1_uc001ypj.2_5'Flank|AKT1_uc010tyk.1_Intron	NM_022489	NP_071934
ATP10A	57194	broad.mit.edu	37	15	26004008	26004009	+	Intron	INS	-	CTAA	CTAA			2011-2318:2012-356-T	g.chr15:26004008_26004009insCTAA	uc010ayu.2	-							NM_024490	NP_077816
ZNF19	7567	broad.mit.edu	37	16	71509603	71509603	+	Frame_Shift_Del	DEL	C	-	-			2011-2318:2012-356-T	g.chr16:71509603delC	uc010cgc.1	-	6	1353	c.847delG	c.(847-849)GTTfs	p.V283fs	ZNF23_uc002fai.2_Intron|ZNF19_uc002fak.1_Frame_Shift_Del_p.V271fs|ZNF19_uc002fal.1_Frame_Shift_Del_p.V271fs|ZNF19_uc002fam.1_Frame_Shift_Del_p.V283fs	NM_006961	NP_008892
CPNE7	27132	broad.mit.edu	37	16	89654317	89654318	+	Intron	INS	-	C	C	rs151294363		2011-2318:2012-356-T	g.chr16:89654317_89654318insC	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
CPNE7	27132	broad.mit.edu	37	16	89654603	89654604	+	Intron	INS	-	T	T			2011-2318:2012-356-T	g.chr16:89654603_89654604insT	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
TP53	7157	broad.mit.edu	37	17	7579584	7579585	+	Frame_Shift_Ins	INS	-	G	G	rs11575998		2011-2318:2012-356-T	g.chr17:7579584_7579585insG	uc002gim.2	-	4	296_297	c.102_103insC	c.(100-105)CCCTTGfs	p.P34fs	TP53_uc002gig.1_Frame_Shift_Ins_p.P34fs|TP53_uc002gih.2_Frame_Shift_Ins_p.P34fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Frame_Shift_Ins_p.P34fs|TP53_uc010cni.1_Frame_Shift_Ins_p.P34fs|TP53_uc002gij.2_Frame_Shift_Ins_p.P34fs|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_5'UTR|TP53_uc010cnk.1_Frame_Shift_Ins_p.P49fs	NM_001126112	NP_001119584
BAHCC1	57597	broad.mit.edu	37	17	79399350	79399350	+	Intron	DEL	G	-	-			2011-2318:2012-356-T	g.chr17:79399350delG	uc002kaf.2	+							NM_001080519	NP_001073988
BAHCC1	57597	broad.mit.edu	37	17	79399569	79399570	+	Intron	INS	-	A	A	rs138850595	by1000genomes	2011-2318:2012-356-T	g.chr17:79399569_79399570insA	uc002kaf.2	+							NM_001080519	NP_001073988
TBCD	6904	broad.mit.edu	37	17	80807066	80807067	+	Intron	INS	-	C	C	rs57484051		2011-2318:2012-356-T	g.chr17:80807066_80807067insC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
PIK3C3	5289	broad.mit.edu	37	18	39629726	39629726	+	Intron	DEL	T	-	-			2011-2318:2012-356-T	g.chr18:39629726delT	uc002lap.2	+						PIK3C3_uc010xcl.1_Intron|PIK3C3_uc002laq.2_Intron|PIK3C3_uc002lar.1_3'UTR	NM_002647	NP_002638
HDGFRP2	84717	broad.mit.edu	37	19	4493087	4493088	+	Intron	INS	-	TGTG	TGTG	rs143683103	by1000genomes	2011-2318:2012-356-T	g.chr19:4493087_4493088insTGTG	uc002mao.2	+						HDGFRP2_uc002map.2_Intron|HDGFRP2_uc010dtz.1_Intron	NM_001001520	NP_001001520
SH3YL1	26751	broad.mit.edu	37	2	235516	235517	+	Intron	INS	-	CAA	CAA			2011-2318:2012-356-T	g.chr2:235516_235517insCAA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
SH3YL1	26751	broad.mit.edu	37	2	235534	235535	+	Intron	INS	-	GCA	GCA			2011-2318:2012-356-T	g.chr2:235534_235535insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
RMND5A	64795	broad.mit.edu	37	2	87633950	87633950	+	Intron	DEL	C	-	-			2011-2318:2012-356-T	g.chr2:87633950delC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641742	87641745	+	Intron	DEL	AGCC	-	-			2011-2318:2012-356-T	g.chr2:87641742_87641745delAGCC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641749	87641750	+	Intron	INS	-	A	A	rs145264498		2011-2318:2012-356-T	g.chr2:87641749_87641750insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87651177	87651178	+	Intron	INS	-	A	A			2011-2318:2012-356-T	g.chr2:87651177_87651178insA	uc002srs.3	+								
FBLN7	129804	broad.mit.edu	37	2	112918426	112918427	+	Intron	DEL	CA	-	-	rs3080943		2011-2318:2012-356-T	g.chr2:112918426_112918427delCA	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
LRP1B	53353	broad.mit.edu	37	2	141250292	141250306	+	Intron	DEL	CTTTAAGTATGTATG	-	-			2011-2318:2012-356-T	g.chr2:141250292_141250306delCTTTAAGTATGTATG	uc002tvj.1	-							NM_018557	NP_061027
LRP1B	53353	broad.mit.edu	37	2	141359227	141359228	+	Intron	INS	-	A	A			2011-2318:2012-356-T	g.chr2:141359227_141359228insA	uc002tvj.1	-							NM_018557	NP_061027
TAF4	6874	broad.mit.edu	37	20	60557700	60557701	+	Intron	INS	-	C	C	rs147634297	by1000genomes	2011-2318:2012-356-T	g.chr20:60557700_60557701insC	uc002ybs.2	-							NM_003185	NP_003176
PRIC285	85441	broad.mit.edu	37	20	62190928	62190930	+	Intron	DEL	GGG	-	-			2011-2318:2012-356-T	g.chr20:62190928_62190930delGGG	uc002yfm.2	-						PRIC285_uc002yfl.1_Intron	NM_001037335	NP_001032412
CLTCL1	8218	broad.mit.edu	37	22	19189983	19189984	+	Intron	INS	-	C	C	rs12172332	by1000genomes	2011-2318:2012-356-T	g.chr22:19189983_19189984insC	uc002zpb.2	-						CLTCL1_uc011agv.1_Intron|CLTCL1_uc011agw.1_Intron|CLTCL1_uc011agt.1_Intron|CLTCL1_uc011agu.1_Intron|CLTCL1_uc010grm.1_Intron|CLTCL1_uc002zpe.2_Intron|CLTCL1_uc002zpd.1_Intron	NM_007098	NP_009029
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45196770	45196770	+	Intron	DEL	C	-	-			2011-2318:2012-356-T	g.chr22:45196770delC	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
PHF21B	112885	broad.mit.edu	37	22	45280551	45280552	+	Intron	INS	-	CAC	CAC	rs145192559;rs140838666	by1000genomes	2011-2318:2012-356-T	g.chr22:45280551_45280552insCAC	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
SEMA3G	56920	broad.mit.edu	37	3	52478750	52478751	+	Intron	INS	-	CACC	CACC	rs11268291		2011-2318:2012-356-T	g.chr3:52478750_52478751insCACC	uc003dea.1	-							NM_020163	NP_064548
SLC12A7	10723	broad.mit.edu	37	5	1070630	1070630	+	Intron	DEL	C	-	-			2011-2318:2012-356-T	g.chr5:1070630delC	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072746	1072746	+	Intron	DEL	G	-	-			2011-2318:2012-356-T	g.chr5:1072746delG	uc003jbu.2	-							NM_006598	NP_006589
NSD1	64324	broad.mit.edu	37	5	176637800	176637800	+	Frame_Shift_Del	DEL	G	-	-			2011-2318:2012-356-T	g.chr5:176637800delG	uc003mfr.3	+	5	2538	c.2400delG	c.(2398-2400)ATGfs	p.M800fs	NSD1_uc003mft.3_Frame_Shift_Del_p.M531fs|NSD1_uc003mfs.1_Frame_Shift_Del_p.M697fs|NSD1_uc011dfx.1_Frame_Shift_Del_p.M448fs	NM_022455	NP_071900
PSMB1	5689	broad.mit.edu	37	6	170783995	170783995	+	Intron	DEL	C	-	-			2011-2318:2012-356-T	g.chr6:170783995delC	uc003qxq.2	-							NM_002793	
TOP1MT	116447	broad.mit.edu	37	8	144404962	144404963	+	Intron	DEL	AT	-	-			2011-2318:2012-356-T	g.chr8:144404962_144404963delAT	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144405010	144405011	+	Intron	DEL	CA	-	-			2011-2318:2012-356-T	g.chr8:144405010_144405011delCA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144405023	144405024	+	Intron	DEL	AA	-	-			2011-2318:2012-356-T	g.chr8:144405023_144405024delAA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
PARP10	84875	broad.mit.edu	37	8	145055521	145055523	+	Intron	DEL	TGA	-	-	rs62530286	by1000genomes	2011-2318:2012-356-T	g.chr8:145055521_145055523delTGA	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
ARHGAP39	80728	broad.mit.edu	37	8	145913001	145913002	+	5'Flank	INS	-	C	C			2011-2318:2012-356-T	g.chr8:145913001_145913002insC	uc011llk.1	-							NM_025251	NP_079527
OLFM1	10439	broad.mit.edu	37	9	137983358	137983361	+	Intron	DEL	CACA	-	-			2011-2318:2012-356-T	g.chr9:137983358_137983361delCACA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
NACC2	138151	broad.mit.edu	37	9	138916349	138916350	+	Intron	INS	-	TGTG	TGTG	rs139555936;rs35455166	by1000genomes	2011-2318:2012-356-T	g.chr9:138916349_138916350insTGTG	uc004cgw.2	-						NACC2_uc010nbh.2_Intron	NM_144653	NP_653254
EXD3	54932	broad.mit.edu	37	9	140216934	140216935	+	Intron	INS	-	C	C	rs144308004;rs34579937	by1000genomes	2011-2318:2012-356-T	g.chr9:140216934_140216935insC	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
EHMT1	79813	broad.mit.edu	37	9	140615774	140615775	+	Intron	INS	-	C	C	rs145983596	by1000genomes	2011-2318:2012-356-T	g.chr9:140615774_140615775insC	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
CRLF2	64109	broad.mit.edu	37	X	1316493	1316496	+	Intron	DEL	CCAG	-	-			2011-2318:2012-356-T	g.chrX:1316493_1316496delCCAG	uc004cpm.1	-								
SCNN1D	6339	broad.mit.edu	37	1	1225515	1225516	+	Intron	DEL	TC	-	-			2011-2319:2012-355-T	g.chr1:1225515_1225516delTC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
CASZ1	54897	broad.mit.edu	37	1	10804785	10804788	+	Intron	DEL	GGGC	-	-	rs148489185		2011-2319:2012-355-T	g.chr1:10804785_10804788delGGGC	uc001aro.2	-						CASZ1_uc001arp.1_Intron	NM_001079843	NP_001073312
FAIM3	9214	broad.mit.edu	37	1	207098072	207098073	+	5'Flank	INS	-	GT	GT	rs141007002	by1000genomes	2011-2319:2012-355-T	g.chr1:207098072_207098073insGT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
TRAF3IP3	80342	broad.mit.edu	37	1	209944366	209944367	+	Intron	DEL	TG	-	-			2011-2319:2012-355-T	g.chr1:209944366_209944367delTG	uc001hho.2	+						TRAF3IP3_uc001hhl.2_Intron|TRAF3IP3_uc001hhm.1_Intron|TRAF3IP3_uc001hhn.2_Intron|TRAF3IP3_uc009xcr.2_Intron	NM_025228	NP_079504
WNT9A	7483	broad.mit.edu	37	1	228122741	228122742	+	Intron	DEL	AG	-	-	rs68033125		2011-2319:2012-355-T	g.chr1:228122741_228122742delAG	uc001hri.2	-							NM_003395	NP_003386
RYR2	6262	broad.mit.edu	37	1	237952826	237952827	+	Intron	INS	-	ATTA	ATTA	rs145040623;rs35838826	by1000genomes	2011-2319:2012-355-T	g.chr1:237952826_237952827insATTA	uc001hyl.1	+						RYR2_uc010pyb.1_5'Flank	NM_001035	NP_001026
FMN2	56776	broad.mit.edu	37	1	240348419	240348419	+	Intron	DEL	C	-	-	rs56349225		2011-2319:2012-355-T	g.chr1:240348419delC	uc010pyd.1	+						FMN2_uc010pye.1_Intron	NM_020066	NP_064450
CCDC6	8030	broad.mit.edu	37	10	61641875	61641876	+	Intron	DEL	GG	-	-	rs71185292;rs28551616		2011-2319:2012-355-T	g.chr10:61641875_61641876delGG	uc001jks.3	-							NM_005436	NP_005427
PTEN	5728	broad.mit.edu	37	10	89626375	89626376	+	Intron	INS	-	C	C	rs142681768;rs66749138	by1000genomes	2011-2319:2012-355-T	g.chr10:89626375_89626376insC	uc001kfb.2	+							NM_000314	NP_000305
C10orf81	79949	broad.mit.edu	37	10	115541171	115541172	+	3'UTR	DEL	CT	-	-			2011-2319:2012-355-T	g.chr10:115541171_115541172delCT	uc009xyc.1	+	13					C10orf81_uc001lar.1_3'UTR|C10orf81_uc001las.1_3'UTR|C10orf81_uc001lau.1_3'UTR|C10orf81_uc001lav.2_5'Flank		
C10orf81	79949	broad.mit.edu	37	10	115541316	115541317	+	3'UTR	INS	-	A	A			2011-2319:2012-355-T	g.chr10:115541316_115541317insA	uc009xyc.1	+	13					C10orf81_uc001lar.1_3'UTR|C10orf81_uc001las.1_3'UTR|C10orf81_uc001lau.1_3'UTR|C10orf81_uc001lav.2_5'Flank		
FGFR2	2263	broad.mit.edu	37	10	123263119	123263119	+	Intron	DEL	T	-	-			2011-2319:2012-355-T	g.chr10:123263119delT	uc010qtk.1	-						FGFR2_uc010qtg.1_Intron|FGFR2_uc010qth.1_Intron|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Intron|FGFR2_uc010qtl.1_Intron|FGFR2_uc010qtm.1_Intron|FGFR2_uc001lfl.3_Intron|FGFR2_uc001lfm.2_Intron|FGFR2_uc001lfg.3_Intron	NM_000141	NP_000132
CHST15	51363	broad.mit.edu	37	10	125803456	125803456	+	Intron	DEL	G	-	-			2011-2319:2012-355-T	g.chr10:125803456delG	uc001lhl.2	-						CHST15_uc001lhm.2_Intron|CHST15_uc001lhn.2_Intron|CHST15_uc010que.1_Intron|CHST15_uc001lho.2_Intron	NM_015892	NP_056976
C10orf90	118611	broad.mit.edu	37	10	128190512	128190513	+	Intron	DEL	AC	-	-			2011-2319:2012-355-T	g.chr10:128190512_128190513delAC	uc001ljq.2	-						C10orf90_uc001ljp.2_Intron|C10orf90_uc010qum.1_Intron|C10orf90_uc009yao.2_Intron	NM_001004298	NP_001004298
DOCK1	1793	broad.mit.edu	37	10	129195349	129195350	+	Intron	DEL	TA	-	-			2011-2319:2012-355-T	g.chr10:129195349_129195350delTA	uc001ljt.2	+						DOCK1_uc010qun.1_Intron|DOCK1_uc009yaq.2_Intron	NM_001380	NP_001371
JAKMIP3	282973	broad.mit.edu	37	10	133987435	133987437	+	Intron	DEL	TGG	-	-			2011-2319:2012-355-T	g.chr10:133987435_133987437delTGG	uc001lkx.3	+						JAKMIP3_uc001lky.1_Intron	NM_001105521	NP_001098991
INPP5A	3632	broad.mit.edu	37	10	134438019	134438020	+	Intron	INS	-	C	C	rs113440212		2011-2319:2012-355-T	g.chr10:134438019_134438020insC	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
INPP5A	3632	broad.mit.edu	37	10	134566115	134566116	+	Intron	DEL	GT	-	-			2011-2319:2012-355-T	g.chr10:134566115_134566116delGT	uc001llp.2	+						INPP5A_uc001llo.1_Intron|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530
MUC5B	727897	broad.mit.edu	37	11	1142318	1142319	+	5'Flank	INS	-	GT	GT	rs113052806		2011-2319:2012-355-T	g.chr11:1142318_1142319insGT	uc009ycr.1	+							NM_017511	NP_059981
BRSK2	9024	broad.mit.edu	37	11	1415886	1415887	+	Intron	INS	-	C	C			2011-2319:2012-355-T	g.chr11:1415886_1415887insC	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron	NM_003957	NP_003948
CTSD	1509	broad.mit.edu	37	11	1775854	1775854	+	Intron	DEL	C	-	-	rs149957779	by1000genomes	2011-2319:2012-355-T	g.chr11:1775854delC	uc001luc.1	-						CTSD_uc009yda.1_Intron	NM_001909	NP_001900
MACROD1	28992	broad.mit.edu	37	11	63777768	63777769	+	Intron	INS	-	GTTG	GTTG	rs143109582	by1000genomes	2011-2319:2012-355-T	g.chr11:63777768_63777769insGTTG	uc001nyh.2	-							NM_014067	NP_054786
SLC22A12	116085	broad.mit.edu	37	11	64363529	64363532	+	Intron	DEL	GATG	-	-			2011-2319:2012-355-T	g.chr11:64363529_64363532delGATG	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
IGSF9B	22997	broad.mit.edu	37	11	133810045	133810046	+	Intron	DEL	AA	-	-			2011-2319:2012-355-T	g.chr11:133810045_133810046delAA	uc001qgx.3	-						IGSF9B_uc001qgy.1_5'Flank	NM_014987	NP_055802
IGSF9B	22997	broad.mit.edu	37	11	133810157	133810158	+	Intron	DEL	CG	-	-	rs147576560		2011-2319:2012-355-T	g.chr11:133810157_133810158delCG	uc001qgx.3	-						IGSF9B_uc001qgy.1_5'Flank	NM_014987	NP_055802
B4GALNT3	283358	broad.mit.edu	37	12	620896	620896	+	Intron	DEL	C	-	-			2011-2319:2012-355-T	g.chr12:620896delC	uc001qii.1	+							NM_173593	NP_775864
B4GALNT3	283358	broad.mit.edu	37	12	620907	620910	+	Intron	DEL	CCAC	-	-			2011-2319:2012-355-T	g.chr12:620907_620910delCCAC	uc001qii.1	+							NM_173593	NP_775864
B4GALNT3	283358	broad.mit.edu	37	12	620920	620921	+	Intron	INS	-	C	C			2011-2319:2012-355-T	g.chr12:620920_620921insC	uc001qii.1	+							NM_173593	NP_775864
TSPAN9	10867	broad.mit.edu	37	12	3307988	3307988	+	Intron	DEL	C	-	-			2011-2319:2012-355-T	g.chr12:3307988delC	uc001qlp.2	+							NM_006675	NP_006666
TSPAN9	10867	broad.mit.edu	37	12	3378433	3378434	+	Intron	INS	-	CTCT	CTCT			2011-2319:2012-355-T	g.chr12:3378433_3378434insCTCT	uc001qlp.2	+							NM_006675	NP_006666
TMEM120B	144404	broad.mit.edu	37	12	122186134	122186135	+	Intron	DEL	CA	-	-	rs63725760		2011-2319:2012-355-T	g.chr12:122186134_122186135delCA	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
NCOR2	9612	broad.mit.edu	37	12	124952931	124952933	+	Intron	DEL	TCC	-	-			2011-2319:2012-355-T	g.chr12:124952931_124952933delTCC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
NCOR2	9612	broad.mit.edu	37	12	124953129	124953129	+	Intron	DEL	C	-	-			2011-2319:2012-355-T	g.chr12:124953129delC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
TMEM132D	121256	broad.mit.edu	37	12	129988543	129988544	+	Intron	INS	-	TCA	TCA	rs141085342;rs149583103		2011-2319:2012-355-T	g.chr12:129988543_129988544insTCA	uc009zyl.1	-							NM_133448	NP_597705
PIWIL1	9271	broad.mit.edu	37	12	130837867	130837868	+	Intron	INS	-	TTG	TTG	rs113853709;rs141217804		2011-2319:2012-355-T	g.chr12:130837867_130837868insTTG	uc001uik.2	+						PIWIL1_uc001uij.1_Intron	NM_004764	NP_004755
RB1	5925	broad.mit.edu	37	13	49034038	49034038	+	Intron	DEL	T	-	-			2011-2319:2012-355-T	g.chr13:49034038delT	uc001vcb.2	+							NM_000321	NP_000312
F7	2155	broad.mit.edu	37	13	113761997	113761998	+	Intron	INS	-	T	T			2011-2319:2012-355-T	g.chr13:113761997_113761998insT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113766100	113766107	+	Intron	DEL	CAAGACAC	-	-			2011-2319:2012-355-T	g.chr13:113766100_113766107delCAAGACAC	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113766114	113766115	+	Intron	DEL	CG	-	-			2011-2319:2012-355-T	g.chr13:113766114_113766115delCG	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113766163	113766164	+	Intron	INS	-	CACT	CACT	rs12871779		2011-2319:2012-355-T	g.chr13:113766163_113766164insCACT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
F7	2155	broad.mit.edu	37	13	113766366	113766367	+	Intron	INS	-	CT	CT			2011-2319:2012-355-T	g.chr13:113766366_113766367insCT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
SYNE2	23224	broad.mit.edu	37	14	64636830	64636831	+	Intron	INS	-	T	T			2011-2319:2012-355-T	g.chr14:64636830_64636831insT	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron	NM_015180	NP_055995
SYNE2	23224	broad.mit.edu	37	14	64681849	64681850	+	Intron	INS	-	A	A	rs141530850;rs34764844		2011-2319:2012-355-T	g.chr14:64681849_64681850insA	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc001xgn.2_Intron|SYNE2_uc001xgo.2_Intron|SYNE2_uc010aqa.2_Intron|SYNE2_uc001xgq.2_Intron|SYNE2_uc001xgr.2_Intron|SYNE2_uc010tsi.1_Intron|SYNE2_uc001xgs.2_Intron|SYNE2_uc001xgt.2_5'Flank	NM_015180	NP_055995
RIN3	79890	broad.mit.edu	37	14	93106555	93106558	+	Intron	DEL	CTGA	-	-	rs113342845		2011-2319:2012-355-T	g.chr14:93106555_93106558delCTGA	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
SV2B	9899	broad.mit.edu	37	15	91806461	91806462	+	Intron	INS	-	AC	AC	rs144549827	by1000genomes	2011-2319:2012-355-T	g.chr15:91806461_91806462insAC	uc002bqv.2	+						SV2B_uc002bqt.2_Intron|SV2B_uc010uqv.1_Intron|SV2B_uc002bqu.3_Intron	NM_014848	NP_055663
LRRK1	79705	broad.mit.edu	37	15	101481532	101481533	+	Intron	DEL	TC	-	-	rs12913414		2011-2319:2012-355-T	g.chr15:101481532_101481533delTC	uc002bwr.2	+						LRRK1_uc010usb.1_Intron|LRRK1_uc010usc.1_Intron|LRRK1_uc002bwq.1_Intron	NM_024652	NP_078928
RAB11FIP3	9727	broad.mit.edu	37	16	554512	554513	+	Intron	INS	-	G	G			2011-2319:2012-355-T	g.chr16:554512_554513insG	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
SOLH	6650	broad.mit.edu	37	16	594701	594702	+	Intron	INS	-	CGT	CGT			2011-2319:2012-355-T	g.chr16:594701_594702insCGT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
SOLH	6650	broad.mit.edu	37	16	594715	594716	+	Intron	INS	-	CGT	CGT			2011-2319:2012-355-T	g.chr16:594715_594716insCGT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
SOLH	6650	broad.mit.edu	37	16	594831	594832	+	Intron	INS	-	T	T	rs11444365		2011-2319:2012-355-T	g.chr16:594831_594832insT	uc002chi.2	+						SOLH_uc002chh.1_Intron	NM_005632	NP_005623
LMF1	64788	broad.mit.edu	37	16	999095	999097	+	Intron	DEL	AAT	-	-	rs34042470		2011-2319:2012-355-T	g.chr16:999095_999097delAAT	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
MAPK8IP3	23162	broad.mit.edu	37	16	1786322	1786323	+	Intron	INS	-	CCGT	CCGT			2011-2319:2012-355-T	g.chr16:1786322_1786323insCCGT	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
MAPK8IP3	23162	broad.mit.edu	37	16	1787246	1787247	+	Intron	INS	-	CCGT	CCGT			2011-2319:2012-355-T	g.chr16:1787246_1787247insCCGT	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
MAPK8IP3	23162	broad.mit.edu	37	16	1788431	1788432	+	Intron	DEL	GA	-	-			2011-2319:2012-355-T	g.chr16:1788431_1788432delGA	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
MAPK8IP3	23162	broad.mit.edu	37	16	1790072	1790073	+	Intron	INS	-	GT	GT	rs147521986		2011-2319:2012-355-T	g.chr16:1790072_1790073insGT	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
CYLD	1540	broad.mit.edu	37	16	50820433	50820434	+	Intron	INS	-	GCCGAGGT	GCCGAGGT	rs144289265;rs149194721	by1000genomes	2011-2319:2012-355-T	g.chr16:50820433_50820434insGCCGAGGT	uc002egp.1	+						CYLD_uc002ego.2_3'UTR|CYLD_uc010cbs.1_Intron|CYLD_uc002egq.1_Intron|CYLD_uc002egr.1_Intron|CYLD_uc002egs.1_Intron	NM_015247	NP_056062
KLHDC4	54758	broad.mit.edu	37	16	87772364	87772365	+	Intron	DEL	CA	-	-			2011-2319:2012-355-T	g.chr16:87772364_87772365delCA	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
KLHDC4	54758	broad.mit.edu	37	16	87772475	87772476	+	Intron	DEL	CA	-	-			2011-2319:2012-355-T	g.chr16:87772475_87772476delCA	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
NXN	64359	broad.mit.edu	37	17	713267	713268	+	Intron	DEL	AA	-	-	rs77371838	by1000genomes	2011-2319:2012-355-T	g.chr17:713267_713268delAA	uc002fsa.2	-						NXN_uc010vqd.1_Intron|NXN_uc002frz.2_Intron|NXN_uc010vqe.1_Intron	NM_022463	NP_071908
NXN	64359	broad.mit.edu	37	17	716102	716103	+	Intron	DEL	GT	-	-	rs68154102		2011-2319:2012-355-T	g.chr17:716102_716103delGT	uc002fsa.2	-						NXN_uc010vqd.1_Intron|NXN_uc002frz.2_Intron|NXN_uc010vqe.1_Intron	NM_022463	NP_071908
NXN	64359	broad.mit.edu	37	17	852913	852913	+	Intron	DEL	C	-	-	rs142569223	by1000genomes	2011-2319:2012-355-T	g.chr17:852913delC	uc002fsa.2	-							NM_022463	NP_071908
TIMM22	29928	broad.mit.edu	37	17	897498	897498	+	5'Flank	DEL	C	-	-			2011-2319:2012-355-T	g.chr17:897498delC	uc002fsc.2	+							NM_013337	NP_037469
JUP	3728	broad.mit.edu	37	17	39754467	39754468	+	Intron	INS	-	GTG	GTG	rs147722417	by1000genomes	2011-2319:2012-355-T	g.chr17:39754467_39754468insGTG	uc010wfs.1	-							NM_021991	NP_068831
JUP	3728	broad.mit.edu	37	17	39755356	39755358	+	Intron	DEL	TGG	-	-			2011-2319:2012-355-T	g.chr17:39755356_39755358delTGG	uc010wfs.1	-							NM_021991	NP_068831
RAB37	326624	broad.mit.edu	37	17	72729616	72729617	+	Intron	DEL	GT	-	-			2011-2319:2012-355-T	g.chr17:72729616_72729617delGT	uc010dfu.2	+						RAB37_uc002jlc.2_Intron|RAB37_uc002jld.2_Intron	NM_175738	NP_783865
AATK	9625	broad.mit.edu	37	17	79114473	79114474	+	Intron	DEL	GA	-	-			2011-2319:2012-355-T	g.chr17:79114473_79114474delGA	uc010dia.2	-							NM_001080395	NP_001073864
AATK	9625	broad.mit.edu	37	17	79114560	79114561	+	Intron	INS	-	A	A	rs144645484	by1000genomes	2011-2319:2012-355-T	g.chr17:79114560_79114561insA	uc010dia.2	-							NM_001080395	NP_001073864
TBCD	6904	broad.mit.edu	37	17	80806756	80806756	+	Intron	DEL	C	-	-	rs67238067		2011-2319:2012-355-T	g.chr17:80806756delC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TYMS	7298	broad.mit.edu	37	18	667251	667251	+	Intron	DEL	T	-	-	rs207950		2011-2319:2012-355-T	g.chr18:667251delT	uc010dka.1	+						TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062
LAMA1	284217	broad.mit.edu	37	18	6986110	6986112	+	Intron	DEL	AGA	-	-			2011-2319:2012-355-T	g.chr18:6986110_6986112delAGA	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
GALR1	2587	broad.mit.edu	37	18	74970733	74970735	+	Intron	DEL	TGG	-	-			2011-2319:2012-355-T	g.chr18:74970733_74970735delTGG	uc002lms.3	+							NM_001480	NP_001471
KCNG2	26251	broad.mit.edu	37	18	77625325	77625326	+	Intron	DEL	GA	-	-	rs10612369		2011-2319:2012-355-T	g.chr18:77625325_77625326delGA	uc010xfl.1	+							NM_012283	NP_036415
TCF3	6929	broad.mit.edu	37	19	1628152	1628153	+	Intron	INS	-	G	G			2011-2319:2012-355-T	g.chr19:1628152_1628153insG	uc002ltr.2	-						TCF3_uc002ltt.3_Intron|TCF3_uc002ltq.2_Intron|TCF3_uc002lts.1_Intron	NM_003200	NP_003191
SPPL2B	56928	broad.mit.edu	37	19	2336898	2336899	+	Intron	DEL	GT	-	-	rs150473920		2011-2319:2012-355-T	g.chr19:2336898_2336899delGT	uc002lvs.2	+						SPPL2B_uc010dsw.1_Intron|SPPL2B_uc010dsy.1_Intron|SPPL2B_uc010dsz.1_Intron|SPPL2B_uc002lvr.2_Intron|SPPL2B_uc010dta.1_5'Flank|SPPL2B_uc002lvu.2_5'Flank	NM_152988	NP_694533
ZSCAN22	342945	broad.mit.edu	37	19	58838050	58838051	+	5'Flank	INS	-	T	T	rs71190023;rs67127736		2011-2319:2012-355-T	g.chr19:58838050_58838051insT	uc002qsc.2	+							NM_181846	NP_862829
ZSCAN22	342945	broad.mit.edu	37	19	58838071	58838071	+	5'Flank	DEL	T	-	-	rs1265986		2011-2319:2012-355-T	g.chr19:58838071delT	uc002qsc.2	+							NM_181846	NP_862829
ZSCAN22	342945	broad.mit.edu	37	19	58838145	58838146	+	5'Flank	INS	-	T	T			2011-2319:2012-355-T	g.chr19:58838145_58838146insT	uc002qsc.2	+							NM_181846	NP_862829
SH3YL1	26751	broad.mit.edu	37	2	235395	235396	+	Intron	INS	-	GCA	GCA			2011-2319:2012-355-T	g.chr2:235395_235396insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
SH3YL1	26751	broad.mit.edu	37	2	235515	235516	+	Intron	INS	-	GCA	GCA			2011-2319:2012-355-T	g.chr2:235515_235516insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
SH3YL1	26751	broad.mit.edu	37	2	235991	235992	+	Intron	INS	-	GCA	GCA			2011-2319:2012-355-T	g.chr2:235991_235992insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
TSSC1	7260	broad.mit.edu	37	2	3203578	3203579	+	Intron	INS	-	GA	GA	rs142971768	by1000genomes	2011-2319:2012-355-T	g.chr2:3203578_3203579insGA	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
BCL11A	53335	broad.mit.edu	37	2	60694375	60694376	+	Intron	INS	-	TGG	TGG			2011-2319:2012-355-T	g.chr2:60694375_60694376insTGG	uc002sae.1	-						BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Intron|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044
DYSF	8291	broad.mit.edu	37	2	71845059	71845060	+	Intron	INS	-	GGTGG	GGTGG			2011-2319:2012-355-T	g.chr2:71845059_71845060insGGTGG	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845199	71845200	+	Intron	INS	-	GT	GT			2011-2319:2012-355-T	g.chr2:71845199_71845200insGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845604	71845605	+	Intron	INS	-	GT	GT	rs146080337		2011-2319:2012-355-T	g.chr2:71845604_71845605insGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
RMND5A	64795	broad.mit.edu	37	2	87623464	87623465	+	Intron	INS	-	GCCC	GCCC			2011-2319:2012-355-T	g.chr2:87623464_87623465insGCCC	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643626	87643629	+	Intron	DEL	AGCT	-	-			2011-2319:2012-355-T	g.chr2:87643626_87643629delAGCT	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87643664	87643665	+	Intron	INS	-	A	A			2011-2319:2012-355-T	g.chr2:87643664_87643665insA	uc002srs.3	+								
TTN	7273	broad.mit.edu	37	2	179672477	179672478	+	5'Flank	DEL	CC	-	-	rs72647838		2011-2319:2012-355-T	g.chr2:179672477_179672478delCC	uc002und.2	-						TTN_uc010zfg.1_5'Flank|TTN_uc010zfh.1_5'Flank|TTN_uc010zfi.1_5'Flank|TTN_uc010zfj.1_5'Flank|TTN_uc002unb.2_5'Flank		
PMS1	5378	broad.mit.edu	37	2	190650302	190650304	+	Intron	DEL	AAA	-	-			2011-2319:2012-355-T	g.chr2:190650302_190650304delAAA	uc002urh.3	+						PMS1_uc010zga.1_Intron|PMS1_uc010zgb.1_Intron|PMS1_uc002urk.3_Intron|PMS1_uc002uri.3_Intron|PMS1_uc010zgc.1_Intron|PMS1_uc010zgd.1_Intron|PMS1_uc002urj.2_Intron|ORMDL1_uc002urb.3_5'Flank|ORMDL1_uc002urc.3_5'Flank|ORMDL1_uc002urd.3_5'Flank|ORMDL1_uc002ure.3_5'Flank|ORMDL1_uc002urf.3_5'Flank|PMS1_uc010zfz.1_Intron	NM_000534	NP_000525
STAT1	6772	broad.mit.edu	37	2	191878116	191878116	+	Intron	DEL	G	-	-	rs45486795		2011-2319:2012-355-T	g.chr2:191878116delG	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron|STAT1_uc010fsf.1_Intron	NM_007315	NP_009330
SPAG16	79582	broad.mit.edu	37	2	214272618	214272621	+	Intron	DEL	AGAC	-	-	rs138394422		2011-2319:2012-355-T	g.chr2:214272618_214272621delAGAC	uc002veq.2	+						SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Intron|SPAG16_uc010zjk.1_Intron	NM_024532	NP_078808
CUL3	8452	broad.mit.edu	37	2	225378502	225378502	+	Intron	DEL	G	-	-	rs3215058		2011-2319:2012-355-T	g.chr2:225378502delG	uc002vny.2	-						CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Intron	NM_003590	NP_003581
MLPH	79083	broad.mit.edu	37	2	238452035	238452035	+	Intron	DEL	A	-	-			2011-2319:2012-355-T	g.chr2:238452035delA	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
AGXT	189	broad.mit.edu	37	2	241811775	241811777	+	Intron	DEL	GGC	-	-	rs67019338		2011-2319:2012-355-T	g.chr2:241811775_241811777delGGC	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
AGXT	189	broad.mit.edu	37	2	241811807	241811809	+	Intron	DEL	GGT	-	-	rs62189565	by1000genomes	2011-2319:2012-355-T	g.chr2:241811807_241811809delGGT	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
THAP4	51078	broad.mit.edu	37	2	242559574	242559575	+	Intron	INS	-	A	A			2011-2319:2012-355-T	g.chr2:242559574_242559575insA	uc002wbt.2	-						THAP4_uc002wbs.2_5'Flank	NM_015963	NP_057047
CDH4	1002	broad.mit.edu	37	20	59951104	59951105	+	Intron	INS	-	TGG	TGG			2011-2319:2012-355-T	g.chr20:59951104_59951105insTGG	uc002ybn.1	+							NM_001794	NP_001785
BAGE2	85319	broad.mit.edu	37	21	11021019	11021020	+	Intron	DEL	AA	-	-			2011-2319:2012-355-T	g.chr21:11021019_11021020delAA	uc002yit.1	-						TPTE_uc002yis.1_Intron	NM_182482	NP_872288
ADAMTS5	11096	broad.mit.edu	37	21	28338953	28338954	+	5'UTR	DEL	GG	-	-			2011-2319:2012-355-T	g.chr21:28338953_28338954delGG	uc002ymg.2	-	1						NM_007038	NP_008969
SFRS15	57466	broad.mit.edu	37	21	33044277	33044279	+	In_Frame_Del	DEL	TGT	-	-			2011-2319:2012-355-T	g.chr21:33044277_33044279delTGT	uc002ypd.2	-	20	3303_3305	c.2877_2879delACA	c.(2875-2880)CCACAG>CCG	p.Q966del	SFRS15_uc002ype.2_In_Frame_Del_p.Q944del|SFRS15_uc010glu.2_In_Frame_Del_p.Q951del	NM_020706	NP_065757
DONSON	29980	broad.mit.edu	37	21	35267902	35267903	+	Intron	DEL	TG	-	-			2011-2319:2012-355-T	g.chr21:35267902_35267903delTG	uc002ysn.1	-								
TRPM2	7226	broad.mit.edu	37	21	45816126	45816126	+	Intron	DEL	G	-	-			2011-2319:2012-355-T	g.chr21:45816126delG	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron	NM_003307	NP_003298
COL18A1	80781	broad.mit.edu	37	21	46903996	46903997	+	Intron	INS	-	AC	AC	rs140323183;rs67197900	by1000genomes	2011-2319:2012-355-T	g.chr21:46903996_46903997insAC	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron	NM_130444	NP_569711
PARVB	29780	broad.mit.edu	37	22	44550819	44550820	+	Intron	INS	-	TG	TG	rs140446126	by1000genomes	2011-2319:2012-355-T	g.chr22:44550819_44550820insTG	uc003ben.2	+						PARVB_uc003bem.2_Intron|PARVB_uc010gzn.2_Intron|PARVB_uc003beo.2_Intron	NM_013327	NP_037459
TTC38	55020	broad.mit.edu	37	22	46686481	46686483	+	Intron	DEL	AGG	-	-	rs66702225		2011-2319:2012-355-T	g.chr22:46686481_46686483delAGG	uc003bhi.2	+						TTC38_uc011aqx.1_Intron	NM_017931	NP_060401
PDIA5	10954	broad.mit.edu	37	3	122870581	122870582	+	Intron	INS	-	CCTG	CCTG	rs71798258		2011-2319:2012-355-T	g.chr3:122870581_122870582insCCTG	uc003egc.1	+						PDIA5_uc003egd.1_Intron	NM_006810	NP_006801
IFT122	55764	broad.mit.edu	37	3	129235585	129235586	+	Intron	DEL	CA	-	-			2011-2319:2012-355-T	g.chr3:129235585_129235586delCA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
GMPS	8833	broad.mit.edu	37	3	155588171	155588172	+	5'Flank	INS	-	C	C	rs147214770;rs33978589	by1000genomes	2011-2319:2012-355-T	g.chr3:155588171_155588172insC	uc003faq.2	+						GMPS_uc011bom.1_5'Flank	NM_003875	NP_003866
PIK3CA	5290	broad.mit.edu	37	3	178865774	178865775	+	5'Flank	INS	-	C	C	rs144390116;rs67786336	by1000genomes	2011-2319:2012-355-T	g.chr3:178865774_178865775insC	uc003fjk.2	+						uc003fjj.2_5'Flank	NM_006218	NP_006209
LMLN	89782	broad.mit.edu	37	3	197765731	197765731	+	3'UTR	DEL	T	-	-			2011-2319:2012-355-T	g.chr3:197765731delT	uc011buo.1	+	16					LMLN_uc003fyt.2_3'UTR|LMLN_uc010iar.2_3'UTR|LMLN_uc010ias.2_3'UTR|LMLN_uc003fyu.2_3'UTR	NM_033029	NP_149018
FAM53A	152877	broad.mit.edu	37	4	1651661	1651664	+	Intron	DEL	TGAC	-	-			2011-2319:2012-355-T	g.chr4:1651661_1651664delTGAC	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
HTT	3064	broad.mit.edu	37	4	3101357	3101358	+	Intron	INS	-	TG	TG	rs10665872		2011-2319:2012-355-T	g.chr4:3101357_3101358insTG	uc011bvq.1	+							NM_002111	NP_002102
SH3TC1	54436	broad.mit.edu	37	4	8241032	8241037	+	Intron	DEL	ACACAG	-	-	rs10532430		2011-2319:2012-355-T	g.chr4:8241032_8241037delACACAG	uc003gkv.3	+						SH3TC1_uc003gkw.3_Intron|SH3TC1_uc003gkx.3_Intron|SH3TC1_uc003gky.2_Intron	NM_018986	NP_061859
ACOX3	8310	broad.mit.edu	37	4	8411334	8411335	+	Intron	INS	-	GC	GC			2011-2319:2012-355-T	g.chr4:8411334_8411335insGC	uc010idk.2	-						ACOX3_uc003glc.3_Intron|ACOX3_uc003gld.3_Intron|ACOX3_uc003gle.1_Intron	NM_003501	NP_003492
PDCD6	10016	broad.mit.edu	37	5	298757	298758	+	Intron	INS	-	A	A			2011-2319:2012-355-T	g.chr5:298757_298758insA	uc003jat.1	+						PDCD6_uc003jau.1_Intron	NM_013232	NP_037364
CEP72	55722	broad.mit.edu	37	5	648709	648710	+	Intron	DEL	TG	-	-			2011-2319:2012-355-T	g.chr5:648709_648710delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649836	649837	+	Intron	DEL	CG	-	-	rs142629110		2011-2319:2012-355-T	g.chr5:649836_649837delCG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650352	650352	+	Intron	DEL	A	-	-			2011-2319:2012-355-T	g.chr5:650352delA	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650771	650772	+	Intron	DEL	TG	-	-			2011-2319:2012-355-T	g.chr5:650771_650772delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651188	651189	+	Intron	INS	-	G	G			2011-2319:2012-355-T	g.chr5:651188_651189insG	uc003jbf.2	+							NM_018140	NP_060610
NKD2	85409	broad.mit.edu	37	5	1026064	1026065	+	Intron	INS	-	A	A			2011-2319:2012-355-T	g.chr5:1026064_1026065insA	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
NKD2	85409	broad.mit.edu	37	5	1037066	1037067	+	Intron	DEL	GT	-	-	rs67132510		2011-2319:2012-355-T	g.chr5:1037066_1037067delGT	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
SLC12A7	10723	broad.mit.edu	37	5	1070406	1070407	+	Intron	INS	-	G	G	rs67432907;rs66939782		2011-2319:2012-355-T	g.chr5:1070406_1070407insG	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072547	1072547	+	Intron	DEL	G	-	-			2011-2319:2012-355-T	g.chr5:1072547delG	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1273198	1273199	+	Intron	DEL	CA	-	-	rs72327925		2011-2319:2012-355-T	g.chr5:1273198_1273199delCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
ADAMTS16	170690	broad.mit.edu	37	5	5305468	5305469	+	Intron	INS	-	CA	CA	rs140501036	by1000genomes	2011-2319:2012-355-T	g.chr5:5305468_5305469insCA	uc003jdl.2	+							NM_139056	NP_620687
CTNND2	1501	broad.mit.edu	37	5	11181977	11181977	+	Intron	DEL	T	-	-	rs146192898	by1000genomes	2011-2319:2012-355-T	g.chr5:11181977delT	uc003jfa.1	-						CTNND2_uc010itt.2_Intron|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron|CTNND2_uc011cmx.1_Intron	NM_001332	NP_001323
ADAMTS12	81792	broad.mit.edu	37	5	33627479	33627481	+	Intron	DEL	TGG	-	-	rs149668162		2011-2319:2012-355-T	g.chr5:33627479_33627481delTGG	uc003jia.1	-						ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217
RASA1	5921	broad.mit.edu	37	5	86662349	86662350	+	Intron	INS	-	A	A	rs138131892	by1000genomes	2011-2319:2012-355-T	g.chr5:86662349_86662350insA	uc003kiw.2	+						RASA1_uc010jav.2_Intron|RASA1_uc003kix.2_Intron|RASA1_uc011ctv.1_Intron|RASA1_uc011ctw.1_Intron|RASA1_uc010jaw.2_Intron	NM_002890	NP_002881
HMP19	51617	broad.mit.edu	37	5	173495544	173495545	+	Intron	INS	-	TC	TC	rs148558065	by1000genomes	2011-2319:2012-355-T	g.chr5:173495544_173495545insTC	uc003mcx.2	+							NM_015980	NP_057064
ADAMTS2	9509	broad.mit.edu	37	5	178742326	178742327	+	Intron	INS	-	TG	TG			2011-2319:2012-355-T	g.chr5:178742326_178742327insTG	uc003mjw.2	-						ADAMTS2_uc011dgm.1_Intron	NM_014244	NP_055059
BPHL	670	broad.mit.edu	37	6	3146132	3146133	+	Intron	INS	-	G	G			2011-2319:2012-355-T	g.chr6:3146132_3146133insG	uc003mva.2	+						BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Intron	NM_004332	NP_004323
HLA-G	3135	broad.mit.edu	37	6	29909251	29909252	+	Intron	INS	-	A	A	rs141294580;rs9280787	by1000genomes	2011-2319:2012-355-T	g.chr6:29909251_29909252insA	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
HLA-A	3105	broad.mit.edu	37	6	29911587	29911588	+	Intron	INS	-	A	A	rs9280789;rs17179480		2011-2319:2012-355-T	g.chr6:29911587_29911588insA	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Intron|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_Intron	NM_002116	NP_002107
HLA-A	3105	broad.mit.edu	37	6	29911588	29911589	+	Intron	INS	-	ACA	ACA	rs17179480;rs41542314		2011-2319:2012-355-T	g.chr6:29911588_29911589insACA	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Intron|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_Intron	NM_002116	NP_002107
HLA-C	3107	broad.mit.edu	37	6	31239151	31239151	+	Intron	DEL	A	-	-	rs67420880		2011-2319:2012-355-T	g.chr6:31239151delA	uc003nsy.2	-						HLA-C_uc011dnj.1_Intron|HLA-C_uc003nsx.2_5'UTR|HLA-C_uc003nsz.2_Intron|HLA-C_uc010jsl.2_Intron|HLA-C_uc003nta.2_Intron|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Intron|HLA-B_uc003ntf.2_Intron	NM_002117	NP_002108
HLA-B	3106	broad.mit.edu	37	6	31321781	31321784	+	3'UTR	DEL	AAGT	-	-			2011-2319:2012-355-T	g.chr6:31321781_31321784delAAGT	uc003nth.2	-	8					HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_3'UTR	NM_005514	NP_005505
PACRG	135138	broad.mit.edu	37	6	163296218	163296219	+	Intron	DEL	CA	-	-	rs149517993		2011-2319:2012-355-T	g.chr6:163296218_163296219delCA	uc003qua.2	+						PACRG_uc003qub.2_Intron|PACRG_uc003quc.2_Intron	NM_152410	NP_689623
SMOC2	64094	broad.mit.edu	37	6	169015281	169015282	+	Intron	DEL	GG	-	-			2011-2319:2012-355-T	g.chr6:169015281_169015282delGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
C7orf50	84310	broad.mit.edu	37	7	1042516	1042517	+	Intron	INS	-	A	A			2011-2319:2012-355-T	g.chr7:1042516_1042517insA	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1051069	1051070	+	Intron	INS	-	CA	CA	rs144280116;rs72401755	by1000genomes	2011-2319:2012-355-T	g.chr7:1051069_1051070insCA	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1110189	1110190	+	Intron	DEL	CA	-	-			2011-2319:2012-355-T	g.chr7:1110189_1110190delCA	uc003sju.2	-						C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1110263	1110264	+	Intron	INS	-	A	A	rs141155109	by1000genomes	2011-2319:2012-355-T	g.chr7:1110263_1110264insA	uc003sju.2	-						C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
RPA3	6119	broad.mit.edu	37	7	7712942	7712944	+	Intron	DEL	AGC	-	-	rs10527750;rs5882133		2011-2319:2012-355-T	g.chr7:7712942_7712944delAGC	uc003sri.2	-						uc011jxf.1_5'UTR	NM_002947	NP_002938
AUTS2	26053	broad.mit.edu	37	7	69961434	69961435	+	Intron	INS	-	CACCCCACT	CACCCCACT			2011-2319:2012-355-T	g.chr7:69961434_69961435insCACCCCACT	uc003tvw.3	+						AUTS2_uc003tvx.3_Intron	NM_015570	NP_056385
AUTS2	26053	broad.mit.edu	37	7	69961469	69961470	+	Intron	DEL	CA	-	-			2011-2319:2012-355-T	g.chr7:69961469_69961470delCA	uc003tvw.3	+						AUTS2_uc003tvx.3_Intron	NM_015570	NP_056385
PTPRN2	5799	broad.mit.edu	37	7	157864404	157864406	+	Intron	DEL	CTG	-	-	rs148088938	by1000genomes	2011-2319:2012-355-T	g.chr7:157864404_157864406delCTG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
ERICH1	157697	broad.mit.edu	37	8	626446	626446	+	Intron	DEL	G	-	-			2011-2319:2012-355-T	g.chr8:626446delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
ARHGEF10	9639	broad.mit.edu	37	8	1780691	1780692	+	Intron	DEL	TA	-	-	rs62639090		2011-2319:2012-355-T	g.chr8:1780691_1780692delTA	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
ARHGEF10	9639	broad.mit.edu	37	8	1781156	1781157	+	Intron	DEL	AG	-	-			2011-2319:2012-355-T	g.chr8:1781156_1781157delAG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
MMP16	4325	broad.mit.edu	37	8	89340017	89340022	+	5'Flank	DEL	ACACAG	-	-	rs59013136		2011-2319:2012-355-T	g.chr8:89340017_89340022delACACAG	uc003yeb.3	-						MMP16_uc003yec.2_5'Flank	NM_005941	NP_005932
COL22A1	169044	broad.mit.edu	37	8	139754199	139754204	+	Intron	DEL	GTGATG	-	-	rs113284336;rs72316838;rs71949458		2011-2319:2012-355-T	g.chr8:139754199_139754204delGTGATG	uc003yvd.2	-						COL22A1_uc011ljo.1_Intron	NM_152888	NP_690848
COL22A1	169044	broad.mit.edu	37	8	139817035	139817036	+	Intron	INS	-	TA	TA	rs113949514;rs71316361		2011-2319:2012-355-T	g.chr8:139817035_139817036insTA	uc003yvd.2	-							NM_152888	NP_690848
COL22A1	169044	broad.mit.edu	37	8	139817380	139817381	+	Intron	DEL	GT	-	-	rs147343259		2011-2319:2012-355-T	g.chr8:139817380_139817381delGT	uc003yvd.2	-							NM_152888	NP_690848
TOP1MT	116447	broad.mit.edu	37	8	144404143	144404144	+	Intron	INS	-	CA	CA			2011-2319:2012-355-T	g.chr8:144404143_144404144insCA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
ARHGAP39	80728	broad.mit.edu	37	8	145913001	145913002	+	5'Flank	INS	-	C	C			2011-2319:2012-355-T	g.chr8:145913001_145913002insC	uc011llk.1	-							NM_025251	NP_079527
ARHGAP39	80728	broad.mit.edu	37	8	145913072	145913073	+	5'Flank	INS	-	C	C			2011-2319:2012-355-T	g.chr8:145913072_145913073insC	uc011llk.1	-							NM_025251	NP_079527
ZNF16	7564	broad.mit.edu	37	8	146172196	146172197	+	Intron	INS	-	C	C	rs77821487	by1000genomes	2011-2319:2012-355-T	g.chr8:146172196_146172197insC	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
ZNF16	7564	broad.mit.edu	37	8	146172390	146172391	+	Intron	DEL	CT	-	-	rs66905525		2011-2319:2012-355-T	g.chr8:146172390_146172391delCT	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
GOLM1	51280	broad.mit.edu	37	9	88668252	88668256	+	Intron	DEL	CCACG	-	-	rs139413631;rs117546243	by1000genomes;byFrequency;by1000genomes	2011-2319:2012-355-T	g.chr9:88668252_88668256delCCACG	uc004aol.2	-						GOLM1_uc010mqd.1_Intron|GOLM1_uc004aom.2_Intron	NM_016548	NP_057632
FIBCD1	84929	broad.mit.edu	37	9	133805822	133805823	+	Intron	INS	-	GGGGAGACGC	GGGGAGACGC	rs145492428	by1000genomes	2011-2319:2012-355-T	g.chr9:133805822_133805823insGGGGAGACGC	uc004bzz.2	-						FIBCD1_uc011mcc.1_Intron|FIBCD1_uc011mcd.1_Intron	NM_032843	NP_116232
TTF1	7270	broad.mit.edu	37	9	135253604	135253605	+	Intron	INS	-	GT	GT	rs146418873	by1000genomes	2011-2319:2012-355-T	g.chr9:135253604_135253605insGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
C9orf171	389799	broad.mit.edu	37	9	135418907	135418907	+	Intron	DEL	A	-	-	rs113401480		2011-2319:2012-355-T	g.chr9:135418907delA	uc004cbn.2	+						C9orf171_uc004cbo.2_Intron	NM_207417	NP_997300
EHMT1	79813	broad.mit.edu	37	9	140610851	140610853	+	Intron	DEL	TGG	-	-			2011-2319:2012-355-T	g.chr9:140610851_140610853delTGG	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
EHMT1	79813	broad.mit.edu	37	9	140610880	140610882	+	Intron	DEL	TGG	-	-			2011-2319:2012-355-T	g.chr9:140610880_140610882delTGG	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
EHMT1	79813	broad.mit.edu	37	9	140610909	140610911	+	Intron	DEL	TGG	-	-	rs10604097;rs111959714		2011-2319:2012-355-T	g.chr9:140610909_140610911delTGG	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
PPP2R3B	28227	broad.mit.edu	37	X	339765	339768	+	Intron	DEL	TGTG	-	-			2011-2319:2012-355-T	g.chrX:339765_339768delTGTG	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
PPP2R3B	28227	broad.mit.edu	37	X	339804	339805	+	Intron	INS	-	TG	TG			2011-2319:2012-355-T	g.chrX:339804_339805insTG	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
SHOX	6473	broad.mit.edu	37	X	583931	583933	+	5'Flank	DEL	AAG	-	-			2011-2319:2012-355-T	g.chrX:583931_583933delAAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SHOX	6473	broad.mit.edu	37	X	583942	583944	+	5'Flank	DEL	GAC	-	-			2011-2319:2012-355-T	g.chrX:583942_583944delGAC	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SHOX	6473	broad.mit.edu	37	X	583955	583955	+	5'Flank	DEL	G	-	-			2011-2319:2012-355-T	g.chrX:583955delG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
CSF2RA	1438	broad.mit.edu	37	X	1386903	1386904	+	5'Flank	DEL	AA	-	-			2011-2319:2012-355-T	g.chrX:1386903_1386904delAA	uc010nct.2	+						CSF2RA_uc011mhb.1_5'Flank|CSF2RA_uc004cpq.2_5'Flank|CSF2RA_uc004cpn.2_5'Flank|CSF2RA_uc004cpo.2_5'Flank|CSF2RA_uc010ncu.2_5'Flank|CSF2RA_uc011mhc.1_5'Flank|CSF2RA_uc004cpp.2_5'Flank	NM_001161529	NP_001155001
DHRSX	207063	broad.mit.edu	37	X	2300710	2300711	+	Intron	INS	-	CAC	CAC			2011-2319:2012-355-T	g.chrX:2300710_2300711insCAC	uc004cqf.3	-							NM_145177	NP_660160
DDX3X	1654	broad.mit.edu	37	X	41200863	41200863	+	Frame_Shift_Del	DEL	G	-	-			2011-2319:2012-355-T	g.chrX:41200863delG	uc004dfe.2	+	4	1133	c.278delG	c.(277-279)AGGfs	p.R93fs	DDX3X_uc010nhf.1_Frame_Shift_Del_p.R77fs|DDX3X_uc004dff.2_Frame_Shift_Del_p.R93fs|DDX3X_uc011mkq.1_Frame_Shift_Del_p.R77fs|DDX3X_uc011mkr.1_Frame_Shift_Del_p.R93fs|DDX3X_uc011mks.1_Frame_Shift_Del_p.R93fs|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347
ARID1A	8289	broad.mit.edu	37	1	27106384	27106385	+	Frame_Shift_Del	DEL	TT	-	-			2011-2320:2012-354-T	g.chr1:27106384_27106385delTT	uc001bmv.1	+	20	6368_6369	c.5995_5996delTT	c.(5995-5997)TTTfs	p.F1999fs	ARID1A_uc001bmu.1_Frame_Shift_Del_p.F1782fs|ARID1A_uc001bmx.1_Frame_Shift_Del_p.F845fs|ARID1A_uc009vsm.1_Frame_Shift_Del_p.F327fs|ARID1A_uc009vsn.1_Frame_Shift_Del_p.F241fs	NM_006015	NP_006006
MACF1	23499	broad.mit.edu	37	1	39806708	39806708	+	Intron	DEL	T	-	-			2011-2320:2012-354-T	g.chr1:39806708delT	uc010oiu.1	+						MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033
LOC642587	642587	broad.mit.edu	37	1	209605636	209605637	+	In_Frame_Ins	INS	-	AGC	AGC	rs146499758;rs3842530	by1000genomes	2011-2320:2012-354-T	g.chr1:209605636_209605637insAGC	uc009xcn.2	+	4	634_635	c.251_252insAGC	c.(250-252)GTA>GTAGCA	p.97_98insA		NM_001104548	NP_001098018
SLC35F3	148641	broad.mit.edu	37	1	234234084	234234086	+	Intron	DEL	TGG	-	-			2011-2320:2012-354-T	g.chr1:234234084_234234086delTGG	uc001hvy.1	+							NM_173508	NP_775779
TMEM132D	121256	broad.mit.edu	37	12	130232115	130232116	+	Intron	DEL	AC	-	-			2011-2320:2012-354-T	g.chr12:130232115_130232116delAC	uc009zyl.1	-							NM_133448	NP_597705
SLC7A1	6541	broad.mit.edu	37	13	30133609	30133609	+	Intron	DEL	G	-	-	rs71090264		2011-2320:2012-354-T	g.chr13:30133609delG	uc001uso.2	-							NM_003045	NP_003036
ATP11A	23250	broad.mit.edu	37	13	113369779	113369780	+	Intron	INS	-	C	C	rs6577113;rs11415797		2011-2320:2012-354-T	g.chr13:113369779_113369780insC	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
ATP11A	23250	broad.mit.edu	37	13	113433155	113433156	+	Intron	INS	-	GAG	GAG	rs10645190;rs67489400		2011-2320:2012-354-T	g.chr13:113433155_113433156insGAG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
INF2	64423	broad.mit.edu	37	14	105187402	105187403	+	Intron	INS	-	C	C			2011-2320:2012-354-T	g.chr14:105187402_105187403insC	uc010tyi.1	+							NM_022489	NP_071934
LRRK1	79705	broad.mit.edu	37	15	101481314	101481315	+	Intron	DEL	TG	-	-			2011-2320:2012-354-T	g.chr15:101481314_101481315delTG	uc002bwr.2	+						LRRK1_uc010usb.1_Intron|LRRK1_uc010usc.1_Intron|LRRK1_uc002bwq.1_Intron	NM_024652	NP_078928
LMF1	64788	broad.mit.edu	37	16	908332	908333	+	Intron	INS	-	C	C			2011-2320:2012-354-T	g.chr16:908332_908333insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
CHMP1A	5119	broad.mit.edu	37	16	89721890	89721891	+	Intron	INS	-	C	C			2011-2320:2012-354-T	g.chr16:89721890_89721891insC	uc002fnu.2	-						CHMP1A_uc002fnv.2_Intron|C16orf55_uc002fnw.1_5'Flank|C16orf55_uc002fnx.3_5'Flank|C16orf55_uc010vpk.1_5'Flank|C16orf55_uc002fny.1_5'Flank	NM_002768	NP_002759
TIMM22	29928	broad.mit.edu	37	17	897545	897546	+	5'Flank	INS	-	C	C	rs147504264;rs71933939		2011-2320:2012-354-T	g.chr17:897545_897546insC	uc002fsc.2	+							NM_013337	NP_037469
C17orf76	388341	broad.mit.edu	37	17	16359658	16359660	+	Intron	DEL	AGA	-	-			2011-2320:2012-354-T	g.chr17:16359658_16359660delAGA	uc010cph.1	-						C17orf76_uc002gqh.2_Intron|NCRNA00188_uc010vwl.1_Intron|NCRNA00188_uc010vwm.1_Intron|NCRNA00188_uc010vwn.1_Intron|NCRNA00188_uc010cpe.2_Intron|NCRNA00188_uc010vwo.1_Intron|NCRNA00188_uc010vwp.1_Intron	NM_001113567	NP_001107039
USP32	84669	broad.mit.edu	37	17	58289532	58289533	+	Intron	INS	-	A	A			2011-2320:2012-354-T	g.chr17:58289532_58289533insA	uc002iyo.1	-						USP32_uc002iyn.1_Intron	NM_032582	NP_115971
TIMP2	7077	broad.mit.edu	37	17	76889514	76889515	+	Intron	INS	-	GT	GT			2011-2320:2012-354-T	g.chr17:76889514_76889515insGT	uc010wty.1	-						TIMP2_uc002jwf.2_Intron|uc002jwg.1_Intron	NM_003255	NP_003246
AATK	9625	broad.mit.edu	37	17	79114810	79114817	+	Intron	DEL	GCCCATGA	-	-	rs138144727;rs143644799	by1000genomes;by1000genomes	2011-2320:2012-354-T	g.chr17:79114810_79114817delGCCCATGA	uc010dia.2	-							NM_001080395	NP_001073864
BAHCC1	57597	broad.mit.edu	37	17	79389908	79389909	+	Intron	DEL	GT	-	-			2011-2320:2012-354-T	g.chr17:79389908_79389909delGT	uc002kaf.2	+							NM_001080519	NP_001073988
B3GNTL1	146712	broad.mit.edu	37	17	80916779	80916779	+	Intron	DEL	G	-	-			2011-2320:2012-354-T	g.chr17:80916779delG	uc002kgg.1	-						B3GNTL1_uc002kgf.1_Intron|B3GNTL1_uc002kge.1_Intron	NM_001009905	NP_001009905
ZNF236	7776	broad.mit.edu	37	18	74679360	74679361	+	Intron	INS	-	GGT	GGT			2011-2320:2012-354-T	g.chr18:74679360_74679361insGGT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
ZNF236	7776	broad.mit.edu	37	18	74679557	74679558	+	Intron	INS	-	GGT	GGT	rs113352608		2011-2320:2012-354-T	g.chr18:74679557_74679558insGGT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
ZNF547	284306	broad.mit.edu	37	19	58010975	58010975	+	Intron	DEL	T	-	-	rs62126214		2011-2320:2012-354-T	g.chr19:58010975delT	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
ZNF547	284306	broad.mit.edu	37	19	58010978	58010979	+	Intron	DEL	AT	-	-	rs62126215;rs62126216		2011-2320:2012-354-T	g.chr19:58010978_58010979delAT	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
ZNF547	284306	broad.mit.edu	37	19	58010985	58010987	+	Intron	DEL	CCA	-	-	rs146929792	by1000genomes	2011-2320:2012-354-T	g.chr19:58010985_58010987delCCA	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
SNTG2	54221	broad.mit.edu	37	2	1285089	1285090	+	Intron	INS	-	G	G			2011-2320:2012-354-T	g.chr2:1285089_1285090insG	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
RMND5A	64795	broad.mit.edu	37	2	87623326	87623327	+	Intron	INS	-	A	A			2011-2320:2012-354-T	g.chr2:87623326_87623327insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87626314	87626315	+	Intron	INS	-	GTTAG	GTTAG			2011-2320:2012-354-T	g.chr2:87626314_87626315insGTTAG	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87641749	87641750	+	Intron	INS	-	A	A	rs145264498		2011-2320:2012-354-T	g.chr2:87641749_87641750insA	uc002srs.3	+								
RMND5A	64795	broad.mit.edu	37	2	87642995	87642996	+	Intron	INS	-	A	A			2011-2320:2012-354-T	g.chr2:87642995_87642996insA	uc002srs.3	+								
CLASP1	23332	broad.mit.edu	37	2	122368198	122368199	+	Intron	INS	-	GGA	GGA	rs148306674	by1000genomes	2011-2320:2012-354-T	g.chr2:122368198_122368199insGGA	uc002tnc.2	-						CLASP1_uc010yyz.1_Intron|CLASP1_uc010yza.1_Intron|CLASP1_uc010yzb.1_Intron|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Intron	NM_015282	NP_056097
KIF1A	547	broad.mit.edu	37	2	241720894	241720895	+	Intron	INS	-	GCTC	GCTC			2011-2320:2012-354-T	g.chr2:241720894_241720895insGCTC	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
PRIC285	85441	broad.mit.edu	37	20	62191130	62191133	+	Intron	DEL	AGTC	-	-			2011-2320:2012-354-T	g.chr20:62191130_62191133delAGTC	uc002yfm.2	-						PRIC285_uc002yfl.1_Intron	NM_001037335	NP_001032412
RIPK4	54101	broad.mit.edu	37	21	43176837	43176838	+	Frame_Shift_Ins	INS	-	CA	CA			2011-2320:2012-354-T	g.chr21:43176837_43176838insCA	uc002yzn.1	-	2	369_370	c.321_322insTG	c.(319-324)CTGCTGfs	p.L107fs		NM_020639	NP_065690
ADARB1	104	broad.mit.edu	37	21	46529242	46529243	+	Intron	DEL	TA	-	-	rs140518083	by1000genomes	2011-2320:2012-354-T	g.chr21:46529242_46529243delTA	uc002zgy.2	+						ADARB1_uc002zgp.2_Intron|ADARB1_uc002zgr.2_Intron|ADARB1_uc002zgs.2_Intron|ADARB1_uc002zgw.2_Intron|ADARB1_uc002zgv.2_Intron|ADARB1_uc002zgt.2_Intron|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_Intron|ADARB1_uc002zgu.2_Intron	NM_015833	NP_056648
COL18A1	80781	broad.mit.edu	37	21	46904109	46904110	+	Intron	INS	-	CA	CA	rs141493268;rs68118278	by1000genomes	2011-2320:2012-354-T	g.chr21:46904109_46904110insCA	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron	NM_130444	NP_569711
COL18A1	80781	broad.mit.edu	37	21	46920645	46920646	+	Intron	INS	-	GT	GT			2011-2320:2012-354-T	g.chr21:46920645_46920646insGT	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron|SLC19A1_uc010gpy.1_Intron	NM_130444	NP_569711
PCBP3	54039	broad.mit.edu	37	21	47235409	47235410	+	Intron	INS	-	G	G			2011-2320:2012-354-T	g.chr21:47235409_47235410insG	uc010gqb.2	+							NM_020528	NP_065389
PCBP3	54039	broad.mit.edu	37	21	47235412	47235412	+	Intron	DEL	A	-	-			2011-2320:2012-354-T	g.chr21:47235412delA	uc010gqb.2	+							NM_020528	NP_065389
SCUBE1	80274	broad.mit.edu	37	22	43601963	43601964	+	Intron	DEL	CA	-	-	rs145676151		2011-2320:2012-354-T	g.chr22:43601963_43601964delCA	uc003bdt.1	-							NM_173050	NP_766638
PARVB	29780	broad.mit.edu	37	22	44550916	44550917	+	Intron	DEL	GT	-	-	rs909852;rs2401649		2011-2320:2012-354-T	g.chr22:44550916_44550917delGT	uc003ben.2	+						PARVB_uc003bem.2_Intron|PARVB_uc010gzn.2_Intron|PARVB_uc003beo.2_Intron	NM_013327	NP_037459
SLC9A3	6550	broad.mit.edu	37	5	501036	501036	+	Intron	DEL	C	-	-			2011-2320:2012-354-T	g.chr5:501036delC	uc003jbe.2	-						SLC9A3_uc011clx.1_Intron	NM_004174	NP_004165
CEP72	55722	broad.mit.edu	37	5	651259	651260	+	Intron	INS	-	TG	TG	rs72148198		2011-2320:2012-354-T	g.chr5:651259_651260insTG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1070500	1070501	+	Intron	INS	-	A	A			2011-2320:2012-354-T	g.chr5:1070500_1070501insA	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1273198	1273199	+	Intron	DEL	CA	-	-	rs72327925		2011-2320:2012-354-T	g.chr5:1273198_1273199delCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
CAPN11	11131	broad.mit.edu	37	6	44149645	44149646	+	Intron	INS	-	CA	CA			2011-2320:2012-354-T	g.chr6:44149645_44149646insCA	uc003owt.1	+						CAPN11_uc011dvn.1_Intron	NM_007058	NP_008989
SMOC2	64094	broad.mit.edu	37	6	168990399	168990400	+	Intron	INS	-	C	C	rs111728659		2011-2320:2012-354-T	g.chr6:168990399_168990400insC	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
THBS2	7058	broad.mit.edu	37	6	169643206	169643206	+	Intron	DEL	C	-	-			2011-2320:2012-354-T	g.chr6:169643206delC	uc003qwt.2	-							NM_003247	NP_003238
ADAP1	11033	broad.mit.edu	37	7	945857	945858	+	Intron	INS	-	A	A			2011-2320:2012-354-T	g.chr7:945857_945858insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945930	945931	+	Intron	INS	-	A	A			2011-2320:2012-354-T	g.chr7:945930_945931insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946039	946040	+	Intron	INS	-	A	A			2011-2320:2012-354-T	g.chr7:946039_946040insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946163	946164	+	Intron	INS	-	A	A	rs61000036		2011-2320:2012-354-T	g.chr7:946163_946164insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
AUTS2	26053	broad.mit.edu	37	7	69960741	69960741	+	Intron	DEL	A	-	-			2011-2320:2012-354-T	g.chr7:69960741delA	uc003tvw.3	+						AUTS2_uc003tvx.3_Intron	NM_015570	NP_056385
PTPRN2	5799	broad.mit.edu	37	7	157450399	157450400	+	Intron	DEL	AC	-	-			2011-2320:2012-354-T	g.chr7:157450399_157450400delAC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
RALGDS	5900	broad.mit.edu	37	9	135999451	135999452	+	5'Flank	DEL	AC	-	-			2011-2320:2012-354-T	g.chr9:135999451_135999452delAC	uc004cco.2	-						RALGDS_uc004ccp.2_5'Flank|RALGDS_uc004ccq.2_5'Flank|RALGDS_uc004ccr.2_Intron|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Intron|RALGDS_uc011mcw.1_Intron	NM_006266	NP_006257
CNST	163882	broad.mit.edu	37	1	246783773	246783774	+	Intron	INS	-	CT	CT			2011-2321:2012-353-T	g.chr1:246783773_246783774insCT	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
ANXA8	653145	broad.mit.edu	37	10	47023095	47023095	+	Intron	DEL	T	-	-			2011-2321:2012-353-T	g.chr10:47023095delT	uc001jed.3	-								
ADAM12	8038	broad.mit.edu	37	10	127940392	127940392	+	Intron	DEL	G	-	-			2011-2321:2012-353-T	g.chr10:127940392delG	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
LRRC27	80313	broad.mit.edu	37	10	134172604	134172606	+	Intron	DEL	AGT	-	-	rs140240460	by1000genomes	2011-2321:2012-353-T	g.chr10:134172604_134172606delAGT	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
KNDC1	85442	broad.mit.edu	37	10	134997778	134997779	+	Intron	DEL	CA	-	-	rs149543308		2011-2321:2012-353-T	g.chr10:134997778_134997779delCA	uc001llz.1	+						KNDC1_uc001lma.1_Intron	NM_152643	NP_689856
IGSF9B	22997	broad.mit.edu	37	11	133802470	133802471	+	Intron	INS	-	AC	AC			2011-2321:2012-353-T	g.chr11:133802470_133802471insAC	uc001qgx.3	-						IGSF9B_uc001qgy.1_Intron	NM_014987	NP_055802
NCOR2	9612	broad.mit.edu	37	12	124953416	124953421	+	Intron	DEL	CTCATA	-	-	rs36176856		2011-2321:2012-353-T	g.chr12:124953416_124953421delCTCATA	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
COL4A1	1282	broad.mit.edu	37	13	110908133	110908133	+	Intron	DEL	A	-	-			2011-2321:2012-353-T	g.chr13:110908133delA	uc001vqw.3	-						COL4A1_uc010agl.2_Intron	NM_001845	NP_001836
RIN3	79890	broad.mit.edu	37	14	93107024	93107025	+	Intron	DEL	TG	-	-	rs71968959		2011-2321:2012-353-T	g.chr14:93107024_93107025delTG	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
LMF1	64788	broad.mit.edu	37	16	1000238	1000240	+	Intron	DEL	AAT	-	-			2011-2321:2012-353-T	g.chr16:1000238_1000240delAAT	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000437	1000439	+	Intron	DEL	ACA	-	-			2011-2321:2012-353-T	g.chr16:1000437_1000439delACA	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
ABR	29	broad.mit.edu	37	17	1021133	1021134	+	Intron	INS	-	C	C			2011-2321:2012-353-T	g.chr17:1021133_1021134insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
USP32	84669	broad.mit.edu	37	17	58289522	58289522	+	Intron	DEL	T	-	-			2011-2321:2012-353-T	g.chr17:58289522delT	uc002iyo.1	-						USP32_uc002iyn.1_Intron	NM_032582	NP_115971
TBC1D16	125058	broad.mit.edu	37	17	77998110	77998111	+	Intron	DEL	CG	-	-	rs78320392		2011-2321:2012-353-T	g.chr17:77998110_77998111delCG	uc002jxj.2	-							NM_019020	NP_061893
CD70	970	broad.mit.edu	37	19	6587224	6587225	+	Intron	INS	-	GAGA	GAGA	rs142923593	by1000genomes	2011-2321:2012-353-T	g.chr19:6587224_6587225insGAGA	uc002mfi.2	-						CD70_uc010xjf.1_Intron	NM_001252	NP_001243
BCL11A	53335	broad.mit.edu	37	2	60694375	60694376	+	Intron	INS	-	TGG	TGG			2011-2321:2012-353-T	g.chr2:60694375_60694376insTGG	uc002sae.1	-						BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Intron|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044
RMND5A	64795	broad.mit.edu	37	2	87719726	87719726	+	Intron	DEL	C	-	-			2011-2321:2012-353-T	g.chr2:87719726delC	uc002srs.3	+								
XKR7	343702	broad.mit.edu	37	20	30573584	30573585	+	Intron	INS	-	ACAG	ACAG	rs139170949;rs72335429	by1000genomes	2011-2321:2012-353-T	g.chr20:30573584_30573585insACAG	uc002wxe.2	+							NM_001011718	NP_001011718
PHF21B	112885	broad.mit.edu	37	22	45280000	45280008	+	Intron	DEL	CATCATGAT	-	-	rs13055901;rs60606161		2011-2321:2012-353-T	g.chr22:45280000_45280008delCATCATGAT	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
PHF21B	112885	broad.mit.edu	37	22	45280013	45280015	+	Intron	DEL	ATT	-	-	rs143123029;rs13055909		2011-2321:2012-353-T	g.chr22:45280013_45280015delATT	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
ARSA	410	broad.mit.edu	37	22	51067347	51067349	+	5'Flank	DEL	TGT	-	-	rs34043300;rs34618802;rs6151403		2011-2321:2012-353-T	g.chr22:51067347_51067349delTGT	uc003bnb.3	-						ARSA_uc003bna.3_5'Flank|ARSA_uc003bnc.3_5'Flank|ARSA_uc003bnd.3_5'Flank|ARSA_uc003bmz.3_5'Flank|ARSA_uc010hbf.2_5'Flank	NM_001085426	NP_001078895
CNTN4	152330	broad.mit.edu	37	3	2232491	2232492	+	Intron	DEL	CA	-	-			2011-2321:2012-353-T	g.chr3:2232491_2232492delCA	uc003bpc.2	+						CNTN4_uc003bpb.1_Intron	NM_175607	NP_783200
UNC5A	90249	broad.mit.edu	37	5	176299993	176299993	+	Intron	DEL	G	-	-	rs56370365		2011-2321:2012-353-T	g.chr5:176299993delG	uc003mey.2	+						UNC5A_uc010jkg.1_Intron	NM_133369	NP_588610
TCP10	6953	broad.mit.edu	37	6	167800592	167800593	+	5'Flank	INS	-	GA	GA			2011-2321:2012-353-T	g.chr6:167800592_167800593insGA	uc003qvv.1	-						TCP10_uc003qvu.2_5'Flank|TCP10_uc003qvw.2_5'Flank	NM_004610	NP_004601
SMOC2	64094	broad.mit.edu	37	6	169015708	169015709	+	Intron	INS	-	GG	GG			2011-2321:2012-353-T	g.chr6:169015708_169015709insGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169016341	169016342	+	Intron	DEL	GG	-	-			2011-2321:2012-353-T	g.chr6:169016341_169016342delGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
TRAPPC9	83696	broad.mit.edu	37	8	141167225	141167225	+	Intron	DEL	T	-	-	rs66795566		2011-2321:2012-353-T	g.chr8:141167225delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
HEATR7A	727957	broad.mit.edu	37	8	145288395	145288395	+	Intron	DEL	C	-	-			2011-2321:2012-353-T	g.chr8:145288395delC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
CRLF2	64109	broad.mit.edu	37	X	1316365	1316368	+	Intron	DEL	CCAG	-	-			2011-2321:2012-353-T	g.chrX:1316365_1316368delCCAG	uc004cpm.1	-								
PRDM16	63976	broad.mit.edu	37	1	3030782	3030783	+	Intron	DEL	AA	-	-	rs143413205	by1000genomes	2011-2322:2012-352-T	g.chr1:3030782_3030783delAA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
MLLT10	8028	broad.mit.edu	37	10	21903924	21903924	+	Intron	DEL	A	-	-			2011-2322:2012-352-T	g.chr10:21903924delA	uc001iqs.2	+						MLLT10_uc001iqt.2_Intron|MLLT10_uc001iqv.2_Intron|MLLT10_uc001iqy.2_Intron|MLLT10_uc001ira.2_5'Flank|MLLT10_uc001iqz.2_Intron	NM_004641	NP_004632
ANXA8	653145	broad.mit.edu	37	10	47059494	47059495	+	Intron	INS	-	AAT	AAT			2011-2322:2012-352-T	g.chr10:47059494_47059495insAAT	uc001jed.3	-								
ANXA8	653145	broad.mit.edu	37	10	47059504	47059505	+	Intron	DEL	CC	-	-			2011-2322:2012-352-T	g.chr10:47059504_47059505delCC	uc001jed.3	-								
ANXA8	653145	broad.mit.edu	37	10	47059512	47059513	+	Intron	DEL	AT	-	-			2011-2322:2012-352-T	g.chr10:47059512_47059513delAT	uc001jed.3	-								
ANXA8	653145	broad.mit.edu	37	10	47059519	47059520	+	Intron	DEL	TC	-	-			2011-2322:2012-352-T	g.chr10:47059519_47059520delTC	uc001jed.3	-								
ANXA8	653145	broad.mit.edu	37	10	47059523	47059523	+	Intron	DEL	C	-	-			2011-2322:2012-352-T	g.chr10:47059523delC	uc001jed.3	-								
TCERG1L	256536	broad.mit.edu	37	10	132893515	132893516	+	Intron	INS	-	C	C			2011-2322:2012-352-T	g.chr10:132893515_132893516insC	uc001lkp.2	-							NM_174937	NP_777597
MUC5B	727897	broad.mit.edu	37	11	1212782	1212783	+	Intron	INS	-	G	G			2011-2322:2012-352-T	g.chr11:1212782_1212783insG	uc009ycr.1	+						uc001lsz.2_5'Flank	NM_017511	NP_059981
B4GALNT3	283358	broad.mit.edu	37	12	620636	620638	+	Intron	DEL	CTT	-	-			2011-2322:2012-352-T	g.chr12:620636_620638delCTT	uc001qii.1	+							NM_173593	NP_775864
MLL2	8085	broad.mit.edu	37	12	49431031	49431031	+	Frame_Shift_Del	DEL	G	-	-			2011-2322:2012-352-T	g.chr12:49431031delG	uc001rta.3	-	34	10108	c.10108delC	c.(10108-10110)CAGfs	p.Q3370fs		NM_003482	NP_003473
ANKLE2	23141	broad.mit.edu	37	12	133323904	133323905	+	Intron	DEL	CT	-	-			2011-2322:2012-352-T	g.chr12:133323904_133323905delCT	uc001ukx.2	-						ANKLE2_uc001uky.3_Intron	NM_015114	NP_055929
DCLK1	9201	broad.mit.edu	37	13	36532432	36532443	+	Intron	DEL	CACTATAATAAA	-	-			2011-2322:2012-352-T	g.chr13:36532432_36532443delCACTATAATAAA	uc001uvf.2	-							NM_004734	NP_004725
SYNE2	23224	broad.mit.edu	37	14	64490259	64490259	+	Intron	DEL	T	-	-			2011-2322:2012-352-T	g.chr14:64490259delT	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
DICER1	23405	broad.mit.edu	37	14	95557509	95557509	+	Intron	DEL	T	-	-			2011-2322:2012-352-T	g.chr14:95557509delT	uc001ydw.2	-						DICER1_uc010avh.1_Intron|DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron	NM_030621	NP_085124
DICER1	23405	broad.mit.edu	37	14	95581843	95581844	+	Intron	INS	-	A	A			2011-2322:2012-352-T	g.chr14:95581843_95581844insA	uc001ydw.2	-						DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron	NM_030621	NP_085124
TRAF3	7187	broad.mit.edu	37	14	103363626	103363626	+	Frame_Shift_Del	DEL	A	-	-			2011-2322:2012-352-T	g.chr14:103363626delA	uc001ymc.1	+	10	1201	c.848delA	c.(847-849)GAAfs	p.E283fs	TRAF3_uc001yme.1_Frame_Shift_Del_p.E258fs|TRAF3_uc001ymd.1_Frame_Shift_Del_p.E283fs|TRAF3_uc010txy.1_Frame_Shift_Del_p.E200fs	NM_145725	NP_663777
RPH3AL	9501	broad.mit.edu	37	17	65977	65977	+	Intron	DEL	G	-	-			2011-2322:2012-352-T	g.chr17:65977delG	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
FBLN7	129804	broad.mit.edu	37	2	112918243	112918244	+	Intron	INS	-	GACG	GACG	rs62158704	by1000genomes	2011-2322:2012-352-T	g.chr2:112918243_112918244insGACG	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
LRP1B	53353	broad.mit.edu	37	2	141609527	141609528	+	Intron	INS	-	A	A	rs145316236	by1000genomes	2011-2322:2012-352-T	g.chr2:141609527_141609528insA	uc002tvj.1	-						LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027
CUL3	8452	broad.mit.edu	37	2	225422274	225422274	+	Intron	DEL	C	-	-			2011-2322:2012-352-T	g.chr2:225422274delC	uc002vny.2	-						CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Intron	NM_003590	NP_003581
EP300	2033	broad.mit.edu	37	22	41489174	41489174	+	Intron	DEL	T	-	-			2011-2322:2012-352-T	g.chr22:41489174delT	uc003azl.3	+							NM_001429	NP_001420
SH3BP5	9467	broad.mit.edu	37	3	15314138	15314139	+	Intron	DEL	AT	-	-	rs66812059;rs56834490		2011-2322:2012-352-T	g.chr3:15314138_15314139delAT	uc003bzp.1	-						SH3BP5_uc010hem.1_Intron|SH3BP5_uc003bzq.1_Intron|SH3BP5_uc003bzr.1_Intron	NM_004844	NP_004835
HHATL	57467	broad.mit.edu	37	3	42741656	42741657	+	Intron	INS	-	TG	TG	rs138895327;rs10576105	by1000genomes	2011-2322:2012-352-T	g.chr3:42741656_42741657insTG	uc003clw.2	-						HHATL_uc003clx.2_Intron	NM_020707	NP_065758
PIK3CB	5291	broad.mit.edu	37	3	138474573	138474573	+	Intron	DEL	T	-	-			2011-2322:2012-352-T	g.chr3:138474573delT	uc011bmq.1	-							NM_006219	NP_006210
CPN2	1370	broad.mit.edu	37	3	194073590	194073591	+	5'Flank	DEL	TA	-	-	rs71637131		2011-2322:2012-352-T	g.chr3:194073590_194073591delTA	uc003fts.2	-							NM_001080513	NP_001073982
FAT1	2195	broad.mit.edu	37	4	187560861	187560861	+	Intron	DEL	A	-	-			2011-2322:2012-352-T	g.chr4:187560861delA	uc003izf.2	-							NM_005245	NP_005236
PIK3R1	5295	broad.mit.edu	37	5	67588001	67588001	+	Intron	DEL	T	-	-			2011-2322:2012-352-T	g.chr5:67588001delT	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron|PIK3R1_uc003jvc.2_Intron|PIK3R1_uc003jvd.2_Intron|PIK3R1_uc003jve.2_5'UTR|PIK3R1_uc011crb.1_5'Flank	NM_181523	NP_852664
ROS1	6098	broad.mit.edu	37	6	117687244	117687245	+	Frame_Shift_Ins	INS	-	G	G			2011-2322:2012-352-T	g.chr6:117687244_117687245insG	uc003pxp.1	-	18	3005_3006	c.2806_2807insC	c.(2806-2808)CTGfs	p.L936fs	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
AOAH	313	broad.mit.edu	37	7	36555646	36555647	+	Intron	DEL	CA	-	-			2011-2322:2012-352-T	g.chr7:36555646_36555647delCA	uc003tfh.3	-						AOAH_uc010kxf.2_Intron|AOAH_uc011kba.1_Intron	NM_001637	NP_001628
EGFR	1956	broad.mit.edu	37	7	55235051	55235059	+	Intron	DEL	TGGTGTTGA	-	-	rs111361325;rs138291012	by1000genomes	2011-2322:2012-352-T	g.chr7:55235051_55235059delTGGTGTTGA	uc003tqk.2	+						EGFR_uc003tqi.2_Intron|EGFR_uc003tqj.2_Intron|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Intron|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
BRAF	673	broad.mit.edu	37	7	140508254	140508254	+	Intron	DEL	T	-	-			2011-2322:2012-352-T	g.chr7:140508254delT	uc003vwc.3	-							NM_004333	NP_004324
MLL3	58508	broad.mit.edu	37	7	152055766	152055767	+	Intron	INS	-	A	A			2011-2322:2012-352-T	g.chr7:152055766_152055767insA	uc003wla.2	-							NM_170606	NP_733751
NCAPG2	54892	broad.mit.edu	37	7	158441189	158441189	+	Intron	DEL	A	-	-			2011-2322:2012-352-T	g.chr7:158441189delA	uc003wnv.1	-						NCAPG2_uc010lqu.1_Intron|NCAPG2_uc003wnw.1_Intron|NCAPG2_uc003wnx.1_Intron|NCAPG2_uc011kwe.1_Intron|NCAPG2_uc011kwc.1_Intron|NCAPG2_uc011kwd.1_Intron	NM_017760	NP_060230
UBR5	51366	broad.mit.edu	37	8	103289348	103289349	+	Frame_Shift_Ins	INS	-	T	T			2011-2322:2012-352-T	g.chr8:103289348_103289349insT	uc003ykr.1	-	45	6393_6394	c.6360_6361insA	c.(6358-6363)AAAGAAfs	p.K2120fs	UBR5_uc003yks.1_Frame_Shift_Ins_p.K2120fs	NM_015902	NP_056986
CSMD3	114788	broad.mit.edu	37	8	113301796	113301796	+	Intron	DEL	T	-	-			2011-2322:2012-352-T	g.chr8:113301796delT	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
TOP1MT	116447	broad.mit.edu	37	8	144404122	144404123	+	Intron	INS	-	AT	AT			2011-2322:2012-352-T	g.chr8:144404122_144404123insAT	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144404863	144404864	+	Intron	INS	-	CA	CA			2011-2322:2012-352-T	g.chr8:144404863_144404864insCA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
HEATR7A	727957	broad.mit.edu	37	8	145288285	145288286	+	Intron	INS	-	C	C			2011-2322:2012-352-T	g.chr8:145288285_145288286insC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
ARHGAP39	80728	broad.mit.edu	37	8	145913001	145913002	+	5'Flank	INS	-	C	C			2011-2322:2012-352-T	g.chr8:145913001_145913002insC	uc011llk.1	-							NM_025251	NP_079527
MAN1B1	11253	broad.mit.edu	37	9	139997213	139997214	+	Intron	INS	-	TG	TG	rs66976915;rs66760625		2011-2322:2012-352-T	g.chr9:139997213_139997214insTG	uc004cld.2	+						MAN1B1_uc011meo.1_Intron|MAN1B1_uc011mep.1_Intron|MAN1B1_uc010ncc.2_Intron|MAN1B1_uc004clf.1_5'Flank|MAN1B1_uc004clg.1_5'Flank	NM_016219	NP_057303
EXD3	54932	broad.mit.edu	37	9	140223123	140223124	+	Intron	INS	-	G	G			2011-2322:2012-352-T	g.chr9:140223123_140223124insG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
PNPLA7	375775	broad.mit.edu	37	9	140412600	140412603	+	Intron	DEL	CCCA	-	-			2011-2322:2012-352-T	g.chr9:140412600_140412603delCCCA	uc004cnf.2	-						PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Intron	NM_152286	NP_689499
PPP2R3B	28227	broad.mit.edu	37	X	314720	314721	+	Intron	INS	-	G	G			2011-2322:2012-352-T	g.chrX:314720_314721insG	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
SHOX	6473	broad.mit.edu	37	X	583912	583912	+	5'Flank	DEL	A	-	-			2011-2322:2012-352-T	g.chrX:583912delA	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
HEPH	9843	broad.mit.edu	37	X	65483468	65483468	+	Intron	DEL	T	-	-			2011-2322:2012-352-T	g.chrX:65483468delT	uc011moz.1	+						HEPH_uc004dwn.2_Intron|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Intron	NM_138737	NP_620074
COL17A1	1308	broad.mit.edu	37	10	105795669	105795670	+	Intron	INS	-	GT	GT	rs143118475		2011-2323:2012-311-T	g.chr10:105795669_105795670insGT	uc001kxr.2	-							NM_000494	NP_000485
UBE4A	9354	broad.mit.edu	37	11	118243701	118243701	+	Intron	DEL	A	-	-	rs34104337		2011-2323:2012-311-T	g.chr11:118243701delA	uc001psw.2	+						UBE4A_uc001psv.2_Intron	NM_004788	NP_004779
COG3	83548	broad.mit.edu	37	13	46060468	46060468	+	Intron	DEL	G	-	-			2011-2323:2012-311-T	g.chr13:46060468delG	uc001vak.2	+						COG3_uc010tfu.1_Intron|COG3_uc001vai.2_Intron|COG3_uc001vaj.1_Intron|COG3_uc010tfv.1_Intron|COG3_uc010aci.2_Intron	NM_031431	NP_113619
ZFYVE26	23503	broad.mit.edu	37	14	68286245	68286245	+	5'Flank	DEL	A	-	-	rs76157167		2011-2323:2012-311-T	g.chr14:68286245delA	uc001xka.2	-						RAD51L1_uc010aqq.2_5'Flank|RAD51L1_uc001xkd.2_5'Flank|RAD51L1_uc010aqr.2_5'Flank|RAD51L1_uc001xke.2_5'Flank|RAD51L1_uc001xkf.1_5'Flank|RAD51L1_uc010aqs.1_5'Flank|RAD51L1_uc001xkg.1_5'Flank|ZFYVE26_uc010tsz.1_5'Flank|ZFYVE26_uc001xkc.3_5'Flank|ZFYVE26_uc010tta.1_5'Flank	NM_015346	NP_056161
CCDC135	84229	broad.mit.edu	37	16	57739652	57739653	+	Intron	INS	-	T	T			2011-2323:2012-311-T	g.chr16:57739652_57739653insT	uc002emi.2	+						CCDC135_uc002emj.2_Intron|CCDC135_uc002emk.2_Intron	NM_032269	NP_115645
CCDC135	84229	broad.mit.edu	37	16	57739653	57739654	+	Intron	INS	-	CAT	CAT			2011-2323:2012-311-T	g.chr16:57739653_57739654insCAT	uc002emi.2	+						CCDC135_uc002emj.2_Intron|CCDC135_uc002emk.2_Intron	NM_032269	NP_115645
IL34	146433	broad.mit.edu	37	16	70678855	70678856	+	5'Flank	DEL	AG	-	-			2011-2323:2012-311-T	g.chr16:70678855_70678856delAG	uc002ezh.1	+						IL34_uc002ezi.1_5'Flank	NM_152456	NP_689669
NF1	4763	broad.mit.edu	37	17	29528326	29528326	+	Intron	DEL	T	-	-			2011-2323:2012-311-T	g.chr17:29528326delT	uc002hgg.2	+						NF1_uc002hge.1_Intron|NF1_uc002hgf.1_Intron|NF1_uc002hgh.2_Intron|NF1_uc010csn.1_Intron	NM_001042492	NP_001035957
TYMS	7298	broad.mit.edu	37	18	667557	667558	+	Intron	INS	-	A	A			2011-2323:2012-311-T	g.chr18:667557_667558insA	uc010dka.1	+						TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062
KCTD1	284252	broad.mit.edu	37	18	24173355	24173357	+	Intron	DEL	GAG	-	-			2011-2323:2012-311-T	g.chr18:24173355_24173357delGAG	uc010xbk.1	-							NM_198991	NP_945342
KCTD1	284252	broad.mit.edu	37	18	24173370	24173372	+	Intron	DEL	GAG	-	-			2011-2323:2012-311-T	g.chr18:24173370_24173372delGAG	uc010xbk.1	-							NM_198991	NP_945342
MIER2	54531	broad.mit.edu	37	19	309930	309930	+	Intron	DEL	A	-	-			2011-2323:2012-311-T	g.chr19:309930delA	uc002lok.1	-							NM_017550	NP_060020
ZNF578	147660	broad.mit.edu	37	19	52976924	52976925	+	Intron	DEL	TC	-	-	rs114200539	by1000genomes	2011-2323:2012-311-T	g.chr19:52976924_52976925delTC	uc002pzp.3	+							NM_001099694	NP_001093164
C20orf26	26074	broad.mit.edu	37	20	20336630	20336631	+	Intron	INS	-	GTG	GTG	rs137937135;rs71918872	by1000genomes	2011-2323:2012-311-T	g.chr20:20336630_20336631insGTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
CDH4	1002	broad.mit.edu	37	20	59951104	59951105	+	Intron	INS	-	TGG	TGG			2011-2323:2012-311-T	g.chr20:59951104_59951105insTGG	uc002ybn.1	+							NM_001794	NP_001785
COL6A1	1291	broad.mit.edu	37	21	47408313	47408314	+	Intron	INS	-	A	A			2011-2323:2012-311-T	g.chr21:47408313_47408314insA	uc002zhu.1	+							NM_001848	NP_001839
PLEKHG4B	153478	broad.mit.edu	37	5	165592	165593	+	Intron	INS	-	T	T			2011-2323:2012-311-T	g.chr5:165592_165593insT	uc003jak.2	+							NM_052909	NP_443141
AHRR	57491	broad.mit.edu	37	5	344887	344890	+	Intron	DEL	TGAC	-	-			2011-2323:2012-311-T	g.chr5:344887_344890delTGAC	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
MAD1L1	8379	broad.mit.edu	37	7	2097658	2097662	+	Intron	DEL	AGAGG	-	-	rs72424682;rs71928108		2011-2323:2012-311-T	g.chr7:2097658_2097662delAGAGG	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
CALN1	83698	broad.mit.edu	37	7	71674295	71674296	+	Intron	INS	-	TCTT	TCTT	rs143091829	by1000genomes	2011-2323:2012-311-T	g.chr7:71674295_71674296insTCTT	uc003twa.3	-						CALN1_uc003twb.3_Intron|CALN1_uc003twc.3_Intron	NM_001017440	NP_001017440
VIPR2	7434	broad.mit.edu	37	7	158834246	158834247	+	Intron	INS	-	T	T	rs139961577;rs67819019	by1000genomes	2011-2323:2012-311-T	g.chr7:158834246_158834247insT	uc003woh.2	-						VIPR2_uc010lqx.2_Intron|VIPR2_uc010lqy.2_Intron	NM_003382	NP_003373
AGRN	375790	broad.mit.edu	37	1	965799	965800	+	Intron	DEL	GT	-	-			2011-2324:2012-339-T	g.chr1:965799_965800delGT	uc001ack.1	+							NM_198576	NP_940978
BIRC3	330	broad.mit.edu	37	11	102187577	102187578	+	5'Flank	INS	-	A	A			2011-2324:2012-339-T	g.chr11:102187577_102187578insA	uc001pgx.2	+							NM_182962	NP_892007
ST8SIA1	6489	broad.mit.edu	37	12	22473948	22473949	+	Intron	INS	-	A	A			2011-2324:2012-339-T	g.chr12:22473948_22473949insA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
ATP11A	23250	broad.mit.edu	37	13	113482482	113482483	+	Intron	INS	-	A	A	rs142146760		2011-2324:2012-339-T	g.chr13:113482482_113482483insA	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc001vsm.1_Intron	NM_015205	NP_056020
GRK1	6011	broad.mit.edu	37	13	114436867	114436872	+	Intron	DEL	TGTGTA	-	-			2011-2324:2012-339-T	g.chr13:114436867_114436872delTGTGTA	uc010tkf.1	+							NM_002929	NP_002920
RASA3	22821	broad.mit.edu	37	13	114771293	114771294	+	Intron	INS	-	CG	CG			2011-2324:2012-339-T	g.chr13:114771293_114771294insCG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
TRIP11	9321	broad.mit.edu	37	14	92478356	92478357	+	Intron	DEL	TA	-	-	rs71970501;rs58527736		2011-2324:2012-339-T	g.chr14:92478356_92478357delTA	uc001xzy.2	-						TRIP11_uc010auf.1_Intron	NM_004239	NP_004230
C16orf45	89927	broad.mit.edu	37	16	15611713	15611714	+	Intron	INS	-	GTGG	GTGG			2011-2324:2012-339-T	g.chr16:15611713_15611714insGTGG	uc002ddo.2	+						C16orf45_uc002ddp.2_Intron	NM_033201	NP_149978
DPEP1	1800	broad.mit.edu	37	16	89701347	89701347	+	Intron	DEL	T	-	-			2011-2324:2012-339-T	g.chr16:89701347delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
RPH3AL	9501	broad.mit.edu	37	17	138495	138496	+	Intron	DEL	CT	-	-			2011-2324:2012-339-T	g.chr17:138495_138496delCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
BAHCC1	57597	broad.mit.edu	37	17	79399291	79399291	+	Intron	DEL	T	-	-			2011-2324:2012-339-T	g.chr17:79399291delT	uc002kaf.2	+							NM_001080519	NP_001073988
SIPA1L3	23094	broad.mit.edu	37	19	38660620	38660621	+	Intron	INS	-	G	G			2011-2324:2012-339-T	g.chr19:38660620_38660621insG	uc002ohk.2	+							NM_015073	NP_055888
ALDH16A1	126133	broad.mit.edu	37	19	49964548	49964548	+	Intron	DEL	A	-	-			2011-2324:2012-339-T	g.chr19:49964548delA	uc002pnt.2	+						ALDH16A1_uc010yar.1_Intron|ALDH16A1_uc010yas.1_Intron|ALDH16A1_uc010yat.1_Intron	NM_153329	NP_699160
RAB3GAP1	22930	broad.mit.edu	37	2	135875102	135875104	+	Intron	DEL	CTT	-	-			2011-2324:2012-339-T	g.chr2:135875102_135875104delCTT	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
DONSON	29980	broad.mit.edu	37	21	35267946	35267947	+	Intron	INS	-	GT	GT	rs146422087;rs138677745	by1000genomes	2011-2324:2012-339-T	g.chr21:35267946_35267947insGT	uc002ysn.1	-								
PDE9A	5152	broad.mit.edu	37	21	44189613	44189614	+	Intron	INS	-	CA	CA	rs13050980		2011-2324:2012-339-T	g.chr21:44189613_44189614insCA	uc002zbm.2	+						PDE9A_uc002zbn.2_Intron|PDE9A_uc002zbo.2_Intron|PDE9A_uc002zbp.2_Intron|PDE9A_uc002zbq.2_Intron|PDE9A_uc002zbs.2_Intron|PDE9A_uc002zbr.2_Intron|PDE9A_uc002zbt.2_Intron|PDE9A_uc002zbu.2_Intron|PDE9A_uc002zbv.2_Intron|PDE9A_uc002zbw.2_Intron|PDE9A_uc002zbx.2_Intron|PDE9A_uc002zby.2_Intron|PDE9A_uc002zbz.2_Intron|PDE9A_uc002zca.2_Intron|PDE9A_uc002zcb.2_Intron|PDE9A_uc002zcc.2_Intron|PDE9A_uc002zcd.2_Intron|PDE9A_uc002zce.2_Intron|PDE9A_uc002zcf.2_Intron|PDE9A_uc002zcg.2_Intron|PDE9A_uc002zch.2_Intron	NM_002606	NP_002597
TOM1	10043	broad.mit.edu	37	22	35739336	35739337	+	Intron	INS	-	CA	CA	rs144221305		2011-2324:2012-339-T	g.chr22:35739336_35739337insCA	uc003ann.2	+						TOM1_uc011ami.1_Intron|TOM1_uc011amj.1_Intron|TOM1_uc003ans.2_Intron|TOM1_uc011amk.1_Intron|TOM1_uc003anp.2_Intron|TOM1_uc011aml.1_Intron|TOM1_uc003ano.2_Intron|TOM1_uc003anq.2_Intron|TOM1_uc003anr.2_Intron	NM_005488	NP_005479
SLC2A2	6514	broad.mit.edu	37	3	170746832	170746833	+	5'Flank	INS	-	T	T			2011-2324:2012-339-T	g.chr3:170746832_170746833insT	uc003fhe.1	-						SLC2A2_uc003fhf.1_5'Flank|SLC2A2_uc011bpu.1_5'Flank	NM_000340	NP_000331
SLC12A7	10723	broad.mit.edu	37	5	1072483	1072483	+	Intron	DEL	C	-	-			2011-2324:2012-339-T	g.chr5:1072483delC	uc003jbu.2	-							NM_006598	NP_006589
STK32A	202374	broad.mit.edu	37	5	146639651	146639654	+	Intron	DEL	TCTG	-	-	rs139741759		2011-2324:2012-339-T	g.chr5:146639651_146639654delTCTG	uc010jgn.1	+						STK32A_uc003lol.3_Intron|STK32A_uc003lom.2_Intron|STK32A_uc011dbw.1_Intron	NM_001112724	NP_001106195
CDHR2	54825	broad.mit.edu	37	5	176019140	176019145	+	Intron	DEL	TGATGG	-	-			2011-2324:2012-339-T	g.chr5:176019140_176019145delTGATGG	uc003mem.1	+						CDHR2_uc003men.1_Intron	NM_017675	NP_060145
GCNT2	2651	broad.mit.edu	37	6	10589555	10589556	+	Intron	INS	-	GT	GT			2011-2324:2012-339-T	g.chr6:10589555_10589556insGT	uc010joo.2	+						GCNT2_uc010jol.2_Intron|GCNT2_uc010jom.2_Intron|GCNT2_uc010jop.2_Intron|GCNT2_uc003mza.2_Intron|GCNT2_uc003mzc.3_Intron|GCNT2_uc003mzd.2_Intron|GCNT2_uc003mze.2_Intron	NM_145649	NP_663624
SYNE1	23345	broad.mit.edu	37	6	152680764	152680765	+	Intron	INS	-	GTGTGT	GTGTGT	rs145785055	by1000genomes	2011-2324:2012-339-T	g.chr6:152680764_152680765insGTGTGT	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
ADAP1	11033	broad.mit.edu	37	7	945373	945374	+	Intron	INS	-	A	A			2011-2324:2012-339-T	g.chr7:945373_945374insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945841	945842	+	Intron	INS	-	G	G			2011-2324:2012-339-T	g.chr7:945841_945842insG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945930	945931	+	Intron	INS	-	A	A			2011-2324:2012-339-T	g.chr7:945930_945931insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ETV1	2115	broad.mit.edu	37	7	14029148	14029150	+	Intron	DEL	ATT	-	-			2011-2324:2012-339-T	g.chr7:14029148_14029150delATT	uc011jxq.1	-						ETV1_uc003ssw.3_Intron|ETV1_uc003ssx.2_Intron|ETV1_uc011jxr.1_Intron|ETV1_uc011jxs.1_Intron	NM_004956	NP_004947
PTPRN2	5799	broad.mit.edu	37	7	157569221	157569222	+	Intron	INS	-	C	C			2011-2324:2012-339-T	g.chr7:157569221_157569222insC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ERICH1	157697	broad.mit.edu	37	8	626446	626446	+	Intron	DEL	G	-	-			2011-2324:2012-339-T	g.chr8:626446delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
ARHGAP39	80728	broad.mit.edu	37	8	145913037	145913037	+	5'Flank	DEL	C	-	-			2011-2324:2012-339-T	g.chr8:145913037delC	uc011llk.1	-							NM_025251	NP_079527
GOLM1	51280	broad.mit.edu	37	9	88668252	88668256	+	Intron	DEL	CCACG	-	-	rs139413631;rs117546243	by1000genomes;byFrequency;by1000genomes	2011-2324:2012-339-T	g.chr9:88668252_88668256delCCACG	uc004aol.2	-						GOLM1_uc010mqd.1_Intron|GOLM1_uc004aom.2_Intron	NM_016548	NP_057632
ROR2	4920	broad.mit.edu	37	9	94457775	94457776	+	Intron	DEL	GT	-	-			2011-2324:2012-339-T	g.chr9:94457775_94457776delGT	uc004ari.1	-							NM_004560	NP_004551
FAM125B	89853	broad.mit.edu	37	9	129247879	129247880	+	Intron	INS	-	C	C			2011-2324:2012-339-T	g.chr9:129247879_129247880insC	uc004bqh.1	+						FAM125B_uc011lzy.1_Intron|FAM125B_uc010mxd.2_Intron	NM_033446	NP_258257
TTF1	7270	broad.mit.edu	37	9	135252915	135252916	+	Intron	INS	-	GGTG	GGTG			2011-2324:2012-339-T	g.chr9:135252915_135252916insGGTG	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
PNPLA7	375775	broad.mit.edu	37	9	140398465	140398467	+	Intron	DEL	GAA	-	-			2011-2324:2012-339-T	g.chr9:140398465_140398467delGAA	uc004cnf.2	-						C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Intron	NM_152286	NP_689499
DDX3Y	8653	broad.mit.edu	37	Y	15028567	15028567	+	Intron	DEL	T	-	-			2011-2324:2012-339-T	g.chrY:15028567delT	uc004fsu.1	+						DDX3Y_uc004fsv.2_Intron|DDX3Y_uc010nww.1_Intron|DDX3Y_uc011nar.1_Intron	NM_001122665	NP_001116137
GLIS1	148979	broad.mit.edu	37	1	54098761	54098764	+	Intron	DEL	TGAG	-	-	rs34421203		2011-2325:2012-337-T	g.chr1:54098761_54098764delTGAG	uc001cvr.1	-							NM_147193	NP_671726
NOTCH2	4853	broad.mit.edu	37	1	120508171	120508171	+	Frame_Shift_Del	DEL	C	-	-			2011-2325:2012-337-T	g.chr1:120508171delC	uc001eik.2	-	10	1842	c.1586delG	c.(1585-1587)TGCfs	p.C529fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.C529fs|NOTCH2_uc001eim.3_Frame_Shift_Del_p.C446fs	NM_024408	NP_077719
KCNN3	3782	broad.mit.edu	37	1	154686801	154686801	+	Intron	DEL	T	-	-			2011-2325:2012-337-T	g.chr1:154686801delT	uc001ffp.2	-						KCNN3_uc001ffo.2_Intron	NM_002249	NP_002240
KCNN3	3782	broad.mit.edu	37	1	154686812	154686813	+	Intron	INS	-	GTG	GTG			2011-2325:2012-337-T	g.chr1:154686812_154686813insGTG	uc001ffp.2	-						KCNN3_uc001ffo.2_Intron	NM_002249	NP_002240
LGR6	59352	broad.mit.edu	37	1	202174046	202174047	+	Intron	INS	-	C	C			2011-2325:2012-337-T	g.chr1:202174046_202174047insC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
HHAT	55733	broad.mit.edu	37	1	210639451	210639452	+	Intron	INS	-	GAAT	GAAT	rs71684699		2011-2325:2012-337-T	g.chr1:210639451_210639452insGAAT	uc009xcx.2	+						HHAT_uc010psq.1_Intron|HHAT_uc001hhz.3_Intron|HHAT_uc010psr.1_Intron|HHAT_uc010pss.1_Intron|HHAT_uc009xcy.2_Intron|HHAT_uc010pst.1_Intron|HHAT_uc010psu.1_Intron|HHAT_uc001hia.3_Intron	NM_001122834	NP_001116306
TRIM67	440730	broad.mit.edu	37	1	231337769	231337771	+	Intron	DEL	GCA	-	-			2011-2325:2012-337-T	g.chr1:231337769_231337771delGCA	uc009xfn.1	+							NM_001004342	NP_001004342
GRK5	2869	broad.mit.edu	37	10	121051474	121051475	+	Intron	INS	-	TTT	TTT			2011-2325:2012-337-T	g.chr10:121051474_121051475insTTT	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
GPR123	84435	broad.mit.edu	37	10	134883035	134883036	+	5'Flank	DEL	GC	-	-	rs71828211		2011-2325:2012-337-T	g.chr10:134883035_134883036delGC	uc001llw.2	+								
GPR123	84435	broad.mit.edu	37	10	134883050	134883051	+	5'Flank	INS	-	T	T			2011-2325:2012-337-T	g.chr10:134883050_134883051insT	uc001llw.2	+								
GPR123	84435	broad.mit.edu	37	10	134883058	134883059	+	5'Flank	INS	-	T	T			2011-2325:2012-337-T	g.chr10:134883058_134883059insT	uc001llw.2	+								
KIRREL3	84623	broad.mit.edu	37	11	126793072	126793073	+	Intron	INS	-	T	T	rs111403519		2011-2325:2012-337-T	g.chr11:126793072_126793073insT	uc001qea.2	-						KIRREL3_uc001qeb.2_Intron|KIRREL3_uc001qec.1_Intron|KIRREL3_uc001qed.3_Intron	NM_032531	NP_115920
IL17D	53342	broad.mit.edu	37	13	21292828	21292829	+	Intron	INS	-	ACAC	ACAC	rs138583770		2011-2325:2012-337-T	g.chr13:21292828_21292829insACAC	uc001unm.2	+							NM_138284	NP_612141
IL17D	53342	broad.mit.edu	37	13	21292878	21292881	+	Intron	DEL	CACA	-	-			2011-2325:2012-337-T	g.chr13:21292878_21292881delCACA	uc001unm.2	+							NM_138284	NP_612141
PPP4R4	57718	broad.mit.edu	37	14	94684803	94684804	+	Intron	DEL	CG	-	-			2011-2325:2012-337-T	g.chr14:94684803_94684804delCG	uc001ycs.1	+						PPP4R4_uc001ycr.2_Intron	NM_058237	NP_478144
INF2	64423	broad.mit.edu	37	14	105326724	105326734	+	Intron	DEL	TCCACCCTCCA	-	-			2011-2325:2012-337-T	g.chr14:105326724_105326734delTCCACCCTCCA	uc010tyi.1	+							NM_022489	NP_071934
DPEP1	1800	broad.mit.edu	37	16	89701220	89701221	+	Intron	INS	-	T	T			2011-2325:2012-337-T	g.chr16:89701220_89701221insT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
PPP1R12C	54776	broad.mit.edu	37	19	55608339	55608340	+	Intron	DEL	CG	-	-	rs66713018		2011-2325:2012-337-T	g.chr19:55608339_55608340delCG	uc002qix.2	-						PPP1R12C_uc010yfs.1_Intron|PPP1R12C_uc002qiy.2_Intron	NM_017607	NP_060077
PXDN	7837	broad.mit.edu	37	2	1724474	1724475	+	Intron	DEL	TC	-	-			2011-2325:2012-337-T	g.chr2:1724474_1724475delTC	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
EFCAB6	64800	broad.mit.edu	37	22	44079631	44079642	+	In_Frame_Del	DEL	TTGATTATCAGT	-	-			2011-2325:2012-337-T	g.chr22:44079631_44079642delTTGATTATCAGT	uc003bdy.1	-	12	1451_1462	c.1236_1247delACTGATAATCAA	c.(1234-1248)TTACTGATAATCAAC>TTC	p.412_416LLIIN>F	EFCAB6_uc003bdz.1_In_Frame_Del_p.260_264LLIIN>F|EFCAB6_uc010gzi.1_In_Frame_Del_p.260_264LLIIN>F|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_In_Frame_Del_p.409_413LLIIN>F	NM_022785	NP_073622
PARVB	29780	broad.mit.edu	37	22	44550543	44550549	+	Intron	DEL	TGTGTGG	-	-			2011-2325:2012-337-T	g.chr22:44550543_44550549delTGTGTGG	uc003ben.2	+						PARVB_uc003bem.2_Intron|PARVB_uc010gzn.2_Intron|PARVB_uc003beo.2_Intron	NM_013327	NP_037459
TTLL8	164714	broad.mit.edu	37	22	50467012	50467013	+	Intron	INS	-	A	A			2011-2325:2012-337-T	g.chr22:50467012_50467013insA	uc011ark.1	-							NM_001080447	NP_001073916
FANCD2	2177	broad.mit.edu	37	3	10083589	10083590	+	Intron	INS	-	T	T			2011-2325:2012-337-T	g.chr3:10083589_10083590insT	uc003buw.2	+						FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron	NM_033084	NP_149075
GAK	2580	broad.mit.edu	37	4	907700	907701	+	Intron	DEL	CA	-	-			2011-2325:2012-337-T	g.chr4:907700_907701delCA	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_Intron|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246
SORCS2	57537	broad.mit.edu	37	4	7527668	7527669	+	Intron	DEL	CC	-	-			2011-2325:2012-337-T	g.chr4:7527668_7527669delCC	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
PSMB1	5689	broad.mit.edu	37	6	170805329	170805331	+	Intron	DEL	GAG	-	-			2011-2325:2012-337-T	g.chr6:170805329_170805331delGAG	uc003qxq.2	-							NM_002793	
ADAP1	11033	broad.mit.edu	37	7	945081	945081	+	Intron	DEL	A	-	-			2011-2325:2012-337-T	g.chr7:945081delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
CYP2W1	54905	broad.mit.edu	37	7	1027673	1027674	+	Intron	DEL	TG	-	-			2011-2325:2012-337-T	g.chr7:1027673_1027674delTG	uc003sjq.1	+						CYP2W1_uc003sjr.1_Intron	NM_017781	NP_060251
CUX1	1523	broad.mit.edu	37	7	101860085	101860086	+	Intron	INS	-	TCT	TCT	rs380576		2011-2325:2012-337-T	g.chr7:101860085_101860086insTCT	uc003uyx.3	+						CUX1_uc003uys.3_Intron|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530
CUX1	1523	broad.mit.edu	37	7	101860088	101860089	+	Intron	INS	-	A	A			2011-2325:2012-337-T	g.chr7:101860088_101860089insA	uc003uyx.3	+						CUX1_uc003uys.3_Intron|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530
ERICH1	157697	broad.mit.edu	37	8	626280	626281	+	Intron	INS	-	G	G			2011-2325:2012-337-T	g.chr8:626280_626281insG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
ZNF395	55893	broad.mit.edu	37	8	28259089	28259090	+	Intron	INS	-	GC	GC	rs141287627	by1000genomes	2011-2325:2012-337-T	g.chr8:28259089_28259090insGC	uc003xgt.2	-							NM_018660	NP_061130
COL5A1	1289	broad.mit.edu	37	9	137577353	137577359	+	Intron	DEL	TCACCAT	-	-	rs143525729;rs140307113	by1000genomes	2011-2325:2012-337-T	g.chr9:137577353_137577359delTCACCAT	uc004cfe.2	+							NM_000093	NP_000084
EXD3	54932	broad.mit.edu	37	9	140249930	140249931	+	Intron	INS	-	G	G	rs111460149	by1000genomes	2011-2325:2012-337-T	g.chr9:140249930_140249931insG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
NOXA1	10811	broad.mit.edu	37	9	140324261	140324262	+	Intron	INS	-	GG	GG			2011-2325:2012-337-T	g.chr9:140324261_140324262insGG	uc004cmv.2	+						C9orf167_uc011mew.1_Intron|NOXA1_uc004cmu.2_Intron|NOXA1_uc010nch.2_Intron	NM_006647	NP_006638
HSFX2	100130086	broad.mit.edu	37	X	148686970	148686973	+	Intron	DEL	CTTT	-	-			2011-2325:2012-337-T	g.chrX:148686970_148686973delCTTT	uc004fdl.2	-						HSFX1_uc004fdm.2_Intron|TMEM185A_uc011mxp.1_Intron|TMEM185A_uc004fdo.2_Intron|TMEM185A_uc011mxq.1_Intron|TMEM185A_uc004fdp.3_Intron	NM_016153	NP_057237
AGRN	375790	broad.mit.edu	37	1	965524	965525	+	Intron	DEL	TG	-	-			2011-2326:2012-336-T	g.chr1:965524_965525delTG	uc001ack.1	+							NM_198576	NP_940978
SCNN1D	6339	broad.mit.edu	37	1	1224716	1224717	+	Intron	DEL	CC	-	-			2011-2326:2012-336-T	g.chr1:1224716_1224717delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1224736	1224737	+	Intron	DEL	CC	-	-			2011-2326:2012-336-T	g.chr1:1224736_1224737delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRDM16	63976	broad.mit.edu	37	1	3097540	3097541	+	Intron	DEL	AC	-	-			2011-2326:2012-336-T	g.chr1:3097540_3097541delAC	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
SMYD3	64754	broad.mit.edu	37	1	246188217	246188218	+	Intron	INS	-	G	G			2011-2326:2012-336-T	g.chr1:246188217_246188218insG	uc001ibl.2	-						SMYD3_uc001ibk.2_Intron	NM_022743	NP_073580
TMEM132B	114795	broad.mit.edu	37	12	125894422	125894422	+	Intron	DEL	T	-	-			2011-2326:2012-336-T	g.chr12:125894422delT	uc001uhe.1	+							NM_052907	NP_443139
PLEKHG3	26030	broad.mit.edu	37	14	65171103	65171110	+	5'Flank	DEL	CTCCCTCG	-	-	rs72195665;rs71444670;rs36227928		2011-2326:2012-336-T	g.chr14:65171103_65171110delCTCCCTCG	uc001xho.1	+						PLEKHG3_uc001xhn.1_5'Flank	NM_015549	NP_056364
KIAA0284	283638	broad.mit.edu	37	14	105338827	105338830	+	Intron	DEL	GTGT	-	-	rs36135312;rs146297910	by1000genomes	2011-2326:2012-336-T	g.chr14:105338827_105338830delGTGT	uc010axb.2	+						INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Intron	NM_001112726	NP_001106197
PIGQ	9091	broad.mit.edu	37	16	621119	621131	+	Intron	DEL	TGGTGCCCGTGTG	-	-			2011-2326:2012-336-T	g.chr16:621119_621131delTGGTGCCCGTGTG	uc002cho.2	+						PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_Intron|PIGQ_uc002chn.2_Intron|PIGQ_uc010uui.1_5'Flank	NM_148920	NP_683721
GALNS	2588	broad.mit.edu	37	16	88900868	88900869	+	Intron	DEL	CC	-	-			2011-2326:2012-336-T	g.chr16:88900868_88900869delCC	uc002fly.3	-						GALNS_uc010cid.2_Intron|GALNS_uc002flz.3_Intron	NM_000512	NP_000503
RPH3AL	9501	broad.mit.edu	37	17	93711	93712	+	Intron	INS	-	T	T	rs151312982	by1000genomes	2011-2326:2012-336-T	g.chr17:93711_93712insT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	1021770	1021771	+	Intron	INS	-	C	C			2011-2326:2012-336-T	g.chr17:1021770_1021771insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
9-Sep	10801	broad.mit.edu	37	17	75480593	75480594	+	Intron	INS	-	TGA	TGA	rs149437503	by1000genomes	2011-2326:2012-336-T	g.chr17:75480593_75480594insTGA	uc002jts.3	+						SEPT9_uc010wtk.1_Intron|SEPT9_uc002jtt.3_Intron|SEPT9_uc002jtu.3_Intron|SEPT9_uc002jtv.2_Intron|SEPT9_uc002jtw.2_Intron|SEPT9_uc010wtl.1_Intron|SEPT9_uc002jty.3_Intron|SEPT9_uc010wtm.1_Intron|SEPT9_uc010wtn.1_Intron|SEPT9_uc010dhd.2_Intron	NM_001113491	NP_001106963
INSR	3643	broad.mit.edu	37	19	7153086	7153086	+	Intron	DEL	T	-	-	rs117412731	by1000genomes	2011-2326:2012-336-T	g.chr19:7153086delT	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
ZNF558	148156	broad.mit.edu	37	19	8934094	8934094	+	5'Flank	DEL	G	-	-			2011-2326:2012-336-T	g.chr19:8934094delG	uc002mkn.1	-						ZNF558_uc010xkh.1_5'Flank|ZNF558_uc010dwg.1_Intron	NM_144693	NP_653294
CACNG7	59284	broad.mit.edu	37	19	54424471	54424472	+	Intron	INS	-	C	C	rs11414432;rs67538922		2011-2326:2012-336-T	g.chr19:54424471_54424472insC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
CACNG7	59284	broad.mit.edu	37	19	54425509	54425509	+	Intron	DEL	T	-	-	rs72318511		2011-2326:2012-336-T	g.chr19:54425509delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
GPR35	2859	broad.mit.edu	37	2	241565449	241565450	+	Intron	INS	-	G	G			2011-2326:2012-336-T	g.chr2:241565449_241565450insG	uc010fzh.1	+						GPR35_uc010fzi.1_Intron	NM_005301	NP_005292
GPR35	2859	broad.mit.edu	37	2	241565870	241565871	+	5'Flank	INS	-	AG	AG			2011-2326:2012-336-T	g.chr2:241565870_241565871insAG	uc002vzs.1	+						GPR35_uc010fzh.1_Intron|GPR35_uc010fzi.1_Intron	NM_005301	NP_005292
MPPED1	758	broad.mit.edu	37	22	43828681	43828682	+	Intron	INS	-	GA	GA	rs71890701		2011-2326:2012-336-T	g.chr22:43828681_43828682insGA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
TRIO	7204	broad.mit.edu	37	5	14403937	14403938	+	Intron	INS	-	GTT	GTT			2011-2326:2012-336-T	g.chr5:14403937_14403938insGTT	uc003jff.2	+						TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Intron	NM_007118	NP_009049
RNF130	55819	broad.mit.edu	37	5	179442607	179442607	+	Intron	DEL	G	-	-			2011-2326:2012-336-T	g.chr5:179442607delG	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
EGFR	1956	broad.mit.edu	37	7	55234287	55234288	+	Intron	INS	-	TGG	TGG			2011-2326:2012-336-T	g.chr7:55234287_55234288insTGG	uc003tqk.2	+						EGFR_uc003tqi.2_Intron|EGFR_uc003tqj.2_Intron|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Intron|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
PLXNA4	91584	broad.mit.edu	37	7	132248742	132248744	+	Intron	DEL	CTC	-	-			2011-2326:2012-336-T	g.chr7:132248742_132248744delCTC	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
PTPRN2	5799	broad.mit.edu	37	7	158153257	158153258	+	Intron	INS	-	G	G			2011-2326:2012-336-T	g.chr7:158153257_158153258insG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
COL5A1	1289	broad.mit.edu	37	9	137577288	137577289	+	Intron	INS	-	A	A	rs117330509		2011-2326:2012-336-T	g.chr9:137577288_137577289insA	uc004cfe.2	+							NM_000093	NP_000084
NOXA1	10811	broad.mit.edu	37	9	140324769	140324771	+	Intron	DEL	AGA	-	-	rs72178860		2011-2326:2012-336-T	g.chr9:140324769_140324771delAGA	uc004cmv.2	+						C9orf167_uc011mew.1_Intron|NOXA1_uc004cmu.2_Intron|NOXA1_uc010nch.2_Intron	NM_006647	NP_006638
DIP2C	22982	broad.mit.edu	37	10	383178	383179	+	Intron	INS	-	AT	AT			2011-2327:2012-308-T	g.chr10:383178_383179insAT	uc001ifp.2	-							NM_014974	NP_055789
JAKMIP3	282973	broad.mit.edu	37	10	133974657	133974658	+	Intron	INS	-	G	G			2011-2327:2012-308-T	g.chr10:133974657_133974658insG	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
PRDX5	25824	broad.mit.edu	37	11	64088579	64088579	+	Intron	DEL	G	-	-			2011-2327:2012-308-T	g.chr11:64088579delG	uc001nzu.2	+						PRDX5_uc001nzv.2_Intron|PRDX5_uc001nzw.2_Intron|PRDX5_uc001nzx.2_Intron	NM_012094	NP_036226
FAT3	120114	broad.mit.edu	37	11	92439145	92439150	+	Intron	DEL	GTGATG	-	-	rs113154343		2011-2327:2012-308-T	g.chr11:92439145_92439150delGTGATG	uc001pdj.3	+							NM_001008781	NP_001008781
TMEM132D	121256	broad.mit.edu	37	12	130231934	130231935	+	Intron	DEL	CA	-	-			2011-2327:2012-308-T	g.chr12:130231934_130231935delCA	uc009zyl.1	-							NM_133448	NP_597705
COL4A2	1284	broad.mit.edu	37	13	111133970	111133970	+	Intron	DEL	T	-	-	rs67492412		2011-2327:2012-308-T	g.chr13:111133970delT	uc001vqx.2	+							NM_001846	NP_001837
RIN3	79890	broad.mit.edu	37	14	93106558	93106559	+	Intron	DEL	AC	-	-	rs113342845		2011-2327:2012-308-T	g.chr14:93106558_93106559delAC	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
RIN3	79890	broad.mit.edu	37	14	93106563	93106564	+	Intron	DEL	GC	-	-	rs61992593		2011-2327:2012-308-T	g.chr14:93106563_93106564delGC	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
ADAMTS17	170691	broad.mit.edu	37	15	100598506	100598507	+	Intron	INS	-	T	T	rs150896439;rs68090700	by1000genomes	2011-2327:2012-308-T	g.chr15:100598506_100598507insT	uc002bvv.1	-							NM_139057	NP_620688
CPNE7	27132	broad.mit.edu	37	16	89654473	89654473	+	Intron	DEL	C	-	-			2011-2327:2012-308-T	g.chr16:89654473delC	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
DPEP1	1800	broad.mit.edu	37	16	89701013	89701013	+	Intron	DEL	T	-	-			2011-2327:2012-308-T	g.chr16:89701013delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701019	89701019	+	Intron	DEL	C	-	-			2011-2327:2012-308-T	g.chr16:89701019delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
ABR	29	broad.mit.edu	37	17	1021509	1021510	+	Intron	INS	-	C	C			2011-2327:2012-308-T	g.chr17:1021509_1021510insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
USP43	124739	broad.mit.edu	37	17	9619039	9619040	+	Intron	DEL	TG	-	-			2011-2327:2012-308-T	g.chr17:9619039_9619040delTG	uc010cod.2	+						USP43_uc002gma.3_Intron|USP43_uc010vva.1_Intron|USP43_uc010coe.2_Intron|USP43_uc002gmc.3_Intron	NM_153210	NP_694942
NOTCH3	4854	broad.mit.edu	37	19	15273583	15273584	+	Intron	DEL	TT	-	-	rs5827278;rs57540484		2011-2327:2012-308-T	g.chr19:15273583_15273584delTT	uc002nan.2	-							NM_000435	NP_000426
PRKCG	5582	broad.mit.edu	37	19	54383939	54383942	+	5'Flank	DEL	AGAC	-	-	rs148408358;rs147747270;rs147903739	by1000genomes	2011-2327:2012-308-T	g.chr19:54383939_54383942delAGAC	uc002qcq.1	+						PRKCG_uc010eqz.1_5'Flank|PRKCG_uc010yef.1_5'Flank|PRKCG_uc010yeg.1_5'Flank|PRKCG_uc010yeh.1_5'Flank	NM_002739	NP_002730
TTC27	55622	broad.mit.edu	37	2	32980688	32980689	+	Intron	INS	-	G	G			2011-2327:2012-308-T	g.chr2:32980688_32980689insG	uc002rom.2	+						TTC27_uc010ymx.1_Intron|TTC27_uc002ron.2_Intron	NM_017735	NP_060205
STAT1	6772	broad.mit.edu	37	2	191875369	191875370	+	Intron	DEL	TC	-	-	rs75760962;rs151254208		2011-2327:2012-308-T	g.chr2:191875369_191875370delTC	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron|STAT1_uc010fsf.1_Intron	NM_007315	NP_009330
TAF4	6874	broad.mit.edu	37	20	60557433	60557434	+	Intron	INS	-	A	A	rs149797595;rs68029920	by1000genomes	2011-2327:2012-308-T	g.chr20:60557433_60557434insA	uc002ybs.2	-							NM_003185	NP_003176
MPPED1	758	broad.mit.edu	37	22	43828766	43828767	+	Intron	INS	-	G	G			2011-2327:2012-308-T	g.chr22:43828766_43828767insG	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
FAM19A5	25817	broad.mit.edu	37	22	48930004	48930005	+	Intron	INS	-	G	G	rs147079066	by1000genomes	2011-2327:2012-308-T	g.chr22:48930004_48930005insG	uc003bim.3	+							NM_001082967	NP_001076436
GRK7	131890	broad.mit.edu	37	3	141529140	141529142	+	Intron	DEL	CTC	-	-			2011-2327:2012-308-T	g.chr3:141529140_141529142delCTC	uc011bnd.1	+							NM_139209	NP_631948
SORCS2	57537	broad.mit.edu	37	4	7479087	7479096	+	Intron	DEL	GGCTGACCGT	-	-	rs62277642;rs78756513;rs79892419		2011-2327:2012-308-T	g.chr4:7479087_7479096delGGCTGACCGT	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
ZDHHC11	79844	broad.mit.edu	37	5	847115	847116	+	Intron	INS	-	G	G			2011-2327:2012-308-T	g.chr5:847115_847116insG	uc011cma.1	-						ZDHHC11_uc003jbj.2_Intron	NM_024786	NP_079062
SLC12A7	10723	broad.mit.edu	37	5	1073398	1073398	+	Intron	DEL	G	-	-			2011-2327:2012-308-T	g.chr5:1073398delG	uc003jbu.2	-							NM_006598	NP_006589
ADAMTS16	170690	broad.mit.edu	37	5	5305406	5305407	+	Intron	DEL	CA	-	-			2011-2327:2012-308-T	g.chr5:5305406_5305407delCA	uc003jdl.2	+							NM_139056	NP_620687
FANCE	2178	broad.mit.edu	37	6	35426417	35426417	+	Intron	DEL	T	-	-	rs71794281		2011-2327:2012-308-T	g.chr6:35426417delT	uc003oko.1	+						FANCE_uc010jvw.1_Intron	NM_021922	NP_068741
SYNE1	23345	broad.mit.edu	37	6	152578100	152578100	+	Intron	DEL	T	-	-			2011-2327:2012-308-T	g.chr6:152578100delT	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
ARHGEF10	9639	broad.mit.edu	37	8	1780565	1780566	+	Intron	INS	-	AC	AC	rs144626635	by1000genomes	2011-2327:2012-308-T	g.chr8:1780565_1780566insAC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
CSMD3	114788	broad.mit.edu	37	8	113563156	113563157	+	Intron	INS	-	A	A			2011-2327:2012-308-T	g.chr8:113563156_113563157insA	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
TRAPPC9	83696	broad.mit.edu	37	8	141167330	141167330	+	Intron	DEL	T	-	-			2011-2327:2012-308-T	g.chr8:141167330delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
RALGDS	5900	broad.mit.edu	37	9	135999494	135999495	+	5'Flank	INS	-	AG	AG			2011-2327:2012-308-T	g.chr9:135999494_135999495insAG	uc004cco.2	-						RALGDS_uc004ccp.2_5'Flank|RALGDS_uc004ccq.2_5'Flank|RALGDS_uc004ccr.2_Intron|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Intron|RALGDS_uc011mcw.1_Intron	NM_006266	NP_006257
SCNN1D	6339	broad.mit.edu	37	1	1225416	1225417	+	Intron	INS	-	CC	CC			2011-2328:2012-1336-T	g.chr1:1225416_1225417insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
ADAM12	8038	broad.mit.edu	37	10	127940270	127940271	+	Intron	INS	-	A	A			2011-2328:2012-1336-T	g.chr10:127940270_127940271insA	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
JAKMIP3	282973	broad.mit.edu	37	10	133973353	133973354	+	Intron	INS	-	A	A			2011-2328:2012-1336-T	g.chr10:133973353_133973354insA	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
ETV6	2120	broad.mit.edu	37	12	12200687	12200688	+	Intron	INS	-	TGTG	TGTG			2011-2328:2012-1336-T	g.chr12:12200687_12200688insTGTG	uc001raa.1	+						uc001rab.1_5'Flank	NM_001987	NP_001978
COL4A1	1282	broad.mit.edu	37	13	110908230	110908231	+	Intron	INS	-	A	A	rs147787666		2011-2328:2012-1336-T	g.chr13:110908230_110908231insA	uc001vqw.3	-						COL4A1_uc010agl.2_Intron	NM_001845	NP_001836
GAS6	2621	broad.mit.edu	37	13	114544719	114544720	+	Intron	INS	-	T	T			2011-2328:2012-1336-T	g.chr13:114544719_114544720insT	uc001vud.2	-						uc010tki.1_5'Flank	NM_000820	NP_000811
INF2	64423	broad.mit.edu	37	14	105187056	105187057	+	Intron	INS	-	C	C			2011-2328:2012-1336-T	g.chr14:105187056_105187057insC	uc010tyi.1	+							NM_022489	NP_071934
ABR	29	broad.mit.edu	37	17	1021854	1021855	+	Intron	INS	-	C	C	rs71358535		2011-2328:2012-1336-T	g.chr17:1021854_1021855insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
TIMP2	7077	broad.mit.edu	37	17	76889375	76889375	+	Intron	DEL	G	-	-			2011-2328:2012-1336-T	g.chr17:76889375delG	uc010wty.1	-						TIMP2_uc002jwf.2_Intron|uc002jwg.1_Intron	NM_003255	NP_003246
TBCD	6904	broad.mit.edu	37	17	80807066	80807067	+	Intron	INS	-	C	C	rs57484051		2011-2328:2012-1336-T	g.chr17:80807066_80807067insC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
ZNF236	7776	broad.mit.edu	37	18	74679557	74679558	+	Intron	INS	-	GGT	GGT	rs113352608		2011-2328:2012-1336-T	g.chr18:74679557_74679558insGGT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
LPPR3	79948	broad.mit.edu	37	19	815467	815469	+	Intron	DEL	CGT	-	-	rs59458440		2011-2328:2012-1336-T	g.chr19:815467_815469delCGT	uc002lpx.1	-						LPPR3_uc010dru.1_5'Flank|LPPR3_uc002lpw.1_Intron|LPPR3_uc002lpy.1_Intron	NM_024888	NP_079164
SBNO2	22904	broad.mit.edu	37	19	1142158	1142159	+	Intron	INS	-	C	C	rs143272765		2011-2328:2012-1336-T	g.chr19:1142158_1142159insC	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
HDGFRP2	84717	broad.mit.edu	37	19	4492888	4492889	+	Intron	INS	-	TG	TG			2011-2328:2012-1336-T	g.chr19:4492888_4492889insTG	uc002mao.2	+						HDGFRP2_uc002map.2_Intron|HDGFRP2_uc010dtz.1_Intron	NM_001001520	NP_001001520
RMND5A	64795	broad.mit.edu	37	2	87624778	87624779	+	Intron	INS	-	C	C			2011-2328:2012-1336-T	g.chr2:87624778_87624779insC	uc002srs.3	+								
C21orf56	84221	broad.mit.edu	37	21	47590279	47590279	+	Intron	DEL	C	-	-	rs72066640		2011-2328:2012-1336-T	g.chr21:47590279delC	uc011afu.1	-						C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
C21orf56	84221	broad.mit.edu	37	21	47590317	47590318	+	Intron	INS	-	C	C			2011-2328:2012-1336-T	g.chr21:47590317_47590318insC	uc011afu.1	-						C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
SLC12A7	10723	broad.mit.edu	37	5	1072334	1072344	+	Intron	DEL	AGCCCCCAGTG	-	-	rs71281503		2011-2328:2012-1336-T	g.chr5:1072334_1072344delAGCCCCCAGTG	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1273481	1273482	+	Intron	INS	-	CA	CA			2011-2328:2012-1336-T	g.chr5:1273481_1273482insCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
CTNND2	1501	broad.mit.edu	37	5	11182317	11182318	+	Intron	INS	-	GT	GT			2011-2328:2012-1336-T	g.chr5:11182317_11182318insGT	uc003jfa.1	-						CTNND2_uc010itt.2_Intron|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron|CTNND2_uc011cmx.1_Intron	NM_001332	NP_001323
ADAMTS2	9509	broad.mit.edu	37	5	178639749	178639750	+	Intron	INS	-	C	C	rs111833467		2011-2328:2012-1336-T	g.chr5:178639749_178639750insC	uc003mjw.2	-						ADAMTS2_uc011dgm.1_Intron	NM_014244	NP_055059
GRM4	2914	broad.mit.edu	37	6	34040383	34040384	+	Intron	INS	-	C	C			2011-2328:2012-1336-T	g.chr6:34040383_34040384insC	uc003oir.3	-						GRM4_uc011dsn.1_Intron|GRM4_uc010jvh.2_Intron|GRM4_uc010jvi.2_Intron|GRM4_uc011dsl.1_Intron|GRM4_uc003oiq.2_Intron|GRM4_uc011dsm.1_Intron	NM_000841	NP_000832
ADAP1	11033	broad.mit.edu	37	7	983069	983070	+	Intron	DEL	AG	-	-			2011-2328:2012-1336-T	g.chr7:983069_983070delAG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
AUTS2	26053	broad.mit.edu	37	7	69961748	69961749	+	Intron	INS	-	CACA	CACA			2011-2328:2012-1336-T	g.chr7:69961748_69961749insCACA	uc003tvw.3	+						AUTS2_uc003tvx.3_Intron	NM_015570	NP_056385
PLXNA4	91584	broad.mit.edu	37	7	132292868	132292870	+	Intron	DEL	CAC	-	-	rs142106118;rs11768185	by1000genomes	2011-2328:2012-1336-T	g.chr7:132292868_132292870delCAC	uc003vrb.2	-							NM_181775	NP_861440
PTPRN2	5799	broad.mit.edu	37	7	157449698	157449699	+	Intron	DEL	AT	-	-			2011-2328:2012-1336-T	g.chr7:157449698_157449699delAT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
POMT1	10585	broad.mit.edu	37	9	134391317	134391317	+	Intron	DEL	G	-	-	rs75256542		2011-2328:2012-1336-T	g.chr9:134391317delG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391321	134391321	+	Intron	DEL	G	-	-			2011-2328:2012-1336-T	g.chr9:134391321delG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
SPSB1	80176	broad.mit.edu	37	1	9354328	9354329	+	Intron	INS	-	GTGA	GTGA	rs117359473;rs138940191		2011-2329:2012-1318-T	g.chr1:9354328_9354329insGTGA	uc010oae.1	+							NM_025106	NP_079382
FAIM3	9214	broad.mit.edu	37	1	207097707	207097708	+	5'Flank	INS	-	GT	GT			2011-2329:2012-1318-T	g.chr1:207097707_207097708insGT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
USH2A	7399	broad.mit.edu	37	1	215931923	215931923	+	Intron	DEL	T	-	-			2011-2329:2012-1318-T	g.chr1:215931923delT	uc001hku.1	-							NM_206933	NP_996816
CABC1	56997	broad.mit.edu	37	1	227148206	227148208	+	Intron	DEL	TGG	-	-			2011-2329:2012-1318-T	g.chr1:227148206_227148208delTGG	uc001hqm.1	+						CABC1_uc010pvp.1_Intron|CABC1_uc001hqn.1_Intron|CABC1_uc009xeq.1_Intron|CABC1_uc010pvq.1_Intron	NM_020247	NP_064632
ADARB2	105	broad.mit.edu	37	10	1282188	1282189	+	Intron	INS	-	C	C			2011-2329:2012-1318-T	g.chr10:1282188_1282189insC	uc009xhq.2	-							NM_018702	NP_061172
KCNMA1	3778	broad.mit.edu	37	10	79266466	79266467	+	Intron	DEL	GA	-	-	rs66954176		2011-2329:2012-1318-T	g.chr10:79266466_79266467delGA	uc001jxn.2	-						KCNMA1_uc001jxj.2_Intron|KCNMA1_uc001jxo.2_Intron|KCNMA1_uc001jxm.2_Intron|KCNMA1_uc001jxq.2_Intron	NM_001161352	NP_001154824
LRRC27	80313	broad.mit.edu	37	10	134172181	134172183	+	Intron	DEL	AGT	-	-	rs76759658		2011-2329:2012-1318-T	g.chr10:134172181_134172183delAGT	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
LRRC27	80313	broad.mit.edu	37	10	134172210	134172212	+	Intron	DEL	AGT	-	-			2011-2329:2012-1318-T	g.chr10:134172210_134172212delAGT	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
LRRC27	80313	broad.mit.edu	37	10	134172236	134172238	+	Intron	DEL	AGC	-	-			2011-2329:2012-1318-T	g.chr10:134172236_134172238delAGC	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
RNH1	6050	broad.mit.edu	37	11	497211	497212	+	Intron	INS	-	CACA	CACA	rs146656956	by1000genomes	2011-2329:2012-1318-T	g.chr11:497211_497212insCACA	uc001lpk.1	-						RNH1_uc001lpl.1_Intron|RNH1_uc001lpm.1_Intron|RNH1_uc001lpn.1_Intron|RNH1_uc001lpo.1_Intron|RNH1_uc009ybw.1_Intron|RNH1_uc001lpp.1_Intron|RNH1_uc001lpt.1_Intron|RNH1_uc001lpq.1_Intron|RNH1_uc001lpr.1_Intron|RNH1_uc001lps.1_Intron	NM_203389	NP_976323
TSPAN9	10867	broad.mit.edu	37	12	3377442	3377443	+	Intron	INS	-	TG	TG			2011-2329:2012-1318-T	g.chr12:3377442_3377443insTG	uc001qlp.2	+							NM_006675	NP_006666
GPR133	283383	broad.mit.edu	37	12	131530812	131530812	+	Intron	DEL	C	-	-	rs66833346		2011-2329:2012-1318-T	g.chr12:131530812delC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
GPR133	283383	broad.mit.edu	37	12	131530814	131530814	+	Intron	DEL	C	-	-			2011-2329:2012-1318-T	g.chr12:131530814delC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
FAM70B	348013	broad.mit.edu	37	13	114477723	114477729	+	Intron	DEL	CACACAC	-	-			2011-2329:2012-1318-T	g.chr13:114477723_114477729delCACACAC	uc001vuh.2	+							NM_182614	NP_872420
KIF26A	26153	broad.mit.edu	37	14	104631923	104631924	+	Intron	DEL	TG	-	-			2011-2329:2012-1318-T	g.chr14:104631923_104631924delTG	uc001yos.3	+							NM_015656	NP_056471
MFGE8	4240	broad.mit.edu	37	15	89444454	89444455	+	Intron	DEL	AT	-	-	rs112212637		2011-2329:2012-1318-T	g.chr15:89444454_89444455delAT	uc002bng.3	-						MFGE8_uc002bnf.3_Intron|MFGE8_uc002bnh.3_Intron|MFGE8_uc010bnn.2_Intron|MFGE8_uc010upq.1_Intron|MFGE8_uc010upr.1_Intron	NM_005928	NP_005919
ARHGAP17	55114	broad.mit.edu	37	16	25029262	25029262	+	5'Flank	DEL	T	-	-	rs79150258		2011-2329:2012-1318-T	g.chr16:25029262delT	uc002dnb.2	-						ARHGAP17_uc002dnc.2_5'Flank|ARHGAP17_uc010vcf.1_5'Flank|ARHGAP17_uc002dng.1_5'Flank	NM_001006634	NP_001006635
CALB2	794	broad.mit.edu	37	16	71418630	71418631	+	Intron	INS	-	A	A			2011-2329:2012-1318-T	g.chr16:71418630_71418631insA	uc002faa.3	+						CALB2_uc010vme.1_Intron|CALB2_uc002fac.3_Intron	NM_001740	NP_001731
ACSF3	197322	broad.mit.edu	37	16	89208974	89208975	+	Intron	INS	-	AG	AG			2011-2329:2012-1318-T	g.chr16:89208974_89208975insAG	uc002fmp.2	+						ACSF3_uc010cig.1_Intron|ACSF3_uc010cih.1_Intron|ACSF3_uc002fmq.1_Intron|ACSF3_uc010cii.1_Intron|ACSF3_uc002fmr.1_Intron	NM_174917	NP_777577
BRCA1	672	broad.mit.edu	37	17	41278005	41278006	+	5'Flank	INS	-	TGT	TGT	rs143017950	by1000genomes	2011-2329:2012-1318-T	g.chr17:41278005_41278006insTGT	uc002icq.2	-						BRCA1_uc010whp.1_Intron|NBR2_uc002idf.2_Intron|NBR2_uc010czb.1_Intron|NBR2_uc002idg.2_Intron|NBR2_uc002idh.2_Intron|BRCA1_uc010whl.1_5'Flank|BRCA1_uc010whm.1_5'Flank|BRCA1_uc002icp.3_5'Flank|BRCA1_uc002icu.2_5'Flank|BRCA1_uc010cyx.2_5'Flank|BRCA1_uc002ict.2_5'Flank|BRCA1_uc010whn.1_5'Flank|BRCA1_uc010who.1_5'Flank|BRCA1_uc002idc.1_5'Flank|BRCA1_uc010whr.1_5'Flank|BRCA1_uc002idd.2_5'Flank|BRCA1_uc010cyy.1_5'Flank|BRCA1_uc010whs.1_5'Flank|BRCA1_uc010cyz.2_5'Flank|BRCA1_uc010cza.2_5'Flank|BRCA1_uc010wht.1_5'Flank	NM_007294	NP_009225
RPTOR	57521	broad.mit.edu	37	17	78608443	78608453	+	Intron	DEL	ATACTGTATGT	-	-	rs140181873;rs72281071;rs116652321;rs72042835	by1000genomes;by1000genomes	2011-2329:2012-1318-T	g.chr17:78608443_78608453delATACTGTATGT	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78814113	78814114	+	Intron	INS	-	G	G	rs146204651	by1000genomes	2011-2329:2012-1318-T	g.chr17:78814113_78814114insG	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
BAIAP2	10458	broad.mit.edu	37	17	79078806	79078807	+	Intron	INS	-	C	C			2011-2329:2012-1318-T	g.chr17:79078806_79078807insC	uc002jzg.2	+						BAIAP2_uc002jyz.3_Intron|BAIAP2_uc002jza.2_Intron|BAIAP2_uc002jzc.2_Intron|BAIAP2_uc002jzb.2_Intron|BAIAP2_uc002jzd.2_Intron|BAIAP2_uc002jzf.2_Intron|BAIAP2_uc002jze.2_Intron|BAIAP2_uc010wuh.1_Intron|BAIAP2_uc002jzh.2_Intron|BAIAP2_uc010wui.1_Intron	NM_017451	NP_059345
AATK	9625	broad.mit.edu	37	17	79114560	79114561	+	Intron	INS	-	A	A	rs144645484	by1000genomes	2011-2329:2012-1318-T	g.chr17:79114560_79114561insA	uc010dia.2	-							NM_001080395	NP_001073864
ZNF521	25925	broad.mit.edu	37	18	22932553	22932553	+	5'Flank	DEL	A	-	-			2011-2329:2012-1318-T	g.chr18:22932553delA	uc002kvk.2	-						ZNF521_uc010xbe.1_5'Flank|ZNF521_uc010dly.2_5'Flank|ZNF521_uc002kvl.2_5'Flank	NM_015461	NP_056276
FBN3	84467	broad.mit.edu	37	19	8150940	8150940	+	Intron	DEL	A	-	-	rs113722889		2011-2329:2012-1318-T	g.chr19:8150940delA	uc002mjf.2	-						FBN3_uc002mje.2_Intron	NM_032447	NP_115823
FBN3	84467	broad.mit.edu	37	19	8150949	8150950	+	Intron	INS	-	G	G			2011-2329:2012-1318-T	g.chr19:8150949_8150950insG	uc002mjf.2	-						FBN3_uc002mje.2_Intron	NM_032447	NP_115823
U2AF2	11338	broad.mit.edu	37	19	56181835	56181835	+	Intron	DEL	G	-	-	rs146196962	by1000genomes	2011-2329:2012-1318-T	g.chr19:56181835delG	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
U2AF2	11338	broad.mit.edu	37	19	56181864	56181865	+	Intron	INS	-	C	C			2011-2329:2012-1318-T	g.chr19:56181864_56181865insC	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
ZSCAN22	342945	broad.mit.edu	37	19	58838002	58838002	+	5'Flank	DEL	G	-	-			2011-2329:2012-1318-T	g.chr19:58838002delG	uc002qsc.2	+							NM_181846	NP_862829
DYSF	8291	broad.mit.edu	37	2	71844937	71844938	+	Intron	DEL	TG	-	-			2011-2329:2012-1318-T	g.chr2:71844937_71844938delTG	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845539	71845540	+	Intron	INS	-	AT	AT			2011-2329:2012-1318-T	g.chr2:71845539_71845540insAT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
SFTPB	6439	broad.mit.edu	37	2	85893483	85893484	+	Intron	DEL	TG	-	-	rs72527559		2011-2329:2012-1318-T	g.chr2:85893483_85893484delTG	uc002sqh.2	-						SFTPB_uc002sqi.2_Intron|SFTPB_uc002sqj.2_Intron	NM_198843	NP_942140
AGAP1	116987	broad.mit.edu	37	2	236711445	236711446	+	Intron	INS	-	GTG	GTG			2011-2329:2012-1318-T	g.chr2:236711445_236711446insGTG	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
ESPNL	339768	broad.mit.edu	37	2	239034690	239034693	+	Intron	DEL	TGTG	-	-	rs116731782		2011-2329:2012-1318-T	g.chr2:239034690_239034693delTGTG	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
HDAC4	9759	broad.mit.edu	37	2	240154325	240154325	+	Intron	DEL	C	-	-			2011-2329:2012-1318-T	g.chr2:240154325delC	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
HDAC4	9759	broad.mit.edu	37	2	240154379	240154379	+	Intron	DEL	C	-	-			2011-2329:2012-1318-T	g.chr2:240154379delC	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
HDAC4	9759	broad.mit.edu	37	2	240154395	240154395	+	Intron	DEL	G	-	-			2011-2329:2012-1318-T	g.chr2:240154395delG	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
HDAC4	9759	broad.mit.edu	37	2	240154536	240154537	+	Intron	INS	-	C	C			2011-2329:2012-1318-T	g.chr2:240154536_240154537insC	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
SNPH	9751	broad.mit.edu	37	20	1258392	1258393	+	Intron	DEL	TG	-	-			2011-2329:2012-1318-T	g.chr20:1258392_1258393delTG	uc002wes.2	+						SNPH_uc002wet.2_Intron	NM_014723	NP_055538
OPRL1	4987	broad.mit.edu	37	20	62719950	62719951	+	Intron	INS	-	A	A			2011-2329:2012-1318-T	g.chr20:62719950_62719951insA	uc002yic.2	+						OPRL1_uc002yid.2_Intron	NM_182647	NP_872588
OPRL1	4987	broad.mit.edu	37	20	62719952	62719953	+	Intron	INS	-	C	C	rs75452984		2011-2329:2012-1318-T	g.chr20:62719952_62719953insC	uc002yic.2	+						OPRL1_uc002yid.2_Intron	NM_182647	NP_872588
MN1	4330	broad.mit.edu	37	22	28194934	28194936	+	In_Frame_Del	DEL	TGC	-	-	rs34890218;rs45480998;rs45597040		2011-2329:2012-1318-T	g.chr22:28194934_28194936delTGC	uc003adj.2	-	1	2551_2553	c.1596_1598delGCA	c.(1594-1599)CAGCAA>CAA	p.532_533QQ>Q		NM_002430	NP_002421
TGFBR2	7048	broad.mit.edu	37	3	30691872	30691872	+	Frame_Shift_Del	DEL	A	-	-			2011-2329:2012-1318-T	g.chr3:30691872delA	uc003ceo.2	+	3	756	c.374delA	c.(373-375)GAAfs	p.E125fs	TGFBR2_uc003cen.2_Frame_Shift_Del_p.E150fs	NM_003242	NP_003233
PBRM1	55193	broad.mit.edu	37	3	52696311	52696311	+	Intron	DEL	A	-	-			2011-2329:2012-1318-T	g.chr3:52696311delA	uc003des.2	-						PBRM1_uc003dex.2_Intron|PBRM1_uc003deq.2_Intron|PBRM1_uc003der.2_Intron|PBRM1_uc003det.2_Intron|PBRM1_uc003deu.2_Intron|PBRM1_uc003dev.2_Intron|PBRM1_uc003dew.2_Intron|PBRM1_uc010hmk.1_Intron|PBRM1_uc003dey.2_Intron|PBRM1_uc003dez.1_Intron|PBRM1_uc003dfb.1_Intron	NM_181042	NP_060635
IFT122	55764	broad.mit.edu	37	3	129235130	129235131	+	Intron	DEL	CA	-	-			2011-2329:2012-1318-T	g.chr3:129235130_129235131delCA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
GAK	2580	broad.mit.edu	37	4	850184	850186	+	Intron	DEL	CAC	-	-	rs139579125	by1000genomes	2011-2329:2012-1318-T	g.chr4:850184_850186delCAC	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	881055	881064	+	Intron	DEL	ACTCACGTGT	-	-	rs149567125;rs112995120	by1000genomes	2011-2329:2012-1318-T	g.chr4:881055_881064delACTCACGTGT	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
NOP14	8602	broad.mit.edu	37	4	2947924	2947925	+	Intron	INS	-	CTCA	CTCA	rs143257718		2011-2329:2012-1318-T	g.chr4:2947924_2947925insCTCA	uc003ggj.1	-						C4orf10_uc003gge.1_Intron|C4orf10_uc003ggh.2_Intron|C4orf10_uc003ggi.1_Intron|NOP14_uc010icp.2_Intron|NOP14_uc003ggk.3_Intron|NOP14_uc003ggl.2_Intron	NM_003703	NP_003694
HTT	3064	broad.mit.edu	37	4	3101357	3101358	+	Intron	INS	-	TG	TG	rs10665872		2011-2329:2012-1318-T	g.chr4:3101357_3101358insTG	uc011bvq.1	+							NM_002111	NP_002102
RGS12	6002	broad.mit.edu	37	4	3377001	3377002	+	Intron	INS	-	C	C			2011-2329:2012-1318-T	g.chr4:3377001_3377002insC	uc003ggw.2	+						RGS12_uc003ggu.2_Intron|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_Intron|RGS12_uc003ggv.2_Intron|RGS12_uc003ggy.1_Intron|RGS12_uc010ict.1_Intron|RGS12_uc003ggz.2_Intron	NM_198229	NP_937872
MTNR1A	4543	broad.mit.edu	37	4	187461961	187461962	+	Intron	INS	-	GAAG	GAAG	rs34538990		2011-2329:2012-1318-T	g.chr4:187461961_187461962insGAAG	uc003izd.1	-							NM_005958	NP_005949
CEP72	55722	broad.mit.edu	37	5	650138	650139	+	Intron	DEL	TG	-	-			2011-2329:2012-1318-T	g.chr5:650138_650139delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650147	650148	+	Intron	INS	-	G	G			2011-2329:2012-1318-T	g.chr5:650147_650148insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650151	650152	+	Intron	DEL	TG	-	-			2011-2329:2012-1318-T	g.chr5:650151_650152delTG	uc003jbf.2	+							NM_018140	NP_060610
NKD2	85409	broad.mit.edu	37	5	1037066	1037067	+	Intron	DEL	GT	-	-	rs67132510		2011-2329:2012-1318-T	g.chr5:1037066_1037067delGT	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
SLC6A3	6531	broad.mit.edu	37	5	1422600	1422601	+	Intron	DEL	CA	-	-			2011-2329:2012-1318-T	g.chr5:1422600_1422601delCA	uc003jck.2	-							NM_001044	NP_001035
SLC6A3	6531	broad.mit.edu	37	5	1422638	1422639	+	Intron	DEL	CA	-	-	rs67284649		2011-2329:2012-1318-T	g.chr5:1422638_1422639delCA	uc003jck.2	-							NM_001044	NP_001035
PIK3R1	5295	broad.mit.edu	37	5	67575339	67575339	+	Intron	DEL	G	-	-	rs76443259		2011-2329:2012-1318-T	g.chr5:67575339delG	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron	NM_181523	NP_852664
COL23A1	91522	broad.mit.edu	37	5	177765587	177765589	+	Intron	DEL	TGG	-	-	rs57346711		2011-2329:2012-1318-T	g.chr5:177765587_177765589delTGG	uc003mje.2	-							NM_173465	NP_775736
ADAMTS2	9509	broad.mit.edu	37	5	178561798	178561798	+	Intron	DEL	C	-	-			2011-2329:2012-1318-T	g.chr5:178561798delC	uc003mjw.2	-							NM_014244	NP_055059
HLA-G	3135	broad.mit.edu	37	6	29854982	29854983	+	Intron	DEL	AC	-	-	rs142373123;rs146815445		2011-2329:2012-1318-T	g.chr6:29854982_29854983delAC	uc011dmb.1	+						HLA-H_uc003nod.2_5'Flank|HLA-H_uc010jro.2_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29854983	29854983	+	Intron	DEL	C	-	-	rs146815445		2011-2329:2012-1318-T	g.chr6:29854983delC	uc011dmb.1	+						HLA-H_uc003nod.2_5'Flank|HLA-H_uc010jro.2_5'Flank	NM_002127	NP_002118
RNGTT	8732	broad.mit.edu	37	6	89638989	89638989	+	Intron	DEL	A	-	-	rs111616936		2011-2329:2012-1318-T	g.chr6:89638989delA	uc003pmr.2	-						RNGTT_uc003pms.2_Intron|RNGTT_uc011dzu.1_Intron|RNGTT_uc003pmt.2_Intron	NM_003800	NP_003791
PKD1L1	168507	broad.mit.edu	37	7	47979920	47979921	+	Intron	INS	-	A	A			2011-2329:2012-1318-T	g.chr7:47979920_47979921insA	uc003tny.1	-							NM_138295	NP_612152
CUX1	1523	broad.mit.edu	37	7	101860088	101860089	+	Intron	INS	-	A	A			2011-2329:2012-1318-T	g.chr7:101860088_101860089insA	uc003uyx.3	+						CUX1_uc003uys.3_Intron|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530
PTPRN2	5799	broad.mit.edu	37	7	157864147	157864148	+	Intron	INS	-	GG	GG	rs117111043	by1000genomes	2011-2329:2012-1318-T	g.chr7:157864147_157864148insGG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157864148	157864149	+	Intron	INS	-	G	G	rs117111043	by1000genomes	2011-2329:2012-1318-T	g.chr7:157864148_157864149insG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157981026	157981027	+	Intron	INS	-	T	T	rs11376534;rs33977963		2011-2329:2012-1318-T	g.chr7:157981026_157981027insT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
WRN	7486	broad.mit.edu	37	8	30933817	30933817	+	Intron	DEL	T	-	-			2011-2329:2012-1318-T	g.chr8:30933817delT	uc003xio.3	+							NM_000553	NP_000544
PKHD1L1	93035	broad.mit.edu	37	8	110473965	110473966	+	Intron	INS	-	T	T	rs144083788;rs140313571	by1000genomes;by1000genomes	2011-2329:2012-1318-T	g.chr8:110473965_110473966insT	uc003yne.2	+							NM_177531	NP_803875
TRAPPC9	83696	broad.mit.edu	37	8	141282112	141282113	+	Intron	INS	-	AG	AG	rs150940391	by1000genomes	2011-2329:2012-1318-T	g.chr8:141282112_141282113insAG	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
NUP214	8021	broad.mit.edu	37	9	134014667	134014667	+	Splice_Site	DEL	G	-	-			2011-2329:2012-1318-T	g.chr9:134014667delG	uc004cag.2	+	10	1117	c.1006_splice	c.e10-1	p.I336_splice	NUP214_uc004cah.2_Splice_Site_p.I336_splice|NUP214_uc004caf.1_Splice_Site_p.I336_splice	NM_005085	NP_005076
POMT1	10585	broad.mit.edu	37	9	134391370	134391371	+	Intron	INS	-	GG	GG			2011-2329:2012-1318-T	g.chr9:134391370_134391371insGG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
OBP2B	29989	broad.mit.edu	37	9	136081365	136081365	+	Intron	DEL	C	-	-			2011-2329:2012-1318-T	g.chr9:136081365delC	uc004ccz.2	-						OBP2B_uc010nad.2_Intron|OBP2B_uc011mcy.1_Intron	NM_014581	NP_055396
PNPLA7	375775	broad.mit.edu	37	9	140393688	140393689	+	Intron	DEL	AC	-	-			2011-2329:2012-1318-T	g.chr9:140393688_140393689delAC	uc004cnf.2	-						C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Intron	NM_152286	NP_689499
FAM48B1	100130302	broad.mit.edu	37	X	24382374	24382376	+	In_Frame_Del	DEL	TGC	-	-			2011-2329:2012-1318-T	g.chrX:24382374_24382376delTGC	uc011mjx.1	+	1	1497_1499	c.1497_1499delTGC	c.(1495-1500)ATTGCT>ATT	p.A517del		NM_001136234	NP_001129706
OPHN1	4983	broad.mit.edu	37	X	67459062	67459062	+	Intron	DEL	G	-	-	rs67901004		2011-2329:2012-1318-T	g.chrX:67459062delG	uc004dww.3	-						OPHN1_uc011mpg.1_Intron|OPHN1_uc004dwx.2_Intron	NM_002547	NP_002538
IL9R	3581	broad.mit.edu	37	X	155238641	155238642	+	Intron	DEL	TG	-	-			2011-2329:2012-1318-T	g.chrX:155238641_155238642delTG	uc004fnv.1	+						IL9R_uc004fnu.1_Intron	NM_002186	NP_002177
AGRN	375790	broad.mit.edu	37	1	965007	965015	+	Intron	DEL	GCATGTGTG	-	-	rs71576588;rs35510832		2011-2330:2012-1337-T	g.chr1:965007_965015delGCATGTGTG	uc001ack.1	+							NM_198576	NP_940978
AGRN	375790	broad.mit.edu	37	1	965799	965800	+	Intron	DEL	GT	-	-			2011-2330:2012-1337-T	g.chr1:965799_965800delGT	uc001ack.1	+							NM_198576	NP_940978
PRKCZ	5590	broad.mit.edu	37	1	2054395	2054396	+	Intron	INS	-	TTAC	TTAC			2011-2330:2012-1337-T	g.chr1:2054395_2054396insTTAC	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron	NM_002744	NP_002735
KIF1B	23095	broad.mit.edu	37	1	10292360	10292361	+	5'UTR	DEL	AT	-	-			2011-2330:2012-1337-T	g.chr1:10292360_10292361delAT	uc001aqx.3	+	2					KIF1B_uc001aqv.3_5'UTR|KIF1B_uc001aqw.3_5'UTR|KIF1B_uc001aqy.2_5'UTR|KIF1B_uc001aqz.2_5'UTR|KIF1B_uc001ara.2_5'UTR|KIF1B_uc001arb.2_5'UTR|KIF1B_uc009vmt.2_RNA	NM_015074	NP_055889
PDE4DIP	9659	broad.mit.edu	37	1	144995278	144995278	+	5'Flank	DEL	G	-	-	rs11305863		2011-2330:2012-1337-T	g.chr1:144995278delG	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_5'Flank|PDE4DIP_uc001ell.1_5'Flank|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_5'Flank|PDE4DIP_uc001emd.1_5'Flank|PDE4DIP_uc001emg.1_5'Flank|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
PDE4DIP	9659	broad.mit.edu	37	1	144995542	144995542	+	5'Flank	DEL	C	-	-	rs60566131		2011-2330:2012-1337-T	g.chr1:144995542delC	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_5'Flank|PDE4DIP_uc001ell.1_5'Flank|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_5'Flank|PDE4DIP_uc001emd.1_5'Flank|PDE4DIP_uc001emg.1_5'Flank|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
PDE4DIP	9659	broad.mit.edu	37	1	144997337	144997337	+	5'Flank	DEL	G	-	-			2011-2330:2012-1337-T	g.chr1:144997337delG	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_5'Flank|PDE4DIP_uc001ell.1_5'Flank|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_5'Flank|PDE4DIP_uc001emd.1_5'Flank|PDE4DIP_uc001emg.1_5'Flank|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
C10orf90	118611	broad.mit.edu	37	10	128190673	128190674	+	Intron	DEL	CA	-	-			2011-2330:2012-1337-T	g.chr10:128190673_128190674delCA	uc001ljq.2	-						C10orf90_uc001ljp.2_Intron|C10orf90_uc010qum.1_Intron|C10orf90_uc009yao.2_Intron	NM_001004298	NP_001004298
ODF3	113746	broad.mit.edu	37	11	196429	196430	+	5'Flank	INS	-	A	A			2011-2330:2012-1337-T	g.chr11:196429_196430insA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
RNH1	6050	broad.mit.edu	37	11	497211	497212	+	Intron	INS	-	CACA	CACA	rs146656956	by1000genomes	2011-2330:2012-1337-T	g.chr11:497211_497212insCACA	uc001lpk.1	-						RNH1_uc001lpl.1_Intron|RNH1_uc001lpm.1_Intron|RNH1_uc001lpn.1_Intron|RNH1_uc001lpo.1_Intron|RNH1_uc009ybw.1_Intron|RNH1_uc001lpp.1_Intron|RNH1_uc001lpt.1_Intron|RNH1_uc001lpq.1_Intron|RNH1_uc001lpr.1_Intron|RNH1_uc001lps.1_Intron	NM_203389	NP_976323
MUC5B	727897	broad.mit.edu	37	11	1153226	1153226	+	Intron	DEL	T	-	-			2011-2330:2012-1337-T	g.chr11:1153226delT	uc009ycr.1	+							NM_017511	NP_059981
MYO7A	4647	broad.mit.edu	37	11	76904299	76904301	+	Intron	DEL	TGG	-	-			2011-2330:2012-1337-T	g.chr11:76904299_76904301delTGG	uc001oyb.2	+						MYO7A_uc010rsm.1_Intron|MYO7A_uc001oyc.2_Intron|MYO7A_uc009yus.1_Intron|MYO7A_uc009yut.1_Intron	NM_000260	NP_000251
ST8SIA1	6489	broad.mit.edu	37	12	22473901	22473902	+	Intron	INS	-	A	A			2011-2330:2012-1337-T	g.chr12:22473901_22473902insA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
ST8SIA1	6489	broad.mit.edu	37	12	22473905	22473906	+	Intron	INS	-	A	A			2011-2330:2012-1337-T	g.chr12:22473905_22473906insA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
ST8SIA1	6489	broad.mit.edu	37	12	22473909	22473910	+	Intron	INS	-	A	A			2011-2330:2012-1337-T	g.chr12:22473909_22473910insA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
MTUS2	23281	broad.mit.edu	37	13	30065765	30065766	+	Intron	INS	-	T	T			2011-2330:2012-1337-T	g.chr13:30065765_30065766insT	uc001usl.3	+						MTUS2_uc001usm.3_Intron|MTUS2_uc010aau.2_Intron	NM_001033602	NP_001028774
RASA3	22821	broad.mit.edu	37	13	114794221	114794222	+	Intron	INS	-	G	G			2011-2330:2012-1337-T	g.chr13:114794221_114794222insG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron|RASA3_uc010aha.1_Intron	NM_007368	NP_031394
INF2	64423	broad.mit.edu	37	14	105187436	105187437	+	Intron	INS	-	C	C			2011-2330:2012-1337-T	g.chr14:105187436_105187437insC	uc010tyi.1	+							NM_022489	NP_071934
BRF1	2972	broad.mit.edu	37	14	105682212	105682213	+	Intron	DEL	CG	-	-	rs7155574		2011-2330:2012-1337-T	g.chr14:105682212_105682213delCG	uc001yqp.2	-						BRF1_uc010tyo.1_Intron|BRF1_uc010typ.1_Intron|BRF1_uc001yqk.2_Intron|BRF1_uc001yql.2_Intron|BRF1_uc001yqo.2_Intron|BRF1_uc010axg.1_Intron|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron|BRF1_uc010axi.1_Intron	NM_001519	NP_001510
SRL	6345	broad.mit.edu	37	16	4261525	4261526	+	Intron	INS	-	GAT	GAT	rs61123886		2011-2330:2012-1337-T	g.chr16:4261525_4261526insGAT	uc002cvz.3	-						SRL_uc002cvy.3_Intron	NM_001098814	NP_001092284
KIAA1468	57614	broad.mit.edu	37	18	59894429	59894429	+	Intron	DEL	A	-	-	rs35190394		2011-2330:2012-1337-T	g.chr18:59894429delA	uc002lil.2	+						KIAA1468_uc002lik.1_Intron|KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
MIER2	54531	broad.mit.edu	37	19	309786	309787	+	Intron	DEL	AC	-	-			2011-2330:2012-1337-T	g.chr19:309786_309787delAC	uc002lok.1	-							NM_017550	NP_060020
LMNB2	84823	broad.mit.edu	37	19	2453086	2453086	+	Intron	DEL	A	-	-	rs115470424	by1000genomes	2011-2330:2012-1337-T	g.chr19:2453086delA	uc002lvy.2	-						LMNB2_uc002lwa.1_Intron	NM_032737	NP_116126
NLRP4	147945	broad.mit.edu	37	19	56348142	56348143	+	5'UTR	INS	-	TT	TT	rs144237697;rs35397971	by1000genomes	2011-2330:2012-1337-T	g.chr19:56348142_56348143insTT	uc002qmd.3	+	1					NLRP11_uc010ygf.1_5'Flank|NLRP11_uc002qmc.2_5'Flank|NLRP11_uc010ete.1_5'Flank	NM_134444	NP_604393
ZNF787	126208	broad.mit.edu	37	19	56603311	56603312	+	Intron	INS	-	AACGG	AACGG	rs62122406		2011-2330:2012-1337-T	g.chr19:56603311_56603312insAACGG	uc010eth.1	-							NM_001002836	NP_001002836
SNTG2	54221	broad.mit.edu	37	2	1284975	1284976	+	Intron	INS	-	G	G			2011-2330:2012-1337-T	g.chr2:1284975_1284976insG	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
SNTG2	54221	broad.mit.edu	37	2	1284980	1284981	+	Intron	INS	-	T	T			2011-2330:2012-1337-T	g.chr2:1284980_1284981insT	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
SNTG2	54221	broad.mit.edu	37	2	1284985	1284986	+	Intron	INS	-	CT	CT			2011-2330:2012-1337-T	g.chr2:1284985_1284986insCT	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
SNTG2	54221	broad.mit.edu	37	2	1284994	1284995	+	Intron	INS	-	G	G			2011-2330:2012-1337-T	g.chr2:1284994_1284995insG	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
PXDN	7837	broad.mit.edu	37	2	1707041	1707042	+	Intron	INS	-	A	A			2011-2330:2012-1337-T	g.chr2:1707041_1707042insA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87643656	87643659	+	Intron	DEL	CAGT	-	-			2011-2330:2012-1337-T	g.chr2:87643656_87643659delCAGT	uc002srs.3	+								
AGXT	189	broad.mit.edu	37	2	241811775	241811777	+	Intron	DEL	GGC	-	-	rs67019338		2011-2330:2012-1337-T	g.chr2:241811775_241811777delGGC	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
FARP2	9855	broad.mit.edu	37	2	242432789	242432790	+	Frame_Shift_Del	DEL	TA	-	-			2011-2330:2012-1337-T	g.chr2:242432789_242432790delTA	uc002wbi.1	+	26	3094_3095	c.2977_2978delTA	c.(2977-2979)TATfs	p.Y993fs		NM_014808	NP_055623
LAMA5	3911	broad.mit.edu	37	20	60889015	60889016	+	Intron	INS	-	GA	GA			2011-2330:2012-1337-T	g.chr20:60889015_60889016insGA	uc002ycq.2	-							NM_005560	NP_005551
SEZ6L	23544	broad.mit.edu	37	22	26723642	26723643	+	Intron	INS	-	AA	AA			2011-2330:2012-1337-T	g.chr22:26723642_26723643insAA	uc003acb.2	+						SEZ6L_uc003acc.2_Intron|SEZ6L_uc011akc.1_Intron|SEZ6L_uc003acd.2_Intron|SEZ6L_uc011akd.1_Intron|SEZ6L_uc003ace.2_Intron|SEZ6L_uc003acf.1_Intron|SEZ6L_uc010gvc.1_Intron	NM_021115	NP_066938
FAM19A5	25817	broad.mit.edu	37	22	48925479	48925480	+	Intron	INS	-	C	C			2011-2330:2012-1337-T	g.chr22:48925479_48925480insC	uc003bim.3	+							NM_001082967	NP_001076436
TTLL8	164714	broad.mit.edu	37	22	50467662	50467663	+	Intron	INS	-	C	C			2011-2330:2012-1337-T	g.chr22:50467662_50467663insC	uc011ark.1	-							NM_001080447	NP_001073916
RGS12	6002	broad.mit.edu	37	4	3364601	3364602	+	Intron	INS	-	GA	GA	rs78987284;rs35793370		2011-2330:2012-1337-T	g.chr4:3364601_3364602insGA	uc003ggw.2	+						RGS12_uc003ggu.2_Intron|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_Intron|RGS12_uc003ggv.2_Intron|RGS12_uc003ggy.1_Intron	NM_198229	NP_937872
CEP72	55722	broad.mit.edu	37	5	650518	650519	+	Intron	INS	-	G	G			2011-2330:2012-1337-T	g.chr5:650518_650519insG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1072619	1072619	+	Intron	DEL	C	-	-			2011-2330:2012-1337-T	g.chr5:1072619delC	uc003jbu.2	-							NM_006598	NP_006589
CTNND2	1501	broad.mit.edu	37	5	11182139	11182139	+	Intron	DEL	A	-	-			2011-2330:2012-1337-T	g.chr5:11182139delA	uc003jfa.1	-						CTNND2_uc010itt.2_Intron|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron|CTNND2_uc011cmx.1_Intron	NM_001332	NP_001323
CTNND2	1501	broad.mit.edu	37	5	11240220	11240221	+	Intron	DEL	AC	-	-			2011-2330:2012-1337-T	g.chr5:11240220_11240221delAC	uc003jfa.1	-						CTNND2_uc010itt.2_Intron|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_Intron|CTNND2_uc010itu.1_Intron|CTNND2_uc011cmx.1_Intron	NM_001332	NP_001323
PIK3R1	5295	broad.mit.edu	37	5	67594400	67594400	+	3'UTR	DEL	A	-	-			2011-2330:2012-1337-T	g.chr5:67594400delA	uc003jva.2	+	16					PIK3R1_uc003jvb.2_3'UTR|PIK3R1_uc003jvc.2_3'UTR|PIK3R1_uc003jvd.2_3'UTR|PIK3R1_uc003jve.2_3'UTR	NM_181523	NP_852664
HLA-B	3106	broad.mit.edu	37	6	31324430	31324431	+	Intron	INS	-	GGG	GGG	rs41541612		2011-2330:2012-1337-T	g.chr6:31324430_31324431insGGG	uc003nth.2	-						HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_5'UTR|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_5'Flank|HLA-B_uc010jso.2_Intron	NM_005514	NP_005505
RPS6KA2	6196	broad.mit.edu	37	6	166995598	166995598	+	Intron	DEL	G	-	-			2011-2330:2012-1337-T	g.chr6:166995598delG	uc003qvb.1	-						RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
FRMD1	79981	broad.mit.edu	37	6	168459022	168459022	+	Intron	DEL	G	-	-	rs67381566		2011-2330:2012-1337-T	g.chr6:168459022delG	uc003qwo.3	-						FRMD1_uc003qwm.3_Intron|FRMD1_uc011egs.1_Intron|FRMD1_uc011egt.1_Intron|FRMD1_uc003qwn.3_Intron	NM_024919	NP_079195
SMOC2	64094	broad.mit.edu	37	6	169015395	169015395	+	Intron	DEL	T	-	-	rs68108420		2011-2330:2012-1337-T	g.chr6:169015395delT	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169015398	169015398	+	Intron	DEL	A	-	-	rs67612893		2011-2330:2012-1337-T	g.chr6:169015398delA	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
ADAP1	11033	broad.mit.edu	37	7	945930	945931	+	Intron	INS	-	A	A			2011-2330:2012-1337-T	g.chr7:945930_945931insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	157863286	157863287	+	Intron	INS	-	G	G			2011-2330:2012-1337-T	g.chr7:157863286_157863287insG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157981137	157981138	+	Intron	INS	-	G	G			2011-2330:2012-1337-T	g.chr7:157981137_157981138insG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158316507	158316508	+	Intron	INS	-	GTC	GTC			2011-2330:2012-1337-T	g.chr7:158316507_158316508insGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1781170	1781171	+	Intron	DEL	GC	-	-	rs116073128	by1000genomes	2011-2330:2012-1337-T	g.chr8:1781170_1781171delGC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
ARHGEF10	9639	broad.mit.edu	37	8	1781190	1781193	+	Intron	DEL	AGAC	-	-			2011-2330:2012-1337-T	g.chr8:1781190_1781193delAGAC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
KIAA0146	23514	broad.mit.edu	37	8	48676498	48676499	+	Intron	INS	-	T	T			2011-2330:2012-1337-T	g.chr8:48676498_48676499insT	uc003xqg.1	+								
KIAA0146	23514	broad.mit.edu	37	8	48676502	48676503	+	Intron	INS	-	GGC	GGC			2011-2330:2012-1337-T	g.chr8:48676502_48676503insGGC	uc003xqg.1	+								
UBR5	51366	broad.mit.edu	37	8	103425386	103425387	+	5'Flank	INS	-	G	G	rs143650408;rs57619376	by1000genomes	2011-2330:2012-1337-T	g.chr8:103425386_103425387insG	uc003ykr.1	-						UBR5_uc003yks.1_5'Flank	NM_015902	NP_056986
SAMD12	401474	broad.mit.edu	37	8	119346102	119346103	+	Intron	DEL	TG	-	-			2011-2330:2012-1337-T	g.chr8:119346102_119346103delTG	uc010mda.1	-						SAMD12_uc010mdb.1_Intron	NM_001101676	NP_001095146
HEATR7A	727957	broad.mit.edu	37	8	145288321	145288322	+	Intron	INS	-	C	C	rs138280914		2011-2330:2012-1337-T	g.chr8:145288321_145288322insC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
HEATR7A	727957	broad.mit.edu	37	8	145288431	145288432	+	Intron	INS	-	C	C	rs11435979;rs66838432		2011-2330:2012-1337-T	g.chr8:145288431_145288432insC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
NUP214	8021	broad.mit.edu	37	9	134000768	134000768	+	5'Flank	DEL	T	-	-	rs3215836		2011-2330:2012-1337-T	g.chr9:134000768delT	uc004cag.2	+						NUP214_uc004cah.2_5'Flank|NUP214_uc004caf.1_5'Flank	NM_005085	NP_005076
HSFX2	100130086	broad.mit.edu	37	X	148687186	148687189	+	Intron	DEL	CTTT	-	-			2011-2330:2012-1337-T	g.chrX:148687186_148687189delCTTT	uc004fdl.2	-						HSFX1_uc004fdm.2_Intron|TMEM185A_uc011mxp.1_Intron|TMEM185A_uc004fdo.2_Intron|TMEM185A_uc011mxq.1_Intron|TMEM185A_uc004fdp.3_Intron	NM_016153	NP_057237
PRDM16	63976	broad.mit.edu	37	1	3031189	3031190	+	Intron	INS	-	AC	AC	rs142682550;rs139562904	by1000genomes	2011-2331:2012-1338-T	g.chr1:3031189_3031190insAC	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
GLIS1	148979	broad.mit.edu	37	1	54021772	54021773	+	Intron	DEL	GT	-	-			2011-2331:2012-1338-T	g.chr1:54021772_54021773delGT	uc001cvr.1	-							NM_147193	NP_671726
SIPA1L2	57568	broad.mit.edu	37	1	232551618	232551619	+	Intron	INS	-	AGTC	AGTC			2011-2331:2012-1338-T	g.chr1:232551618_232551619insAGTC	uc001hvg.2	-						SIPA1L2_uc001hvf.2_Intron	NM_020808	NP_065859
PPP2R2D	55844	broad.mit.edu	37	10	133766277	133766278	+	Intron	INS	-	AGC	AGC			2011-2331:2012-1338-T	g.chr10:133766277_133766278insAGC	uc001lks.2	+						PPP2R2D_uc001lkr.2_Intron|PPP2R2D_uc001lkt.2_Intron|PPP2R2D_uc009yay.2_Intron	NM_018461	NP_060931
ODF3	113746	broad.mit.edu	37	11	196480	196481	+	5'Flank	INS	-	A	A	rs77218836		2011-2331:2012-1338-T	g.chr11:196480_196481insA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
ODF3	113746	broad.mit.edu	37	11	196520	196521	+	5'Flank	INS	-	A	A			2011-2331:2012-1338-T	g.chr11:196520_196521insA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
IGF2	3481	broad.mit.edu	37	11	2152727	2152727	+	3'UTR	DEL	C	-	-			2011-2331:2012-1338-T	g.chr11:2152727delC	uc009yde.2	-	4					IGF2_uc001lvf.2_RNA|IGF2_uc001lvg.2_3'UTR|IGF2_uc009ydf.2_3'UTR|IGF2_uc001lvh.2_3'UTR|INS-IGF2_uc001lvi.2_RNA	NM_001007139	NP_001007140
IGF2	3481	broad.mit.edu	37	11	2152745	2152746	+	3'UTR	DEL	TA	-	-			2011-2331:2012-1338-T	g.chr11:2152745_2152746delTA	uc009yde.2	-	4					IGF2_uc001lvf.2_RNA|IGF2_uc001lvg.2_3'UTR|IGF2_uc009ydf.2_3'UTR|IGF2_uc001lvh.2_3'UTR|INS-IGF2_uc001lvi.2_RNA	NM_001007139	NP_001007140
KCNC1	3746	broad.mit.edu	37	11	17785583	17785584	+	Intron	DEL	CA	-	-			2011-2331:2012-1338-T	g.chr11:17785583_17785584delCA	uc001mnk.3	+						KCNC1_uc009yhc.1_Intron	NM_004976	NP_004967
MYO1H	283446	broad.mit.edu	37	12	109880919	109880920	+	Intron	INS	-	TA	TA	rs141189944;rs72295978	by1000genomes	2011-2331:2012-1338-T	g.chr12:109880919_109880920insTA	uc010sxo.1	+						MYO1H_uc010sxn.1_Intron		
NCOR2	9612	broad.mit.edu	37	12	124916052	124916055	+	Intron	DEL	ACAT	-	-			2011-2331:2012-1338-T	g.chr12:124916052_124916055delACAT	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
TMEM132D	121256	broad.mit.edu	37	12	130340000	130340000	+	Intron	DEL	G	-	-	rs67064875		2011-2331:2012-1338-T	g.chr12:130340000delG	uc009zyl.1	-							NM_133448	NP_597705
ATP12A	479	broad.mit.edu	37	13	25256540	25256541	+	Intron	DEL	TG	-	-			2011-2331:2012-1338-T	g.chr13:25256540_25256541delTG	uc001upp.2	+						ATP12A_uc010aaa.2_Intron	NM_001676	NP_001667
CUL4A	8451	broad.mit.edu	37	13	113917337	113917339	+	Intron	DEL	GTC	-	-			2011-2331:2012-1338-T	g.chr13:113917337_113917339delGTC	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc010tjz.1_Intron	NM_001008895	NP_001008895
TFDP1	7027	broad.mit.edu	37	13	114243020	114243022	+	Intron	DEL	GTG	-	-	rs72324177		2011-2331:2012-1338-T	g.chr13:114243020_114243022delGTG	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
GRK1	6011	broad.mit.edu	37	13	114430666	114430667	+	Intron	INS	-	AGT	AGT			2011-2331:2012-1338-T	g.chr13:114430666_114430667insAGT	uc010tkf.1	+							NM_002929	NP_002920
INF2	64423	broad.mit.edu	37	14	105187090	105187091	+	Intron	INS	-	C	C			2011-2331:2012-1338-T	g.chr14:105187090_105187091insC	uc010tyi.1	+							NM_022489	NP_071934
AGBL1	123624	broad.mit.edu	37	15	87360878	87360879	+	Intron	DEL	AG	-	-	rs71408862		2011-2331:2012-1338-T	g.chr15:87360878_87360879delAG	uc002blz.1	+							NM_152336	NP_689549
LMF1	64788	broad.mit.edu	37	16	1001068	1001069	+	Intron	INS	-	AAT	AAT	rs71960492		2011-2331:2012-1338-T	g.chr16:1001068_1001069insAAT	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1001122	1001123	+	Intron	DEL	AG	-	-			2011-2331:2012-1338-T	g.chr16:1001122_1001123delAG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
ARHGAP17	55114	broad.mit.edu	37	16	25029262	25029262	+	5'Flank	DEL	T	-	-	rs79150258		2011-2331:2012-1338-T	g.chr16:25029262delT	uc002dnb.2	-						ARHGAP17_uc002dnc.2_5'Flank|ARHGAP17_uc010vcf.1_5'Flank|ARHGAP17_uc002dng.1_5'Flank	NM_001006634	NP_001006635
NXN	64359	broad.mit.edu	37	17	797062	797062	+	Intron	DEL	T	-	-			2011-2331:2012-1338-T	g.chr17:797062delT	uc002fsa.2	-						NXN_uc002fsb.1_Intron	NM_022463	NP_071908
ST8SIA5	29906	broad.mit.edu	37	18	44337563	44337563	+	5'Flank	DEL	C	-	-	rs142771383		2011-2331:2012-1338-T	g.chr18:44337563delC	uc002lcj.1	-						ST8SIA5_uc010xcy.1_5'Flank|ST8SIA5_uc010xcz.1_5'Flank|ST8SIA5_uc010dno.1_5'Flank	NM_013305	NP_037437
ZNF516	9658	broad.mit.edu	37	18	74136620	74136621	+	Intron	DEL	AT	-	-			2011-2331:2012-1338-T	g.chr18:74136620_74136621delAT	uc010dqx.1	-						ZNF516_uc002lme.2_Intron	NM_014643	NP_055458
ZNF236	7776	broad.mit.edu	37	18	74679557	74679558	+	Intron	INS	-	GGT	GGT	rs113352608		2011-2331:2012-1338-T	g.chr18:74679557_74679558insGGT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
PQLC1	80148	broad.mit.edu	37	18	77680200	77680200	+	Intron	DEL	A	-	-	rs10711980		2011-2331:2012-1338-T	g.chr18:77680200delA	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
GNG7	2788	broad.mit.edu	37	19	2576029	2576030	+	Intron	INS	-	GAAC	GAAC	rs138030482	by1000genomes	2011-2331:2012-1338-T	g.chr19:2576029_2576030insGAAC	uc002lwd.2	-							NM_052847	NP_443079
ZNF554	115196	broad.mit.edu	37	19	2818547	2818548	+	5'Flank	INS	-	C	C			2011-2331:2012-1338-T	g.chr19:2818547_2818548insC	uc002lwm.2	+						ZNF554_uc002lwl.2_5'Flank	NM_001102651	NP_001096121
ZFR2	23217	broad.mit.edu	37	19	3820979	3820979	+	Intron	DEL	G	-	-			2011-2331:2012-1338-T	g.chr19:3820979delG	uc002lyw.2	-							NM_015174	NP_055989
C3	718	broad.mit.edu	37	19	6717656	6717657	+	Intron	DEL	TG	-	-	rs147541551		2011-2331:2012-1338-T	g.chr19:6717656_6717657delTG	uc002mfm.2	-							NM_000064	NP_000055
CACNG7	59284	broad.mit.edu	37	19	54427248	54427248	+	Intron	DEL	C	-	-			2011-2331:2012-1338-T	g.chr19:54427248delC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
MYT1L	23040	broad.mit.edu	37	2	1969003	1969004	+	Intron	DEL	GC	-	-	rs149817539		2011-2331:2012-1338-T	g.chr2:1969003_1969004delGC	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
CPSF3	51692	broad.mit.edu	37	2	9606310	9606311	+	Intron	DEL	CA	-	-	rs35125531		2011-2331:2012-1338-T	g.chr2:9606310_9606311delCA	uc002qzo.1	+						CPSF3_uc002qzp.1_Intron|CPSF3_uc002qzq.1_Intron	NM_016207	NP_057291
VPS24	51652	broad.mit.edu	37	2	86777501	86777502	+	Intron	INS	-	AAG	AAG			2011-2331:2012-1338-T	g.chr2:86777501_86777502insAAG	uc002srj.2	-						VPS24_uc002srk.2_Intron|VPS24_uc002srl.2_Intron|VPS24_uc010ytl.1_Intron	NM_016079	NP_057163
STAT1	6772	broad.mit.edu	37	2	191875369	191875370	+	Intron	DEL	TC	-	-	rs75760962;rs151254208		2011-2331:2012-1338-T	g.chr2:191875369_191875370delTC	uc002usj.2	-						STAT1_uc010fse.1_Intron|STAT1_uc002usk.2_Intron|STAT1_uc002usl.2_Intron|STAT1_uc010fsf.1_Intron	NM_007315	NP_009330
RAMP1	10267	broad.mit.edu	37	2	238819026	238819027	+	Intron	DEL	CA	-	-	rs72032256		2011-2331:2012-1338-T	g.chr2:238819026_238819027delCA	uc002vxj.2	+							NM_005855	NP_005846
ESPNL	339768	broad.mit.edu	37	2	239035231	239035232	+	Intron	DEL	TG	-	-			2011-2331:2012-1338-T	g.chr2:239035231_239035232delTG	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
HDAC4	9759	broad.mit.edu	37	2	240297900	240297901	+	Intron	INS	-	CAC	CAC			2011-2331:2012-1338-T	g.chr2:240297900_240297901insCAC	uc002vyk.3	-						HDAC4_uc010fza.2_Intron	NM_006037	NP_006028
TSHZ2	128553	broad.mit.edu	37	20	51624276	51624277	+	Intron	INS	-	GT	GT	rs149853842	by1000genomes	2011-2331:2012-1338-T	g.chr20:51624276_51624277insGT	uc002xwo.2	+							NM_173485	NP_775756
LAMA5	3911	broad.mit.edu	37	20	60888969	60888970	+	Intron	DEL	GT	-	-			2011-2331:2012-1338-T	g.chr20:60888969_60888970delGT	uc002ycq.2	-							NM_005560	NP_005551
COL18A1	80781	broad.mit.edu	37	21	46904211	46904212	+	Intron	DEL	CA	-	-	rs72303199		2011-2331:2012-1338-T	g.chr21:46904211_46904212delCA	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron	NM_130444	NP_569711
TP63	8626	broad.mit.edu	37	3	189348969	189348973	+	5'Flank	DEL	CTCCA	-	-	rs76937731		2011-2331:2012-1338-T	g.chr3:189348969_189348973delCTCCA	uc003fry.2	+						TP63_uc003frx.2_5'Flank|TP63_uc003frz.2_5'Flank|TP63_uc010hzc.1_5'Flank	NM_003722	NP_003713
LAP3	51056	broad.mit.edu	37	4	17578813	17578814	+	5'Flank	INS	-	AA	AA			2011-2331:2012-1338-T	g.chr4:17578813_17578814insAA	uc003gph.1	+						LAP3_uc010ieg.2_5'Flank	NM_015907	NP_056991
POU4F2	5458	broad.mit.edu	37	4	147561259	147561261	+	In_Frame_Del	DEL	CAC	-	-			2011-2331:2012-1338-T	g.chr4:147561259_147561261delCAC	uc003ikv.2	+	2	777_779	c.529_531delCAC	c.(529-531)CACdel	p.H182del		NM_004575	NP_004566
SLC6A18	348932	broad.mit.edu	37	5	1238493	1238494	+	Intron	INS	-	A	A			2011-2331:2012-1338-T	g.chr5:1238493_1238494insA	uc003jby.1	+							NM_182632	NP_872438
SLC6A3	6531	broad.mit.edu	37	5	1422676	1422677	+	Intron	DEL	CA	-	-	rs67718451		2011-2331:2012-1338-T	g.chr5:1422676_1422677delCA	uc003jck.2	-							NM_001044	NP_001035
SYNE1	23345	broad.mit.edu	37	6	152557633	152557634	+	Intron	INS	-	T	T	rs147792371	by1000genomes	2011-2331:2012-1338-T	g.chr6:152557633_152557634insT	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169015398	169015398	+	Intron	DEL	A	-	-	rs67612893		2011-2331:2012-1338-T	g.chr6:169015398delA	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_5'Flank	NM_022138	NP_071421
ADAP1	11033	broad.mit.edu	37	7	945360	945361	+	Intron	INS	-	A	A	rs147722082	by1000genomes	2011-2331:2012-1338-T	g.chr7:945360_945361insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf23	79161	broad.mit.edu	37	7	86838982	86838983	+	Intron	INS	-	AGAC	AGAC	rs149690626	by1000genomes	2011-2331:2012-1338-T	g.chr7:86838982_86838983insAGAC	uc003uio.2	-							NM_024315	NP_077291
PRKAG2	51422	broad.mit.edu	37	7	151367092	151367093	+	Intron	INS	-	CA	CA			2011-2331:2012-1338-T	g.chr7:151367092_151367093insCA	uc003wkk.2	-						PRKAG2_uc011kvl.1_Intron|PRKAG2_uc003wkj.2_Intron|PRKAG2_uc010lqe.1_Intron	NM_016203	NP_057287
PTPRN2	5799	broad.mit.edu	37	7	157524256	157524256	+	Intron	DEL	C	-	-			2011-2331:2012-1338-T	g.chr7:157524256delC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158112108	158112109	+	Intron	INS	-	CCC	CCC			2011-2331:2012-1338-T	g.chr7:158112108_158112109insCCC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
DLGAP2	9228	broad.mit.edu	37	8	1509883	1509883	+	Intron	DEL	G	-	-			2011-2331:2012-1338-T	g.chr8:1509883delG	uc003wpl.2	+						DLGAP2_uc003wpm.2_Intron	NM_004745	NP_004736
TOP1MT	116447	broad.mit.edu	37	8	144404893	144404894	+	Intron	DEL	AG	-	-			2011-2331:2012-1338-T	g.chr8:144404893_144404894delAG	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TTF1	7270	broad.mit.edu	37	9	135252856	135252859	+	Intron	DEL	GTGT	-	-			2011-2331:2012-1338-T	g.chr9:135252856_135252859delGTGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
AGRN	375790	broad.mit.edu	37	1	965839	965840	+	Intron	DEL	AT	-	-			2011-2333:2012-309-T	g.chr1:965839_965840delAT	uc001ack.1	+							NM_198576	NP_940978
CAMTA1	23261	broad.mit.edu	37	1	6997792	6997793	+	Intron	INS	-	C	C			2011-2333:2012-309-T	g.chr1:6997792_6997793insC	uc001aoi.2	+							NM_015215	NP_056030
CAMTA1	23261	broad.mit.edu	37	1	6997794	6997795	+	Intron	INS	-	TCATCACT	TCATCACT			2011-2333:2012-309-T	g.chr1:6997794_6997795insTCATCACT	uc001aoi.2	+							NM_015215	NP_056030
PARG	8505	broad.mit.edu	37	10	51502339	51502340	+	Intron	INS	-	TG	TG			2011-2333:2012-309-T	g.chr10:51502339_51502340insTG	uc001jih.2	-						uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_003631	NP_003622
STK32C	282974	broad.mit.edu	37	10	134078678	134078679	+	Intron	INS	-	G	G	rs143806390	by1000genomes	2011-2333:2012-309-T	g.chr10:134078678_134078679insG	uc001lle.1	-						STK32C_uc001lld.1_Intron|STK32C_uc010quu.1_Intron|STK32C_uc009ybc.1_Intron|STK32C_uc009ybd.1_Intron	NM_173575	NP_775846
TSPAN4	7106	broad.mit.edu	37	11	859466	859467	+	Intron	DEL	GG	-	-	rs72313612		2011-2333:2012-309-T	g.chr11:859466_859467delGG	uc001lsd.1	+						TSPAN4_uc001lse.1_Intron|TSPAN4_uc001lsf.1_Intron|TSPAN4_uc001lsg.1_Intron|TSPAN4_uc001lsh.1_Intron|TSPAN4_uc001lsi.1_Intron|TSPAN4_uc001lsj.1_Intron|uc001lsk.1_5'Flank	NM_003271	NP_003262
SERGEF	26297	broad.mit.edu	37	11	17918410	17918411	+	Intron	INS	-	T	T			2011-2333:2012-309-T	g.chr11:17918410_17918411insT	uc001mnm.2	-						SERGEF_uc009yhd.2_Intron|SERGEF_uc001mnn.2_Intron|SERGEF_uc010rcz.1_Intron	NM_012139	NP_036271
TP53I11	9537	broad.mit.edu	37	11	44963981	44963984	+	Intron	DEL	ACAC	-	-	rs111417341		2011-2333:2012-309-T	g.chr11:44963981_44963984delACAC	uc001myi.2	-						TP53I11_uc001myf.1_Intron|TP53I11_uc001myj.2_Intron|TP53I11_uc001myk.2_Intron|TP53I11_uc001myl.2_Intron|TP53I11_uc001mym.2_Intron	NM_006034	NP_006025
PZP	5858	broad.mit.edu	37	12	9313510	9313511	+	Intron	INS	-	A	A			2011-2333:2012-309-T	g.chr12:9313510_9313511insA	uc001qvl.2	-						PZP_uc009zgl.2_Intron|PZP_uc010sgo.1_Intron	NM_002864	NP_002855
NCOR2	9612	broad.mit.edu	37	12	124916419	124916420	+	Intron	DEL	AC	-	-			2011-2333:2012-309-T	g.chr12:124916419_124916420delAC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
NCOR2	9612	broad.mit.edu	37	12	124923627	124923628	+	Intron	INS	-	G	G	rs117780864		2011-2333:2012-309-T	g.chr12:124923627_124923628insG	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
NCOR2	9612	broad.mit.edu	37	12	124923628	124923629	+	Intron	INS	-	GAG	GAG	rs117780864		2011-2333:2012-309-T	g.chr12:124923628_124923629insGAG	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
ZDHHC20	253832	broad.mit.edu	37	13	21951790	21951791	+	Intron	DEL	CT	-	-			2011-2333:2012-309-T	g.chr13:21951790_21951791delCT	uc001uob.2	-						ZDHHC20_uc001uod.2_Intron|ZDHHC20_uc001uoc.2_Intron|ZDHHC20_uc001uoe.2_Intron|ZDHHC20_uc010tcs.1_Intron	NM_153251	NP_694983
KIAA1024	23251	broad.mit.edu	37	15	79744967	79744968	+	Intron	INS	-	GTCT	GTCT	rs147936332	by1000genomes	2011-2333:2012-309-T	g.chr15:79744967_79744968insGTCT	uc002bew.1	+							NM_015206	NP_056021
MFGE8	4240	broad.mit.edu	37	15	89444235	89444236	+	Intron	DEL	CA	-	-	rs112640512		2011-2333:2012-309-T	g.chr15:89444235_89444236delCA	uc002bng.3	-						MFGE8_uc002bnf.3_Intron|MFGE8_uc002bnh.3_Intron|MFGE8_uc010bnn.2_Intron|MFGE8_uc010upq.1_Intron|MFGE8_uc010upr.1_Intron	NM_005928	NP_005919
LRRK1	79705	broad.mit.edu	37	15	101481314	101481315	+	Intron	DEL	TG	-	-			2011-2333:2012-309-T	g.chr15:101481314_101481315delTG	uc002bwr.2	+						LRRK1_uc010usb.1_Intron|LRRK1_uc010usc.1_Intron|LRRK1_uc002bwq.1_Intron	NM_024652	NP_078928
TP53	7157	broad.mit.edu	37	17	7577058	7577058	+	Frame_Shift_Del	DEL	C	-	-			2011-2333:2012-309-T	g.chr17:7577058delC	uc002gim.2	-	8	1074	c.880delG	c.(880-882)GAGfs	p.E294fs	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Frame_Shift_Del_p.E294fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.E162fs|TP53_uc010cng.1_Frame_Shift_Del_p.E162fs|TP53_uc002gii.1_Frame_Shift_Del_p.E162fs|TP53_uc010cnh.1_Frame_Shift_Del_p.E294fs|TP53_uc010cni.1_Frame_Shift_Del_p.E294fs|TP53_uc002gij.2_Frame_Shift_Del_p.E294fs	NM_001126112	NP_001119584
THRA	7067	broad.mit.edu	37	17	38243562	38243563	+	Intron	DEL	AC	-	-			2011-2333:2012-309-T	g.chr17:38243562_38243563delAC	uc002htw.2	+						THRA_uc010cwp.1_Intron|THRA_uc002htv.2_Intron|THRA_uc002htx.2_Intron	NM_003250	NP_003241
B3GNTL1	146712	broad.mit.edu	37	17	80929913	80929913	+	Intron	DEL	C	-	-	rs10710274		2011-2333:2012-309-T	g.chr17:80929913delC	uc002kgg.1	-						B3GNTL1_uc002kgf.1_Intron|B3GNTL1_uc002kge.1_Intron	NM_001009905	NP_001009905
PQLC1	80148	broad.mit.edu	37	18	77681831	77681831	+	Intron	DEL	A	-	-	rs142134730	by1000genomes	2011-2333:2012-309-T	g.chr18:77681831delA	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
SBNO2	22904	broad.mit.edu	37	19	1164603	1164605	+	Intron	DEL	AGG	-	-			2011-2333:2012-309-T	g.chr19:1164603_1164605delAGG	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
PPP1R12C	54776	broad.mit.edu	37	19	55608246	55608247	+	Intron	INS	-	T	T	rs36197554		2011-2333:2012-309-T	g.chr19:55608246_55608247insT	uc002qix.2	-						PPP1R12C_uc010yfs.1_Intron|PPP1R12C_uc002qiy.2_Intron	NM_017607	NP_060077
SNTG2	54221	broad.mit.edu	37	2	1285325	1285326	+	Intron	DEL	GT	-	-			2011-2333:2012-309-T	g.chr2:1285325_1285326delGT	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
RMND5A	64795	broad.mit.edu	37	2	87643658	87643660	+	Intron	DEL	GTC	-	-			2011-2333:2012-309-T	g.chr2:87643658_87643660delGTC	uc002srs.3	+								
SRC	6714	broad.mit.edu	37	20	35990230	35990237	+	Intron	DEL	GTAGAGAT	-	-	rs112316453;rs66592675		2011-2333:2012-309-T	g.chr20:35990230_35990237delGTAGAGAT	uc002xgx.2	+						SRC_uc002xgy.2_Intron	NM_005417	NP_005408
FAM19A5	25817	broad.mit.edu	37	22	48938485	48938489	+	Intron	DEL	ATGTT	-	-			2011-2333:2012-309-T	g.chr22:48938485_48938489delATGTT	uc003bim.3	+							NM_001082967	NP_001076436
FAM19A5	25817	broad.mit.edu	37	22	48938495	48938496	+	Intron	INS	-	AT	AT			2011-2333:2012-309-T	g.chr22:48938495_48938496insAT	uc003bim.3	+							NM_001082967	NP_001076436
BBX	56987	broad.mit.edu	37	3	107242066	107242068	+	Intron	DEL	GCG	-	-	rs63194160		2011-2333:2012-309-T	g.chr3:107242066_107242068delGCG	uc010hpr.2	+						BBX_uc003dwk.3_Intron|BBX_uc003dwl.3_Intron	NM_001142568	NP_001136040
TNK2	10188	broad.mit.edu	37	3	195597917	195597918	+	Intron	INS	-	G	G			2011-2333:2012-309-T	g.chr3:195597917_195597918insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
SLC12A7	10723	broad.mit.edu	37	5	1070447	1070447	+	Intron	DEL	G	-	-			2011-2333:2012-309-T	g.chr5:1070447delG	uc003jbu.2	-							NM_006598	NP_006589
SYNJ2	8871	broad.mit.edu	37	6	158441373	158441374	+	Intron	DEL	AC	-	-			2011-2333:2012-309-T	g.chr6:158441373_158441374delAC	uc003qqx.1	+						SYNJ2_uc011efm.1_Intron|SYNJ2_uc003qqw.1_Intron|SYNJ2_uc003qqy.1_Intron|SYNJ2_uc011efn.1_Intron|SYNJ2_uc010kjo.1_Intron	NM_003898	NP_003889
PLXNA4	91584	broad.mit.edu	37	7	132247127	132247129	+	Intron	DEL	CCT	-	-			2011-2333:2012-309-T	g.chr7:132247127_132247129delCCT	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
FAM167A	83648	broad.mit.edu	37	8	11313145	11313146	+	Intron	INS	-	GTGT	GTGT	rs150606798	by1000genomes	2011-2333:2012-309-T	g.chr8:11313145_11313146insGTGT	uc003wtw.2	-							NM_053279	NP_444509
GRHL2	79977	broad.mit.edu	37	8	102664588	102664589	+	Intron	INS	-	G	G			2011-2333:2012-309-T	g.chr8:102664588_102664589insG	uc010mbu.2	+							NM_024915	NP_079191
COL22A1	169044	broad.mit.edu	37	8	139818435	139818436	+	Intron	INS	-	CA	CA			2011-2333:2012-309-T	g.chr8:139818435_139818436insCA	uc003yvd.2	-							NM_152888	NP_690848
ARHGAP39	80728	broad.mit.edu	37	8	145913107	145913108	+	5'Flank	INS	-	C	C			2011-2333:2012-309-T	g.chr8:145913107_145913108insC	uc011llk.1	-							NM_025251	NP_079527
TRPM3	80036	broad.mit.edu	37	9	73946788	73946788	+	Intron	DEL	A	-	-			2011-2333:2012-309-T	g.chr9:73946788delA	uc004aii.2	-							NM_206948	NP_996831
RALGDS	5900	broad.mit.edu	37	9	135999375	135999376	+	5'Flank	DEL	AC	-	-			2011-2333:2012-309-T	g.chr9:135999375_135999376delAC	uc004cco.2	-						RALGDS_uc004ccp.2_5'Flank|RALGDS_uc004ccq.2_5'Flank|RALGDS_uc004ccr.2_Intron|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Intron|RALGDS_uc011mcw.1_Intron	NM_006266	NP_006257
RXRA	6256	broad.mit.edu	37	9	137231361	137231362	+	Intron	INS	-	TG	TG	rs140582836	by1000genomes	2011-2333:2012-309-T	g.chr9:137231361_137231362insTG	uc004cfb.2	+						RXRA_uc004cfa.1_Intron	NM_002957	NP_002948
OLFM1	10439	broad.mit.edu	37	9	137983546	137983547	+	Intron	DEL	GT	-	-			2011-2333:2012-309-T	g.chr9:137983546_137983547delGT	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
EXD3	54932	broad.mit.edu	37	9	140249895	140249895	+	Intron	DEL	G	-	-			2011-2333:2012-309-T	g.chr9:140249895delG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
SHOX	6473	broad.mit.edu	37	X	583479	583480	+	5'Flank	INS	-	C	C			2011-2333:2012-309-T	g.chrX:583479_583480insC	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
CSF2RA	1438	broad.mit.edu	37	X	1408581	1408582	+	Intron	INS	-	TTTTG	TTTTG			2011-2333:2012-309-T	g.chrX:1408581_1408582insTTTTG	uc010nct.2	+						CSF2RA_uc011mhb.1_Intron|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Intron|CSF2RA_uc004cpo.2_Intron|CSF2RA_uc010ncu.2_Intron|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_Intron|CSF2RA_uc004cpr.2_Intron	NM_001161529	NP_001155001
NKAP	79576	broad.mit.edu	37	X	119068419	119068419	+	Intron	DEL	G	-	-			2011-2333:2012-309-T	g.chrX:119068419delG	uc004esh.2	-						NKAP_uc004esg.2_Intron	NM_024528	NP_078804
AGRN	375790	broad.mit.edu	37	1	965420	965421	+	Intron	INS	-	TGG	TGG			2011-2334:2012-1339-T	g.chr1:965420_965421insTGG	uc001ack.1	+							NM_198576	NP_940978
MEGF6	1953	broad.mit.edu	37	1	3488848	3488849	+	Intron	INS	-	T	T			2011-2334:2012-1339-T	g.chr1:3488848_3488849insT	uc001akl.2	-							NM_001409	NP_001400
CASZ1	54897	broad.mit.edu	37	1	10760050	10760051	+	Intron	DEL	AG	-	-			2011-2334:2012-1339-T	g.chr1:10760050_10760051delAG	uc001aro.2	-						CASZ1_uc001arp.1_Intron	NM_001079843	NP_001073312
CASZ1	54897	broad.mit.edu	37	1	10804785	10804788	+	Intron	DEL	GGGC	-	-	rs148489185		2011-2334:2012-1339-T	g.chr1:10804785_10804788delGGGC	uc001aro.2	-						CASZ1_uc001arp.1_Intron	NM_001079843	NP_001073312
DHRS3	9249	broad.mit.edu	37	1	12645412	12645413	+	Intron	DEL	TG	-	-	rs113806651		2011-2334:2012-1339-T	g.chr1:12645412_12645413delTG	uc001auc.2	-						DHRS3_uc001aub.2_Intron|DHRS3_uc009vnm.2_Intron|DHRS3_uc001aud.3_Intron|DHRS3_uc001aue.1_Intron	NM_004753	NP_004744
MFSD2A	84879	broad.mit.edu	37	1	40430434	40430435	+	Intron	DEL	GT	-	-			2011-2334:2012-1339-T	g.chr1:40430434_40430435delGT	uc001cev.2	+						MFSD2A_uc010ojb.1_Intron|MFSD2A_uc001ceu.2_Intron|MFSD2A_uc010ojc.1_Intron|MFSD2A_uc009vvy.2_Intron|MFSD2A_uc001cex.2_5'Flank	NM_001136493	NP_001129965
NOS1AP	9722	broad.mit.edu	37	1	162332218	162332225	+	Intron	DEL	GTGACAGA	-	-	rs11277545;rs60162928		2011-2334:2012-1339-T	g.chr1:162332218_162332225delGTGACAGA	uc001gbv.2	+						NOS1AP_uc010pks.1_Intron|NOS1AP_uc001gbw.2_Intron|NOS1AP_uc009wut.1_5'Flank	NM_014697	NP_055512
CD247	919	broad.mit.edu	37	1	167404307	167404307	+	Intron	DEL	T	-	-			2011-2334:2012-1339-T	g.chr1:167404307delT	uc001gei.3	-						CD247_uc001gej.3_Intron	NM_198053	NP_932170
LGR6	59352	broad.mit.edu	37	1	202173499	202173501	+	Intron	DEL	CCT	-	-			2011-2334:2012-1339-T	g.chr1:202173499_202173501delCCT	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174104	202174105	+	Intron	INS	-	AC	AC			2011-2334:2012-1339-T	g.chr1:202174104_202174105insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
WNT9A	7483	broad.mit.edu	37	1	228122741	228122742	+	Intron	DEL	AG	-	-	rs68033125		2011-2334:2012-1339-T	g.chr1:228122741_228122742delAG	uc001hri.2	-							NM_003395	NP_003386
DISC1	27185	broad.mit.edu	37	1	232173718	232173721	+	3'UTR	DEL	AGTA	-	-	rs71927075;rs71162209		2011-2334:2012-1339-T	g.chr1:232173718_232173721delAGTA	uc001huz.2	+	13					DISC1_uc001hva.2_3'UTR	NM_018662	NP_061132
FMN2	56776	broad.mit.edu	37	1	240348361	240348362	+	Intron	INS	-	C	C	rs71646823	by1000genomes	2011-2334:2012-1339-T	g.chr1:240348361_240348362insC	uc010pyd.1	+						FMN2_uc010pye.1_Intron	NM_020066	NP_064450
DIP2C	22982	broad.mit.edu	37	10	578482	578483	+	Intron	INS	-	GA	GA	rs149618724;rs34964227		2011-2334:2012-1339-T	g.chr10:578482_578483insGA	uc001ifp.2	-							NM_014974	NP_055789
DIP2C	22982	broad.mit.edu	37	10	578609	578610	+	Intron	DEL	GA	-	-	rs10546313;rs12770984		2011-2334:2012-1339-T	g.chr10:578609_578610delGA	uc001ifp.2	-							NM_014974	NP_055789
ITIH5	80760	broad.mit.edu	37	10	7670630	7670631	+	Intron	DEL	AT	-	-			2011-2334:2012-1339-T	g.chr10:7670630_7670631delAT	uc001ijq.2	-						ITIH5_uc001ijr.1_Intron	NM_030569	NP_085046
PCDH15	65217	broad.mit.edu	37	10	56561382	56561385	+	5'Flank	DEL	TCTC	-	-			2011-2334:2012-1339-T	g.chr10:56561382_56561385delTCTC	uc001jju.1	-						PCDH15_uc010qhq.1_5'Flank|PCDH15_uc010qhr.1_5'Flank|PCDH15_uc010qhs.1_5'Flank|PCDH15_uc010qht.1_5'Flank|PCDH15_uc010qhu.1_5'Flank|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_5'Flank|PCDH15_uc010qhw.1_5'Flank|PCDH15_uc010qhx.1_5'Flank|PCDH15_uc010qhy.1_5'Flank|PCDH15_uc010qhz.1_5'Flank|PCDH15_uc010qia.1_5'Flank|PCDH15_uc010qib.1_5'Flank|PCDH15_uc001jjw.2_5'Flank	NM_033056	NP_149045
MAT1A	4143	broad.mit.edu	37	10	82039540	82039541	+	Intron	INS	-	AG	AG			2011-2334:2012-1339-T	g.chr10:82039540_82039541insAG	uc001kbw.2	-							NM_000429	NP_000420
MAT1A	4143	broad.mit.edu	37	10	82039574	82039575	+	Intron	DEL	AC	-	-	rs144636836	by1000genomes	2011-2334:2012-1339-T	g.chr10:82039574_82039575delAC	uc001kbw.2	-							NM_000429	NP_000420
PTEN	5728	broad.mit.edu	37	10	89626375	89626376	+	Intron	INS	-	C	C	rs142681768;rs66749138	by1000genomes	2011-2334:2012-1339-T	g.chr10:89626375_89626376insC	uc001kfb.2	+							NM_000314	NP_000305
GPR123	84435	broad.mit.edu	37	10	134892065	134892068	+	Intron	DEL	GTGT	-	-			2011-2334:2012-1339-T	g.chr10:134892065_134892068delGTGT	uc001llw.2	+								
KNDC1	85442	broad.mit.edu	37	10	135037438	135037439	+	Intron	INS	-	AT	AT			2011-2334:2012-1339-T	g.chr10:135037438_135037439insAT	uc001llz.1	+							NM_152643	NP_689856
CALY	50632	broad.mit.edu	37	10	135152138	135152139	+	5'Flank	DEL	AC	-	-			2011-2334:2012-1339-T	g.chr10:135152138_135152139delAC	uc001lmo.2	-							NM_015722	NP_056537
SWAP70	23075	broad.mit.edu	37	11	9726930	9726931	+	Intron	INS	-	T	T			2011-2334:2012-1339-T	g.chr11:9726930_9726931insT	uc001mhw.2	+						SWAP70_uc001mhv.2_Intron|SWAP70_uc001mhx.2_Intron	NM_015055	NP_055870
CD248	57124	broad.mit.edu	37	11	66083171	66083173	+	In_Frame_Del	DEL	GAG	-	-			2011-2334:2012-1339-T	g.chr11:66083171_66083173delGAG	uc001ohm.1	-	1	1343_1345	c.1326_1328delCTC	c.(1324-1329)TCCTCA>TCA	p.442_443SS>S		NM_020404	NP_065137
SHANK2	22941	broad.mit.edu	37	11	70633288	70633290	+	Intron	DEL	CAA	-	-			2011-2334:2012-1339-T	g.chr11:70633288_70633290delCAA	uc001oqc.2	-							NM_012309	NP_036441
SHANK2	22941	broad.mit.edu	37	11	70668939	70668940	+	Intron	INS	-	G	G	rs145988984;rs11237614	by1000genomes	2011-2334:2012-1339-T	g.chr11:70668939_70668940insG	uc001oqc.2	-							NM_012309	NP_036441
IGSF9B	22997	broad.mit.edu	37	11	133802469	133802470	+	Intron	DEL	AG	-	-			2011-2334:2012-1339-T	g.chr11:133802469_133802470delAG	uc001qgx.3	-						IGSF9B_uc001qgy.1_Intron	NM_014987	NP_055802
TSPAN9	10867	broad.mit.edu	37	12	3307313	3307313	+	Intron	DEL	C	-	-			2011-2334:2012-1339-T	g.chr12:3307313delC	uc001qlp.2	+							NM_006675	NP_006666
NCOR2	9612	broad.mit.edu	37	12	124953129	124953129	+	Intron	DEL	C	-	-			2011-2334:2012-1339-T	g.chr12:124953129delC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
TMEM132B	114795	broad.mit.edu	37	12	125895381	125895385	+	Intron	DEL	GAGTG	-	-			2011-2334:2012-1339-T	g.chr12:125895381_125895385delGAGTG	uc001uhe.1	+							NM_052907	NP_443139
PXMP2	5827	broad.mit.edu	37	12	133269279	133269280	+	Intron	INS	-	A	A			2011-2334:2012-1339-T	g.chr12:133269279_133269280insA	uc001ukt.2	+						PGAM5_uc010tbr.1_Intron	NM_018663	NP_061133
IL17D	53342	broad.mit.edu	37	13	21292810	21292813	+	Intron	DEL	CACA	-	-			2011-2334:2012-1339-T	g.chr13:21292810_21292813delCACA	uc001unm.2	+							NM_138284	NP_612141
SLC7A1	6541	broad.mit.edu	37	13	30133609	30133609	+	Intron	DEL	G	-	-	rs71090264		2011-2334:2012-1339-T	g.chr13:30133609delG	uc001uso.2	-							NM_003045	NP_003036
MCF2L	23263	broad.mit.edu	37	13	113711948	113711951	+	Intron	DEL	TGTT	-	-	rs72314585;rs142792025		2011-2334:2012-1339-T	g.chr13:113711948_113711951delTGTT	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron|MCF2L_uc001vst.1_Intron	NM_001112732	NP_001106203
CUL4A	8451	broad.mit.edu	37	13	113869506	113869525	+	Intron	DEL	TATGGAGGTCTGTGTGGGAG	-	-	rs67096412;rs72109483		2011-2334:2012-1339-T	g.chr13:113869506_113869525delTATGGAGGTCTGTGTGGGAG	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc001vth.2_Intron|CUL4A_uc001vtj.2_Intron	NM_001008895	NP_001008895
FAM70B	348013	broad.mit.edu	37	13	114477559	114477561	+	Intron	DEL	CAC	-	-			2011-2334:2012-1339-T	g.chr13:114477559_114477561delCAC	uc001vuh.2	+							NM_182614	NP_872420
FAM70B	348013	broad.mit.edu	37	13	114498511	114498512	+	Intron	DEL	CA	-	-	rs72378730		2011-2334:2012-1339-T	g.chr13:114498511_114498512delCA	uc001vuh.2	+							NM_182614	NP_872420
RASA3	22821	broad.mit.edu	37	13	114873718	114873719	+	Intron	DEL	AT	-	-	rs74218188		2011-2334:2012-1339-T	g.chr13:114873718_114873719delAT	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
SYNE2	23224	broad.mit.edu	37	14	64566455	64566455	+	Intron	DEL	T	-	-			2011-2334:2012-1339-T	g.chr14:64566455delT	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron|SYNE2_uc010apy.2_Intron|SYNE2_uc010apx.1_3'UTR|SYNE2_uc010apz.1_Intron	NM_015180	NP_055995
KIF26A	26153	broad.mit.edu	37	14	104631685	104631686	+	Intron	DEL	AT	-	-	rs149291675		2011-2334:2012-1339-T	g.chr14:104631685_104631686delAT	uc001yos.3	+							NM_015656	NP_056471
BRF1	2972	broad.mit.edu	37	14	105680884	105680885	+	Intron	DEL	CT	-	-	rs34491320		2011-2334:2012-1339-T	g.chr14:105680884_105680885delCT	uc001yqp.2	-						BRF1_uc010tyo.1_Intron|BRF1_uc010typ.1_Intron|BRF1_uc001yqk.2_Intron|BRF1_uc001yql.2_Intron|BRF1_uc001yqo.2_Intron|BRF1_uc010axg.1_Intron|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron|BRF1_uc010axi.1_Intron	NM_001519	NP_001510
RORA	6095	broad.mit.edu	37	15	60834810	60834811	+	Intron	INS	-	CA	CA			2011-2334:2012-1339-T	g.chr15:60834810_60834811insCA	uc002agv.2	-						RORA_uc002agt.3_Intron|RORA_uc002agw.2_Intron|RORA_uc002agx.2_Intron	NM_134260	NP_599022
POLG	5428	broad.mit.edu	37	15	89868484	89868485	+	Intron	INS	-	GT	GT			2011-2334:2012-1339-T	g.chr15:89868484_89868485insGT	uc002bns.3	-						POLG_uc002bnr.3_Intron	NM_002693	NP_002684
LMF1	64788	broad.mit.edu	37	16	908566	908567	+	Intron	INS	-	C	C			2011-2334:2012-1339-T	g.chr16:908566_908567insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000029	1000030	+	Intron	DEL	CC	-	-			2011-2334:2012-1339-T	g.chr16:1000029_1000030delCC	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000031	1000032	+	Intron	INS	-	G	G			2011-2334:2012-1339-T	g.chr16:1000031_1000032insG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000752	1000753	+	Intron	DEL	AG	-	-			2011-2334:2012-1339-T	g.chr16:1000752_1000753delAG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	1000816	1000817	+	Intron	INS	-	AG	AG			2011-2334:2012-1339-T	g.chr16:1000816_1000817insAG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
MAPK8IP3	23162	broad.mit.edu	37	16	1788649	1788652	+	Intron	DEL	GTGA	-	-			2011-2334:2012-1339-T	g.chr16:1788649_1788652delGTGA	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
CMIP	80790	broad.mit.edu	37	16	81702929	81702929	+	Intron	DEL	A	-	-			2011-2334:2012-1339-T	g.chr16:81702929delA	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
CMIP	80790	broad.mit.edu	37	16	81702931	81702932	+	Intron	INS	-	C	C			2011-2334:2012-1339-T	g.chr16:81702931_81702932insC	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
CMIP	80790	broad.mit.edu	37	16	81702934	81702935	+	Intron	DEL	AT	-	-			2011-2334:2012-1339-T	g.chr16:81702934_81702935delAT	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
HSDL1	83693	broad.mit.edu	37	16	84158602	84158603	+	Intron	INS	-	A	A	rs145393542;rs11384792	by1000genomes	2011-2334:2012-1339-T	g.chr16:84158602_84158603insA	uc002fhk.2	-						HSDL1_uc010vnv.1_Intron	NM_031463	NP_113651
ANKRD11	29123	broad.mit.edu	37	16	89372532	89372533	+	Intron	INS	-	CG	CG			2011-2334:2012-1339-T	g.chr16:89372532_89372533insCG	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_Intron|ANKRD11_uc002fnf.1_Intron	NM_013275	NP_037407
SPG7	6687	broad.mit.edu	37	16	89602663	89602664	+	Intron	INS	-	CT	CT			2011-2334:2012-1339-T	g.chr16:89602663_89602664insCT	uc002fnj.2	+						SPG7_uc002fni.2_Intron	NM_003119	NP_003110
CPNE7	27132	broad.mit.edu	37	16	89654562	89654563	+	Intron	INS	-	C	C			2011-2334:2012-1339-T	g.chr16:89654562_89654563insC	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
ABR	29	broad.mit.edu	37	17	1046165	1046165	+	Intron	DEL	A	-	-			2011-2334:2012-1339-T	g.chr17:1046165delA	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
ABR	29	broad.mit.edu	37	17	1046168	1046169	+	Intron	INS	-	C	C			2011-2334:2012-1339-T	g.chr17:1046168_1046169insC	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
PITPNM3	83394	broad.mit.edu	37	17	6356321	6356322	+	3'UTR	DEL	TT	-	-	rs74390995		2011-2334:2012-1339-T	g.chr17:6356321_6356322delTT	uc002gdd.3	-	20					PITPNM3_uc010cln.2_3'UTR|PITPNM3_uc010clm.2_3'UTR|PITPNM3_uc002gdc.3_3'UTR	NM_031220	NP_112497
DNAH2	146754	broad.mit.edu	37	17	7718955	7718956	+	Intron	DEL	CA	-	-			2011-2334:2012-1339-T	g.chr17:7718955_7718956delCA	uc002giu.1	+						DNAH2_uc010cnm.1_Intron	NM_020877	NP_065928
GAS7	8522	broad.mit.edu	37	17	9863149	9863150	+	Intron	INS	-	TA	TA	rs143303360	by1000genomes	2011-2334:2012-1339-T	g.chr17:9863149_9863150insTA	uc002gmg.1	-						GAS7_uc010vvc.1_5'Flank|GAS7_uc002gmh.1_5'Flank|GAS7_uc010vvd.1_Intron|GAS7_uc002gmi.2_Intron|GAS7_uc002gmj.1_Intron|GAS7_uc010coh.1_Intron	NM_201433	NP_958839
C17orf76	388341	broad.mit.edu	37	17	16359634	16359636	+	Intron	DEL	AGA	-	-	rs62076299		2011-2334:2012-1339-T	g.chr17:16359634_16359636delAGA	uc010cph.1	-						C17orf76_uc002gqh.2_Intron|NCRNA00188_uc010vwl.1_Intron|NCRNA00188_uc010vwm.1_Intron|NCRNA00188_uc010vwn.1_Intron|NCRNA00188_uc010cpe.2_Intron|NCRNA00188_uc010vwo.1_Intron|NCRNA00188_uc010vwp.1_Intron	NM_001113567	NP_001107039
CPD	1362	broad.mit.edu	37	17	28728448	28728450	+	Intron	DEL	TCT	-	-			2011-2334:2012-1339-T	g.chr17:28728448_28728450delTCT	uc002hfb.1	+						CPD_uc010wbo.1_Intron|CPD_uc010wbp.1_Intron	NM_001304	NP_001295
THRA	7067	broad.mit.edu	37	17	38243498	38243499	+	Intron	DEL	CA	-	-			2011-2334:2012-1339-T	g.chr17:38243498_38243499delCA	uc002htw.2	+						THRA_uc010cwp.1_Intron|THRA_uc002htv.2_Intron|THRA_uc002htx.2_Intron	NM_003250	NP_003241
KRTAP4-3	85290	broad.mit.edu	37	17	39324139	39324140	+	In_Frame_Ins	INS	-	GCAGCAGGTGGTCAG	GCAGCAGGTGGTCAG	rs12603046		2011-2334:2012-1339-T	g.chr17:39324139_39324140insGCAGCAGGTGGTCAG	uc010cxl.2	-	1	285_286	c.285_286insCTGACCACCTGCTGC	c.(283-288)insCTGACCACCTGCTGC	p.95_96insLTTCC		NM_033187	NP_149443
C17orf67	339210	broad.mit.edu	37	17	54869877	54869879	+	Intron	DEL	GTG	-	-	rs111716809		2011-2334:2012-1339-T	g.chr17:54869877_54869879delGTG	uc010dci.2	-						C17orf67_uc002iuq.2_Intron	NM_001085430	NP_001078899
PRCD	768206	broad.mit.edu	37	17	74522921	74522921	+	5'Flank	DEL	C	-	-			2011-2334:2012-1339-T	g.chr17:74522921delC	uc002jrw.1	+								
RPTOR	57521	broad.mit.edu	37	17	78608293	78608294	+	Intron	DEL	TG	-	-			2011-2334:2012-1339-T	g.chr17:78608293_78608294delTG	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78904213	78904218	+	Intron	DEL	CTCATC	-	-			2011-2334:2012-1339-T	g.chr17:78904213_78904218delCTCATC	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
BAIAP2	10458	broad.mit.edu	37	17	79078883	79078884	+	Intron	INS	-	C	C			2011-2334:2012-1339-T	g.chr17:79078883_79078884insC	uc002jzg.2	+						BAIAP2_uc002jyz.3_Intron|BAIAP2_uc002jza.2_Intron|BAIAP2_uc002jzc.2_Intron|BAIAP2_uc002jzb.2_Intron|BAIAP2_uc002jzd.2_Intron|BAIAP2_uc002jzf.2_Intron|BAIAP2_uc002jze.2_Intron|BAIAP2_uc010wuh.1_Intron|BAIAP2_uc002jzh.2_Intron|BAIAP2_uc010wui.1_Intron	NM_017451	NP_059345
AATK	9625	broad.mit.edu	37	17	79114705	79114705	+	Intron	DEL	G	-	-			2011-2334:2012-1339-T	g.chr17:79114705delG	uc010dia.2	-							NM_001080395	NP_001073864
SLC38A10	124565	broad.mit.edu	37	17	79223284	79223286	+	Intron	DEL	AGA	-	-	rs111298840		2011-2334:2012-1339-T	g.chr17:79223284_79223286delAGA	uc002jzz.1	-						SLC38A10_uc002jzy.1_Intron	NM_001037984	NP_001033073
SLC38A10	124565	broad.mit.edu	37	17	79223306	79223308	+	Intron	DEL	GGA	-	-			2011-2334:2012-1339-T	g.chr17:79223306_79223308delGGA	uc002jzz.1	-						SLC38A10_uc002jzy.1_Intron	NM_001037984	NP_001033073
WDR45L	56270	broad.mit.edu	37	17	80607086	80607087	+	5'Flank	INS	-	C	C	rs146677536	by1000genomes	2011-2334:2012-1339-T	g.chr17:80607086_80607087insC	uc002kfq.2	-						WDR45L_uc002kfr.2_5'Flank	NM_019613	NP_062559
ST8SIA5	29906	broad.mit.edu	37	18	44337563	44337563	+	5'Flank	DEL	C	-	-	rs142771383		2011-2334:2012-1339-T	g.chr18:44337563delC	uc002lcj.1	-						ST8SIA5_uc010xcy.1_5'Flank|ST8SIA5_uc010xcz.1_5'Flank|ST8SIA5_uc010dno.1_5'Flank	NM_013305	NP_037437
BCL2	596	broad.mit.edu	37	18	60865751	60865752	+	Intron	DEL	AT	-	-			2011-2334:2012-1339-T	g.chr18:60865751_60865752delAT	uc002lit.1	-						BCL2_uc002liu.1_Intron	NM_000633	NP_000624
GALR1	2587	broad.mit.edu	37	18	74971193	74971195	+	Intron	DEL	TGG	-	-			2011-2334:2012-1339-T	g.chr18:74971193_74971195delTGG	uc002lms.3	+							NM_001480	NP_001471
SPPL2B	56928	broad.mit.edu	37	19	2321098	2321098	+	Intron	DEL	C	-	-	rs112045905		2011-2334:2012-1339-T	g.chr19:2321098delC	uc010dsw.1	+								
ZNF554	115196	broad.mit.edu	37	19	2818461	2818462	+	5'Flank	INS	-	C	C			2011-2334:2012-1339-T	g.chr19:2818461_2818462insC	uc002lwm.2	+						ZNF554_uc002lwl.2_5'Flank	NM_001102651	NP_001096121
SIN3B	23309	broad.mit.edu	37	19	16985993	16985997	+	Intron	DEL	TGGTC	-	-			2011-2334:2012-1339-T	g.chr19:16985993_16985997delTGGTC	uc002ney.1	+						SIN3B_uc002nez.1_Intron|SIN3B_uc010xpi.1_Intron|SIN3B_uc010eaj.1_5'Flank	NM_015260	NP_056075
BCAM	4059	broad.mit.edu	37	19	45323171	45323187	+	Intron	DEL	CATCCCCAACTCATCCT	-	-	rs3842409;rs28399634;rs146786717;rs141192403		2011-2334:2012-1339-T	g.chr19:45323171_45323187delCATCCCCAACTCATCCT	uc002ozu.2	+						BCAM_uc002ozt.1_3'UTR	NM_005581	NP_005572
ZNF480	147657	broad.mit.edu	37	19	52799936	52799937	+	5'Flank	INS	-	TTT	TTT	rs141668077;rs67651075	by1000genomes	2011-2334:2012-1339-T	g.chr19:52799936_52799937insTTT	uc010ydl.1	+						ZNF480_uc002pyv.2_5'Flank|ZNF480_uc010ydm.1_5'Flank|ZNF480_uc010epn.2_5'Flank	NM_144684	NP_653285
SH3YL1	26751	broad.mit.edu	37	2	235515	235516	+	Intron	INS	-	GCA	GCA			2011-2334:2012-1339-T	g.chr2:235515_235516insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
PXDN	7837	broad.mit.edu	37	2	1683594	1683595	+	Intron	DEL	GT	-	-			2011-2334:2012-1339-T	g.chr2:1683594_1683595delGT	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
PXDN	7837	broad.mit.edu	37	2	1714358	1714359	+	Intron	INS	-	CA	CA			2011-2334:2012-1339-T	g.chr2:1714358_1714359insCA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
PXDN	7837	broad.mit.edu	37	2	1715435	1715436	+	Intron	DEL	CT	-	-			2011-2334:2012-1339-T	g.chr2:1715435_1715436delCT	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87646079	87646079	+	Intron	DEL	G	-	-			2011-2334:2012-1339-T	g.chr2:87646079delG	uc002srs.3	+								
SPAG16	79582	broad.mit.edu	37	2	214272618	214272621	+	Intron	DEL	AGAC	-	-	rs138394422		2011-2334:2012-1339-T	g.chr2:214272618_214272621delAGAC	uc002veq.2	+						SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Intron|SPAG16_uc010zjk.1_Intron	NM_024532	NP_078808
TNS1	7145	broad.mit.edu	37	2	218670201	218670202	+	Intron	INS	-	AG	AG			2011-2334:2012-1339-T	g.chr2:218670201_218670202insAG	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
TNS1	7145	broad.mit.edu	37	2	218670204	218670205	+	Intron	INS	-	TAC	TAC			2011-2334:2012-1339-T	g.chr2:218670204_218670205insTAC	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
TNS1	7145	broad.mit.edu	37	2	218670220	218670221	+	Intron	INS	-	T	T	rs149530430	by1000genomes	2011-2334:2012-1339-T	g.chr2:218670220_218670221insT	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
TNS1	7145	broad.mit.edu	37	2	218670230	218670231	+	Intron	INS	-	TACG	TACG			2011-2334:2012-1339-T	g.chr2:218670230_218670231insTACG	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
CUL3	8452	broad.mit.edu	37	2	225449973	225449974	+	5'UTR	INS	-	G	G			2011-2334:2012-1339-T	g.chr2:225449973_225449974insG	uc002vny.2	-	1					CUL3_uc010zls.1_5'UTR	NM_003590	NP_003581
AGAP1	116987	broad.mit.edu	37	2	236696514	236696529	+	Intron	DEL	GAGCGTTCTAGACCAT	-	-	rs71873895;rs58336875;rs139665255		2011-2334:2012-1339-T	g.chr2:236696514_236696529delGAGCGTTCTAGACCAT	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
DLGAP4	22839	broad.mit.edu	37	20	34948535	34948536	+	Intron	INS	-	GCA	GCA			2011-2334:2012-1339-T	g.chr20:34948535_34948536insGCA	uc002xff.2	+							NM_014902	NP_055717
DLGAP4	22839	broad.mit.edu	37	20	34948540	34948542	+	Intron	DEL	TCT	-	-			2011-2334:2012-1339-T	g.chr20:34948540_34948542delTCT	uc002xff.2	+							NM_014902	NP_055717
SRC	6714	broad.mit.edu	37	20	35990266	35990273	+	Intron	DEL	GTAGAGAT	-	-	rs72271164		2011-2334:2012-1339-T	g.chr20:35990266_35990273delGTAGAGAT	uc002xgx.2	+						SRC_uc002xgy.2_Intron	NM_005417	NP_005408
JPH2	57158	broad.mit.edu	37	20	42817151	42817152	+	5'Flank	INS	-	AG	AG	rs141192855;rs150775922	by1000genomes	2011-2334:2012-1339-T	g.chr20:42817151_42817152insAG	uc002xli.1	-						JPH2_uc002xlj.2_5'Flank	NM_020433	NP_065166
CDH4	1002	broad.mit.edu	37	20	60261508	60261509	+	Intron	INS	-	GT	GT	rs144237468;rs66506740	by1000genomes	2011-2334:2012-1339-T	g.chr20:60261508_60261509insGT	uc002ybn.1	+						CDH4_uc002ybo.1_Intron|CDH4_uc002ybp.1_Intron	NM_001794	NP_001785
CDH4	1002	broad.mit.edu	37	20	60433233	60433234	+	Intron	INS	-	TGTC	TGTC	rs145658938	by1000genomes	2011-2334:2012-1339-T	g.chr20:60433233_60433234insTGTC	uc002ybn.1	+						CDH4_uc002ybp.1_Intron	NM_001794	NP_001785
OSBPL2	9885	broad.mit.edu	37	20	60845553	60845553	+	Intron	DEL	T	-	-			2011-2334:2012-1339-T	g.chr20:60845553delT	uc002yck.1	+						OSBPL2_uc002ycl.1_Intron|OSBPL2_uc011aah.1_Intron	NM_144498	NP_653081
CHRNA4	1137	broad.mit.edu	37	20	61988398	61988399	+	Intron	INS	-	T	T	rs59061351;rs13040031	by1000genomes	2011-2334:2012-1339-T	g.chr20:61988398_61988399insT	uc002yes.2	-						CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_Intron|CHRNA4_uc010gke.1_Intron|CHRNA4_uc002yev.1_Intron|CHRNA4_uc010gkf.1_Intron	NM_000744	NP_000735
MYT1	4661	broad.mit.edu	37	20	62833302	62833303	+	Intron	INS	-	C	C	rs140927466;rs67048052	by1000genomes	2011-2334:2012-1339-T	g.chr20:62833302_62833303insC	uc002yii.2	+						MYT1_uc002yih.2_Intron	NM_004535	NP_004526
MYT1	4661	broad.mit.edu	37	20	62833318	62833319	+	Intron	INS	-	T	T			2011-2334:2012-1339-T	g.chr20:62833318_62833319insT	uc002yii.2	+						MYT1_uc002yih.2_Intron	NM_004535	NP_004526
BAGE2	85319	broad.mit.edu	37	21	11058261	11058262	+	Frame_Shift_Ins	INS	-	T	T			2011-2334:2012-1339-T	g.chr21:11058261_11058262insT	uc002yit.1	-	3	386_387	c.178_179insA	c.(178-180)AGAfs	p.R60fs	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288
DSCAM	1826	broad.mit.edu	37	21	41559964	41559965	+	Intron	DEL	TT	-	-			2011-2334:2012-1339-T	g.chr21:41559964_41559965delTT	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
DSCAM	1826	broad.mit.edu	37	21	41658774	41658775	+	Intron	INS	-	A	A	rs62223768;rs62223769		2011-2334:2012-1339-T	g.chr21:41658774_41658775insA	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
TRPM2	7226	broad.mit.edu	37	21	45824711	45824713	+	Intron	DEL	TGA	-	-			2011-2334:2012-1339-T	g.chr21:45824711_45824713delTGA	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron	NM_003307	NP_003298
RANBP1	5902	broad.mit.edu	37	22	20110334	20110335	+	Intron	INS	-	TG	TG	rs147764446	by1000genomes	2011-2334:2012-1339-T	g.chr22:20110334_20110335insTG	uc002zro.1	+						RANBP1_uc011ahl.1_Intron|RANBP1_uc002zrp.2_Intron	NM_002882	NP_002873
RANBP1	5902	broad.mit.edu	37	22	20110770	20110771	+	Intron	INS	-	A	A	rs144916982	by1000genomes	2011-2334:2012-1339-T	g.chr22:20110770_20110771insA	uc002zro.1	+						RANBP1_uc011ahl.1_Intron|RANBP1_uc002zrp.2_Intron	NM_002882	NP_002873
RGL4	266747	broad.mit.edu	37	22	24037626	24037628	+	Intron	DEL	CTG	-	-	rs145103735;rs71200896		2011-2334:2012-1339-T	g.chr22:24037626_24037628delCTG	uc002zxn.2	+						LOC91316_uc002zxh.3_5'Flank|LOC91316_uc002zxi.3_5'Flank|LOC91316_uc002zxk.3_RNA|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_RNA|LOC91316_uc011aiz.1_RNA|LOC91316_uc002zxm.3_RNA|RGL4_uc002zxo.2_Intron|RGL4_uc002zxp.1_Intron|RGL4_uc002zxq.2_Intron	NM_153615	NP_705843
EP300	2033	broad.mit.edu	37	22	41546329	41546335	+	Intron	DEL	ATTTTTC	-	-	rs116424200	by1000genomes	2011-2334:2012-1339-T	g.chr22:41546329_41546335delATTTTTC	uc003azl.3	+							NM_001429	NP_001420
EP300	2033	broad.mit.edu	37	22	41568805	41568808	+	Intron	DEL	AGAG	-	-			2011-2334:2012-1339-T	g.chr22:41568805_41568808delAGAG	uc003azl.3	+							NM_001429	NP_001420
MPPED1	758	broad.mit.edu	37	22	43828603	43828604	+	Intron	DEL	GA	-	-			2011-2334:2012-1339-T	g.chr22:43828603_43828604delGA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45197183	45197184	+	Intron	INS	-	A	A	rs71188487		2011-2334:2012-1339-T	g.chr22:45197183_45197184insA	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
ARSA	410	broad.mit.edu	37	22	51067347	51067349	+	5'Flank	DEL	TGT	-	-	rs34043300;rs34618802;rs6151403		2011-2334:2012-1339-T	g.chr22:51067347_51067349delTGT	uc003bnb.3	-						ARSA_uc003bna.3_5'Flank|ARSA_uc003bnc.3_5'Flank|ARSA_uc003bnd.3_5'Flank|ARSA_uc003bmz.3_5'Flank|ARSA_uc010hbf.2_5'Flank	NM_001085426	NP_001078895
MAP3K13	9175	broad.mit.edu	37	3	185038832	185038833	+	Intron	INS	-	CA	CA	rs138406100;rs145843862	by1000genomes	2011-2334:2012-1339-T	g.chr3:185038832_185038833insCA	uc010hyf.2	+						MAP3K13_uc011brt.1_Intron	NM_004721	NP_004712
TP63	8626	broad.mit.edu	37	3	189348969	189348973	+	5'Flank	DEL	CTCCA	-	-	rs76937731		2011-2334:2012-1339-T	g.chr3:189348969_189348973delCTCCA	uc003fry.2	+						TP63_uc003frx.2_5'Flank|TP63_uc003frz.2_5'Flank|TP63_uc010hzc.1_5'Flank	NM_003722	NP_003713
TNK2	10188	broad.mit.edu	37	3	195597903	195597903	+	Intron	DEL	G	-	-	rs66630297		2011-2334:2012-1339-T	g.chr3:195597903delG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
TNK2	10188	broad.mit.edu	37	3	195597917	195597918	+	Intron	INS	-	G	G			2011-2334:2012-1339-T	g.chr3:195597917_195597918insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
KIAA1530	57654	broad.mit.edu	37	4	1366581	1366582	+	Intron	INS	-	AG	AG	rs5015163;rs78190252		2011-2334:2012-1339-T	g.chr4:1366581_1366582insAG	uc003gde.3	+						KIAA1530_uc010ibv.2_Intron	NM_020894	NP_065945
KIAA1530	57654	broad.mit.edu	37	4	1366648	1366649	+	Intron	INS	-	AG	AG	rs5015165;rs34115496		2011-2334:2012-1339-T	g.chr4:1366648_1366649insAG	uc003gde.3	+						KIAA1530_uc010ibv.2_Intron	NM_020894	NP_065945
FAM53A	152877	broad.mit.edu	37	4	1653956	1653957	+	Intron	INS	-	AC	AC	rs142090008		2011-2334:2012-1339-T	g.chr4:1653956_1653957insAC	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
FAM53A	152877	broad.mit.edu	37	4	1654822	1654823	+	Intron	DEL	CA	-	-			2011-2334:2012-1339-T	g.chr4:1654822_1654823delCA	uc011bve.1	-						FAM53A_uc010ibw.2_Intron	NM_001013622	NP_001013644
RGS12	6002	broad.mit.edu	37	4	3364206	3364209	+	Intron	DEL	TGTA	-	-			2011-2334:2012-1339-T	g.chr4:3364206_3364209delTGTA	uc003ggw.2	+						RGS12_uc003ggu.2_Intron|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_Intron|RGS12_uc003ggv.2_Intron|RGS12_uc003ggy.1_Intron	NM_198229	NP_937872
SH3TC1	54436	broad.mit.edu	37	4	8241032	8241037	+	Intron	DEL	ACACAG	-	-	rs10532430		2011-2334:2012-1339-T	g.chr4:8241032_8241037delACACAG	uc003gkv.3	+						SH3TC1_uc003gkw.3_Intron|SH3TC1_uc003gkx.3_Intron|SH3TC1_uc003gky.2_Intron	NM_018986	NP_061859
PDCD6	10016	broad.mit.edu	37	5	299083	299083	+	Intron	DEL	C	-	-			2011-2334:2012-1339-T	g.chr5:299083delC	uc003jat.1	+						PDCD6_uc003jau.1_Intron	NM_013232	NP_037364
CEP72	55722	broad.mit.edu	37	5	648910	648911	+	Intron	DEL	TG	-	-			2011-2334:2012-1339-T	g.chr5:648910_648911delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650057	650058	+	Intron	DEL	TG	-	-			2011-2334:2012-1339-T	g.chr5:650057_650058delTG	uc003jbf.2	+							NM_018140	NP_060610
SLC6A3	6531	broad.mit.edu	37	5	1422562	1422563	+	Intron	DEL	CA	-	-			2011-2334:2012-1339-T	g.chr5:1422562_1422563delCA	uc003jck.2	-							NM_001044	NP_001035
SLC6A3	6531	broad.mit.edu	37	5	1422676	1422677	+	Intron	DEL	CA	-	-	rs67718451		2011-2334:2012-1339-T	g.chr5:1422676_1422677delCA	uc003jck.2	-							NM_001044	NP_001035
DNAH5	1767	broad.mit.edu	37	5	13885412	13885415	+	Intron	DEL	AGAT	-	-			2011-2334:2012-1339-T	g.chr5:13885412_13885415delAGAT	uc003jfd.2	-							NM_001369	NP_001360
CDH12	1010	broad.mit.edu	37	5	22212770	22212782	+	Translation_Start_Site	DEL	TCAGCTGAAATCC	-	-			2011-2334:2012-1339-T	g.chr5:22212770_22212782delTCAGCTGAAATCC	uc010iuc.2	-	1	97_109	c.-361_-349delGGATTTCAGCTGA	c.(-363--347)GAGGATTTCAGCTGATG>GATG		CDH12_uc011cno.1_Intron|CDH12_uc003jgk.2_Intron	NM_004061	NP_004052
PIK3R1	5295	broad.mit.edu	37	5	67513448	67513449	+	Intron	INS	-	TG	TG	rs141591947;rs71676380	by1000genomes	2011-2334:2012-1339-T	g.chr5:67513448_67513449insTG	uc003jva.2	+							NM_181523	NP_852664
PIK3R1	5295	broad.mit.edu	37	5	67590798	67590802	+	Intron	DEL	AAAAT	-	-			2011-2334:2012-1339-T	g.chr5:67590798_67590802delAAAAT	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron|PIK3R1_uc003jvc.2_Intron|PIK3R1_uc003jvd.2_Intron|PIK3R1_uc003jve.2_Intron|PIK3R1_uc011crb.1_Intron	NM_181523	NP_852664
RASA1	5921	broad.mit.edu	37	5	86563775	86563776	+	5'Flank	INS	-	A	A	rs146732096;rs3840522	by1000genomes	2011-2334:2012-1339-T	g.chr5:86563775_86563776insA	uc003kiw.2	+						RASA1_uc010jav.2_5'Flank|RASA1_uc003kix.2_5'Flank|RASA1_uc011ctv.1_5'Flank|RASA1_uc011ctw.1_5'Flank|RASA1_uc010jaw.2_5'Flank|RASA1_uc011ctu.1_5'Flank	NM_002890	NP_002881
HMP19	51617	broad.mit.edu	37	5	173524561	173524562	+	Intron	DEL	TG	-	-			2011-2334:2012-1339-T	g.chr5:173524561_173524562delTG	uc003mcx.2	+						HMP19_uc011dfh.1_Intron	NM_015980	NP_057064
HMP19	51617	broad.mit.edu	37	5	173524585	173524586	+	Intron	DEL	TG	-	-			2011-2334:2012-1339-T	g.chr5:173524585_173524586delTG	uc003mcx.2	+						HMP19_uc011dfh.1_Intron	NM_015980	NP_057064
NKAPL	222698	broad.mit.edu	37	6	28227701	28227701	+	Frame_Shift_Del	DEL	A	-	-			2011-2334:2012-1339-T	g.chr6:28227701delA	uc003nkt.2	+	1	604	c.552delA	c.(550-552)AGAfs	p.R184fs	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532
HLA-F	3134	broad.mit.edu	37	6	29692430	29692441	+	Intron	DEL	AATTTCTGAGGG	-	-	rs1632952;rs72366349;rs41554217;rs41556013;rs41556914;rs41555914;rs41563314;rs41550116;rs41558818		2011-2334:2012-1339-T	g.chr6:29692430_29692441delAATTTCTGAGGG	uc010jrl.2	+						HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Intron|HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron	NM_018950	NP_061823
HLA-G	3135	broad.mit.edu	37	6	29893621	29893626	+	Intron	DEL	AAAAAC	-	-	rs142745021;rs67081368;rs28725110;rs140158039	by1000genomes	2011-2334:2012-1339-T	g.chr6:29893621_29893626delAAAAAC	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_5'Flank	NM_002127	NP_002118
HLA-A	3105	broad.mit.edu	37	6	29911583	29911584	+	Intron	INS	-	ACAC	ACAC	rs139109856;rs72558103	by1000genomes	2011-2334:2012-1339-T	g.chr6:29911583_29911584insACAC	uc003nol.2	+						HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Intron|HLA-A_uc003nok.2_Intron|HLA-A_uc003non.2_Intron|HLA-A_uc003noo.2_Intron|HLA-A_uc010jrr.2_Intron|HLA-A_uc003nom.2_Intron|HLA-A_uc010klp.2_Intron|HLA-A_uc011dmc.1_Intron|HLA-A_uc011dmd.1_Intron	NM_002116	NP_002107
MDGA1	266727	broad.mit.edu	37	6	37611903	37611903	+	Intron	DEL	C	-	-			2011-2334:2012-1339-T	g.chr6:37611903delC	uc003onu.1	-						MDGA1_uc003onv.1_Intron	NM_153487	NP_705691
PARK2	5071	broad.mit.edu	37	6	162365017	162365018	+	Intron	INS	-	T	T	rs112653486;rs140187520	by1000genomes	2011-2334:2012-1339-T	g.chr6:162365017_162365018insT	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron	NM_004562	NP_004553
PARK2	5071	broad.mit.edu	37	6	162851190	162851191	+	Intron	INS	-	GAC	GAC	rs145121165;rs144836117	by1000genomes	2011-2334:2012-1339-T	g.chr6:162851190_162851191insGAC	uc003qtx.3	-						PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron	NM_004562	NP_004553
C6orf118	168090	broad.mit.edu	37	6	165714891	165714892	+	Intron	DEL	AG	-	-	rs5881644		2011-2334:2012-1339-T	g.chr6:165714891_165714892delAG	uc003qum.3	-						C6orf118_uc011egi.1_Intron	NM_144980	NP_659417
RPS6KA2	6196	broad.mit.edu	37	6	167238204	167238207	+	Intron	DEL	TGTG	-	-	rs138945096		2011-2334:2012-1339-T	g.chr6:167238204_167238207delTGTG	uc003qvd.1	-						RPS6KA2_uc003qvc.1_Intron	NM_021135	NP_066958
SMOC2	64094	broad.mit.edu	37	6	168999797	168999800	+	Intron	DEL	CACT	-	-	rs145910492;rs79115216		2011-2334:2012-1339-T	g.chr6:168999797_168999800delCACT	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
THBS2	7058	broad.mit.edu	37	6	169636439	169636439	+	Intron	DEL	C	-	-			2011-2334:2012-1339-T	g.chr6:169636439delC	uc003qwt.2	-							NM_003247	NP_003238
PRKAR1B	5575	broad.mit.edu	37	7	628166	628168	+	Intron	DEL	CGG	-	-	rs143311672		2011-2334:2012-1339-T	g.chr7:628166_628168delCGG	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
C7orf50	84310	broad.mit.edu	37	7	1055674	1055675	+	Intron	INS	-	T	T	rs139561850;rs67072108	by1000genomes	2011-2334:2012-1339-T	g.chr7:1055674_1055675insT	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
DTX2	113878	broad.mit.edu	37	7	76116201	76116202	+	Intron	INS	-	TTT	TTT	rs2539644	by1000genomes	2011-2334:2012-1339-T	g.chr7:76116201_76116202insTTT	uc003uff.3	+						DTX2_uc011kgk.1_Intron|DTX2_uc003ufg.3_Intron|DTX2_uc003ufh.3_Intron|DTX2_uc003ufj.3_Intron	NM_020892	NP_065943
KIAA1549	57670	broad.mit.edu	37	7	138555817	138555817	+	Intron	DEL	C	-	-	rs35334186		2011-2334:2012-1339-T	g.chr7:138555817delC	uc011kql.1	-						KIAA1549_uc011kqi.1_Intron|KIAA1549_uc003vuk.3_Intron|KIAA1549_uc011kqj.1_Intron|KIAA1549_uc011kqk.1_Intron	NM_020910	NP_065961
TBXAS1	6916	broad.mit.edu	37	7	139709845	139709847	+	Intron	DEL	CAC	-	-			2011-2334:2012-1339-T	g.chr7:139709845_139709847delCAC	uc011kqv.1	+						TBXAS1_uc003vvh.2_Intron|TBXAS1_uc010lne.2_Intron|TBXAS1_uc011kqu.1_Intron|TBXAS1_uc003vvi.2_Intron|TBXAS1_uc003vvj.2_Intron|TBXAS1_uc011kqw.1_Intron	NM_001130966	NP_001124438
SSPO	23145	broad.mit.edu	37	7	149520153	149520153	+	Intron	DEL	A	-	-	rs67616784		2011-2334:2012-1339-T	g.chr7:149520153delA	uc010lpk.2	+						SSPO_uc010lpm.1_Intron|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_Intron|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857
PTPRN2	5799	broad.mit.edu	37	7	157863283	157863284	+	Intron	INS	-	CT	CT			2011-2334:2012-1339-T	g.chr7:157863283_157863284insCT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158234604	158234606	+	Intron	DEL	TGA	-	-			2011-2334:2012-1339-T	g.chr7:158234604_158234606delTGA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158317053	158317055	+	Intron	DEL	TCA	-	-	rs10551720;rs113684811	by1000genomes	2011-2334:2012-1339-T	g.chr7:158317053_158317055delTCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ERICH1	157697	broad.mit.edu	37	8	625293	625293	+	Intron	DEL	G	-	-			2011-2334:2012-1339-T	g.chr8:625293delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
ARHGEF10	9639	broad.mit.edu	37	8	1780880	1780881	+	Intron	DEL	AG	-	-			2011-2334:2012-1339-T	g.chr8:1780880_1780881delAG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
STC1	6781	broad.mit.edu	37	8	23712263	23712264	+	5'UTR	INS	-	GCT	GCT			2011-2334:2012-1339-T	g.chr8:23712263_23712264insGCT	uc003xdw.1	-	1						NM_003155	NP_003146
PKHD1L1	93035	broad.mit.edu	37	8	110473965	110473966	+	Intron	INS	-	T	T	rs144083788;rs140313571	by1000genomes;by1000genomes	2011-2334:2012-1339-T	g.chr8:110473965_110473966insT	uc003yne.2	+							NM_177531	NP_803875
ZFAT	57623	broad.mit.edu	37	8	135603038	135603040	+	Intron	DEL	CAC	-	-	rs34831588;rs143589930		2011-2334:2012-1339-T	g.chr8:135603038_135603040delCAC	uc003yup.2	-						ZFAT_uc003yun.2_Intron|ZFAT_uc003yuo.2_Intron|ZFAT_uc010meh.2_Intron|ZFAT_uc010mei.2_Intron|ZFAT_uc003yuq.2_Intron|ZFAT_uc010mej.2_Intron	NM_020863	NP_065914
TRAPPC9	83696	broad.mit.edu	37	8	141167351	141167351	+	Intron	DEL	T	-	-	rs67328557		2011-2334:2012-1339-T	g.chr8:141167351delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
TRAPPC9	83696	broad.mit.edu	37	8	141282112	141282113	+	Intron	INS	-	AG	AG	rs150940391	by1000genomes	2011-2334:2012-1339-T	g.chr8:141282112_141282113insAG	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
ZNF16	7564	broad.mit.edu	37	8	146172390	146172391	+	Intron	DEL	CT	-	-	rs66905525		2011-2334:2012-1339-T	g.chr8:146172390_146172391delCT	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
NUP214	8021	broad.mit.edu	37	9	134000768	134000768	+	5'Flank	DEL	T	-	-	rs3215836		2011-2334:2012-1339-T	g.chr9:134000768delT	uc004cag.2	+						NUP214_uc004cah.2_5'Flank|NUP214_uc004caf.1_5'Flank	NM_005085	NP_005076
POMT1	10585	broad.mit.edu	37	9	134377983	134377987	+	5'Flank	DEL	AAAAA	-	-	rs10577629		2011-2334:2012-1339-T	g.chr9:134377983_134377987delAAAAA	uc004cav.2	+						uc004cas.1_5'Flank|POMT1_uc011mci.1_5'Flank|POMT1_uc004cax.2_5'Flank|POMT1_uc011mcj.1_5'Flank|POMT1_uc004cau.2_5'Flank|POMT1_uc004caw.2_5'Flank|POMT1_uc011mck.1_5'Flank|POMT1_uc011mcl.1_5'Flank|POMT1_uc011mcm.1_5'Flank	NM_007171	NP_009102
COL5A1	1289	broad.mit.edu	37	9	137718565	137718566	+	Intron	INS	-	TGTA	TGTA	rs148921347;rs67214932	by1000genomes	2011-2334:2012-1339-T	g.chr9:137718565_137718566insTGTA	uc004cfe.2	+						uc004cff.2_Intron	NM_000093	NP_000084
EXD3	54932	broad.mit.edu	37	9	140276527	140276527	+	Intron	DEL	C	-	-			2011-2334:2012-1339-T	g.chr9:140276527delC	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncg.1_Intron|EXD3_uc004cmr.2_Intron|EXD3_uc004cms.2_Intron	NM_017820	NP_060290
PNPLA7	375775	broad.mit.edu	37	9	140398439	140398441	+	Intron	DEL	AAG	-	-			2011-2334:2012-1339-T	g.chr9:140398439_140398441delAAG	uc004cnf.2	-						C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Intron	NM_152286	NP_689499
SHOX	6473	broad.mit.edu	37	X	583531	583531	+	5'Flank	DEL	G	-	-			2011-2334:2012-1339-T	g.chrX:583531delG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SHOX	6473	broad.mit.edu	37	X	583534	583535	+	5'Flank	INS	-	C	C			2011-2334:2012-1339-T	g.chrX:583534_583535insC	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SHOX	6473	broad.mit.edu	37	X	583647	583648	+	5'Flank	DEL	AG	-	-			2011-2334:2012-1339-T	g.chrX:583647_583648delAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
PIR	8544	broad.mit.edu	37	X	15452129	15452130	+	Intron	INS	-	C	C			2011-2334:2012-1339-T	g.chrX:15452129_15452130insC	uc004cwu.2	-						PIR_uc004cwv.2_Intron	NM_003662	NP_003653
AGRN	375790	broad.mit.edu	37	1	966089	966090	+	Intron	DEL	TG	-	-			2011-2335:2012-1340-T	g.chr1:966089_966090delTG	uc001ack.1	+							NM_198576	NP_940978
CAMTA1	23261	broad.mit.edu	37	1	7715242	7715247	+	Intron	DEL	ACACAA	-	-	rs138741523	by1000genomes	2011-2335:2012-1340-T	g.chr1:7715242_7715247delACACAA	uc001aoi.2	+							NM_015215	NP_056030
PDZK1IP1	10158	broad.mit.edu	37	1	47650219	47650219	+	Intron	DEL	C	-	-			2011-2335:2012-1340-T	g.chr1:47650219delC	uc001cqw.2	-							NM_005764	NP_005755
USH2A	7399	broad.mit.edu	37	1	216390838	216390839	+	Frame_Shift_Ins	INS	-	A	A			2011-2335:2012-1340-T	g.chr1:216390838_216390839insA	uc001hku.1	-	15	3434_3435	c.3047_3048insT	c.(3046-3048)TTGfs	p.L1016fs	USH2A_uc001hkv.2_Frame_Shift_Ins_p.L1016fs	NM_206933	NP_996816
ANXA8	653145	broad.mit.edu	37	10	47058983	47058984	+	Intron	DEL	AC	-	-			2011-2335:2012-1340-T	g.chr10:47058983_47058984delAC	uc001jed.3	-								
IGF2	3481	broad.mit.edu	37	11	2152798	2152799	+	3'UTR	DEL	TG	-	-	rs146454663		2011-2335:2012-1340-T	g.chr11:2152798_2152799delTG	uc009yde.2	-	4					IGF2_uc001lvf.2_RNA|IGF2_uc001lvg.2_3'UTR|IGF2_uc009ydf.2_3'UTR|IGF2_uc001lvh.2_3'UTR|INS-IGF2_uc001lvi.2_RNA	NM_001007139	NP_001007140
CD81	975	broad.mit.edu	37	11	2406870	2406880	+	Intron	DEL	TGCACCCGTGC	-	-	rs79899024		2011-2335:2012-1340-T	g.chr11:2406870_2406880delTGCACCCGTGC	uc001lwf.1	+						CD81_uc001lwg.1_5'Flank	NM_004356	NP_004347
MSLNL	401827	broad.mit.edu	37	16	830786	830787	+	Frame_Shift_Ins	INS	-	A	A			2011-2335:2012-1340-T	g.chr16:830786_830787insA	uc002cjz.1	-	3	214_215	c.214_215insT	c.(214-216)CGTfs	p.R72fs		NM_001025190	NP_001020361
PIP5K1C	23396	broad.mit.edu	37	19	3647249	3647252	+	Intron	DEL	GAGG	-	-			2011-2335:2012-1340-T	g.chr19:3647249_3647252delGAGG	uc002lyj.1	-						PIP5K1C_uc010xhq.1_Intron|PIP5K1C_uc010xhr.1_Intron	NM_012398	NP_036530
FCER2	2208	broad.mit.edu	37	19	7753822	7753822	+	3'UTR	DEL	T	-	-			2011-2335:2012-1340-T	g.chr19:7753822delT	uc002mhn.2	-	11					FCER2_uc010xjs.1_3'UTR|FCER2_uc010xjt.1_3'UTR|FCER2_uc002mhm.2_3'UTR	NM_002002	NP_001993
APOB	338	broad.mit.edu	37	2	21228306	21228307	+	Frame_Shift_Ins	INS	-	A	A			2011-2335:2012-1340-T	g.chr2:21228306_21228307insA	uc002red.2	-	26	11561_11562	c.11433_11434insT	c.(11431-11436)TTTGAGfs	p.F3811fs		NM_000384	NP_000375
MAP2	4133	broad.mit.edu	37	2	210596051	210596052	+	3'UTR	INS	-	A	A			2011-2335:2012-1340-T	g.chr2:210596051_210596052insA	uc002vde.1	+	15					MAP2_uc002vdd.1_3'UTR|MAP2_uc002vdf.1_3'UTR|MAP2_uc002vdg.1_3'UTR|MAP2_uc002vdh.1_3'UTR|MAP2_uc002vdi.1_3'UTR	NM_002374	NP_002365
SPAG16	79582	broad.mit.edu	37	2	214272530	214272531	+	Intron	DEL	AG	-	-			2011-2335:2012-1340-T	g.chr2:214272530_214272531delAG	uc002veq.2	+						SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Intron|SPAG16_uc010zjk.1_Intron	NM_024532	NP_078808
TOM1	10043	broad.mit.edu	37	22	35739287	35739288	+	Intron	INS	-	AC	AC	rs142063849		2011-2335:2012-1340-T	g.chr22:35739287_35739288insAC	uc003ann.2	+						TOM1_uc011ami.1_Intron|TOM1_uc011amj.1_Intron|TOM1_uc003ans.2_Intron|TOM1_uc011amk.1_Intron|TOM1_uc003anp.2_Intron|TOM1_uc011aml.1_Intron|TOM1_uc003ano.2_Intron|TOM1_uc003anq.2_Intron|TOM1_uc003anr.2_Intron	NM_005488	NP_005479
MPPED1	758	broad.mit.edu	37	22	43828763	43828764	+	Intron	INS	-	G	G			2011-2335:2012-1340-T	g.chr22:43828763_43828764insG	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
MPPED1	758	broad.mit.edu	37	22	43828766	43828767	+	Intron	INS	-	G	G			2011-2335:2012-1340-T	g.chr22:43828766_43828767insG	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
TBC1D22A	25771	broad.mit.edu	37	22	47554663	47554664	+	Intron	DEL	AC	-	-			2011-2335:2012-1340-T	g.chr22:47554663_47554664delAC	uc003bib.2	+						TBC1D22A_uc010haf.2_Intron|TBC1D22A_uc003bic.2_Intron|TBC1D22A_uc003bie.2_Intron|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_Intron|TBC1D22A_uc003bif.2_Intron	NM_014346	NP_055161
NSD1	64324	broad.mit.edu	37	5	176720839	176720839	+	Frame_Shift_Del	DEL	G	-	-			2011-2335:2012-1340-T	g.chr5:176720839delG	uc003mfr.3	+	23	6608	c.6470delG	c.(6469-6471)TGGfs	p.W2157fs	NSD1_uc003mft.3_Frame_Shift_Del_p.W1888fs|NSD1_uc011dfx.1_Frame_Shift_Del_p.W1805fs	NM_022455	NP_071900
ADAP1	11033	broad.mit.edu	37	7	945218	945218	+	Intron	DEL	A	-	-			2011-2335:2012-1340-T	g.chr7:945218delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945340	945340	+	Intron	DEL	A	-	-			2011-2335:2012-1340-T	g.chr7:945340delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
RDH10	157506	broad.mit.edu	37	8	74227362	74227363	+	Intron	DEL	TC	-	-			2011-2335:2012-1340-T	g.chr8:74227362_74227363delTC	uc003xzi.2	+						RDH10_uc003xzj.2_Intron|uc003xzk.1_Intron	NM_172037	NP_742034
BAI1	575	broad.mit.edu	37	8	143601396	143601398	+	Intron	DEL	TGG	-	-			2011-2335:2012-1340-T	g.chr8:143601396_143601398delTGG	uc003ywm.2	+							NM_001702	NP_001693
TTF1	7270	broad.mit.edu	37	9	135253358	135253359	+	Intron	DEL	GA	-	-			2011-2335:2012-1340-T	g.chr9:135253358_135253359delGA	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
OLFM1	10439	broad.mit.edu	37	9	137983625	137983626	+	Intron	INS	-	GT	GT	rs138386408	by1000genomes	2011-2335:2012-1340-T	g.chr9:137983625_137983626insGT	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
SHOX	6473	broad.mit.edu	37	X	603969	603969	+	Intron	DEL	G	-	-			2011-2335:2012-1340-T	g.chrX:603969delG	uc004cph.1	+						SHOX_uc004cpi.2_Intron	NM_000451	NP_000442
DHRSX	207063	broad.mit.edu	37	X	2195431	2195432	+	Intron	INS	-	GA	GA			2011-2335:2012-1340-T	g.chrX:2195431_2195432insGA	uc004cqf.3	-							NM_145177	NP_660160
PLCH2	9651	broad.mit.edu	37	1	2415380	2415381	+	Intron	INS	-	G	G			2011-2336:2012-335-T	g.chr1:2415380_2415381insG	uc001aji.1	+						PLCH2_uc010nyz.1_Intron|PLCH2_uc009vle.1_Intron|PLCH2_uc001ajj.1_Intron|PLCH2_uc001ajk.1_Intron	NM_014638	NP_055453
FGFR2	2263	broad.mit.edu	37	10	123310734	123310734	+	Intron	DEL	A	-	-			2011-2336:2012-335-T	g.chr10:123310734delA	uc010qtk.1	-						FGFR2_uc010qtg.1_Intron|FGFR2_uc010qth.1_Intron|FGFR2_uc010qti.1_Intron|FGFR2_uc010qtj.1_Intron|FGFR2_uc010qtl.1_Intron|FGFR2_uc010qtm.1_Intron|FGFR2_uc001lfl.3_Intron|FGFR2_uc001lfm.2_Intron|FGFR2_uc001lfn.3_Intron|FGFR2_uc010qtn.1_Intron|FGFR2_uc010qto.1_Intron|FGFR2_uc001lfo.1_Intron|FGFR2_uc010qtp.1_Intron|FGFR2_uc010qtq.1_Intron	NM_000141	NP_000132
MLL2	8085	broad.mit.edu	37	12	49422833	49422846	+	Splice_Site	DEL	GTAGCACATACCTG	-	-	rs145782155	by1000genomes	2011-2336:2012-335-T	g.chr12:49422833_49422846delGTAGCACATACCTG	uc001rta.3	-	44	14251	c.14251_splice	c.e44+1	p.V4751_splice		NM_003482	NP_003473
RILPL1	353116	broad.mit.edu	37	12	123996621	123996624	+	Intron	DEL	TGTG	-	-			2011-2336:2012-335-T	g.chr12:123996621_123996624delTGTG	uc001ufe.2	-						RILPL1_uc001ufd.2_Intron|RILPL1_uc010tas.1_Intron	NM_178314	NP_847884
SYNE2	23224	broad.mit.edu	37	14	64490420	64490424	+	Intron	DEL	TTACT	-	-			2011-2336:2012-335-T	g.chr14:64490420_64490424delTTACT	uc001xgm.2	+						SYNE2_uc001xgl.2_Intron	NM_015180	NP_055995
FOXN3	1112	broad.mit.edu	37	14	89827692	89827693	+	Intron	INS	-	CAC	CAC			2011-2336:2012-335-T	g.chr14:89827692_89827693insCAC	uc001xxo.3	-						FOXN3_uc001xxn.3_Intron|FOXN3_uc010atk.2_Intron	NM_001085471	NP_001078940
THSD4	79875	broad.mit.edu	37	15	71492142	71492143	+	Intron	DEL	TG	-	-			2011-2336:2012-335-T	g.chr15:71492142_71492143delTG	uc002atb.1	+							NM_024817	NP_079093
RASGRF1	5923	broad.mit.edu	37	15	79384671	79384672	+	5'Flank	INS	-	CA	CA			2011-2336:2012-335-T	g.chr15:79384671_79384672insCA	uc002beq.2	-						RASGRF1_uc002bep.2_5'Flank|RASGRF1_uc002ber.3_5'Flank	NM_002891	NP_002882
DPEP1	1800	broad.mit.edu	37	16	89701544	89701545	+	Intron	INS	-	C	C			2011-2336:2012-335-T	g.chr16:89701544_89701545insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
CSNK1D	1453	broad.mit.edu	37	17	80212191	80212192	+	Intron	INS	-	G	G	rs35943870		2011-2336:2012-335-T	g.chr17:80212191_80212192insG	uc002kej.2	-						SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Intron|CSNK1D_uc002kei.2_Intron|CSNK1D_uc010wvj.1_Intron|CSNK1D_uc010dil.2_5'Flank|CSNK1D_uc002keh.2_5'UTR|CSNK1D_uc010dim.1_5'Flank	NM_001893	NP_001884
CSNK1D	1453	broad.mit.edu	37	17	80212193	80212194	+	Intron	INS	-	GTGC	GTGC			2011-2336:2012-335-T	g.chr17:80212193_80212194insGTGC	uc002kej.2	-						SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Intron|CSNK1D_uc002kei.2_Intron|CSNK1D_uc010wvj.1_Intron|CSNK1D_uc010dil.2_5'Flank|CSNK1D_uc002keh.2_5'UTR|CSNK1D_uc010dim.1_5'Flank	NM_001893	NP_001884
MC2R	4158	broad.mit.edu	37	18	13887386	13887387	+	Intron	DEL	AA	-	-			2011-2336:2012-335-T	g.chr18:13887386_13887387delAA	uc002ksp.1	-							NM_000529	NP_000520
HDGFRP2	84717	broad.mit.edu	37	19	4492888	4492889	+	Intron	INS	-	TG	TG			2011-2336:2012-335-T	g.chr19:4492888_4492889insTG	uc002mao.2	+						HDGFRP2_uc002map.2_Intron|HDGFRP2_uc010dtz.1_Intron	NM_001001520	NP_001001520
TNS1	7145	broad.mit.edu	37	2	218670184	218670186	+	Intron	DEL	CAC	-	-			2011-2336:2012-335-T	g.chr2:218670184_218670186delCAC	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
C20orf26	26074	broad.mit.edu	37	20	20337194	20337195	+	Intron	INS	-	TG	TG			2011-2336:2012-335-T	g.chr20:20337194_20337195insTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
BAGE2	85319	broad.mit.edu	37	21	11057307	11057308	+	Intron	INS	-	AA	AA	rs79091593;rs143364304		2011-2336:2012-335-T	g.chr21:11057307_11057308insAA	uc002yit.1	-							NM_182482	NP_872288
RUNX1	861	broad.mit.edu	37	21	36421413	36421413	+	5'UTR	DEL	A	-	-			2011-2336:2012-335-T	g.chr21:36421413delA	uc010gmu.2	-	1					RUNX1_uc002yut.1_Intron|RUNX1_uc010gmv.2_Intron|RUNX1_uc002yuj.3_Intron|RUNX1_uc002yuk.3_5'UTR|RUNX1_uc002yum.1_5'Flank|RUNX1_uc010gmw.1_Intron	NM_001754	NP_001745
TMPRSS6	164656	broad.mit.edu	37	22	37494078	37494079	+	Intron	INS	-	G	G			2011-2336:2012-335-T	g.chr22:37494078_37494079insG	uc003aqs.1	-						TMPRSS6_uc003aqt.1_Intron|TMPRSS6_uc003aqu.2_Intron	NM_153609	NP_705837
PIK3CA	5290	broad.mit.edu	37	3	178865774	178865775	+	5'Flank	INS	-	C	C	rs144390116;rs67786336	by1000genomes	2011-2336:2012-335-T	g.chr3:178865774_178865775insC	uc003fjk.2	+						uc003fjj.2_5'Flank	NM_006218	NP_006209
TNK2	10188	broad.mit.edu	37	3	195597917	195597918	+	Intron	INS	-	G	G			2011-2336:2012-335-T	g.chr3:195597917_195597918insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
RASA1	5921	broad.mit.edu	37	5	86626760	86626761	+	Intron	INS	-	T	T			2011-2336:2012-335-T	g.chr5:86626760_86626761insT	uc003kiw.2	+						RASA1_uc010jav.2_Intron|RASA1_uc003kix.2_Intron|RASA1_uc011ctv.1_Intron|RASA1_uc011ctw.1_Frame_Shift_Ins_p.M1fs|RASA1_uc010jaw.2_Intron|RASA1_uc011ctu.1_Intron	NM_002890	NP_002881
RASA1	5921	broad.mit.edu	37	5	86668106	86668107	+	Intron	INS	-	A	A			2011-2336:2012-335-T	g.chr5:86668106_86668107insA	uc003kiw.2	+						RASA1_uc010jav.2_Intron|RASA1_uc003kix.2_Intron|RASA1_uc011ctv.1_Intron|RASA1_uc011ctw.1_Intron|RASA1_uc010jaw.2_Intron	NM_002890	NP_002881
ZFAND2A	90637	broad.mit.edu	37	7	1199203	1199203	+	Intron	DEL	G	-	-			2011-2336:2012-335-T	g.chr7:1199203delG	uc003skc.2	-						ZFAND2A_uc003skd.3_Intron|uc003skf.1_5'Flank	NM_182491	NP_872297
DPP6	1804	broad.mit.edu	37	7	154675741	154675742	+	Intron	DEL	CA	-	-			2011-2336:2012-335-T	g.chr7:154675741_154675742delCA	uc003wlk.2	+						DPP6_uc003wli.2_Intron|DPP6_uc003wlm.2_Intron|DPP6_uc011kvq.1_Intron	NM_130797	NP_570629
PTPRN2	5799	broad.mit.edu	37	7	157918831	157918832	+	Intron	INS	-	C	C			2011-2336:2012-335-T	g.chr7:157918831_157918832insC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
CDKN2A	1029	broad.mit.edu	37	9	21971167	21971168	+	Frame_Shift_Ins	INS	-	GCGC	GCGC			2011-2336:2012-335-T	g.chr9:21971167_21971168insGCGC	uc003zpk.2	-	2	402_403	c.190_191insGCGC	c.(190-192)CTGfs	p.L64fs	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Frame_Shift_Ins_p.A119fs	NM_000077	NP_000068
FANCG	2189	broad.mit.edu	37	9	35079973	35079974	+	5'UTR	INS	-	A	A	rs144711167	by1000genomes	2011-2336:2012-335-T	g.chr9:35079973_35079974insA	uc003zwb.1	-	1					FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_5'Flank	NM_004629	NP_004620
FAM125B	89853	broad.mit.edu	37	9	129246803	129246805	+	Intron	DEL	CTT	-	-	rs35528692;rs35371157		2011-2336:2012-335-T	g.chr9:129246803_129246805delCTT	uc004bqh.1	+						FAM125B_uc011lzy.1_Intron|FAM125B_uc010mxd.2_Intron	NM_033446	NP_258257
MED27	9442	broad.mit.edu	37	9	134839673	134839674	+	Intron	INS	-	TGA	TGA			2011-2336:2012-335-T	g.chr9:134839673_134839674insTGA	uc004cbe.1	-						MED27_uc004cbf.1_Intron|MED27_uc011mco.1_Intron|MED27_uc004cbg.3_Intron	NM_004269	NP_004260
MED27	9442	broad.mit.edu	37	9	134839680	134839681	+	Intron	DEL	AT	-	-	rs146534053	by1000genomes	2011-2336:2012-335-T	g.chr9:134839680_134839681delAT	uc004cbe.1	-						MED27_uc004cbf.1_Intron|MED27_uc011mco.1_Intron|MED27_uc004cbg.3_Intron	NM_004269	NP_004260
OLFM1	10439	broad.mit.edu	37	9	137983571	137983572	+	Intron	INS	-	CA	CA	rs71895413		2011-2336:2012-335-T	g.chr9:137983571_137983572insCA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
OLFM1	10439	broad.mit.edu	37	9	137983586	137983587	+	Intron	DEL	CC	-	-	rs72122511		2011-2336:2012-335-T	g.chr9:137983586_137983587delCC	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
NACC2	138151	broad.mit.edu	37	9	138916002	138916003	+	Intron	DEL	GT	-	-	rs71507095		2011-2336:2012-335-T	g.chr9:138916002_138916003delGT	uc004cgw.2	-						NACC2_uc010nbh.2_Intron	NM_144653	NP_653254
LGR6	59352	broad.mit.edu	37	1	202174496	202174497	+	Intron	DEL	AA	-	-	rs141417100	by1000genomes	2011-2337:2012-307-T	g.chr1:202174496_202174497delAA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
USH2A	7399	broad.mit.edu	37	1	215914592	215914592	+	Intron	DEL	A	-	-			2011-2337:2012-307-T	g.chr1:215914592delA	uc001hku.1	-							NM_206933	NP_996816
ANXA8	653145	broad.mit.edu	37	10	47014230	47014230	+	Intron	DEL	A	-	-	rs66488210		2011-2337:2012-307-T	g.chr10:47014230delA	uc001jed.3	-								
ANXA8	653145	broad.mit.edu	37	10	47058662	47058663	+	Intron	DEL	AT	-	-			2011-2337:2012-307-T	g.chr10:47058662_47058663delAT	uc001jed.3	-								
LHPP	64077	broad.mit.edu	37	10	126226788	126226788	+	Intron	DEL	C	-	-	rs66497940		2011-2337:2012-307-T	g.chr10:126226788delC	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron	NM_022126	NP_071409
OR8H2	390151	broad.mit.edu	37	11	55872323	55872323	+	5'Flank	DEL	G	-	-	rs113669153		2011-2337:2012-307-T	g.chr11:55872323delG	uc010riy.1	+							NM_001005200	NP_001005200
SLC22A12	116085	broad.mit.edu	37	11	64363561	64363562	+	Intron	INS	-	ATGG	ATGG	rs146602952		2011-2337:2012-307-T	g.chr11:64363561_64363562insATGG	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
FAM168A	23201	broad.mit.edu	37	11	73141323	73141324	+	Intron	DEL	GT	-	-	rs35239246		2011-2337:2012-307-T	g.chr11:73141323_73141324delGT	uc001otz.1	-						FAM168A_uc001oty.1_Intron|FAM168A_uc009ytp.1_Intron	NM_015159	NP_055974
CCDC67	159989	broad.mit.edu	37	11	93126111	93126112	+	Intron	INS	-	TT	TT			2011-2337:2012-307-T	g.chr11:93126111_93126112insTT	uc001pdq.2	+						CCDC67_uc001pdo.1_Intron|CCDC67_uc001pdp.2_Intron	NM_181645	NP_857596
COL4A2	1284	broad.mit.edu	37	13	111133550	111133550	+	Intron	DEL	T	-	-			2011-2337:2012-307-T	g.chr13:111133550delT	uc001vqx.2	+							NM_001846	NP_001837
TFDP1	7027	broad.mit.edu	37	13	114267941	114267942	+	Intron	INS	-	GT	GT	rs149372254;rs66526475	by1000genomes	2011-2337:2012-307-T	g.chr13:114267941_114267942insGT	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
RASA3	22821	broad.mit.edu	37	13	114873718	114873719	+	Intron	DEL	AT	-	-	rs74218188		2011-2337:2012-307-T	g.chr13:114873718_114873719delAT	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
LMF1	64788	broad.mit.edu	37	16	972685	972685	+	Intron	DEL	T	-	-			2011-2337:2012-307-T	g.chr16:972685delT	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron|uc002ckl.1_Intron	NM_022773	NP_073610
MAPK8IP3	23162	broad.mit.edu	37	16	1788428	1788429	+	Intron	INS	-	CC	CC			2011-2337:2012-307-T	g.chr16:1788428_1788429insCC	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
SALL1	6299	broad.mit.edu	37	16	51175655	51175656	+	In_Frame_Ins	INS	-	GCT	GCT	rs113614842		2011-2337:2012-307-T	g.chr16:51175655_51175656insGCT	uc010vgs.1	-	2	508_509	c.477_478insAGC	c.(475-480)insAGC	p.159_160insS	SALL1_uc010vgr.1_In_Frame_Ins_p.62_63insS|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959
NLRC5	84166	broad.mit.edu	37	16	57104802	57104803	+	Intron	INS	-	T	T			2011-2337:2012-307-T	g.chr16:57104802_57104803insT	uc002ekk.1	+						NLRC5_uc010ccr.1_Intron|NLRC5_uc010ccs.1_Intron|NLRC5_uc002eko.1_Intron|NLRC5_uc002ekq.1_Intron|NLRC5_uc002ekr.1_Intron	NM_032206	NP_115582
NLRC5	84166	broad.mit.edu	37	16	57105571	57105572	+	Intron	INS	-	AGTA	AGTA	rs144570575	by1000genomes	2011-2337:2012-307-T	g.chr16:57105571_57105572insAGTA	uc002ekk.1	+						NLRC5_uc010ccr.1_Intron|NLRC5_uc010ccs.1_Intron|NLRC5_uc002eko.1_Intron|NLRC5_uc002ekq.1_Intron|NLRC5_uc002ekr.1_Intron	NM_032206	NP_115582
DPEP1	1800	broad.mit.edu	37	16	89701305	89701306	+	Intron	INS	-	C	C			2011-2337:2012-307-T	g.chr16:89701305_89701306insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
RPH3AL	9501	broad.mit.edu	37	17	137956	137957	+	Intron	INS	-	CT	CT			2011-2337:2012-307-T	g.chr17:137956_137957insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	1022752	1022753	+	Intron	INS	-	T	T	rs139090925;rs67983147	by1000genomes	2011-2337:2012-307-T	g.chr17:1022752_1022753insT	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
GRAP	10750	broad.mit.edu	37	17	18933544	18933546	+	Intron	DEL	GCA	-	-			2011-2337:2012-307-T	g.chr17:18933544_18933546delGCA	uc002guy.2	-							NM_006613	NP_006604
RAB40B	10966	broad.mit.edu	37	17	80650095	80650095	+	Intron	DEL	G	-	-			2011-2337:2012-307-T	g.chr17:80650095delG	uc002kft.2	-						RAB40B_uc002kfs.2_Intron	NM_006822	NP_006813
CEP192	55125	broad.mit.edu	37	18	13106747	13106748	+	Intron	INS	-	ACC	ACC			2011-2337:2012-307-T	g.chr18:13106747_13106748insACC	uc010xac.1	+						CEP192_uc010dlf.1_Intron|CEP192_uc010xad.1_Intron|CEP192_uc002kru.2_Intron|CEP192_uc002krv.2_Intron|CEP192_uc002krw.2_Intron|CEP192_uc002krx.2_Intron|CEP192_uc002kry.2_Intron	NM_032142	NP_115518
PXDN	7837	broad.mit.edu	37	2	1659156	1659157	+	Intron	DEL	AC	-	-			2011-2337:2012-307-T	g.chr2:1659156_1659157delAC	uc002qxa.2	-						PXDN_uc002qxb.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87582068	87582069	+	Intron	INS	-	CCCTGA	CCCTGA			2011-2337:2012-307-T	g.chr2:87582068_87582069insCCCTGA	uc002srs.3	+								
TASP1	55617	broad.mit.edu	37	20	13410262	13410263	+	Intron	INS	-	GT	GT	rs144272507;rs36104978	by1000genomes	2011-2337:2012-307-T	g.chr20:13410262_13410263insGT	uc002woi.2	-						TASP1_uc010zri.1_Intron|TASP1_uc002woh.2_Intron	NM_017714	NP_060184
TOM1	10043	broad.mit.edu	37	22	35739250	35739251	+	Intron	INS	-	CA	CA			2011-2337:2012-307-T	g.chr22:35739250_35739251insCA	uc003ann.2	+						TOM1_uc011ami.1_Intron|TOM1_uc011amj.1_Intron|TOM1_uc003ans.2_Intron|TOM1_uc011amk.1_Intron|TOM1_uc003anp.2_Intron|TOM1_uc011aml.1_Intron|TOM1_uc003ano.2_Intron|TOM1_uc003anq.2_Intron|TOM1_uc003anr.2_Intron	NM_005488	NP_005479
TNK2	10188	broad.mit.edu	37	3	195597873	195597874	+	Intron	INS	-	G	G	rs140349508	by1000genomes	2011-2337:2012-307-T	g.chr3:195597873_195597874insG	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
PDZD2	23037	broad.mit.edu	37	5	32002860	32002860	+	Intron	DEL	C	-	-			2011-2337:2012-307-T	g.chr5:32002860delC	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
ADAP1	11033	broad.mit.edu	37	7	945259	945260	+	Intron	INS	-	A	A	rs145893866		2011-2337:2012-307-T	g.chr7:945259_945260insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982076	982077	+	Intron	INS	-	G	G			2011-2337:2012-307-T	g.chr7:982076_982077insG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982353	982355	+	Intron	DEL	GAC	-	-			2011-2337:2012-307-T	g.chr7:982353_982355delGAC	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf50	84310	broad.mit.edu	37	7	1110451	1110452	+	Intron	INS	-	CACATGTG	CACATGTG	rs13224944		2011-2337:2012-307-T	g.chr7:1110451_1110452insCACATGTG	uc003sju.2	-						C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
MAD1L1	8379	broad.mit.edu	37	7	1980649	1980650	+	Intron	INS	-	T	T	rs143896454	by1000genomes	2011-2337:2012-307-T	g.chr7:1980649_1980650insT	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron|MAD1L1_uc003sld.1_5'Flank	NM_001013836	NP_001013858
TOP1MT	116447	broad.mit.edu	37	8	144404078	144404081	+	Intron	DEL	ACAG	-	-			2011-2337:2012-307-T	g.chr8:144404078_144404081delACAG	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
NACC2	138151	broad.mit.edu	37	9	138915939	138915940	+	Intron	DEL	GT	-	-			2011-2337:2012-307-T	g.chr9:138915939_138915940delGT	uc004cgw.2	-						NACC2_uc010nbh.2_Intron	NM_144653	NP_653254
AGRN	375790	broad.mit.edu	37	1	966062	966063	+	Intron	INS	-	GC	GC			2011-2338:2012-306-T	g.chr1:966062_966063insGC	uc001ack.1	+							NM_198576	NP_940978
MEGF6	1953	broad.mit.edu	37	1	3418581	3418581	+	Intron	DEL	G	-	-			2011-2338:2012-306-T	g.chr1:3418581delG	uc001akl.2	-						MEGF6_uc001akk.2_Intron	NM_001409	NP_001400
CAMTA1	23261	broad.mit.edu	37	1	6997555	6997555	+	Intron	DEL	T	-	-			2011-2338:2012-306-T	g.chr1:6997555delT	uc001aoi.2	+							NM_015215	NP_056030
CAMTA1	23261	broad.mit.edu	37	1	6997561	6997564	+	Intron	DEL	ACTT	-	-			2011-2338:2012-306-T	g.chr1:6997561_6997564delACTT	uc001aoi.2	+							NM_015215	NP_056030
CAMTA1	23261	broad.mit.edu	37	1	6997571	6997573	+	Intron	DEL	ACT	-	-	rs148447554	by1000genomes	2011-2338:2012-306-T	g.chr1:6997571_6997573delACT	uc001aoi.2	+							NM_015215	NP_056030
SDC3	9672	broad.mit.edu	37	1	31367103	31367104	+	Intron	DEL	TG	-	-	rs5773326;rs3080429		2011-2338:2012-306-T	g.chr1:31367103_31367104delTG	uc001bse.2	-							NM_014654	NP_055469
MAGI3	260425	broad.mit.edu	37	1	114015357	114015358	+	Intron	DEL	TG	-	-	rs35390645		2011-2338:2012-306-T	g.chr1:114015357_114015358delTG	uc001edk.2	+						MAGI3_uc001edh.3_Intron|MAGI3_uc001edi.3_Intron|MAGI3_uc010owm.1_Intron	NM_001142782	NP_001136254
KIF26B	55083	broad.mit.edu	37	1	245606320	245606322	+	Intron	DEL	AGA	-	-			2011-2338:2012-306-T	g.chr1:245606320_245606322delAGA	uc001ibf.1	+						KIF26B_uc010pyq.1_Intron	NM_018012	NP_060482
ADARB2	105	broad.mit.edu	37	10	1506873	1506874	+	Intron	INS	-	AT	AT			2011-2338:2012-306-T	g.chr10:1506873_1506874insAT	uc009xhq.2	-							NM_018702	NP_061172
CCDC6	8030	broad.mit.edu	37	10	61641828	61641829	+	Intron	DEL	CG	-	-	rs72411640;rs71185291		2011-2338:2012-306-T	g.chr10:61641828_61641829delCG	uc001jks.3	-							NM_005436	NP_005427
STK32C	282974	broad.mit.edu	37	10	134081648	134081649	+	Intron	DEL	TG	-	-			2011-2338:2012-306-T	g.chr10:134081648_134081649delTG	uc001lle.1	-						STK32C_uc001lld.1_Intron|STK32C_uc010quu.1_Intron|STK32C_uc009ybc.1_Intron|STK32C_uc009ybd.1_Intron	NM_173575	NP_775846
KNDC1	85442	broad.mit.edu	37	10	135037364	135037365	+	Intron	DEL	TG	-	-			2011-2338:2012-306-T	g.chr10:135037364_135037365delTG	uc001llz.1	+							NM_152643	NP_689856
MS4A5	64232	broad.mit.edu	37	11	60214597	60214598	+	Intron	INS	-	CTATG	CTATG			2011-2338:2012-306-T	g.chr11:60214597_60214598insCTATG	uc001npo.2	+							NM_023945	NP_076434
VWCE	220001	broad.mit.edu	37	11	61039647	61039648	+	Intron	DEL	AC	-	-			2011-2338:2012-306-T	g.chr11:61039647_61039648delAC	uc001nra.2	-						VWCE_uc001nrb.2_Intron	NM_152718	NP_689931
B4GALNT3	283358	broad.mit.edu	37	12	620856	620859	+	Intron	DEL	TCTG	-	-	rs148555126;rs147776998	by1000genomes;by1000genomes	2011-2338:2012-306-T	g.chr12:620856_620859delTCTG	uc001qii.1	+							NM_173593	NP_775864
RPH3A	22895	broad.mit.edu	37	12	113012327	113012328	+	5'Flank	INS	-	GTT	GTT			2011-2338:2012-306-T	g.chr12:113012327_113012328insGTT	uc010syl.1	+							NM_001143854	NP_001137326
RPH3A	22895	broad.mit.edu	37	12	113012330	113012331	+	5'Flank	INS	-	GAA	GAA			2011-2338:2012-306-T	g.chr12:113012330_113012331insGAA	uc010syl.1	+							NM_001143854	NP_001137326
NCOR2	9612	broad.mit.edu	37	12	124952583	124952584	+	Intron	INS	-	TCC	TCC	rs147189850	by1000genomes	2011-2338:2012-306-T	g.chr12:124952583_124952584insTCC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
TMEM132D	121256	broad.mit.edu	37	12	129573290	129573290	+	Intron	DEL	G	-	-			2011-2338:2012-306-T	g.chr12:129573290delG	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
SMOC1	64093	broad.mit.edu	37	14	70391670	70391670	+	Intron	DEL	G	-	-			2011-2338:2012-306-T	g.chr14:70391670delG	uc001xls.1	+						SMOC1_uc001xlt.1_Intron	NM_022137	NP_071420
BDKRB2	624	broad.mit.edu	37	14	96709694	96709695	+	3'UTR	INS	-	A	A			2011-2338:2012-306-T	g.chr14:96709694_96709695insA	uc010avm.1	+	3					BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_3'UTR|BDKRB2_uc001yfg.2_3'UTR	NM_000623	NP_000614
LMF1	64788	broad.mit.edu	37	16	1000095	1000096	+	Intron	DEL	AG	-	-			2011-2338:2012-306-T	g.chr16:1000095_1000096delAG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
IFT140	9742	broad.mit.edu	37	16	1656928	1656929	+	Intron	DEL	CA	-	-	rs111286800	by1000genomes	2011-2338:2012-306-T	g.chr16:1656928_1656929delCA	uc002cmb.2	-							NM_014714	NP_055529
COTL1	23406	broad.mit.edu	37	16	84612513	84612534	+	Intron	DEL	ACATGCATGCATACACACAGAT	-	-	rs11272175;rs79753762		2011-2338:2012-306-T	g.chr16:84612513_84612534delACATGCATGCATACACACAGAT	uc002fid.2	-						COTL1_uc002fie.2_Intron|COTL1_uc010chk.2_Intron|COTL1_uc002fif.1_5'Flank	NM_021149	NP_066972
ANKRD11	29123	broad.mit.edu	37	16	89372532	89372533	+	Intron	INS	-	CG	CG			2011-2338:2012-306-T	g.chr16:89372532_89372533insCG	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_Intron|ANKRD11_uc002fnf.1_Intron	NM_013275	NP_037407
DPEP1	1800	broad.mit.edu	37	16	89701258	89701259	+	Intron	INS	-	C	C			2011-2338:2012-306-T	g.chr16:89701258_89701259insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701363	89701363	+	Intron	DEL	T	-	-			2011-2338:2012-306-T	g.chr16:89701363delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701496	89701497	+	Intron	INS	-	C	C			2011-2338:2012-306-T	g.chr16:89701496_89701497insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
TBC1D16	125058	broad.mit.edu	37	17	77998224	77998225	+	Intron	INS	-	TAC	TAC			2011-2338:2012-306-T	g.chr17:77998224_77998225insTAC	uc002jxj.2	-							NM_019020	NP_061893
RPTOR	57521	broad.mit.edu	37	17	78608443	78608453	+	Intron	DEL	ATACTGTATGT	-	-	rs140181873;rs72281071;rs116652321;rs72042835	by1000genomes;by1000genomes	2011-2338:2012-306-T	g.chr17:78608443_78608453delATACTGTATGT	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
FN3KRP	79672	broad.mit.edu	37	17	80675943	80675944	+	Intron	DEL	TG	-	-			2011-2338:2012-306-T	g.chr17:80675943_80675944delTG	uc002kfu.2	+						FN3KRP_uc010wvr.1_Intron	NM_024619	NP_078895
BCL2	596	broad.mit.edu	37	18	60885975	60885975	+	Intron	DEL	T	-	-	rs113355863	by1000genomes	2011-2338:2012-306-T	g.chr18:60885975delT	uc002lit.1	-						BCL2_uc002liu.1_Intron	NM_000633	NP_000624
ZNF236	7776	broad.mit.edu	37	18	74679557	74679558	+	Intron	INS	-	GGT	GGT	rs113352608		2011-2338:2012-306-T	g.chr18:74679557_74679558insGGT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
SBNO2	22904	broad.mit.edu	37	19	1164574	1164575	+	Intron	INS	-	A	A			2011-2338:2012-306-T	g.chr19:1164574_1164575insA	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
TCF3	6929	broad.mit.edu	37	19	1627946	1627946	+	Intron	DEL	A	-	-	rs57823543		2011-2338:2012-306-T	g.chr19:1627946delA	uc002ltr.2	-						TCF3_uc002ltt.3_Intron|TCF3_uc002ltq.2_Intron|TCF3_uc002lts.1_Intron	NM_003200	NP_003191
TCF3	6929	broad.mit.edu	37	19	1627951	1627951	+	Intron	DEL	A	-	-	rs66635180		2011-2338:2012-306-T	g.chr19:1627951delA	uc002ltr.2	-						TCF3_uc002ltt.3_Intron|TCF3_uc002ltq.2_Intron|TCF3_uc002lts.1_Intron	NM_003200	NP_003191
CACNG7	59284	broad.mit.edu	37	19	54424365	54424366	+	Intron	INS	-	C	C	rs67792019		2011-2338:2012-306-T	g.chr19:54424365_54424366insC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
TPO	7173	broad.mit.edu	37	2	1426135	1426136	+	Intron	INS	-	T	T			2011-2338:2012-306-T	g.chr2:1426135_1426136insT	uc002qww.2	+						TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Intron|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Intron	NM_000547	NP_000538
RMND5A	64795	broad.mit.edu	37	2	87576909	87576910	+	Intron	INS	-	G	G			2011-2338:2012-306-T	g.chr2:87576909_87576910insG	uc002srs.3	+								
RAB3GAP1	22930	broad.mit.edu	37	2	135875141	135875143	+	Intron	DEL	CTT	-	-			2011-2338:2012-306-T	g.chr2:135875141_135875143delCTT	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
RAB3GAP1	22930	broad.mit.edu	37	2	135875222	135875224	+	Intron	DEL	CTG	-	-			2011-2338:2012-306-T	g.chr2:135875222_135875224delCTG	uc002tuj.2	+						RAB3GAP1_uc010fnf.2_Intron|RAB3GAP1_uc010fng.2_Intron|RAB3GAP1_uc010fnh.1_Intron	NM_012233	NP_036365
TTN	7273	broad.mit.edu	37	2	179500136	179500137	+	Intron	INS	-	A	A			2011-2338:2012-306-T	g.chr2:179500136_179500137insA	uc010zfg.1	-						TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron	NM_133378	NP_596869
C20orf26	26074	broad.mit.edu	37	20	20337720	20337721	+	Intron	INS	-	GT	GT			2011-2338:2012-306-T	g.chr20:20337720_20337721insGT	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
ADAMTS5	11096	broad.mit.edu	37	21	28338947	28338947	+	5'UTR	DEL	T	-	-	rs79253698		2011-2338:2012-306-T	g.chr21:28338947delT	uc002ymg.2	-	1						NM_007038	NP_008969
ADAMTS5	11096	broad.mit.edu	37	21	28338951	28338952	+	5'UTR	DEL	GT	-	-	rs150236756;rs71183590		2011-2338:2012-306-T	g.chr21:28338951_28338952delGT	uc002ymg.2	-	1						NM_007038	NP_008969
COL18A1	80781	broad.mit.edu	37	21	46857216	46857217	+	Intron	INS	-	CAGA	CAGA	rs149679949	by1000genomes	2011-2338:2012-306-T	g.chr21:46857216_46857217insCAGA	uc002zhg.2	+							NM_130445	NP_569712
CACNA1I	8911	broad.mit.edu	37	22	39978966	39978967	+	Intron	INS	-	ATCT	ATCT	rs149804016;rs146182752	by1000genomes	2011-2338:2012-306-T	g.chr22:39978966_39978967insATCT	uc003ayc.2	+						CACNA1I_uc003ayd.2_Intron	NM_021096	NP_066919
TTLL8	164714	broad.mit.edu	37	22	50467012	50467012	+	Intron	DEL	C	-	-			2011-2338:2012-306-T	g.chr22:50467012delC	uc011ark.1	-							NM_001080447	NP_001073916
CPNE4	131034	broad.mit.edu	37	3	131256128	131256128	+	Intron	DEL	T	-	-			2011-2338:2012-306-T	g.chr3:131256128delT	uc003eok.2	-						CPNE4_uc011blq.1_Intron|CPNE4_uc003eol.2_Intron|CPNE4_uc003eom.2_Intron|CPNE4_uc003eoj.2_Intron	NM_130808	NP_570720
TNK2	10188	broad.mit.edu	37	3	195614759	195614776	+	Intron	DEL	GCACGTGCATGCGTGTGT	-	-	rs59022470		2011-2338:2012-306-T	g.chr3:195614759_195614776delGCACGTGCATGCGTGTGT	uc003fvu.1	-						TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_5'Flank|TNK2_uc010hzx.1_Intron	NM_005781	NP_005772
PCYT1A	5130	broad.mit.edu	37	3	195977302	195977303	+	Intron	INS	-	GCTGAG	GCTGAG			2011-2338:2012-306-T	g.chr3:195977302_195977303insGCTGAG	uc003fwg.2	-						PCYT1A_uc003fwh.2_Intron	NM_005017	NP_005008
JAKMIP1	152789	broad.mit.edu	37	4	6128342	6128343	+	Intron	INS	-	AC	AC	rs141257246	by1000genomes	2011-2338:2012-306-T	g.chr4:6128342_6128343insAC	uc003giu.3	-						JAKMIP1_uc010idb.1_Intron|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Intron|JAKMIP1_uc010ide.2_Intron	NM_144720	NP_653321
NKD2	85409	broad.mit.edu	37	5	1022574	1022575	+	Intron	INS	-	A	A			2011-2338:2012-306-T	g.chr5:1022574_1022575insA	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
SLIT3	6586	broad.mit.edu	37	5	168173285	168173285	+	Intron	DEL	T	-	-	rs79937468		2011-2338:2012-306-T	g.chr5:168173285delT	uc003mab.2	-						SLIT3_uc010jjg.2_Intron	NM_003062	NP_003053
SLIT3	6586	broad.mit.edu	37	5	168173298	168173303	+	Intron	DEL	TGTGGG	-	-			2011-2338:2012-306-T	g.chr5:168173298_168173303delTGTGGG	uc003mab.2	-						SLIT3_uc010jjg.2_Intron	NM_003062	NP_003053
SLIT3	6586	broad.mit.edu	37	5	168173316	168173317	+	Intron	INS	-	GT	GT			2011-2338:2012-306-T	g.chr5:168173316_168173317insGT	uc003mab.2	-						SLIT3_uc010jjg.2_Intron	NM_003062	NP_003053
RNGTT	8732	broad.mit.edu	37	6	89638989	89638989	+	Intron	DEL	A	-	-	rs111616936		2011-2338:2012-306-T	g.chr6:89638989delA	uc003pmr.2	-						RNGTT_uc003pms.2_Intron|RNGTT_uc011dzu.1_Intron|RNGTT_uc003pmt.2_Intron	NM_003800	NP_003791
PARK2	5071	broad.mit.edu	37	6	162956002	162956002	+	Intron	DEL	C	-	-			2011-2338:2012-306-T	g.chr6:162956002delC	uc003qtx.3	-						PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron	NM_004562	NP_004553
ADAP1	11033	broad.mit.edu	37	7	945253	945253	+	Intron	DEL	A	-	-			2011-2338:2012-306-T	g.chr7:945253delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945270	945271	+	Intron	INS	-	G	G			2011-2338:2012-306-T	g.chr7:945270_945271insG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945964	945965	+	Intron	INS	-	A	A			2011-2338:2012-306-T	g.chr7:945964_945965insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946142	946143	+	Intron	DEL	GA	-	-	rs58373074		2011-2338:2012-306-T	g.chr7:946142_946143delGA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982994	982995	+	Intron	INS	-	AGGAT	AGGAT			2011-2338:2012-306-T	g.chr7:982994_982995insAGGAT	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	983010	983012	+	Intron	DEL	GAT	-	-			2011-2338:2012-306-T	g.chr7:983010_983012delGAT	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf50	84310	broad.mit.edu	37	7	1048462	1048464	+	Intron	DEL	ACA	-	-	rs141008276;rs67075637		2011-2338:2012-306-T	g.chr7:1048462_1048464delACA	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
PTPRN2	5799	broad.mit.edu	37	7	157450121	157450122	+	Intron	DEL	CA	-	-			2011-2338:2012-306-T	g.chr7:157450121_157450122delCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158119470	158119473	+	Intron	DEL	CACT	-	-			2011-2338:2012-306-T	g.chr7:158119470_158119473delCACT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
VIPR2	7434	broad.mit.edu	37	7	158912591	158912592	+	Intron	INS	-	C	C			2011-2338:2012-306-T	g.chr7:158912591_158912592insC	uc003woh.2	-						VIPR2_uc010lqx.2_Intron|VIPR2_uc010lqy.2_Intron	NM_003382	NP_003373
ERICH1	157697	broad.mit.edu	37	8	626446	626446	+	Intron	DEL	G	-	-			2011-2338:2012-306-T	g.chr8:626446delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
FAM167A	83648	broad.mit.edu	37	8	11313941	11313942	+	Intron	DEL	GT	-	-			2011-2338:2012-306-T	g.chr8:11313941_11313942delGT	uc003wtw.2	-							NM_053279	NP_444509
CSMD3	114788	broad.mit.edu	37	8	113313985	113313985	+	Intron	DEL	G	-	-			2011-2338:2012-306-T	g.chr8:113313985delG	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
RAPGEF1	2889	broad.mit.edu	37	9	134462397	134462398	+	Intron	DEL	AA	-	-	rs148368834	by1000genomes	2011-2338:2012-306-T	g.chr9:134462397_134462398delAA	uc004cbc.2	-						RAPGEF1_uc004cbb.2_Intron	NM_005312	NP_005303
MAN1B1	11253	broad.mit.edu	37	9	139998175	139998179	+	Intron	DEL	GTTAC	-	-			2011-2338:2012-306-T	g.chr9:139998175_139998179delGTTAC	uc004cld.2	+						MAN1B1_uc011meo.1_Intron|MAN1B1_uc011mep.1_Intron|MAN1B1_uc010ncc.2_Intron|MAN1B1_uc004clf.1_5'UTR|MAN1B1_uc004clg.1_5'Flank	NM_016219	NP_057303
EXD3	54932	broad.mit.edu	37	9	140225004	140225004	+	Intron	DEL	G	-	-			2011-2338:2012-306-T	g.chr9:140225004delG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
LGR6	59352	broad.mit.edu	37	1	202174120	202174121	+	Intron	DEL	AC	-	-			2011-2339:2012-305-T	g.chr1:202174120_202174121delAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
GATA3	2625	broad.mit.edu	37	10	8096706	8096707	+	5'UTR	INS	-	AAA	AAA	rs60098638;rs71977450		2011-2339:2012-305-T	g.chr10:8096706_8096707insAAA	uc001ika.2	+	1					FLJ45983_uc010qbe.1_5'Flank|FLJ45983_uc001ijx.1_5'Flank|FLJ45983_uc010qbf.1_5'Flank|FLJ45983_uc010qbg.1_5'Flank|FLJ45983_uc001ijy.1_5'Flank|GATA3_uc001ijz.2_5'UTR	NM_002051	NP_002042
TSPAN9	10867	broad.mit.edu	37	12	3378418	3378419	+	Intron	INS	-	CA	CA			2011-2339:2012-305-T	g.chr12:3378418_3378419insCA	uc001qlp.2	+							NM_006675	NP_006666
KSR2	283455	broad.mit.edu	37	12	118232272	118232273	+	Intron	DEL	CT	-	-	rs139740958	by1000genomes	2011-2339:2012-305-T	g.chr12:118232272_118232273delCT	uc001two.2	-							NM_173598	NP_775869
TP53	7157	broad.mit.edu	37	17	7579321	7579322	+	Frame_Shift_Del	DEL	CA	-	-			2011-2339:2012-305-T	g.chr17:7579321_7579322delCA	uc002gim.2	-	4	559_560	c.365_366delTG	c.(364-366)GTGfs	p.V122fs	TP53_uc002gig.1_Frame_Shift_Del_p.V122fs|TP53_uc002gih.2_Frame_Shift_Del_p.V122fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Frame_Shift_Del_p.V122fs|TP53_uc010cni.1_Frame_Shift_Del_p.V122fs|TP53_uc002gij.2_Frame_Shift_Del_p.V122fs|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Frame_Shift_Del_p.V83fs|TP53_uc010cnk.1_Frame_Shift_Del_p.V137fs	NM_001126112	NP_001119584
BRCA1	672	broad.mit.edu	37	17	41249168	41249169	+	Intron	INS	-	A	A			2011-2339:2012-305-T	g.chr17:41249168_41249169insA	uc002icq.2	-						BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Intron|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Intron|BRCA1_uc002ict.2_Intron|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Intron|BRCA1_uc002ide.1_Intron|BRCA1_uc010cyy.1_Intron|BRCA1_uc010whs.1_Intron|BRCA1_uc010cyz.2_Intron|BRCA1_uc010cza.2_Intron|BRCA1_uc010wht.1_Intron	NM_007294	NP_009225
SLC38A10	124565	broad.mit.edu	37	17	79223075	79223077	+	Intron	DEL	GAA	-	-			2011-2339:2012-305-T	g.chr17:79223075_79223077delGAA	uc002jzz.1	-						SLC38A10_uc002jzy.1_Intron	NM_001037984	NP_001033073
TGFBR2	7048	broad.mit.edu	37	3	30702786	30702787	+	Intron	DEL	CT	-	-			2011-2339:2012-305-T	g.chr3:30702786_30702787delCT	uc003ceo.2	+						TGFBR2_uc003cen.2_Intron	NM_003242	NP_003233
TET2	54790	broad.mit.edu	37	4	106162487	106162487	+	Intron	DEL	T	-	-			2011-2339:2012-305-T	g.chr4:106162487delT	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron|TET2_uc010ilp.1_Intron|TET2_uc003hxi.1_3'UTR	NM_001127208	NP_001120680
SLC12A7	10723	broad.mit.edu	37	5	1071171	1071171	+	Intron	DEL	G	-	-			2011-2339:2012-305-T	g.chr5:1071171delG	uc003jbu.2	-							NM_006598	NP_006589
PNPLA7	375775	broad.mit.edu	37	9	140413069	140413069	+	Intron	DEL	A	-	-			2011-2339:2012-305-T	g.chr9:140413069delA	uc004cnf.2	-						PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Intron	NM_152286	NP_689499
IDI1	3422	broad.mit.edu	37	10	1092860	1092861	+	Intron	INS	-	CCGT	CCGT			2011-2340:2012-304-T	g.chr10:1092860_1092861insCCGT	uc001iga.2	-						IDI1_uc001ifz.2_5'Flank|IDI1_uc001igb.2_Intron|IDI1_uc001igc.2_Intron|uc001igd.2_5'Flank	NM_004508	NP_004499
CELF2	10659	broad.mit.edu	37	10	11326126	11326127	+	Intron	DEL	GC	-	-	rs144148946	by1000genomes	2011-2340:2012-304-T	g.chr10:11326126_11326127delGC	uc001iki.3	+						CELF2_uc010qbi.1_Intron|CELF2_uc010qbj.1_Intron|CELF2_uc001ikk.2_Intron|CELF2_uc001ikl.3_Intron|CELF2_uc010qbk.1_Intron|CELF2_uc010qbl.1_Intron|CELF2_uc010qbm.1_Intron|CELF2_uc001iko.3_Intron|CELF2_uc001ikp.3_Intron|CELF2_uc010qbn.1_Intron|CELF2_uc010qbo.1_Intron|CELF2_uc010qbp.1_Intron	NM_001025077	NP_001020248
MUC5B	727897	broad.mit.edu	37	11	1153340	1153340	+	Intron	DEL	T	-	-			2011-2340:2012-304-T	g.chr11:1153340delT	uc009ycr.1	+							NM_017511	NP_059981
NTM	50863	broad.mit.edu	37	11	131550452	131550453	+	Intron	INS	-	GTGC	GTGC	rs113062764		2011-2340:2012-304-T	g.chr11:131550452_131550453insGTGC	uc010sci.1	+						NTM_uc001qgm.2_Intron|NTM_uc010sch.1_Intron	NM_001144058	NP_001137530
COL4A2	1284	broad.mit.edu	37	13	111133880	111133880	+	Intron	DEL	T	-	-	rs74198691		2011-2340:2012-304-T	g.chr13:111133880delT	uc001vqx.2	+							NM_001846	NP_001837
CUL4A	8451	broad.mit.edu	37	13	113886701	113886702	+	Intron	DEL	TA	-	-			2011-2340:2012-304-T	g.chr13:113886701_113886702delTA	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc010agu.2_Intron|CUL4A_uc001vtl.1_5'Flank	NM_001008895	NP_001008895
RASA3	22821	broad.mit.edu	37	13	114761573	114761574	+	Intron	INS	-	G	G			2011-2340:2012-304-T	g.chr13:114761573_114761574insG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
PPP4R4	57718	broad.mit.edu	37	14	94684770	94684771	+	Intron	DEL	CA	-	-			2011-2340:2012-304-T	g.chr14:94684770_94684771delCA	uc001ycs.1	+						PPP4R4_uc001ycr.2_Intron	NM_058237	NP_478144
ARNT2	9915	broad.mit.edu	37	15	80736987	80736988	+	Intron	DEL	GC	-	-	rs117857687	by1000genomes	2011-2340:2012-304-T	g.chr15:80736987_80736988delGC	uc002bfr.2	+						ARNT2_uc002bfq.2_Intron|ARNT2_uc010unm.1_Intron|ARNT2_uc002bfs.2_Intron	NM_014862	NP_055677
DPEP1	1800	broad.mit.edu	37	16	89701300	89701300	+	Intron	DEL	T	-	-			2011-2340:2012-304-T	g.chr16:89701300delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
CLEC10A	10462	broad.mit.edu	37	17	6980599	6980599	+	Intron	DEL	C	-	-			2011-2340:2012-304-T	g.chr17:6980599delC	uc002gek.2	-						CLEC10A_uc002gej.2_Intron|CLEC10A_uc002gel.2_Intron|CLEC10A_uc010clv.1_Intron	NM_182906	NP_878910
HDAC4	9759	broad.mit.edu	37	2	240106534	240106535	+	Intron	DEL	GT	-	-	rs66594103		2011-2340:2012-304-T	g.chr2:240106534_240106535delGT	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc010fyy.2_Intron	NM_006037	NP_006028
PTK6	5753	broad.mit.edu	37	20	62163515	62163516	+	Intron	DEL	TG	-	-			2011-2340:2012-304-T	g.chr20:62163515_62163516delTG	uc002yfg.2	-						PTK6_uc011aay.1_Intron|PTK6_uc011aaz.1_Intron	NM_005975	NP_005966
EP300	2033	broad.mit.edu	37	22	41566463	41566465	+	In_Frame_Del	DEL	TCT	-	-	rs113856266		2011-2340:2012-304-T	g.chr22:41566463_41566465delTCT	uc003azl.3	+	27	4735_4737	c.4340_4342delTCT	c.(4339-4344)ATCTTC>ATC	p.F1448del		NM_001429	NP_001420
TBC1D22A	25771	broad.mit.edu	37	22	47302975	47302976	+	Intron	INS	-	TG	TG	rs141246403;rs35513170	by1000genomes	2011-2340:2012-304-T	g.chr22:47302975_47302976insTG	uc003bib.2	+						TBC1D22A_uc010haf.2_Intron|TBC1D22A_uc003bic.2_Intron|TBC1D22A_uc003bie.2_Intron|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_Intron|TBC1D22A_uc003bif.2_Intron	NM_014346	NP_055161
PRSS38	339501	broad.mit.edu	37	1	228032211	228032213	+	Intron	DEL	CTT	-	-			2011-2341:2012-303-T	g.chr1:228032211_228032213delCTT	uc001hrh.2	+							NM_183062	NP_898885
ODF3	113746	broad.mit.edu	37	11	196148	196149	+	5'Flank	DEL	GA	-	-			2011-2341:2012-303-T	g.chr11:196148_196149delGA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
NUMA1	4926	broad.mit.edu	37	11	71719801	71719801	+	Frame_Shift_Del	DEL	G	-	-			2011-2341:2012-303-T	g.chr11:71719801delG	uc001orl.1	-	20	5321	c.5149delC	c.(5149-5151)CAGfs	p.Q1717fs	NUMA1_uc001orj.2_5'UTR|NUMA1_uc009ysw.1_Frame_Shift_Del_p.Q1266fs|NUMA1_uc001ork.1_Frame_Shift_Del_p.Q581fs|NUMA1_uc001orm.1_Frame_Shift_Del_p.Q1703fs|NUMA1_uc001orn.2_Frame_Shift_Del_p.Q1280fs	NM_006185	NP_006176
NCOR2	9612	broad.mit.edu	37	12	124916419	124916420	+	Intron	DEL	AC	-	-			2011-2341:2012-303-T	g.chr12:124916419_124916420delAC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
RIMBP2	23504	broad.mit.edu	37	12	131068893	131068894	+	Intron	INS	-	A	A			2011-2341:2012-303-T	g.chr12:131068893_131068894insA	uc001uim.2	-								
RIMBP2	23504	broad.mit.edu	37	12	131068897	131068898	+	Intron	INS	-	CT	CT			2011-2341:2012-303-T	g.chr12:131068897_131068898insCT	uc001uim.2	-								
DPEP1	1800	broad.mit.edu	37	16	89701347	89701347	+	Intron	DEL	T	-	-			2011-2341:2012-303-T	g.chr16:89701347delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701433	89701433	+	Intron	DEL	C	-	-			2011-2341:2012-303-T	g.chr16:89701433delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
IFT122	55764	broad.mit.edu	37	3	129236112	129236115	+	Intron	DEL	CACA	-	-	rs146861755;rs9855705	by1000genomes	2011-2341:2012-303-T	g.chr3:129236112_129236115delCACA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
PIK3CB	5291	broad.mit.edu	37	3	138384053	138384054	+	Intron	INS	-	A	A			2011-2341:2012-303-T	g.chr3:138384053_138384054insA	uc011bmq.1	-						PIK3CB_uc011bmn.1_Intron|PIK3CB_uc011bmo.1_Intron|PIK3CB_uc011bmp.1_Intron	NM_006219	NP_006210
BST1	683	broad.mit.edu	37	4	15705319	15705320	+	Intron	INS	-	GG	GG			2011-2341:2012-303-T	g.chr4:15705319_15705320insGG	uc003goh.3	+							NM_004334	NP_004325
ICA1	3382	broad.mit.edu	37	7	8192521	8192522	+	Intron	DEL	TA	-	-	rs78937210		2011-2341:2012-303-T	g.chr7:8192521_8192522delTA	uc003srm.2	-						ICA1_uc010ktr.2_Intron|ICA1_uc003srl.2_Intron|ICA1_uc003srn.3_Intron|ICA1_uc003srp.3_Intron|ICA1_uc010kts.2_Intron|ICA1_uc003srq.2_Intron|ICA1_uc003srr.2_Intron|ICA1_uc003sro.3_Intron	NM_022307	NP_071682
ASH1L	55870	broad.mit.edu	37	1	155327042	155327045	+	Intron	DEL	TTTT	-	-			2011-2342:2012-302-T	g.chr1:155327042_155327045delTTTT	uc009wqq.2	-						RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Intron	NM_018489	NP_060959
CALY	50632	broad.mit.edu	37	10	135147763	135147763	+	Intron	DEL	G	-	-			2011-2342:2012-302-T	g.chr10:135147763delG	uc001lmo.2	-							NM_015722	NP_056537
TRAF3	7187	broad.mit.edu	37	14	103336643	103336653	+	Frame_Shift_Del	DEL	ACAAGGAGGTT	-	-			2011-2342:2012-302-T	g.chr14:103336643_103336653delACAAGGAGGTT	uc001ymc.1	+	3	458_468	c.105_115delACAAGGAGGTT	c.(103-117)GAACAAGGAGGTTACfs	p.E35fs	TRAF3_uc001yme.1_Frame_Shift_Del_p.E35fs|TRAF3_uc001ymd.1_Frame_Shift_Del_p.E35fs|TRAF3_uc010txy.1_Frame_Shift_Del_p.E35fs	NM_145725	NP_663777
ADAMTS17	170691	broad.mit.edu	37	15	100598506	100598507	+	Intron	INS	-	T	T	rs150896439;rs68090700	by1000genomes	2011-2342:2012-302-T	g.chr15:100598506_100598507insT	uc002bvv.1	-							NM_139057	NP_620688
CYLD	1540	broad.mit.edu	37	16	50820433	50820434	+	Intron	INS	-	GCCGAGGT	GCCGAGGT	rs144289265;rs149194721	by1000genomes	2011-2342:2012-302-T	g.chr16:50820433_50820434insGCCGAGGT	uc002egp.1	+						CYLD_uc002ego.2_3'UTR|CYLD_uc010cbs.1_Intron|CYLD_uc002egq.1_Intron|CYLD_uc002egr.1_Intron|CYLD_uc002egs.1_Intron	NM_015247	NP_056062
DPEP1	1800	broad.mit.edu	37	16	89701226	89701226	+	Intron	DEL	C	-	-			2011-2342:2012-302-T	g.chr16:89701226delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
NLRP1	22861	broad.mit.edu	37	17	5448861	5448862	+	Intron	INS	-	AG	AG			2011-2342:2012-302-T	g.chr17:5448861_5448862insAG	uc002gci.2	-						NLRP1_uc002gcg.1_Intron|NLRP1_uc002gck.2_Intron|NLRP1_uc002gcj.2_Intron|NLRP1_uc002gcl.2_Intron|NLRP1_uc002gch.3_Intron|NLRP1_uc010clh.2_Intron	NM_033004	NP_127497
PIK3C3	5289	broad.mit.edu	37	18	39570410	39570410	+	Intron	DEL	T	-	-			2011-2342:2012-302-T	g.chr18:39570410delT	uc002lap.2	+						PIK3C3_uc010xcl.1_Intron	NM_002647	NP_002638
TBC1D22A	25771	broad.mit.edu	37	22	47554663	47554664	+	Intron	DEL	AC	-	-			2011-2342:2012-302-T	g.chr22:47554663_47554664delAC	uc003bib.2	+						TBC1D22A_uc010haf.2_Intron|TBC1D22A_uc003bic.2_Intron|TBC1D22A_uc003bie.2_Intron|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_Intron|TBC1D22A_uc003bif.2_Intron	NM_014346	NP_055161
ADAMTS16	170690	broad.mit.edu	37	5	5305194	5305195	+	Intron	DEL	AT	-	-			2011-2342:2012-302-T	g.chr5:5305194_5305195delAT	uc003jdl.2	+							NM_139056	NP_620687
ADAP1	11033	broad.mit.edu	37	7	982037	982040	+	Intron	DEL	GAGA	-	-			2011-2342:2012-302-T	g.chr7:982037_982040delGAGA	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	982108	982109	+	Intron	INS	-	GAGT	GAGT			2011-2342:2012-302-T	g.chr7:982108_982109insGAGT	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	157777143	157777144	+	Intron	INS	-	A	A			2011-2342:2012-302-T	g.chr7:157777143_157777144insA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
RALGDS	5900	broad.mit.edu	37	9	135999111	135999112	+	5'Flank	DEL	AG	-	-	rs141118433		2011-2342:2012-302-T	g.chr9:135999111_135999112delAG	uc004cco.2	-						RALGDS_uc004ccp.2_5'Flank|RALGDS_uc004ccq.2_5'Flank|RALGDS_uc004ccr.2_Intron|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Intron|RALGDS_uc011mcw.1_Intron	NM_006266	NP_006257
FLG2	388698	broad.mit.edu	37	1	152326321	152326322	+	Frame_Shift_Ins	INS	-	TA	TA	rs150792575		2011-2343:2012-334-T	g.chr1:152326321_152326322insTA	uc001ezw.3	-	3	4013_4014	c.3940_3941insTA	c.(3940-3942)ACTfs	p.T1314fs	uc001ezv.2_Intron	NM_001014342	NP_001014364
DEAF1	10522	broad.mit.edu	37	11	676136	676137	+	Intron	INS	-	T	T			2011-2343:2012-334-T	g.chr11:676136_676137insT	uc001lqq.1	-						DEAF1_uc009ycf.1_Intron	NM_021008	NP_066288
TMEM120B	144404	broad.mit.edu	37	12	122186011	122186012	+	Intron	INS	-	CA	CA	rs112015409		2011-2343:2012-334-T	g.chr12:122186011_122186012insCA	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
RASA3	22821	broad.mit.edu	37	13	114749639	114749640	+	Intron	INS	-	TG	TG	rs71105221;rs78489013		2011-2343:2012-334-T	g.chr13:114749639_114749640insTG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
ADAMTS17	170691	broad.mit.edu	37	15	100598546	100598547	+	Intron	INS	-	T	T			2011-2343:2012-334-T	g.chr15:100598546_100598547insT	uc002bvv.1	-							NM_139057	NP_620688
DPEP1	1800	broad.mit.edu	37	16	89701210	89701210	+	Intron	DEL	C	-	-			2011-2343:2012-334-T	g.chr16:89701210delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
TP53	7157	broad.mit.edu	37	17	7577558	7577558	+	Frame_Shift_Del	DEL	G	-	-			2011-2343:2012-334-T	g.chr17:7577558delG	uc002gim.2	-	7	917	c.723delC	c.(721-723)TCCfs	p.S241fs	TP53_uc002gig.1_Frame_Shift_Del_p.S241fs|TP53_uc002gih.2_Frame_Shift_Del_p.S241fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.S109fs|TP53_uc010cng.1_Frame_Shift_Del_p.S109fs|TP53_uc002gii.1_Frame_Shift_Del_p.S109fs|TP53_uc010cnh.1_Frame_Shift_Del_p.S241fs|TP53_uc010cni.1_Frame_Shift_Del_p.S241fs|TP53_uc002gij.2_Frame_Shift_Del_p.S241fs|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Frame_Shift_Del_p.S148fs|TP53_uc002gio.2_Frame_Shift_Del_p.S109fs	NM_001126112	NP_001119584
BAGE2	85319	broad.mit.edu	37	21	11097726	11097726	+	Intron	DEL	G	-	-			2011-2343:2012-334-T	g.chr21:11097726delG	uc002yit.1	-						BAGE_uc002yix.2_Intron	NM_182482	NP_872288
FAT1	2195	broad.mit.edu	37	4	187540206	187540206	+	Frame_Shift_Del	DEL	T	-	-			2011-2343:2012-334-T	g.chr4:187540206delT	uc003izf.2	-	10	7722	c.7534delA	c.(7534-7536)ATGfs	p.M2512fs		NM_005245	NP_005236
SLC12A7	10723	broad.mit.edu	37	5	1070488	1070489	+	Intron	INS	-	G	G	rs71887531		2011-2343:2012-334-T	g.chr5:1070488_1070489insG	uc003jbu.2	-							NM_006598	NP_006589
CDH9	1007	broad.mit.edu	37	5	26885764	26885764	+	Frame_Shift_Del	DEL	C	-	-			2011-2343:2012-334-T	g.chr5:26885764delC	uc003jgs.1	-	11	2010	c.1841delG	c.(1840-1842)GGAfs	p.G614fs	CDH9_uc011cnv.1_Frame_Shift_Del_p.G207fs	NM_016279	NP_057363
SLCO4C1	353189	broad.mit.edu	37	5	101632502	101632503	+	5'Flank	INS	-	T	T	rs144652795;rs35220083	by1000genomes	2011-2343:2012-334-T	g.chr5:101632502_101632503insT	uc003knm.2	-							NM_180991	NP_851322
IKBKAP	8518	broad.mit.edu	37	9	111663156	111663157	+	Intron	DEL	CA	-	-			2011-2343:2012-334-T	g.chr9:111663156_111663157delCA	uc004bdm.3	-						IKBKAP_uc004bdl.2_Intron|IKBKAP_uc011lwc.1_Intron|IKBKAP_uc010mtq.2_Intron	NM_003640	NP_003631
TTF1	7270	broad.mit.edu	37	9	135253160	135253163	+	Intron	DEL	GTGT	-	-	rs145026062	by1000genomes	2011-2343:2012-334-T	g.chr9:135253160_135253163delGTGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
AGRN	375790	broad.mit.edu	37	1	965641	965642	+	Intron	DEL	GT	-	-			2011-2344:2012-333-T	g.chr1:965641_965642delGT	uc001ack.1	+							NM_198576	NP_940978
MGMT	4255	broad.mit.edu	37	10	131348713	131348713	+	Intron	DEL	T	-	-	rs58863411		2011-2344:2012-333-T	g.chr10:131348713delT	uc001lkh.2	+							NM_002412	NP_002403
PDE3A	5139	broad.mit.edu	37	12	20782922	20782922	+	Frame_Shift_Del	DEL	A	-	-			2011-2344:2012-333-T	g.chr12:20782922delA	uc001reh.1	+	6	1643	c.1621delA	c.(1621-1623)AAAfs	p.K541fs		NM_000921	NP_000912
SNX29	92017	broad.mit.edu	37	16	12416734	12416735	+	Intron	DEL	GG	-	-	rs5815682		2011-2344:2012-333-T	g.chr16:12416734_12416735delGG	uc002dby.3	+							NM_001080530	NP_001073999
SNX29	92017	broad.mit.edu	37	16	12416737	12416742	+	Intron	DEL	GTCACT	-	-	rs5815683;rs62039970	by1000genomes	2011-2344:2012-333-T	g.chr16:12416737_12416742delGTCACT	uc002dby.3	+							NM_001080530	NP_001073999
CDH15	1013	broad.mit.edu	37	16	89255592	89255593	+	Intron	DEL	CA	-	-			2011-2344:2012-333-T	g.chr16:89255592_89255593delCA	uc002fmt.2	+							NM_004933	NP_004924
DPEP1	1800	broad.mit.edu	37	16	89701352	89701353	+	Intron	INS	-	C	C			2011-2344:2012-333-T	g.chr16:89701352_89701353insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
KIAA1468	57614	broad.mit.edu	37	18	59894429	59894429	+	Intron	DEL	A	-	-	rs35190394		2011-2344:2012-333-T	g.chr18:59894429delA	uc002lil.2	+						KIAA1468_uc002lik.1_Intron|KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905
DNM2	1785	broad.mit.edu	37	19	10869000	10869007	+	Intron	DEL	TCCCTCCT	-	-	rs74180167;rs140922946	by1000genomes	2011-2344:2012-333-T	g.chr19:10869000_10869007delTCCCTCCT	uc002mps.1	+						DNM2_uc010dxk.2_Intron|DNM2_uc002mpt.1_Intron|DNM2_uc002mpv.1_Intron|DNM2_uc002mpu.1_Intron|DNM2_uc010dxl.1_Intron	NM_001005361	NP_001005361
CLTCL1	8218	broad.mit.edu	37	22	19189983	19189984	+	Intron	INS	-	C	C	rs12172332	by1000genomes	2011-2344:2012-333-T	g.chr22:19189983_19189984insC	uc002zpb.2	-						CLTCL1_uc011agv.1_Intron|CLTCL1_uc011agw.1_Intron|CLTCL1_uc011agt.1_Intron|CLTCL1_uc011agu.1_Intron|CLTCL1_uc010grm.1_Intron|CLTCL1_uc002zpe.2_Intron|CLTCL1_uc002zpd.1_Intron	NM_007098	NP_009029
MUC21	394263	broad.mit.edu	37	6	30955157	30955157	+	Frame_Shift_Del	DEL	C	-	-	rs55808305		2011-2344:2012-333-T	g.chr6:30955157delC	uc003nsh.2	+	2	1456	c.1205delC	c.(1204-1206)GCCfs	p.A402fs	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909
SMOC2	64094	broad.mit.edu	37	6	168999870	168999871	+	Intron	DEL	CT	-	-	rs111326284;rs116042779		2011-2344:2012-333-T	g.chr6:168999870_168999871delCT	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
PTPRN2	5799	broad.mit.edu	37	7	158129924	158129925	+	Intron	DEL	CA	-	-	rs66592921		2011-2344:2012-333-T	g.chr7:158129924_158129925delCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1781229	1781229	+	Intron	DEL	C	-	-			2011-2344:2012-333-T	g.chr8:1781229delC	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
MFSD2A	84879	broad.mit.edu	37	1	40430472	40430473	+	Intron	DEL	GT	-	-			2011-2345:2012-332-T	g.chr1:40430472_40430473delGT	uc001cev.2	+						MFSD2A_uc010ojb.1_Intron|MFSD2A_uc001ceu.2_Intron|MFSD2A_uc010ojc.1_Intron|MFSD2A_uc009vvy.2_Intron|MFSD2A_uc001cex.2_5'Flank	NM_001136493	NP_001129965
PPP4R4	57718	broad.mit.edu	37	14	94684921	94684922	+	Intron	DEL	CA	-	-			2011-2345:2012-332-T	g.chr14:94684921_94684922delCA	uc001ycs.1	+						PPP4R4_uc001ycr.2_Intron	NM_058237	NP_478144
NOTCH3	4854	broad.mit.edu	37	19	15273598	15273605	+	Intron	DEL	GTGTGTGC	-	-	rs4019573;rs757473	by1000genomes	2011-2345:2012-332-T	g.chr19:15273598_15273605delGTGTGTGC	uc002nan.2	-							NM_000435	NP_000426
JPH2	57158	broad.mit.edu	37	20	42817085	42817086	+	5'Flank	DEL	GA	-	-	rs11469916		2011-2345:2012-332-T	g.chr20:42817085_42817086delGA	uc002xli.1	-						JPH2_uc002xlj.2_5'Flank	NM_020433	NP_065166
CHST13	166012	broad.mit.edu	37	3	126258803	126258804	+	Intron	DEL	CA	-	-			2011-2345:2012-332-T	g.chr3:126258803_126258804delCA	uc003eja.2	+							NM_152889	NP_690849
SLC12A7	10723	broad.mit.edu	37	5	1071550	1071550	+	Intron	DEL	G	-	-			2011-2345:2012-332-T	g.chr5:1071550delG	uc003jbu.2	-							NM_006598	NP_006589
ARHGEF10	9639	broad.mit.edu	37	8	1781220	1781221	+	Intron	DEL	AG	-	-			2011-2345:2012-332-T	g.chr8:1781220_1781221delAG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
FAM167A	83648	broad.mit.edu	37	8	11313757	11313757	+	Intron	DEL	C	-	-			2011-2345:2012-332-T	g.chr8:11313757delC	uc003wtw.2	-							NM_053279	NP_444509
LGR6	59352	broad.mit.edu	37	1	202174525	202174526	+	Intron	INS	-	AC	AC			2011-2346:2012-301-T	g.chr1:202174525_202174526insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LMF1	64788	broad.mit.edu	37	16	1003291	1003292	+	Intron	INS	-	CACT	CACT	rs72419565;rs72343478		2011-2346:2012-301-T	g.chr16:1003291_1003292insCACT	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
ABR	29	broad.mit.edu	37	17	1022549	1022549	+	Intron	DEL	T	-	-			2011-2346:2012-301-T	g.chr17:1022549delT	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
SBNO2	22904	broad.mit.edu	37	19	1164401	1164402	+	Intron	INS	-	AAC	AAC			2011-2346:2012-301-T	g.chr19:1164401_1164402insAAC	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
SBNO2	22904	broad.mit.edu	37	19	1166230	1166231	+	Intron	INS	-	T	T	rs150401110;rs66492416		2011-2346:2012-301-T	g.chr19:1166230_1166231insT	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
CACNG7	59284	broad.mit.edu	37	19	54426803	54426804	+	Intron	INS	-	C	C	rs75235402		2011-2346:2012-301-T	g.chr19:54426803_54426804insC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
MUSTN1	389125	broad.mit.edu	37	3	52866767	52866767	+	Intron	DEL	T	-	-	rs11313923		2011-2346:2012-301-T	g.chr3:52866767delT	uc010hmq.1	-						ITIH4_uc011bem.1_5'Flank|ITIH4_uc011ben.1_5'Flank|ITIH4_uc003dfz.2_5'Flank|ITIH4_uc010hmp.1_5'Flank		
AHRR	57491	broad.mit.edu	37	5	345451	345452	+	Intron	DEL	AT	-	-	rs148960070	by1000genomes	2011-2346:2012-301-T	g.chr5:345451_345452delAT	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
CLPTM1L	81037	broad.mit.edu	37	5	1333691	1333691	+	Intron	DEL	A	-	-	rs67002607		2011-2346:2012-301-T	g.chr5:1333691delA	uc003jch.2	-						CLPTM1L_uc003jcg.2_Intron	NM_030782	NP_110409
ADAP1	11033	broad.mit.edu	37	7	945391	945391	+	Intron	DEL	G	-	-	rs143642586	by1000genomes	2011-2346:2012-301-T	g.chr7:945391delG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PRDM16	63976	broad.mit.edu	37	1	3030786	3030791	+	Intron	DEL	CACACG	-	-	rs57351984		2011-2347:2012-300-T	g.chr1:3030786_3030791delCACACG	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
LGR6	59352	broad.mit.edu	37	1	202174498	202174509	+	Intron	DEL	ACACACACACCT	-	-	rs150017503;rs141873830;rs138471820		2011-2347:2012-300-T	g.chr1:202174498_202174509delACACACACACCT	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174525	202174526	+	Intron	INS	-	AC	AC			2011-2347:2012-300-T	g.chr1:202174525_202174526insAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
CCDC6	8030	broad.mit.edu	37	10	61641988	61641993	+	Intron	DEL	GAAAGT	-	-			2011-2347:2012-300-T	g.chr10:61641988_61641993delGAAAGT	uc001jks.3	-							NM_005436	NP_005427
ADAM12	8038	broad.mit.edu	37	10	127846821	127846822	+	Intron	INS	-	GG	GG			2011-2347:2012-300-T	g.chr10:127846821_127846822insGG	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
TMEM132B	114795	broad.mit.edu	37	12	125894988	125894988	+	Intron	DEL	T	-	-			2011-2347:2012-300-T	g.chr12:125894988delT	uc001uhe.1	+							NM_052907	NP_443139
GRK1	6011	broad.mit.edu	37	13	114431194	114431196	+	Intron	DEL	AGT	-	-			2011-2347:2012-300-T	g.chr13:114431194_114431196delAGT	uc010tkf.1	+							NM_002929	NP_002920
ZC3H14	79882	broad.mit.edu	37	14	89073924	89073924	+	Intron	DEL	A	-	-			2011-2347:2012-300-T	g.chr14:89073924delA	uc001xww.2	+						ZC3H14_uc010twd.1_Intron|ZC3H14_uc010twe.1_Intron|ZC3H14_uc001xwx.2_Intron|ZC3H14_uc010twf.1_Intron|ZC3H14_uc001xwy.2_Intron|ZC3H14_uc010twg.1_Intron|ZC3H14_uc001xxa.2_Intron|ZC3H14_uc001xxc.2_Intron|ZC3H14_uc001xxb.2_Intron	NM_024824	NP_079100
CMIP	80790	broad.mit.edu	37	16	81702723	81702723	+	Intron	DEL	A	-	-			2011-2347:2012-300-T	g.chr16:81702723delA	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
CMIP	80790	broad.mit.edu	37	16	81702725	81702727	+	Intron	DEL	TCA	-	-	rs71656528		2011-2347:2012-300-T	g.chr16:81702725_81702727delTCA	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
DPEP1	1800	broad.mit.edu	37	16	89701123	89701124	+	Intron	INS	-	T	T			2011-2347:2012-300-T	g.chr16:89701123_89701124insT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701128	89701129	+	Intron	INS	-	C	C			2011-2347:2012-300-T	g.chr16:89701128_89701129insC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
COL5A2	1290	broad.mit.edu	37	2	190041496	190041497	+	Intron	DEL	CA	-	-			2011-2347:2012-300-T	g.chr2:190041496_190041497delCA	uc002uqk.2	-							NM_000393	NP_000384
PRPF6	24148	broad.mit.edu	37	20	62653088	62653089	+	Intron	DEL	GT	-	-			2011-2347:2012-300-T	g.chr20:62653088_62653089delGT	uc002yho.2	+						PRPF6_uc002yhp.2_Intron	NM_012469	NP_036601
PCBP3	54039	broad.mit.edu	37	21	47235352	47235352	+	Intron	DEL	G	-	-			2011-2347:2012-300-T	g.chr21:47235352delG	uc010gqb.2	+							NM_020528	NP_065389
ADAP1	11033	broad.mit.edu	37	7	982889	982892	+	Intron	DEL	AGGG	-	-			2011-2347:2012-300-T	g.chr7:982889_982892delAGGG	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	158153257	158153258	+	Intron	INS	-	G	G			2011-2347:2012-300-T	g.chr7:158153257_158153258insG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
FAM9A	171482	broad.mit.edu	37	X	8763346	8763348	+	In_Frame_Del	DEL	CTG	-	-			2011-2347:2012-300-T	g.chrX:8763346_8763348delCTG	uc004csg.2	-	7	713_715	c.602_604delCAG	c.(601-606)GCAGAA>GAA	p.A201del		NM_174951	NP_777611
AGRN	375790	broad.mit.edu	37	1	965052	965057	+	Intron	DEL	TGTGTG	-	-	rs36212580;rs140315748;rs138003074		2011-2348:2012-331-T	g.chr1:965052_965057delTGTGTG	uc001ack.1	+							NM_198576	NP_940978
FAIM3	9214	broad.mit.edu	37	1	207097912	207097913	+	5'Flank	DEL	GT	-	-			2011-2348:2012-331-T	g.chr1:207097912_207097913delGT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
CABC1	56997	broad.mit.edu	37	1	227148252	227148257	+	Intron	DEL	GTGTCA	-	-	rs144702160	by1000genomes	2011-2348:2012-331-T	g.chr1:227148252_227148257delGTGTCA	uc001hqm.1	+						CABC1_uc010pvp.1_Intron|CABC1_uc001hqn.1_Intron|CABC1_uc009xeq.1_Intron|CABC1_uc010pvq.1_Intron	NM_020247	NP_064632
AKT3	10000	broad.mit.edu	37	1	244006807	244006807	+	5'Flank	DEL	T	-	-			2011-2348:2012-331-T	g.chr1:244006807delT	uc001iab.1	-						AKT3_uc001hzz.1_5'Flank	NM_005465	NP_005456
CNST	163882	broad.mit.edu	37	1	246783794	246783795	+	Intron	DEL	TC	-	-			2011-2348:2012-331-T	g.chr1:246783794_246783795delTC	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
ANXA8	653145	broad.mit.edu	37	10	47058971	47058972	+	Intron	INS	-	CA	CA	rs144230274		2011-2348:2012-331-T	g.chr10:47058971_47058972insCA	uc001jed.3	-								
C10orf72	196740	broad.mit.edu	37	10	50313008	50313009	+	Intron	DEL	AG	-	-			2011-2348:2012-331-T	g.chr10:50313008_50313009delAG	uc001jhf.2	-						C10orf72_uc001jhh.2_Intron	NM_001031746	NP_001026916
MUC5B	727897	broad.mit.edu	37	11	1160347	1160347	+	Intron	DEL	T	-	-	rs78703866	by1000genomes	2011-2348:2012-331-T	g.chr11:1160347delT	uc009ycr.1	+							NM_017511	NP_059981
SHANK2	22941	broad.mit.edu	37	11	70835220	70835222	+	Intron	DEL	TGA	-	-			2011-2348:2012-331-T	g.chr11:70835220_70835222delTGA	uc001oqc.2	-							NM_012309	NP_036441
MLL2	8085	broad.mit.edu	37	12	49426485	49426486	+	Frame_Shift_Ins	INS	-	A	A			2011-2348:2012-331-T	g.chr12:49426485_49426486insA	uc001rta.3	-	39	12002_12003	c.12002_12003insT	c.(12001-12003)ATGfs	p.M4001fs		NM_003482	NP_003473
NCOR2	9612	broad.mit.edu	37	12	124952687	124952688	+	Intron	INS	-	CCC	CCC			2011-2348:2012-331-T	g.chr12:124952687_124952688insCCC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
GALNT9	50614	broad.mit.edu	37	12	132893512	132893513	+	Intron	INS	-	CACCCTATGGAGCACGGTCC	CACCCTATGGAGCACGGTCC			2011-2348:2012-331-T	g.chr12:132893512_132893513insCACCCTATGGAGCACGGTCC	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
RB1	5925	broad.mit.edu	37	13	49034111	49034111	+	Intron	DEL	C	-	-			2011-2348:2012-331-T	g.chr13:49034111delC	uc001vcb.2	+							NM_000321	NP_000312
RB1	5925	broad.mit.edu	37	13	49034115	49034115	+	Intron	DEL	C	-	-	rs56388055		2011-2348:2012-331-T	g.chr13:49034115delC	uc001vcb.2	+							NM_000321	NP_000312
RASA3	22821	broad.mit.edu	37	13	114749464	114749465	+	Intron	INS	-	TG	TG	rs145362368;rs66671611		2011-2348:2012-331-T	g.chr13:114749464_114749465insTG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron	NM_007368	NP_031394
TRAF3	7187	broad.mit.edu	37	14	103357624	103357630	+	Intron	DEL	CGAGGTT	-	-			2011-2348:2012-331-T	g.chr14:103357624_103357630delCGAGGTT	uc001ymc.1	+						TRAF3_uc001yme.1_Intron|TRAF3_uc001ymd.1_Intron|TRAF3_uc010txy.1_Intron	NM_145725	NP_663777
DPEP1	1800	broad.mit.edu	37	16	89700997	89700997	+	Intron	DEL	T	-	-			2011-2348:2012-331-T	g.chr16:89700997delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
NOTCH3	4854	broad.mit.edu	37	19	15273600	15273605	+	Intron	DEL	GTGTGC	-	-	rs4019573;rs757473	by1000genomes	2011-2348:2012-331-T	g.chr19:15273600_15273605delGTGTGC	uc002nan.2	-							NM_000435	NP_000426
BIN1	274	broad.mit.edu	37	2	127833331	127833332	+	Intron	INS	-	C	C			2011-2348:2012-331-T	g.chr2:127833331_127833332insC	uc002tns.1	-						BIN1_uc010yzf.1_Intron|BIN1_uc010yzg.1_Intron|BIN1_uc002tnu.1_Intron|BIN1_uc002toa.1_Intron|BIN1_uc002tnt.1_Intron|BIN1_uc002tnv.1_Intron|BIN1_uc002tnw.1_Intron|BIN1_uc002tnx.1_Intron|BIN1_uc002tny.1_Intron|BIN1_uc002tnz.1_Intron|BIN1_uc002tob.1_Intron|BIN1_uc002toc.1_Intron	NM_139343	NP_647593
NFE2L2	4780	broad.mit.edu	37	2	178215773	178215774	+	Intron	DEL	GA	-	-			2011-2348:2012-331-T	g.chr2:178215773_178215774delGA	uc002uli.3	-						LOC100130691_uc002ulk.1_Intron	NM_001145412	NP_001138884
TTN	7273	broad.mit.edu	37	2	179419247	179419248	+	Frame_Shift_Ins	INS	-	C	C			2011-2348:2012-331-T	g.chr2:179419247_179419248insC	uc010zfg.1	-	281	81346_81347	c.81122_81123insG	c.(81121-81123)CGAfs	p.R27041fs	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Frame_Shift_Ins_p.R20736fs|TTN_uc010zfi.1_Frame_Shift_Ins_p.R20669fs|TTN_uc010zfj.1_Frame_Shift_Ins_p.R20544fs	NM_133378	NP_596869
PTK6	5753	broad.mit.edu	37	20	62163515	62163516	+	Intron	DEL	TG	-	-			2011-2348:2012-331-T	g.chr20:62163515_62163516delTG	uc002yfg.2	-						PTK6_uc011aay.1_Intron|PTK6_uc011aaz.1_Intron	NM_005975	NP_005966
EP300	2033	broad.mit.edu	37	22	41545113	41545114	+	Frame_Shift_Ins	INS	-	T	T			2011-2348:2012-331-T	g.chr22:41545113_41545114insT	uc003azl.3	+	13	2708_2709	c.2313_2314insT	c.(2311-2316)CCATCAfs	p.P771fs		NM_001429	NP_001420
SENP5	205564	broad.mit.edu	37	3	196625647	196625648	+	Intron	DEL	TC	-	-			2011-2348:2012-331-T	g.chr3:196625647_196625648delTC	uc003fwz.3	+						SENP5_uc011bty.1_Intron	NM_152699	NP_689912
AHRR	57491	broad.mit.edu	37	5	344826	344827	+	Intron	INS	-	GG	GG			2011-2348:2012-331-T	g.chr5:344826_344827insGG	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
AHRR	57491	broad.mit.edu	37	5	345451	345452	+	Intron	DEL	AT	-	-	rs148960070	by1000genomes	2011-2348:2012-331-T	g.chr5:345451_345452delAT	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
CEP72	55722	broad.mit.edu	37	5	651349	651360	+	Intron	DEL	GACTGAGGCGTG	-	-	rs72345438;rs67567306;rs71855444		2011-2348:2012-331-T	g.chr5:651349_651360delGACTGAGGCGTG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1071445	1071445	+	Intron	DEL	C	-	-			2011-2348:2012-331-T	g.chr5:1071445delC	uc003jbu.2	-							NM_006598	NP_006589
ADAMTS2	9509	broad.mit.edu	37	5	178650393	178650394	+	Intron	INS	-	CA	CA	rs145010604;rs139623797	by1000genomes	2011-2348:2012-331-T	g.chr5:178650393_178650394insCA	uc003mjw.2	-						ADAMTS2_uc011dgm.1_Intron	NM_014244	NP_055059
SYNE1	23345	broad.mit.edu	37	6	152685873	152685873	+	Intron	DEL	A	-	-			2011-2348:2012-331-T	g.chr6:152685873delA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
ADAP1	11033	broad.mit.edu	37	7	982994	982995	+	Intron	INS	-	AGGAT	AGGAT			2011-2348:2012-331-T	g.chr7:982994_982995insAGGAT	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	983010	983012	+	Intron	DEL	GAT	-	-			2011-2348:2012-331-T	g.chr7:983010_983012delGAT	uc003sjo.3	-						ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
AUTS2	26053	broad.mit.edu	37	7	69961748	69961749	+	Intron	INS	-	CACA	CACA			2011-2348:2012-331-T	g.chr7:69961748_69961749insCACA	uc003tvw.3	+						AUTS2_uc003tvx.3_Intron	NM_015570	NP_056385
NACC2	138151	broad.mit.edu	37	9	138916002	138916007	+	Intron	DEL	GTGTGT	-	-	rs71507095		2011-2348:2012-331-T	g.chr9:138916002_138916007delGTGTGT	uc004cgw.2	-						NACC2_uc010nbh.2_Intron	NM_144653	NP_653254
OPHN1	4983	broad.mit.edu	37	X	67459062	67459062	+	Intron	DEL	G	-	-	rs67901004		2011-2348:2012-331-T	g.chrX:67459062delG	uc004dww.3	-						OPHN1_uc011mpg.1_Intron|OPHN1_uc004dwx.2_Intron	NM_002547	NP_002538
SYT2	127833	broad.mit.edu	37	1	202594067	202594068	+	Intron	INS	-	C	C	rs148638021		2011-2349:2012-299-T	g.chr1:202594067_202594068insC	uc001gye.2	-						SYT2_uc010pqb.1_Intron|SYT2_uc009xaf.2_Intron	NM_001136504	NP_001129976
CCDC6	8030	broad.mit.edu	37	10	61642309	61642313	+	Intron	DEL	AAGGA	-	-			2011-2349:2012-299-T	g.chr10:61642309_61642313delAAGGA	uc001jks.3	-							NM_005436	NP_005427
SLC22A12	116085	broad.mit.edu	37	11	64362438	64362438	+	Intron	DEL	A	-	-			2011-2349:2012-299-T	g.chr11:64362438delA	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
NRXN3	9369	broad.mit.edu	37	14	80312193	80312194	+	Intron	DEL	GG	-	-			2011-2349:2012-299-T	g.chr14:80312193_80312194delGG	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_Intron|NRXN3_uc001xuq.2_Intron|NRXN3_uc010asw.2_Intron|NRXN3_uc001xur.3_Intron	NM_004796	NP_004787
NRXN3	9369	broad.mit.edu	37	14	80312201	80312204	+	Intron	DEL	GGGA	-	-			2011-2349:2012-299-T	g.chr14:80312201_80312204delGGGA	uc001xun.2	+						NRXN3_uc001xum.1_Intron|NRXN3_uc001xup.2_Intron|NRXN3_uc001xuq.2_Intron|NRXN3_uc010asw.2_Intron|NRXN3_uc001xur.3_Intron	NM_004796	NP_004787
RPTOR	57521	broad.mit.edu	37	17	78904191	78904196	+	Intron	DEL	CTCATT	-	-	rs150918221;rs62068523	by1000genomes	2011-2349:2012-299-T	g.chr17:78904191_78904196delCTCATT	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
WDR45L	56270	broad.mit.edu	37	17	80597841	80597842	+	Intron	DEL	TG	-	-	rs113965390		2011-2349:2012-299-T	g.chr17:80597841_80597842delTG	uc002kfq.2	-						WDR45L_uc002kfr.2_Intron	NM_019613	NP_062559
TSSC1	7260	broad.mit.edu	37	2	3244747	3244747	+	Intron	DEL	C	-	-			2011-2349:2012-299-T	g.chr2:3244747delC	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
NFE2L2	4780	broad.mit.edu	37	2	178215940	178215941	+	Intron	INS	-	TG	TG	rs145437078	by1000genomes	2011-2349:2012-299-T	g.chr2:178215940_178215941insTG	uc002uli.3	-						LOC100130691_uc002ulk.1_Intron	NM_001145412	NP_001138884
EP300	2033	broad.mit.edu	37	22	41568668	41568669	+	Splice_Site	INS	-	T	T			2011-2349:2012-299-T	g.chr22:41568668_41568669insT	uc003azl.3	+	28	5012	c.4617_splice	c.e28+1	p.D1539_splice		NM_001429	NP_001420
TGFBR2	7048	broad.mit.edu	37	3	30702786	30702787	+	Intron	DEL	CT	-	-			2011-2349:2012-299-T	g.chr3:30702786_30702787delCT	uc003ceo.2	+						TGFBR2_uc003cen.2_Intron	NM_003242	NP_003233
SLC12A7	10723	broad.mit.edu	37	5	1071768	1071769	+	Intron	INS	-	A	A			2011-2349:2012-299-T	g.chr5:1071768_1071769insA	uc003jbu.2	-							NM_006598	NP_006589
SLC6A3	6531	broad.mit.edu	37	5	1423459	1423460	+	Intron	INS	-	G	G	rs368273;rs146228578	by1000genomes	2011-2349:2012-299-T	g.chr5:1423459_1423460insG	uc003jck.2	-							NM_001044	NP_001035
ODZ2	57451	broad.mit.edu	37	5	166927066	166927067	+	Intron	INS	-	GTGT	GTGT	rs140219401	by1000genomes	2011-2349:2012-299-T	g.chr5:166927066_166927067insGTGT	uc010jjd.2	+							NM_001122679	NP_001116151
IKBKAP	8518	broad.mit.edu	37	9	111663071	111663072	+	Intron	DEL	CA	-	-			2011-2349:2012-299-T	g.chr9:111663071_111663072delCA	uc004bdm.3	-						IKBKAP_uc004bdl.2_Intron|IKBKAP_uc011lwc.1_Intron|IKBKAP_uc010mtq.2_Intron	NM_003640	NP_003631
IKBKAP	8518	broad.mit.edu	37	9	111663114	111663115	+	Intron	DEL	AT	-	-			2011-2349:2012-299-T	g.chr9:111663114_111663115delAT	uc004bdm.3	-						IKBKAP_uc004bdl.2_Intron|IKBKAP_uc011lwc.1_Intron|IKBKAP_uc010mtq.2_Intron	NM_003640	NP_003631
OLFM1	10439	broad.mit.edu	37	9	137983637	137983638	+	Intron	INS	-	CA	CA			2011-2349:2012-299-T	g.chr9:137983637_137983638insCA	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
HSFX2	100130086	broad.mit.edu	37	X	148686970	148686973	+	Intron	DEL	CTTT	-	-			2011-2349:2012-299-T	g.chrX:148686970_148686973delCTTT	uc004fdl.2	-						HSFX1_uc004fdm.2_Intron|TMEM185A_uc011mxp.1_Intron|TMEM185A_uc004fdo.2_Intron|TMEM185A_uc011mxq.1_Intron|TMEM185A_uc004fdp.3_Intron	NM_016153	NP_057237
SIGIRR	59307	broad.mit.edu	37	11	411476	411477	+	Intron	INS	-	GG	GG	rs59561078;rs67973639		2011-2350:2012-298-T	g.chr11:411476_411477insGG	uc001lpd.2	-						SIGIRR_uc001lpf.2_Intron|SIGIRR_uc001lpe.1_Intron|SIGIRR_uc001lpg.2_5'Flank	NM_001135054	NP_001128526
SYT1	6857	broad.mit.edu	37	12	79702391	79702392	+	Intron	DEL	AA	-	-			2011-2350:2012-298-T	g.chr12:79702391_79702392delAA	uc001sys.2	+						SYT1_uc001syt.2_Intron|SYT1_uc001syu.2_Intron|SYT1_uc001syv.2_Intron	NM_001135805	NP_001129277
NXN	64359	broad.mit.edu	37	17	797119	797120	+	Intron	INS	-	T	T	rs66494844		2011-2350:2012-298-T	g.chr17:797119_797120insT	uc002fsa.2	-						NXN_uc002fsb.1_Intron	NM_022463	NP_071908
MPPED1	758	broad.mit.edu	37	22	43828836	43828837	+	Intron	INS	-	AA	AA			2011-2350:2012-298-T	g.chr22:43828836_43828837insAA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
MPPED1	758	broad.mit.edu	37	22	43828841	43828842	+	Intron	INS	-	GG	GG			2011-2350:2012-298-T	g.chr22:43828841_43828842insGG	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
EPHA3	2042	broad.mit.edu	37	3	89480531	89480532	+	Intron	INS	-	T	T			2011-2350:2012-298-T	g.chr3:89480531_89480532insT	uc003dqy.2	+						EPHA3_uc010hon.1_Intron	NM_005233	NP_005224
CCDC52	152185	broad.mit.edu	37	3	113177056	113177057	+	Intron	INS	-	TCTTTGCA	TCTTTGCA			2011-2350:2012-298-T	g.chr3:113177056_113177057insTCTTTGCA	uc003eag.3	-						CCDC52_uc003eaf.3_Intron|CCDC52_uc003eah.1_Intron	NM_144718	NP_653319
SI	6476	broad.mit.edu	37	3	164766809	164766809	+	Intron	DEL	C	-	-	rs13072647		2011-2350:2012-298-T	g.chr3:164766809delC	uc003fei.2	-							NM_001041	NP_001032
ADAP1	11033	broad.mit.edu	37	7	946150	946150	+	Intron	DEL	A	-	-			2011-2350:2012-298-T	g.chr7:946150delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
MCPH1	79648	broad.mit.edu	37	8	6452198	6452207	+	Intron	DEL	CTGCAGGGGA	-	-	rs11279825		2011-2350:2012-298-T	g.chr8:6452198_6452207delCTGCAGGGGA	uc003wqi.2	+							NM_024596	NP_078872
SPTA1	6708	broad.mit.edu	37	1	158613927	158613927	+	Intron	DEL	A	-	-	rs77912388		2011-2351:2012-330-T	g.chr1:158613927delA	uc001fst.1	-							NM_003126	NP_003117
MYO1H	283446	broad.mit.edu	37	12	109880913	109880914	+	Intron	INS	-	TG	TG			2011-2351:2012-330-T	g.chr12:109880913_109880914insTG	uc010sxo.1	+						MYO1H_uc010sxn.1_Intron		
COL4A2	1284	broad.mit.edu	37	13	111133880	111133880	+	Intron	DEL	T	-	-	rs74198691		2011-2351:2012-330-T	g.chr13:111133880delT	uc001vqx.2	+							NM_001846	NP_001837
DPEP1	1800	broad.mit.edu	37	16	89701060	89701061	+	Intron	INS	-	T	T			2011-2351:2012-330-T	g.chr16:89701060_89701061insT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701066	89701066	+	Intron	DEL	C	-	-			2011-2351:2012-330-T	g.chr16:89701066delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701210	89701210	+	Intron	DEL	C	-	-			2011-2351:2012-330-T	g.chr16:89701210delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DLG4	1742	broad.mit.edu	37	17	7111052	7111053	+	Intron	DEL	CA	-	-			2011-2351:2012-330-T	g.chr17:7111052_7111053delCA	uc002get.3	-						DLG4_uc010vtn.1_5'Flank|DLG4_uc010cly.2_Intron|DLG4_uc010vto.1_Intron|DLG4_uc002geu.2_Intron	NM_001365	NP_001356
BZRAP1	9256	broad.mit.edu	37	17	56382833	56382835	+	Intron	DEL	GAG	-	-			2011-2351:2012-330-T	g.chr17:56382833_56382835delGAG	uc002ivx.3	-						BZRAP1_uc002ivv.2_5'Flank|BZRAP1_uc002ivw.2_Intron|BZRAP1_uc010dcs.2_Intron|BZRAP1_uc010wnt.1_Intron	NM_004758	NP_004749
CUL3	8452	broad.mit.edu	37	2	225368387	225368388	+	Frame_Shift_Ins	INS	-	T	T			2011-2351:2012-330-T	g.chr2:225368387_225368388insT	uc002vny.2	-	9	1742_1743	c.1358_1359insA	c.(1357-1359)AACfs	p.N453fs	CUL3_uc010zls.1_Frame_Shift_Ins_p.N387fs|CUL3_uc010fwy.1_Frame_Shift_Ins_p.N459fs	NM_003590	NP_003581
SNPH	9751	broad.mit.edu	37	20	1258392	1258393	+	Intron	DEL	TG	-	-			2011-2351:2012-330-T	g.chr20:1258392_1258393delTG	uc002wes.2	+						SNPH_uc002wet.2_Intron	NM_014723	NP_055538
LAMA5	3911	broad.mit.edu	37	20	60889012	60889013	+	Intron	INS	-	GAG	GAG			2011-2351:2012-330-T	g.chr20:60889012_60889013insGAG	uc002ycq.2	-							NM_005560	NP_005551
RIPK4	54101	broad.mit.edu	37	21	43162014	43162039	+	Frame_Shift_Del	DEL	CCACCGCCAGGTGCAGCAGGCTGGCA	-	-			2011-2351:2012-330-T	g.chr21:43162014_43162039delCCACCGCCAGGTGCAGCAGGCTGGCA	uc002yzn.1	-	8	1362_1387	c.1314_1339delTGCCAGCCTGCTGCACCTGGCGGTGG	c.(1312-1341)GGTGCCAGCCTGCTGCACCTGGCGGTGGAGfs	p.G438fs		NM_020639	NP_065690
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45196704	45196704	+	Intron	DEL	C	-	-			2011-2351:2012-330-T	g.chr22:45196704delC	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
SI	6476	broad.mit.edu	37	3	164766809	164766810	+	Intron	INS	-	T	T	rs13072647		2011-2351:2012-330-T	g.chr3:164766809_164766810insT	uc003fei.2	-							NM_001041	NP_001032
PTPRN2	5799	broad.mit.edu	37	7	157981436	157981436	+	Intron	DEL	T	-	-			2011-2351:2012-330-T	g.chr7:157981436delT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ST18	9705	broad.mit.edu	37	8	53188704	53188705	+	Intron	DEL	TG	-	-			2011-2351:2012-330-T	g.chr8:53188704_53188705delTG	uc003xra.2	-						ST18_uc003xrb.2_Intron|ST18_uc010lyb.2_Intron	NM_014682	NP_055497
ST18	9705	broad.mit.edu	37	8	53188713	53188717	+	Intron	DEL	CGCAC	-	-	rs116902696	by1000genomes	2011-2351:2012-330-T	g.chr8:53188713_53188717delCGCAC	uc003xra.2	-						ST18_uc003xrb.2_Intron|ST18_uc010lyb.2_Intron	NM_014682	NP_055497
ST18	9705	broad.mit.edu	37	8	53188721	53188722	+	Intron	INS	-	GG	GG	rs145651096		2011-2351:2012-330-T	g.chr8:53188721_53188722insGG	uc003xra.2	-						ST18_uc003xrb.2_Intron|ST18_uc010lyb.2_Intron	NM_014682	NP_055497
TTF1	7270	broad.mit.edu	37	9	135252957	135252958	+	Intron	INS	-	TGCA	TGCA			2011-2351:2012-330-T	g.chr9:135252957_135252958insTGCA	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
PCDH15	65217	broad.mit.edu	37	10	57298712	57298712	+	Intron	DEL	T	-	-			2011-2352:2012-297-T	g.chr10:57298712delT	uc001jjv.1	-							NM_001142770	NP_001136242
GPR133	283383	broad.mit.edu	37	12	131502472	131502473	+	Intron	INS	-	GC	GC			2011-2352:2012-297-T	g.chr12:131502472_131502473insGC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
RB1	5925	broad.mit.edu	37	13	49034105	49034107	+	Intron	DEL	CTC	-	-	rs9562824		2011-2352:2012-297-T	g.chr13:49034105_49034107delCTC	uc001vcb.2	+							NM_000321	NP_000312
LPPR3	79948	broad.mit.edu	37	19	815456	815456	+	Intron	DEL	G	-	-			2011-2352:2012-297-T	g.chr19:815456delG	uc002lpx.1	-						LPPR3_uc010dru.1_5'Flank|LPPR3_uc002lpw.1_Intron|LPPR3_uc002lpy.1_Intron	NM_024888	NP_079164
LPPR3	79948	broad.mit.edu	37	19	815467	815469	+	Intron	DEL	CGT	-	-	rs59458440		2011-2352:2012-297-T	g.chr19:815467_815469delCGT	uc002lpx.1	-						LPPR3_uc010dru.1_5'Flank|LPPR3_uc002lpw.1_Intron|LPPR3_uc002lpy.1_Intron	NM_024888	NP_079164
SBNO2	22904	broad.mit.edu	37	19	1164574	1164575	+	Intron	INS	-	A	A			2011-2352:2012-297-T	g.chr19:1164574_1164575insA	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
PPP1R12C	54776	broad.mit.edu	37	19	55608575	55608577	+	Intron	DEL	CAC	-	-	rs66557851		2011-2352:2012-297-T	g.chr19:55608575_55608577delCAC	uc002qix.2	-						PPP1R12C_uc010yfs.1_Intron|PPP1R12C_uc002qiy.2_Intron	NM_017607	NP_060077
COL18A1	80781	broad.mit.edu	37	21	46857234	46857235	+	Intron	INS	-	TA	TA			2011-2352:2012-297-T	g.chr21:46857234_46857235insTA	uc002zhg.2	+							NM_130445	NP_569712
UPK3A	7380	broad.mit.edu	37	22	45687073	45687074	+	Intron	DEL	TT	-	-			2011-2352:2012-297-T	g.chr22:45687073_45687074delTT	uc003bfy.2	+						UPK3A_uc010gzy.2_Intron	NM_006953	NP_008884
TFRC	7037	broad.mit.edu	37	3	195809150	195809150	+	5'Flank	DEL	G	-	-			2011-2352:2012-297-T	g.chr3:195809150delG	uc003fvz.3	-						TFRC_uc003fwa.3_5'Flank|TFRC_uc010hzy.2_5'Flank|TFRC_uc011btr.1_5'Flank	NM_003234	NP_003225
GRM4	2914	broad.mit.edu	37	6	34039476	34039477	+	Intron	DEL	AG	-	-			2011-2352:2012-297-T	g.chr6:34039476_34039477delAG	uc003oir.3	-						GRM4_uc011dsn.1_Intron|GRM4_uc010jvh.2_Intron|GRM4_uc010jvi.2_Intron|GRM4_uc011dsl.1_Intron|GRM4_uc003oiq.2_Intron|GRM4_uc011dsm.1_Intron	NM_000841	NP_000832
MAD1L1	8379	broad.mit.edu	37	7	1980598	1980600	+	Intron	DEL	CCG	-	-	rs71844593;rs74210453		2011-2352:2012-297-T	g.chr7:1980598_1980600delCCG	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron|MAD1L1_uc003sld.1_5'Flank	NM_001013836	NP_001013858
PRKAG2	51422	broad.mit.edu	37	7	151538793	151538794	+	Intron	INS	-	AT	AT	rs149410279	by1000genomes	2011-2352:2012-297-T	g.chr7:151538793_151538794insAT	uc003wkk.2	-						PRKAG2_uc010lqe.1_Intron|PRKAG2_uc003wkm.1_Intron	NM_016203	NP_057287
SGCZ	137868	broad.mit.edu	37	8	14250865	14250866	+	Intron	INS	-	A	A	rs150765747;rs11417882	by1000genomes	2011-2352:2012-297-T	g.chr8:14250865_14250866insA	uc003wwq.2	-						SGCZ_uc010lss.2_Intron	NM_139167	NP_631906
PKHD1L1	93035	broad.mit.edu	37	8	110471797	110471797	+	Intron	DEL	A	-	-	rs11287370		2011-2352:2012-297-T	g.chr8:110471797delA	uc003yne.2	+							NM_177531	NP_803875
ZNF189	7743	broad.mit.edu	37	9	104170647	104170648	+	Frame_Shift_Ins	INS	-	G	G			2011-2352:2012-297-T	g.chr9:104170647_104170648insG	uc004bbh.1	+	3	873_874	c.597_598insG	c.(595-600)ACTGGGfs	p.T199fs	ZNF189_uc004bbg.1_Frame_Shift_Ins_p.T157fs|ZNF189_uc004bbi.1_Frame_Shift_Ins_p.T185fs|ZNF189_uc011lvk.1_Frame_Shift_Ins_p.T184fs	NM_003452	NP_003443
PRKCZ	5590	broad.mit.edu	37	1	2086728	2086730	+	Intron	DEL	GTA	-	-			2011-2353:2012-296-T	g.chr1:2086728_2086730delGTA	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron|PRKCZ_uc009vla.2_Intron|PRKCZ_uc010nyx.1_Intron|PRKCZ_uc009vlb.2_Intron	NM_002744	NP_002735
LGR6	59352	broad.mit.edu	37	1	202174232	202174237	+	Intron	DEL	AAACAA	-	-	rs145104147	by1000genomes	2011-2353:2012-296-T	g.chr1:202174232_202174237delAAACAA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LHPP	64077	broad.mit.edu	37	10	126226788	126226788	+	Intron	DEL	C	-	-	rs66497940		2011-2353:2012-296-T	g.chr10:126226788delC	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron	NM_022126	NP_071409
INF2	64423	broad.mit.edu	37	14	105187368	105187368	+	Intron	DEL	C	-	-			2011-2353:2012-296-T	g.chr14:105187368delC	uc010tyi.1	+							NM_022489	NP_071934
RPTOR	57521	broad.mit.edu	37	17	78608411	78608412	+	Intron	INS	-	TGCA	TGCA			2011-2353:2012-296-T	g.chr17:78608411_78608412insTGCA	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
ZNF761	388561	broad.mit.edu	37	19	53959457	53959457	+	Frame_Shift_Del	DEL	A	-	-			2011-2353:2012-296-T	g.chr19:53959457delA	uc010eqp.2	+	7	2154	c.1696delA	c.(1696-1698)AAAfs	p.K566fs	ZNF761_uc010ydy.1_Frame_Shift_Del_p.K512fs|ZNF761_uc002qbt.1_Frame_Shift_Del_p.K512fs	NM_001008401	NP_001008401
OSBPL2	9885	broad.mit.edu	37	20	60845756	60845764	+	Intron	DEL	CCTCTCTGG	-	-			2011-2353:2012-296-T	g.chr20:60845756_60845764delCCTCTCTGG	uc002yck.1	+						OSBPL2_uc002ycl.1_Intron|OSBPL2_uc011aah.1_Intron	NM_144498	NP_653081
SLC12A7	10723	broad.mit.edu	37	5	1072505	1072506	+	Intron	INS	-	G	G			2011-2353:2012-296-T	g.chr5:1072505_1072506insG	uc003jbu.2	-							NM_006598	NP_006589
RNF130	55819	broad.mit.edu	37	5	179442525	179442525	+	Intron	DEL	G	-	-	rs66797381		2011-2353:2012-296-T	g.chr5:179442525delG	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
SYNE1	23345	broad.mit.edu	37	6	152552705	152552705	+	Intron	DEL	A	-	-			2011-2353:2012-296-T	g.chr6:152552705delA	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron	NM_182961	NP_892006
PSMB1	5689	broad.mit.edu	37	6	170805289	170805291	+	Intron	DEL	AAG	-	-			2011-2353:2012-296-T	g.chr6:170805289_170805291delAAG	uc003qxq.2	-							NM_002793	
PTPRN2	5799	broad.mit.edu	37	7	158233682	158233682	+	Intron	DEL	G	-	-			2011-2353:2012-296-T	g.chr7:158233682delG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
EXD3	54932	broad.mit.edu	37	9	140250073	140250073	+	Intron	DEL	G	-	-			2011-2353:2012-296-T	g.chr9:140250073delG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
PPP2R3B	28227	broad.mit.edu	37	X	339828	339829	+	Intron	INS	-	TT	TT			2011-2353:2012-296-T	g.chrX:339828_339829insTT	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
PPP2R3B	28227	broad.mit.edu	37	X	339849	339854	+	Intron	DEL	TGCACC	-	-			2011-2353:2012-296-T	g.chrX:339849_339854delTGCACC	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
PPP2R3B	28227	broad.mit.edu	37	X	339870	339871	+	Intron	INS	-	TGTG	TGTG			2011-2353:2012-296-T	g.chrX:339870_339871insTGTG	uc004cpg.2	-						PPP2R3B_uc011mha.1_Intron	NM_013239	NP_037371
AGRN	375790	broad.mit.edu	37	1	966229	966230	+	Intron	DEL	GT	-	-			2011-2354:2012-295-T	g.chr1:966229_966230delGT	uc001ack.1	+							NM_198576	NP_940978
RASGEF1A	221002	broad.mit.edu	37	10	43721024	43721025	+	Intron	INS	-	GT	GT	rs139307816	by1000genomes	2011-2354:2012-295-T	g.chr10:43721024_43721025insGT	uc001jap.1	-						RASGEF1A_uc001jao.1_Intron	NM_145313	NP_660356
TMEM132D	121256	broad.mit.edu	37	12	129573050	129573050	+	Intron	DEL	A	-	-			2011-2354:2012-295-T	g.chr12:129573050delA	uc009zyl.1	-						TMEM132D_uc001uia.2_5'Flank	NM_133448	NP_597705
RB1	5925	broad.mit.edu	37	13	49034111	49034112	+	Intron	INS	-	CT	CT			2011-2354:2012-295-T	g.chr13:49034111_49034112insCT	uc001vcb.2	+							NM_000321	NP_000312
FUT8	2530	broad.mit.edu	37	14	65935107	65935108	+	Intron	INS	-	TT	TT	rs139616800		2011-2354:2012-295-T	g.chr14:65935107_65935108insTT	uc001xin.2	+						FUT8_uc001xio.2_Intron|FUT8_uc010tsp.1_Intron|FUT8_uc001xir.3_Intron|FUT8_uc001xip.2_Intron|FUT8_uc001xiq.2_Intron|MIR625_hsa-mir-625|MI0003639_5'Flank	NM_178155	NP_835368
TIMM22	29928	broad.mit.edu	37	17	897591	897591	+	5'Flank	DEL	C	-	-	rs71148412		2011-2354:2012-295-T	g.chr17:897591delC	uc002fsc.2	+							NM_013337	NP_037469
LRRC37A3	374819	broad.mit.edu	37	17	62858977	62858980	+	Intron	DEL	TACT	-	-			2011-2354:2012-295-T	g.chr17:62858977_62858980delTACT	uc002jey.2	-						LRRC37A3_uc010wqg.1_Intron|LRRC37A3_uc002jex.1_Intron|LRRC37A3_uc010wqf.1_Intron|LRRC37A3_uc010dek.1_Intron	NM_199340	NP_955372
SLC16A3	9123	broad.mit.edu	37	17	80218066	80218067	+	Intron	INS	-	AT	AT	rs67069100		2011-2354:2012-295-T	g.chr17:80218066_80218067insAT	uc002kee.2	+						CSNK1D_uc002kef.2_Intron|CSNK1D_uc002kei.2_Intron|CSNK1D_uc002kej.2_Intron|CSNK1D_uc010wvj.1_Intron	NM_004207	NP_004198
SPTBN4	57731	broad.mit.edu	37	19	41062903	41062903	+	Intron	DEL	C	-	-	rs34510741		2011-2354:2012-295-T	g.chr19:41062903delC	uc002ony.2	+						SPTBN4_uc002onx.2_Intron|SPTBN4_uc002onz.2_Intron|SPTBN4_uc010egx.2_Intron|SPTBN4_uc002ooa.2_Intron	NM_020971	NP_066022
FOXP1	27086	broad.mit.edu	37	3	71090490	71090490	+	Frame_Shift_Del	DEL	G	-	-			2011-2354:2012-295-T	g.chr3:71090490delG	uc003dol.2	-	7	1181	c.858delC	c.(856-858)CCCfs	p.P286fs	FOXP1_uc003dom.2_Frame_Shift_Del_p.P210fs|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Frame_Shift_Del_p.P286fs|FOXP1_uc003dop.2_Frame_Shift_Del_p.P286fs|FOXP1_uc003doq.1_Frame_Shift_Del_p.P285fs|FOXP1_uc003doi.2_Frame_Shift_Del_p.P186fs|FOXP1_uc003doj.2_Frame_Shift_Del_p.P186fs|FOXP1_uc003dok.2_Frame_Shift_Del_p.P99fs|FOXP1_uc003dor.1_Frame_Shift_Del_p.P64fs	NM_032682	NP_116071
CHCHD6	84303	broad.mit.edu	37	3	126583894	126583896	+	Intron	DEL	CCT	-	-			2011-2354:2012-295-T	g.chr3:126583894_126583896delCCT	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
ADAP1	11033	broad.mit.edu	37	7	945408	945408	+	Intron	DEL	A	-	-			2011-2354:2012-295-T	g.chr7:945408delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	157524244	157524245	+	Intron	DEL	TC	-	-	rs71907770;rs113678305	by1000genomes	2011-2354:2012-295-T	g.chr7:157524244_157524245delTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TTF1	7270	broad.mit.edu	37	9	135253108	135253109	+	Intron	INS	-	G	G			2011-2354:2012-295-T	g.chr9:135253108_135253109insG	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTLL10	254173	broad.mit.edu	37	1	1128149	1128151	+	Intron	DEL	TTC	-	-	rs61766172;rs78299231		2011-2355:2012-294-T	g.chr1:1128149_1128151delTTC	uc001acy.2	+						TTLL10_uc010nyg.1_Intron	NM_001130045	NP_001123517
PRDM16	63976	broad.mit.edu	37	1	3242476	3242476	+	Intron	DEL	C	-	-	rs141274558	by1000genomes	2011-2355:2012-294-T	g.chr1:3242476delC	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3242495	3242496	+	Intron	INS	-	C	C			2011-2355:2012-294-T	g.chr1:3242495_3242496insC	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
CAMTA1	23261	broad.mit.edu	37	1	7553133	7553134	+	Intron	DEL	AG	-	-	rs11810769		2011-2355:2012-294-T	g.chr1:7553133_7553134delAG	uc001aoi.2	+							NM_015215	NP_056030
GRIK3	2899	broad.mit.edu	37	1	37424639	37424640	+	Intron	DEL	TG	-	-			2011-2355:2012-294-T	g.chr1:37424639_37424640delTG	uc001caz.2	-						GRIK3_uc001cba.1_Intron	NM_000831	NP_000822
GUCA2A	2980	broad.mit.edu	37	1	42632492	42632493	+	5'Flank	DEL	GT	-	-			2011-2355:2012-294-T	g.chr1:42632492_42632493delGT	uc001chd.1	-							NM_033553	NP_291031
GUCA2A	2980	broad.mit.edu	37	1	42633114	42633115	+	5'Flank	INS	-	TGAGG	TGAGG	rs150434346;rs138148984	by1000genomes	2011-2355:2012-294-T	g.chr1:42633114_42633115insTGAGG	uc001chd.1	-							NM_033553	NP_291031
FLG	2312	broad.mit.edu	37	1	152277308	152277311	+	Frame_Shift_Del	DEL	TGTC	-	-	rs34687484	byFrequency	2011-2355:2012-294-T	g.chr1:152277308_152277311delTGTC	uc001ezu.1	-	3	10087_10090	c.10051_10054delGACA	c.(10051-10056)GACACAfs	p.D3351fs		NM_002016	NP_002007
DENND4B	9909	broad.mit.edu	37	1	153907304	153907306	+	In_Frame_Del	DEL	TGT	-	-	rs35902206;rs12567786	by1000genomes	2011-2355:2012-294-T	g.chr1:153907304_153907306delTGT	uc001fdd.1	-	18	3104_3106	c.2703_2705delACA	c.(2701-2706)CAACAG>CAG	p.901_902QQ>Q	uc001fdc.1_RNA	NM_014856	NP_055671
DENND4B	9909	broad.mit.edu	37	1	153907305	153907306	+	Frame_Shift_Ins	INS	-	C	C	rs35902206;rs12567786	by1000genomes	2011-2355:2012-294-T	g.chr1:153907305_153907306insC	uc001fdd.1	-	18	3104_3105	c.2703_2704insG	c.(2701-2706)CAACAGfs	p.Q901fs	uc001fdc.1_RNA	NM_014856	NP_055671
DENND4B	9909	broad.mit.edu	37	1	153907306	153907307	+	Frame_Shift_Ins	INS	-	GC	GC	rs12567786;rs66739466	by1000genomes	2011-2355:2012-294-T	g.chr1:153907306_153907307insGC	uc001fdd.1	-	18	3103_3104	c.2702_2703insGC	c.(2701-2703)CAAfs	p.Q901fs	uc001fdc.1_RNA	NM_014856	NP_055671
NOS1AP	9722	broad.mit.edu	37	1	162332218	162332225	+	Intron	DEL	GTGACAGA	-	-	rs11277545;rs60162928		2011-2355:2012-294-T	g.chr1:162332218_162332225delGTGACAGA	uc001gbv.2	+						NOS1AP_uc010pks.1_Intron|NOS1AP_uc001gbw.2_Intron|NOS1AP_uc009wut.1_5'Flank	NM_014697	NP_055512
NOS1AP	9722	broad.mit.edu	37	1	162332266	162332270	+	Intron	DEL	AAAGA	-	-	rs10550168		2011-2355:2012-294-T	g.chr1:162332266_162332270delAAAGA	uc001gbv.2	+						NOS1AP_uc010pks.1_Intron|NOS1AP_uc001gbw.2_Intron|NOS1AP_uc009wut.1_5'Flank	NM_014697	NP_055512
DISC1	27185	broad.mit.edu	37	1	232173718	232173721	+	3'UTR	DEL	AGTA	-	-	rs71927075;rs71162209		2011-2355:2012-294-T	g.chr1:232173718_232173721delAGTA	uc001huz.2	+	13					DISC1_uc001hva.2_3'UTR	NM_018662	NP_061132
ADARB2	105	broad.mit.edu	37	10	1711883	1711884	+	Intron	INS	-	AC	AC			2011-2355:2012-294-T	g.chr10:1711883_1711884insAC	uc009xhq.2	-							NM_018702	NP_061172
TUBGCP2	10844	broad.mit.edu	37	10	135094371	135094373	+	Intron	DEL	GGG	-	-	rs74164135		2011-2355:2012-294-T	g.chr10:135094371_135094373delGGG	uc001lmg.1	-						TUBGCP2_uc001lmf.1_Intron|TUBGCP2_uc010qvc.1_Intron|TUBGCP2_uc009ybk.1_Intron|TUBGCP2_uc010qvd.1_Intron|TUBGCP2_uc001lmh.1_Intron	NM_006659	NP_006650
RNH1	6050	broad.mit.edu	37	11	497647	497648	+	Intron	INS	-	CTCA	CTCA	rs149085487	by1000genomes	2011-2355:2012-294-T	g.chr11:497647_497648insCTCA	uc001lpk.1	-						RNH1_uc001lpl.1_Intron|RNH1_uc001lpm.1_Intron|RNH1_uc001lpn.1_Intron|RNH1_uc001lpo.1_Intron|RNH1_uc009ybw.1_Intron|RNH1_uc001lpp.1_Intron|RNH1_uc001lpt.1_Intron|RNH1_uc001lpq.1_Intron|RNH1_uc001lpr.1_Intron|RNH1_uc001lps.1_Intron	NM_203389	NP_976323
DKK3	27122	broad.mit.edu	37	11	12000048	12000048	+	Intron	DEL	T	-	-	rs28510652		2011-2355:2012-294-T	g.chr11:12000048delT	uc001mju.2	-						DKK3_uc010rcf.1_Intron|DKK3_uc001mjv.2_Intron|DKK3_uc001mjw.2_Intron|DKK3_uc010rcg.1_Intron	NM_001018057	NP_001018067
SLC22A12	116085	broad.mit.edu	37	11	64363529	64363532	+	Intron	DEL	GATG	-	-			2011-2355:2012-294-T	g.chr11:64363529_64363532delGATG	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
CACNA2D4	93589	broad.mit.edu	37	12	1980306	1980307	+	Intron	DEL	GT	-	-			2011-2355:2012-294-T	g.chr12:1980306_1980307delGT	uc001qjp.2	-						CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952
SYT1	6857	broad.mit.edu	37	12	79702391	79702392	+	Intron	DEL	AA	-	-			2011-2355:2012-294-T	g.chr12:79702391_79702392delAA	uc001sys.2	+						SYT1_uc001syt.2_Intron|SYT1_uc001syu.2_Intron|SYT1_uc001syv.2_Intron	NM_001135805	NP_001129277
KSR2	283455	broad.mit.edu	37	12	118231963	118231964	+	Intron	DEL	AT	-	-			2011-2355:2012-294-T	g.chr12:118231963_118231964delAT	uc001two.2	-							NM_173598	NP_775869
TMEM132D	121256	broad.mit.edu	37	12	129988543	129988544	+	Intron	INS	-	TCA	TCA	rs141085342;rs149583103		2011-2355:2012-294-T	g.chr12:129988543_129988544insTCA	uc009zyl.1	-							NM_133448	NP_597705
IL17D	53342	broad.mit.edu	37	13	21292810	21292813	+	Intron	DEL	CACA	-	-			2011-2355:2012-294-T	g.chr13:21292810_21292813delCACA	uc001unm.2	+							NM_138284	NP_612141
RB1	5925	broad.mit.edu	37	13	49034111	49034111	+	Intron	DEL	C	-	-			2011-2355:2012-294-T	g.chr13:49034111delC	uc001vcb.2	+							NM_000321	NP_000312
RB1	5925	broad.mit.edu	37	13	49034115	49034115	+	Intron	DEL	C	-	-	rs56388055		2011-2355:2012-294-T	g.chr13:49034115delC	uc001vcb.2	+							NM_000321	NP_000312
GRTP1	79774	broad.mit.edu	37	13	114004774	114004775	+	Intron	INS	-	C	C	rs141598085	by1000genomes	2011-2355:2012-294-T	g.chr13:114004774_114004775insC	uc001vtn.2	-						GRTP1_uc010tkb.1_Intron|GRTP1_uc010tkc.1_Intron	NM_024719	NP_078995
PAX9	5083	broad.mit.edu	37	14	37126871	37126872	+	5'UTR	INS	-	C	C	rs138135767;rs66881397	by1000genomes	2011-2355:2012-294-T	g.chr14:37126871_37126872insC	uc001wty.3	+	1						NM_006194	NP_006185
TRIP11	9321	broad.mit.edu	37	14	92487750	92487750	+	Intron	DEL	G	-	-			2011-2355:2012-294-T	g.chr14:92487750delG	uc001xzy.2	-							NM_004239	NP_004230
INF2	64423	broad.mit.edu	37	14	105242417	105242418	+	Intron	INS	-	C	C	rs143493410	by1000genomes	2011-2355:2012-294-T	g.chr14:105242417_105242418insC	uc010tyi.1	+						AKT1_uc001ypk.2_Intron|AKT1_uc001ypl.2_Intron|AKT1_uc010axa.2_Intron|AKT1_uc001ypm.2_Intron|AKT1_uc001ypn.2_Intron|AKT1_uc010tyk.1_Intron	NM_022489	NP_071934
CMIP	80790	broad.mit.edu	37	16	81702528	81702529	+	Intron	DEL	CT	-	-			2011-2355:2012-294-T	g.chr16:81702528_81702529delCT	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
CHMP1A	5119	broad.mit.edu	37	16	89721844	89721845	+	Intron	INS	-	C	C			2011-2355:2012-294-T	g.chr16:89721844_89721845insC	uc002fnu.2	-						CHMP1A_uc002fnv.2_Intron|C16orf55_uc002fnw.1_5'Flank|C16orf55_uc002fnx.3_5'Flank|C16orf55_uc010vpk.1_5'Flank|C16orf55_uc002fny.1_5'Flank	NM_002768	NP_002759
TCF25	22980	broad.mit.edu	37	16	89951209	89951210	+	Intron	INS	-	C	C			2011-2355:2012-294-T	g.chr16:89951209_89951210insC	uc002fpb.2	+						TCF25_uc002fpc.2_Intron	NM_014972	NP_055787
MC1R	4157	broad.mit.edu	37	16	89981346	89981347	+	5'Flank	DEL	TG	-	-			2011-2355:2012-294-T	g.chr16:89981346_89981347delTG	uc002fpe.3	+						uc010ciy.1_RNA	NM_002386	NP_002377
RPH3AL	9501	broad.mit.edu	37	17	136759	136760	+	Intron	DEL	CT	-	-			2011-2355:2012-294-T	g.chr17:136759_136760delCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
SLC39A11	201266	broad.mit.edu	37	17	70779264	70779266	+	Intron	DEL	GAT	-	-	rs36103922		2011-2355:2012-294-T	g.chr17:70779264_70779266delGAT	uc002jjb.2	-						SLC39A11_uc002jja.2_Intron	NM_001159770	NP_001153242
B3GNTL1	146712	broad.mit.edu	37	17	80941969	80941970	+	Intron	INS	-	G	G	rs145189579	by1000genomes	2011-2355:2012-294-T	g.chr17:80941969_80941970insG	uc002kgg.1	-						B3GNTL1_uc002kgf.1_Intron|B3GNTL1_uc002kge.1_Intron	NM_001009905	NP_001009905
B3GNTL1	146712	broad.mit.edu	37	17	81008681	81008683	+	Intron	DEL	GGA	-	-	rs10609454		2011-2355:2012-294-T	g.chr17:81008681_81008683delGGA	uc002kgg.1	-						B3GNTL1_uc002kgf.1_5'Flank	NM_001009905	NP_001009905
TNNI3	7137	broad.mit.edu	37	19	55663540	55663541	+	Intron	DEL	TC	-	-	rs72301544;rs56007758		2011-2355:2012-294-T	g.chr19:55663540_55663541delTC	uc002qjg.3	-						TNNT1_uc002qjb.3_5'Flank|TNNT1_uc002qjc.3_5'Flank|TNNT1_uc002qje.3_5'Flank|TNNT1_uc002qjd.3_5'Flank|TNNT1_uc002qjf.2_5'Flank|TNNI3_uc010yft.1_Intron	NM_000363	NP_000354
PXDN	7837	broad.mit.edu	37	2	1683594	1683595	+	Intron	DEL	GT	-	-			2011-2355:2012-294-T	g.chr2:1683594_1683595delGT	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
CYS1	192668	broad.mit.edu	37	2	10213201	10213201	+	Intron	DEL	G	-	-	rs111765581		2011-2355:2012-294-T	g.chr2:10213201delG	uc002rag.2	-							NM_001037160	NP_001032237
CLASP1	23332	broad.mit.edu	37	2	122368198	122368199	+	Intron	INS	-	GGA	GGA	rs148306674	by1000genomes	2011-2355:2012-294-T	g.chr2:122368198_122368199insGGA	uc002tnc.2	-						CLASP1_uc010yyz.1_Intron|CLASP1_uc010yza.1_Intron|CLASP1_uc010yzb.1_Intron|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Intron	NM_015282	NP_056097
LRP1B	53353	broad.mit.edu	37	2	141299227	141299227	+	Intron	DEL	C	-	-			2011-2355:2012-294-T	g.chr2:141299227delC	uc002tvj.1	-							NM_018557	NP_061027
CASP8	841	broad.mit.edu	37	2	202149392	202149394	+	Intron	DEL	GGG	-	-	rs142003924	by1000genomes	2011-2355:2012-294-T	g.chr2:202149392_202149394delGGG	uc002uxr.1	+						CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc002uxw.1_Intron|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Intron	NM_033355	NP_203519
SPAG16	79582	broad.mit.edu	37	2	214272618	214272621	+	Intron	DEL	AGAC	-	-	rs138394422		2011-2355:2012-294-T	g.chr2:214272618_214272621delAGAC	uc002veq.2	+						SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Intron|SPAG16_uc010zjk.1_Intron	NM_024532	NP_078808
CUL3	8452	broad.mit.edu	37	2	225378502	225378502	+	Intron	DEL	G	-	-	rs3215058		2011-2355:2012-294-T	g.chr2:225378502delG	uc002vny.2	-						CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Intron	NM_003590	NP_003581
UGT1A5	54579	broad.mit.edu	37	2	234633926	234633928	+	Intron	DEL	GCA	-	-	rs55679336		2011-2355:2012-294-T	g.chr2:234633926_234633928delGCA	uc002vuw.2	+						UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron	NM_019078	NP_061951
AGAP1	116987	broad.mit.edu	37	2	236711374	236711375	+	Intron	INS	-	TGA	TGA			2011-2355:2012-294-T	g.chr2:236711374_236711375insTGA	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
AGAP1	116987	broad.mit.edu	37	2	236711382	236711383	+	Intron	INS	-	GTG	GTG			2011-2355:2012-294-T	g.chr2:236711382_236711383insGTG	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
RSPH1	89765	broad.mit.edu	37	21	43897121	43897121	+	Intron	DEL	A	-	-	rs60974545		2011-2355:2012-294-T	g.chr21:43897121delA	uc002zbg.2	-							NM_080860	NP_543136
COL6A1	1291	broad.mit.edu	37	21	47400844	47400845	+	5'Flank	DEL	TC	-	-	rs142610988		2011-2355:2012-294-T	g.chr21:47400844_47400845delTC	uc002zhu.1	+							NM_001848	NP_001839
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45197183	45197184	+	Intron	INS	-	A	A	rs71188487		2011-2355:2012-294-T	g.chr22:45197183_45197184insA	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
FAM19A5	25817	broad.mit.edu	37	22	48930004	48930005	+	Intron	INS	-	G	G	rs147079066	by1000genomes	2011-2355:2012-294-T	g.chr22:48930004_48930005insG	uc003bim.3	+							NM_001082967	NP_001076436
FANCD2	2177	broad.mit.edu	37	3	10068428	10068437	+	Intron	DEL	CCAGATGGTA	-	-	rs3846170;rs3846171;rs3846172;rs3846173;rs3846175;rs3846176		2011-2355:2012-294-T	g.chr3:10068428_10068437delCCAGATGGTA	uc003buw.2	+						CIDEC_uc003bto.2_5'Flank|FANCD2_uc003bux.1_Intron|FANCD2_uc003buy.1_Intron|CIDECP_uc003bus.2_5'Flank|CIDECP_uc003but.2_5'Flank|CIDECP_uc003buu.1_5'Flank|FANCD2_uc003buv.2_Intron	NM_033084	NP_149075
EPHA3	2042	broad.mit.edu	37	3	89521832	89521836	+	Intron	DEL	GAAAG	-	-			2011-2355:2012-294-T	g.chr3:89521832_89521836delGAAAG	uc003dqy.2	+						EPHA3_uc010hon.1_Intron	NM_005233	NP_005224
EPHA3	2042	broad.mit.edu	37	3	89521839	89521841	+	Intron	DEL	TTG	-	-			2011-2355:2012-294-T	g.chr3:89521839_89521841delTTG	uc003dqy.2	+						EPHA3_uc010hon.1_Intron	NM_005233	NP_005224
CHCHD6	84303	broad.mit.edu	37	3	126583849	126583850	+	Intron	INS	-	CCA	CCA			2011-2355:2012-294-T	g.chr3:126583849_126583850insCCA	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
IFT122	55764	broad.mit.edu	37	3	129235063	129235066	+	Intron	DEL	CACA	-	-			2011-2355:2012-294-T	g.chr3:129235063_129235066delCACA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
TP63	8626	broad.mit.edu	37	3	189348969	189348973	+	5'Flank	DEL	CTCCA	-	-	rs76937731		2011-2355:2012-294-T	g.chr3:189348969_189348973delCTCCA	uc003fry.2	+						TP63_uc003frx.2_5'Flank|TP63_uc003frz.2_5'Flank|TP63_uc010hzc.1_5'Flank	NM_003722	NP_003713
PDE6B	5158	broad.mit.edu	37	4	616419	616420	+	5'Flank	INS	-	AT	AT	rs137887967;rs72501955	by1000genomes	2011-2355:2012-294-T	g.chr4:616419_616420insAT	uc003gap.2	+						PDE6B_uc003gao.3_5'Flank	NM_000283	NP_000274
PDE6B	5158	broad.mit.edu	37	4	616642	616643	+	5'Flank	DEL	AT	-	-	rs34143738		2011-2355:2012-294-T	g.chr4:616642_616643delAT	uc003gap.2	+						PDE6B_uc003gao.3_5'Flank	NM_000283	NP_000274
GAK	2580	broad.mit.edu	37	4	907700	907701	+	Intron	DEL	CA	-	-			2011-2355:2012-294-T	g.chr4:907700_907701delCA	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_Intron|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246
DOK7	285489	broad.mit.edu	37	4	3470264	3470267	+	Intron	DEL	TGTA	-	-			2011-2355:2012-294-T	g.chr4:3470264_3470267delTGTA	uc003ghd.2	+						DOK7_uc003ghe.2_Intron	NM_173660	NP_775931
DOK7	285489	broad.mit.edu	37	4	3470382	3470385	+	Intron	DEL	TGAG	-	-			2011-2355:2012-294-T	g.chr4:3470382_3470385delTGAG	uc003ghd.2	+						DOK7_uc003ghe.2_Intron	NM_173660	NP_775931
JAKMIP1	152789	broad.mit.edu	37	4	6172803	6172803	+	Intron	DEL	C	-	-	rs149182941		2011-2355:2012-294-T	g.chr4:6172803delC	uc003giu.3	-						JAKMIP1_uc010idb.1_Intron|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Intron|JAKMIP1_uc010ide.2_Intron	NM_144720	NP_653321
SORCS2	57537	broad.mit.edu	37	4	7726206	7726207	+	Intron	INS	-	AT	AT	rs147164731		2011-2355:2012-294-T	g.chr4:7726206_7726207insAT	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
SORCS2	57537	broad.mit.edu	37	4	7726207	7726208	+	Intron	INS	-	A	A	rs147164731		2011-2355:2012-294-T	g.chr4:7726207_7726208insA	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
SH3TC1	54436	broad.mit.edu	37	4	8241157	8241158	+	Intron	INS	-	CA	CA	rs145892605;rs137987746	by1000genomes	2011-2355:2012-294-T	g.chr4:8241157_8241158insCA	uc003gkv.3	+						SH3TC1_uc003gkw.3_Intron|SH3TC1_uc003gkx.3_Intron|SH3TC1_uc003gky.2_Intron	NM_018986	NP_061859
FAT4	79633	broad.mit.edu	37	4	126411022	126411024	+	Intron	DEL	TTG	-	-			2011-2355:2012-294-T	g.chr4:126411022_126411024delTTG	uc003ifj.3	+						FAT4_uc011cgp.1_Intron|FAT4_uc003ifi.1_Intron	NM_024582	NP_078858
INPP4B	8821	broad.mit.edu	37	4	143768417	143768420	+	5'Flank	DEL	TGAA	-	-	rs77418105		2011-2355:2012-294-T	g.chr4:143768417_143768420delTGAA	uc003iix.3	-						INPP4B_uc003iiw.3_5'Flank	NM_003866	NP_003857
SORBS2	8470	broad.mit.edu	37	4	186749016	186749018	+	Intron	DEL	CAT	-	-			2011-2355:2012-294-T	g.chr4:186749016_186749018delCAT	uc003iyl.2	-						SORBS2_uc003iym.2_Intron|SORBS2_uc011cky.1_Intron	NM_021069	NP_066547
CLPTM1L	81037	broad.mit.edu	37	5	1333617	1333617	+	Intron	DEL	G	-	-	rs74203463		2011-2355:2012-294-T	g.chr5:1333617delG	uc003jch.2	-						CLPTM1L_uc003jcg.2_Intron	NM_030782	NP_110409
CDH12	1010	broad.mit.edu	37	5	22212770	22212782	+	Translation_Start_Site	DEL	TCAGCTGAAATCC	-	-			2011-2355:2012-294-T	g.chr5:22212770_22212782delTCAGCTGAAATCC	uc010iuc.2	-	1	97_109	c.-361_-349delGGATTTCAGCTGA	c.(-363--347)GAGGATTTCAGCTGATG>GATG		CDH12_uc011cno.1_Intron|CDH12_uc003jgk.2_Intron	NM_004061	NP_004052
SQSTM1	8878	broad.mit.edu	37	5	179238393	179238393	+	Intron	DEL	T	-	-	rs145068652	by1000genomes	2011-2355:2012-294-T	g.chr5:179238393delT	uc011dgr.1	+						SQSTM1_uc011dgs.1_Intron|SQSTM1_uc003mkt.1_Intron	NM_001142298	NP_001135770
HLA-G	3135	broad.mit.edu	37	6	29893550	29893553	+	Intron	DEL	AAAC	-	-	rs145760005;rs1611433		2011-2355:2012-294-T	g.chr6:29893550_29893553delAAAC	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HCG4P6_uc003noh.1_5'Flank|uc003noi.2_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29908929	29908930	+	Intron	DEL	AC	-	-	rs67901303		2011-2355:2012-294-T	g.chr6:29908929_29908930delAC	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
PRIM2	5558	broad.mit.edu	37	6	57339798	57339798	+	Intron	DEL	C	-	-	rs72200125		2011-2355:2012-294-T	g.chr6:57339798delC	uc003pdx.2	+							NM_000947	NP_000938
SYNE1	23345	broad.mit.edu	37	6	152489647	152489649	+	Intron	DEL	AAC	-	-	rs71899550		2011-2355:2012-294-T	g.chr6:152489647_152489649delAAC	uc010kiw.2	-						SYNE1_uc010kiv.2_Intron|SYNE1_uc003qos.3_Intron|SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc003qop.3_Intron|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152786895	152786896	+	Intron	INS	-	AC	AC	rs113781129		2011-2355:2012-294-T	g.chr6:152786895_152786896insAC	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
PACRG	135138	broad.mit.edu	37	6	163268044	163268044	+	Intron	DEL	A	-	-			2011-2355:2012-294-T	g.chr6:163268044delA	uc003qua.2	+						PACRG_uc003qub.2_Intron|PACRG_uc003quc.2_Intron	NM_152410	NP_689623
SMOC2	64094	broad.mit.edu	37	6	169025553	169025554	+	Intron	DEL	AC	-	-			2011-2355:2012-294-T	g.chr6:169025553_169025554delAC	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_Intron	NM_022138	NP_071421
ADAP1	11033	broad.mit.edu	37	7	945259	945260	+	Intron	INS	-	A	A	rs145893866		2011-2355:2012-294-T	g.chr7:945259_945260insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ETV1	2115	broad.mit.edu	37	7	14029660	14029660	+	5'Flank	DEL	T	-	-			2011-2355:2012-294-T	g.chr7:14029660delT	uc011jxq.1	-						ETV1_uc003ssw.3_5'Flank|ETV1_uc003ssx.2_Intron|ETV1_uc011jxr.1_Intron|ETV1_uc011jxs.1_Intron	NM_004956	NP_004947
PCLO	27445	broad.mit.edu	37	7	82430822	82430823	+	Intron	INS	-	T	T			2011-2355:2012-294-T	g.chr7:82430822_82430823insT	uc003uhx.2	-							NM_033026	NP_149015
PTPRN2	5799	broad.mit.edu	37	7	157777089	157777090	+	Intron	INS	-	AT	AT	rs67724246;rs72141606		2011-2355:2012-294-T	g.chr7:157777089_157777090insAT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157864850	157864851	+	Intron	INS	-	C	C	rs150537994	by1000genomes	2011-2355:2012-294-T	g.chr7:157864850_157864851insC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158055573	158055576	+	Intron	DEL	ACAT	-	-	rs72440195		2011-2355:2012-294-T	g.chr7:158055573_158055576delACAT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1781024	1781025	+	Intron	DEL	AG	-	-	rs149614002	by1000genomes	2011-2355:2012-294-T	g.chr8:1781024_1781025delAG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
CSMD1	64478	broad.mit.edu	37	8	3509639	3509640	+	Intron	INS	-	ACC	ACC	rs141532900;rs66939370	by1000genomes	2011-2355:2012-294-T	g.chr8:3509639_3509640insACC	uc011kwk.1	-							NM_033225	NP_150094
POMT1	10585	broad.mit.edu	37	9	134391120	134391121	+	Intron	INS	-	AC	AC	rs111320093		2011-2355:2012-294-T	g.chr9:134391120_134391121insAC	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
C9orf171	389799	broad.mit.edu	37	9	135418907	135418907	+	Intron	DEL	A	-	-	rs113401480		2011-2355:2012-294-T	g.chr9:135418907delA	uc004cbn.2	+						C9orf171_uc004cbo.2_Intron	NM_207417	NP_997300
TSC1	7248	broad.mit.edu	37	9	135780007	135780013	+	Intron	DEL	ACACTGG	-	-	rs142817620;rs143481199		2011-2355:2012-294-T	g.chr9:135780007_135780013delACACTGG	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359
EXD3	54932	broad.mit.edu	37	9	140250145	140250145	+	Intron	DEL	G	-	-			2011-2355:2012-294-T	g.chr9:140250145delG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
CSDE1	7812	broad.mit.edu	37	1	115259932	115259933	+	3'UTR	INS	-	T	T			2011-2356:2012-293-T	g.chr1:115259932_115259933insT	uc001efk.2	-	20					NRAS_uc009wgu.2_5'Flank|CSDE1_uc001efi.2_3'UTR|CSDE1_uc001efj.2_RNA|CSDE1_uc001efl.2_3'UTR|CSDE1_uc001efm.2_3'UTR|CSDE1_uc009wgv.2_3'UTR|CSDE1_uc001efn.2_3'UTR	NM_001007553	NP_001007554
LGR6	59352	broad.mit.edu	37	1	202175075	202175076	+	Intron	DEL	AC	-	-			2011-2356:2012-293-T	g.chr1:202175075_202175076delAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
CCDC6	8030	broad.mit.edu	37	10	61641921	61641921	+	Intron	DEL	G	-	-	rs67028863		2011-2356:2012-293-T	g.chr10:61641921delG	uc001jks.3	-							NM_005436	NP_005427
ZNF195	7748	broad.mit.edu	37	11	3393805	3393806	+	Intron	INS	-	AAAT	AAAT			2011-2356:2012-293-T	g.chr11:3393805_3393806insAAAT	uc001lxt.2	-						ZNF195_uc001lxv.2_Intron|ZNF195_uc001lxs.2_Intron|ZNF195_uc010qxr.1_Intron|ZNF195_uc009ydz.2_Intron|ZNF195_uc001lxu.2_Intron	NM_001130520	NP_001123992
KRT8	3856	broad.mit.edu	37	12	53311761	53311761	+	Intron	DEL	A	-	-			2011-2356:2012-293-T	g.chr12:53311761delA	uc009zmk.1	-						KRT8_uc009zml.1_Intron|KRT8_uc009zmm.1_Intron	NM_002273	NP_002264
FAM101A	144347	broad.mit.edu	37	12	124787346	124787347	+	Intron	INS	-	A	A			2011-2356:2012-293-T	g.chr12:124787346_124787347insA	uc001ugd.1	+						FAM101A_uc001uge.1_Intron	NM_181709	NP_859060
C20orf26	26074	broad.mit.edu	37	20	20336109	20336110	+	Intron	INS	-	TG	TG			2011-2356:2012-293-T	g.chr20:20336109_20336110insTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
SRC	6714	broad.mit.edu	37	20	35990230	35990237	+	Intron	DEL	GTAGAGAT	-	-	rs112316453;rs66592675		2011-2356:2012-293-T	g.chr20:35990230_35990237delGTAGAGAT	uc002xgx.2	+						SRC_uc002xgy.2_Intron	NM_005417	NP_005408
HERC3	8916	broad.mit.edu	37	4	89620124	89620125	+	Intron	INS	-	C	C	rs137990789;rs66939344	by1000genomes	2011-2356:2012-293-T	g.chr4:89620124_89620125insC	uc003hrw.1	+						HERC3_uc011cdn.1_Intron|HERC3_uc011cdo.1_Intron|NAP1L5_uc003hrx.2_5'Flank	NM_014606	NP_055421
SLC12A7	10723	broad.mit.edu	37	5	1073356	1073356	+	Intron	DEL	G	-	-	rs76407533		2011-2356:2012-293-T	g.chr5:1073356delG	uc003jbu.2	-							NM_006598	NP_006589
DPP6	1804	broad.mit.edu	37	7	154675717	154675718	+	Intron	DEL	CA	-	-	rs147260123		2011-2356:2012-293-T	g.chr7:154675717_154675718delCA	uc003wlk.2	+						DPP6_uc003wli.2_Intron|DPP6_uc003wlm.2_Intron|DPP6_uc011kvq.1_Intron	NM_130797	NP_570629
ERICH1	157697	broad.mit.edu	37	8	626446	626446	+	Intron	DEL	G	-	-			2011-2356:2012-293-T	g.chr8:626446delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
PKHD1L1	93035	broad.mit.edu	37	8	110456778	110456778	+	Intron	DEL	A	-	-	rs35472310		2011-2356:2012-293-T	g.chr8:110456778delA	uc003yne.2	+							NM_177531	NP_803875
SLC45A4	57210	broad.mit.edu	37	8	142262599	142262600	+	Intron	DEL	TG	-	-	rs68094974		2011-2356:2012-293-T	g.chr8:142262599_142262600delTG	uc010meq.1	-								
COL5A1	1289	broad.mit.edu	37	9	137576884	137576884	+	Intron	DEL	C	-	-			2011-2356:2012-293-T	g.chr9:137576884delC	uc004cfe.2	+							NM_000093	NP_000084
LGR6	59352	broad.mit.edu	37	1	202174770	202174771	+	Intron	DEL	AC	-	-	rs67852097		2011-2357:2012-292-T	g.chr1:202174770_202174771delAC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
KIAA1274	27143	broad.mit.edu	37	10	72299895	72299895	+	Intron	DEL	G	-	-			2011-2357:2012-292-T	g.chr10:72299895delG	uc001jrd.3	+						KIAA1274_uc001jre.3_Intron	NM_014431	NP_055246
LRRC27	80313	broad.mit.edu	37	10	134178143	134178143	+	Intron	DEL	A	-	-			2011-2357:2012-292-T	g.chr10:134178143delA	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
KCNG2	26251	broad.mit.edu	37	18	77625521	77625522	+	Intron	INS	-	GA	GA			2011-2357:2012-292-T	g.chr18:77625521_77625522insGA	uc010xfl.1	+							NM_012283	NP_036415
TSSC1	7260	broad.mit.edu	37	2	3298716	3298717	+	Intron	INS	-	AC	AC	rs140288126;rs68054696	by1000genomes	2011-2357:2012-292-T	g.chr2:3298716_3298717insAC	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
CXADR	1525	broad.mit.edu	37	21	18934470	18934471	+	Intron	INS	-	A	A	rs140833286;rs67334861	by1000genomes	2011-2357:2012-292-T	g.chr21:18934470_18934471insA	uc002yki.2	+						CXADR_uc002ykh.1_Intron|CXADR_uc010gld.1_Intron|CXADR_uc010gle.1_Intron|CXADR_uc002ykj.1_Intron	NM_001338	NP_001329
DSCAM	1826	broad.mit.edu	37	21	41658726	41658727	+	Intron	DEL	TG	-	-			2011-2357:2012-292-T	g.chr21:41658726_41658727delTG	uc002yyq.1	-						DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380
RAC2	5880	broad.mit.edu	37	22	37640084	37640091	+	Intron	DEL	GGGCACCA	-	-			2011-2357:2012-292-T	g.chr22:37640084_37640091delGGGCACCA	uc003arc.2	-							NM_002872	NP_002863
SLC6A18	348932	broad.mit.edu	37	5	1238493	1238494	+	Intron	INS	-	A	A			2011-2357:2012-292-T	g.chr5:1238493_1238494insA	uc003jby.1	+							NM_182632	NP_872438
ODZ2	57451	broad.mit.edu	37	5	166854778	166854786	+	Intron	DEL	GGGAAGGAA	-	-	rs13185808	by1000genomes	2011-2357:2012-292-T	g.chr5:166854778_166854786delGGGAAGGAA	uc010jjd.2	+							NM_001122679	NP_001116151
ADCY8	114	broad.mit.edu	37	8	131922186	131922187	+	Intron	INS	-	T	T	rs141559339		2011-2357:2012-292-T	g.chr8:131922186_131922187insT	uc003ytd.3	-						ADCY8_uc010mds.2_Intron	NM_001115	NP_001106
OPHN1	4983	broad.mit.edu	37	X	67459062	67459062	+	Intron	DEL	G	-	-	rs67901004		2011-2357:2012-292-T	g.chrX:67459062delG	uc004dww.3	-						OPHN1_uc011mpg.1_Intron|OPHN1_uc004dwx.2_Intron	NM_002547	NP_002538
ITIH5	80760	broad.mit.edu	37	10	7670792	7670793	+	Intron	DEL	GT	-	-			2011-2358:2012-1325-T	g.chr10:7670792_7670793delGT	uc001ijq.2	-						ITIH5_uc001ijr.1_Intron	NM_030569	NP_085046
SNTG2	54221	broad.mit.edu	37	2	960889	960890	+	Intron	INS	-	T	T	rs67602909		2011-2358:2012-1325-T	g.chr2:960889_960890insT	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
CASP8	841	broad.mit.edu	37	2	202124700	202124701	+	Intron	INS	-	T	T			2011-2358:2012-1325-T	g.chr2:202124700_202124701insT	uc002uxr.1	+						CASP8_uc010ftc.1_Intron|CASP8_uc002uxo.1_Intron|CASP8_uc002uxp.1_Intron|CASP8_uc002uxq.1_Intron|CASP8_uc002uxs.1_Intron|CASP8_uc002uxt.1_Intron|CASP8_uc002uxu.1_Intron|CASP8_uc010ftd.1_Intron|CASP8_uc002uxv.1_Intron|CASP8_uc002uxw.1_5'Flank	NM_033355	NP_203519
ESPNL	339768	broad.mit.edu	37	2	239034684	239034685	+	Intron	DEL	TA	-	-	rs34101062;rs139659175		2011-2358:2012-1325-T	g.chr2:239034684_239034685delTA	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
LAMA5	3911	broad.mit.edu	37	20	60889052	60889053	+	Intron	INS	-	GG	GG			2011-2358:2012-1325-T	g.chr20:60889052_60889053insGG	uc002ycq.2	-							NM_005560	NP_005551
TTLL8	164714	broad.mit.edu	37	22	50467683	50467684	+	Intron	INS	-	C	C			2011-2358:2012-1325-T	g.chr22:50467683_50467684insC	uc011ark.1	-							NM_001080447	NP_001073916
ADCY5	111	broad.mit.edu	37	3	123102829	123102830	+	Intron	DEL	AA	-	-	rs35396016		2011-2358:2012-1325-T	g.chr3:123102829_123102830delAA	uc003egh.1	-						ADCY5_uc003egg.1_Intron|ADCY5_uc003egi.1_Intron	NM_183357	NP_899200
SORCS2	57537	broad.mit.edu	37	4	7455278	7455279	+	Intron	DEL	TG	-	-			2011-2358:2012-1325-T	g.chr4:7455278_7455279delTG	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
MTNR1A	4543	broad.mit.edu	37	4	187462030	187462031	+	Intron	INS	-	GAAG	GAAG	rs5864999;rs34769608		2011-2358:2012-1325-T	g.chr4:187462030_187462031insGAAG	uc003izd.1	-							NM_005958	NP_005949
CEP72	55722	broad.mit.edu	37	5	650415	650416	+	Intron	DEL	TG	-	-			2011-2358:2012-1325-T	g.chr5:650415_650416delTG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1072382	1072383	+	Intron	INS	-	A	A			2011-2358:2012-1325-T	g.chr5:1072382_1072383insA	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072505	1072506	+	Intron	INS	-	G	G			2011-2358:2012-1325-T	g.chr5:1072505_1072506insG	uc003jbu.2	-							NM_006598	NP_006589
IL6ST	3572	broad.mit.edu	37	5	55265657	55265658	+	Frame_Shift_Ins	INS	-	A	A			2011-2358:2012-1325-T	g.chr5:55265657_55265658insA	uc003jqq.2	-	4	345_346	c.90_91insT	c.(88-93)TATATCfs	p.Y30fs	IL6ST_uc010iwb.2_Frame_Shift_Ins_p.Y30fs|IL6ST_uc010iwc.2_Frame_Shift_Ins_p.Y30fs|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_5'UTR|IL6ST_uc003jqr.2_Frame_Shift_Ins_p.Y30fs|IL6ST_uc010iwf.1_Intron	NM_002184	NP_002175
PRKAR1B	5575	broad.mit.edu	37	7	628385	628386	+	Intron	INS	-	CAC	CAC			2011-2358:2012-1325-T	g.chr7:628385_628386insCAC	uc003siu.1	-						PRKAR1B_uc003siv.2_Intron|PRKAR1B_uc003siw.1_Intron|PRKAR1B_uc003six.1_Intron	NM_002735	NP_002726
PTPRN2	5799	broad.mit.edu	37	7	157582776	157582777	+	Intron	INS	-	GGGG	GGGG	rs150902025	by1000genomes	2011-2358:2012-1325-T	g.chr7:157582776_157582777insGGGG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158224158	158224158	+	Intron	DEL	G	-	-			2011-2358:2012-1325-T	g.chr7:158224158delG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
CSMD3	114788	broad.mit.edu	37	8	113353592	113353593	+	Intron	INS	-	T	T			2011-2358:2012-1325-T	g.chr8:113353592_113353593insT	uc003ynu.2	-						CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Intron|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756
NUP214	8021	broad.mit.edu	37	9	134000626	134000626	+	5'Flank	DEL	C	-	-			2011-2358:2012-1325-T	g.chr9:134000626delC	uc004cag.2	+						NUP214_uc004cah.2_5'Flank|NUP214_uc004caf.1_5'Flank	NM_005085	NP_005076
TSC1	7248	broad.mit.edu	37	9	135780007	135780013	+	Intron	DEL	ACACTGG	-	-	rs142817620;rs143481199		2011-2358:2012-1325-T	g.chr9:135780007_135780013delACACTGG	uc004cca.2	-						TSC1_uc004ccb.3_Intron|TSC1_uc011mcq.1_Intron|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359
OPHN1	4983	broad.mit.edu	37	X	67459062	67459062	+	Intron	DEL	G	-	-	rs67901004		2011-2358:2012-1325-T	g.chrX:67459062delG	uc004dww.3	-						OPHN1_uc011mpg.1_Intron|OPHN1_uc004dwx.2_Intron	NM_002547	NP_002538
RNH1	6050	broad.mit.edu	37	11	497211	497212	+	Intron	INS	-	CACA	CACA	rs146656956	by1000genomes	2011-2359:2012-1341-T	g.chr11:497211_497212insCACA	uc001lpk.1	-						RNH1_uc001lpl.1_Intron|RNH1_uc001lpm.1_Intron|RNH1_uc001lpn.1_Intron|RNH1_uc001lpo.1_Intron|RNH1_uc009ybw.1_Intron|RNH1_uc001lpp.1_Intron|RNH1_uc001lpt.1_Intron|RNH1_uc001lpq.1_Intron|RNH1_uc001lpr.1_Intron|RNH1_uc001lps.1_Intron	NM_203389	NP_976323
MYO7A	4647	broad.mit.edu	37	11	76903948	76903949	+	Intron	INS	-	TTT	TTT			2011-2359:2012-1341-T	g.chr11:76903948_76903949insTTT	uc001oyb.2	+						MYO7A_uc010rsm.1_Intron|MYO7A_uc001oyc.2_Intron|MYO7A_uc009yus.1_Intron|MYO7A_uc009yut.1_Intron	NM_000260	NP_000251
CDRT4	284040	broad.mit.edu	37	17	15368709	15368710	+	Intron	DEL	AC	-	-			2011-2359:2012-1341-T	g.chr17:15368709_15368710delAC	uc002gop.1	-						CDRT4_uc010vvw.1_Intron|FAM18B2_uc010vvx.1_Intron	NM_173622	NP_775893
TMEM146	257062	broad.mit.edu	37	19	5742169	5742170	+	Intron	DEL	GT	-	-			2011-2359:2012-1341-T	g.chr19:5742169_5742170delGT	uc002mda.2	+						TMEM146_uc010duj.1_Intron	NM_152784	NP_689997
LTBP1	4052	broad.mit.edu	37	2	33589266	33589266	+	Intron	DEL	T	-	-			2011-2359:2012-1341-T	g.chr2:33589266delT	uc002ros.2	+						LTBP1_uc002rot.2_Intron|LTBP1_uc002rou.2_Intron|LTBP1_uc002rov.2_Intron|LTBP1_uc010ymz.1_Intron|LTBP1_uc010yna.1_Intron|LTBP1_uc010ynb.1_Intron	NM_206943	NP_996826
BIN1	274	broad.mit.edu	37	2	127833341	127833342	+	Intron	INS	-	G	G			2011-2359:2012-1341-T	g.chr2:127833341_127833342insG	uc002tns.1	-						BIN1_uc010yzf.1_Intron|BIN1_uc010yzg.1_Intron|BIN1_uc002tnu.1_Intron|BIN1_uc002toa.1_Intron|BIN1_uc002tnt.1_Intron|BIN1_uc002tnv.1_Intron|BIN1_uc002tnw.1_Intron|BIN1_uc002tnx.1_Intron|BIN1_uc002tny.1_Intron|BIN1_uc002tnz.1_Intron|BIN1_uc002tob.1_Intron|BIN1_uc002toc.1_Intron	NM_139343	NP_647593
ESPNL	339768	broad.mit.edu	37	2	239034684	239034685	+	Intron	DEL	TA	-	-	rs34101062;rs139659175		2011-2359:2012-1341-T	g.chr2:239034684_239034685delTA	uc002vxq.3	+						ESPNL_uc010fyw.2_Intron	NM_194312	NP_919288
ADCY2	108	broad.mit.edu	37	5	7825504	7825505	+	Intron	DEL	GC	-	-			2011-2359:2012-1341-T	g.chr5:7825504_7825505delGC	uc003jdz.1	+						ADCY2_uc011cmo.1_Intron|ADCY2_uc010itm.1_Intron	NM_020546	NP_065433
ADCY2	108	broad.mit.edu	37	5	7825508	7825508	+	Intron	DEL	C	-	-			2011-2359:2012-1341-T	g.chr5:7825508delC	uc003jdz.1	+						ADCY2_uc011cmo.1_Intron|ADCY2_uc010itm.1_Intron	NM_020546	NP_065433
LETM2	137994	broad.mit.edu	37	8	38262780	38262780	+	Intron	DEL	T	-	-			2011-2359:2012-1341-T	g.chr8:38262780delT	uc003xlm.1	+						LETM2_uc003xll.1_Intron|LETM2_uc003xln.1_Intron|LETM2_uc003xlo.1_Intron	NM_144652	NP_653253
POMT1	10585	broad.mit.edu	37	9	134391153	134391154	+	Intron	DEL	TA	-	-	rs139935499;rs144209086	by1000genomes	2011-2359:2012-1341-T	g.chr9:134391153_134391154delTA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
MORN1	79906	broad.mit.edu	37	1	2258590	2258591	+	Intron	INS	-	ACAC	ACAC	rs149761185;rs144904421	by1000genomes	2011-2360:2012-325-T	g.chr1:2258590_2258591insACAC	uc001ajb.1	-							NM_024848	NP_079124
PCDH15	65217	broad.mit.edu	37	10	57298686	57298687	+	Intron	DEL	CC	-	-			2011-2360:2012-325-T	g.chr10:57298686_57298687delCC	uc001jjv.1	-							NM_001142770	NP_001136242
PCDH15	65217	broad.mit.edu	37	10	57298691	57298691	+	Intron	DEL	T	-	-			2011-2360:2012-325-T	g.chr10:57298691delT	uc001jjv.1	-							NM_001142770	NP_001136242
ODF3	113746	broad.mit.edu	37	11	194743	194744	+	5'Flank	INS	-	CACT	CACT			2011-2360:2012-325-T	g.chr11:194743_194744insCACT	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
CORO7	79585	broad.mit.edu	37	16	4394388	4394389	+	Intron	DEL	TG	-	-			2011-2360:2012-325-T	g.chr16:4394388_4394389delTG	uc002cwf.2	-						CORO7_uc002cwe.2_Intron|TIMM16_uc002cwd.2_Intron	NM_024535	NP_078811
SLC38A10	124565	broad.mit.edu	37	17	79223265	79223265	+	Intron	DEL	G	-	-			2011-2360:2012-325-T	g.chr17:79223265delG	uc002jzz.1	-						SLC38A10_uc002jzy.1_Intron	NM_001037984	NP_001033073
CELF4	56853	broad.mit.edu	37	18	35071167	35071167	+	Intron	DEL	G	-	-	rs10707619		2011-2360:2012-325-T	g.chr18:35071167delG	uc002lae.2	-						CELF4_uc010dnd.1_Intron|CELF4_uc002lag.2_Intron|CELF4_uc002laf.2_Intron|CELF4_uc002lai.2_Intron	NM_020180	NP_064565
TCF3	6929	broad.mit.edu	37	19	1628152	1628153	+	Intron	INS	-	G	G			2011-2360:2012-325-T	g.chr19:1628152_1628153insG	uc002ltr.2	-						TCF3_uc002ltt.3_Intron|TCF3_uc002ltq.2_Intron|TCF3_uc002lts.1_Intron	NM_003200	NP_003191
MYT1L	23040	broad.mit.edu	37	2	1870216	1870219	+	Intron	DEL	GAGA	-	-			2011-2360:2012-325-T	g.chr2:1870216_1870219delGAGA	uc002qxe.2	-						MYT1L_uc002qxd.2_Intron	NM_015025	NP_055840
TP63	8626	broad.mit.edu	37	3	189348969	189348973	+	5'Flank	DEL	CTCCA	-	-	rs76937731		2011-2360:2012-325-T	g.chr3:189348969_189348973delCTCCA	uc003fry.2	+						TP63_uc003frx.2_5'Flank|TP63_uc003frz.2_5'Flank|TP63_uc010hzc.1_5'Flank	NM_003722	NP_003713
NCAPG2	54892	broad.mit.edu	37	7	158460384	158460385	+	Intron	INS	-	T	T	rs138737992		2011-2360:2012-325-T	g.chr7:158460384_158460385insT	uc003wnv.1	-						NCAPG2_uc010lqu.1_Intron|NCAPG2_uc003wnw.1_Intron|NCAPG2_uc003wnx.1_Intron|NCAPG2_uc011kwe.1_Intron|NCAPG2_uc011kwc.1_5'Flank|NCAPG2_uc011kwd.1_5'Flank	NM_017760	NP_060230
DLGAP2	9228	broad.mit.edu	37	8	1611168	1611169	+	Intron	DEL	GT	-	-	rs61106333		2011-2360:2012-325-T	g.chr8:1611168_1611169delGT	uc003wpl.2	+						DLGAP2_uc003wpm.2_Intron	NM_004745	NP_004736
CDKN2A	1029	broad.mit.edu	37	9	21971160	21971160	+	Frame_Shift_Del	DEL	G	-	-			2011-2360:2012-325-T	g.chr9:21971160delG	uc003zpk.2	-	2	410	c.198delC	c.(196-198)CACfs	p.H66fs	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Frame_Shift_Del_p.R122fs	NM_000077	NP_000068
TTF1	7270	broad.mit.edu	37	9	135253659	135253660	+	Intron	INS	-	GT	GT			2011-2360:2012-325-T	g.chr9:135253659_135253660insGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
LOC200030	200030	broad.mit.edu	37	1	148004891	148004891	+	Intron	DEL	A	-	-			2011-2361:2012-1294-T	g.chr1:148004891delA	uc001eqf.2	-						LOC200030_uc010ozz.1_Intron|LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqq.2_Intron	NM_017940	NP_060410
LGR6	59352	broad.mit.edu	37	1	202174656	202174657	+	Intron	DEL	CA	-	-			2011-2361:2012-1294-T	g.chr1:202174656_202174657delCA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
FAIM3	9214	broad.mit.edu	37	1	207097912	207097913	+	5'Flank	DEL	GT	-	-			2011-2361:2012-1294-T	g.chr1:207097912_207097913delGT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
FANCA	2175	broad.mit.edu	37	16	89811911	89811912	+	Intron	INS	-	A	A	rs5000712;rs112679580		2011-2361:2012-1294-T	g.chr16:89811911_89811912insA	uc002fou.1	-						FANCA_uc010vpn.1_Intron|FANCA_uc010vpo.1_Intron	NM_000135	NP_000126
TSSC1	7260	broad.mit.edu	37	2	3244687	3244688	+	Intron	INS	-	AAAG	AAAG	rs74999910		2011-2361:2012-1294-T	g.chr2:3244687_3244688insAAAG	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
CUL3	8452	broad.mit.edu	37	2	225376126	225376127	+	Frame_Shift_Ins	INS	-	A	A			2011-2361:2012-1294-T	g.chr2:225376126_225376127insA	uc002vny.2	-	6	1211_1212	c.827_828insT	c.(826-828)ATAfs	p.I276fs	CUL3_uc010zls.1_Frame_Shift_Ins_p.I210fs|CUL3_uc010fwy.1_Frame_Shift_Ins_p.I282fs	NM_003590	NP_003581
SH3TC1	54436	broad.mit.edu	37	4	8241032	8241037	+	Intron	DEL	ACACAG	-	-	rs10532430		2011-2361:2012-1294-T	g.chr4:8241032_8241037delACACAG	uc003gkv.3	+						SH3TC1_uc003gkw.3_Intron|SH3TC1_uc003gkx.3_Intron|SH3TC1_uc003gky.2_Intron	NM_018986	NP_061859
TERT	7015	broad.mit.edu	37	5	1272688	1272689	+	Intron	INS	-	CA	CA	rs10700999;rs67978303		2011-2361:2012-1294-T	g.chr5:1272688_1272689insCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
DNAH5	1767	broad.mit.edu	37	5	13919310	13919310	+	Frame_Shift_Del	DEL	G	-	-			2011-2361:2012-1294-T	g.chr5:13919310delG	uc003jfd.2	-	7	992	c.950delC	c.(949-951)GCGfs	p.A317fs	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360
TG	7038	broad.mit.edu	37	8	134124273	134124274	+	Intron	INS	-	AC	AC			2011-2361:2012-1294-T	g.chr8:134124273_134124274insAC	uc003ytw.2	+						TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron	NM_003235	NP_003226
SVIL	6840	broad.mit.edu	37	10	29795722	29795722	+	Intron	DEL	T	-	-	rs111645375		2011-2362:2012-363-T	g.chr10:29795722delT	uc001iut.1	-						SVIL_uc010qdw.1_Intron|SVIL_uc001iuu.1_Intron	NM_021738	NP_068506
LHPP	64077	broad.mit.edu	37	10	126195749	126195750	+	Intron	INS	-	G	G			2011-2362:2012-363-T	g.chr10:126195749_126195750insG	uc001lhs.1	+						LHPP_uc001lht.1_Intron|LHPP_uc009yai.1_Intron	NM_022126	NP_071409
TMEM132D	121256	broad.mit.edu	37	12	129674825	129674826	+	Intron	INS	-	G	G			2011-2362:2012-363-T	g.chr12:129674825_129674826insG	uc009zyl.1	-							NM_133448	NP_597705
GRTP1	79774	broad.mit.edu	37	13	113986628	113986629	+	Intron	DEL	CA	-	-			2011-2362:2012-363-T	g.chr13:113986628_113986629delCA	uc001vtn.2	-						GRTP1_uc010tkb.1_Intron|GRTP1_uc010tkc.1_Intron	NM_024719	NP_078995
EVL	51466	broad.mit.edu	37	14	100591385	100591386	+	Intron	DEL	AC	-	-	rs139590878;rs77018455		2011-2362:2012-363-T	g.chr14:100591385_100591386delAC	uc001ygt.2	+						EVL_uc001ygv.2_Intron|EVL_uc001ygu.2_Intron|EVL_uc010avu.2_Intron	NM_016337	NP_057421
MRPL46	26589	broad.mit.edu	37	15	89003438	89003439	+	Intron	INS	-	TC	TC	rs66473335		2011-2362:2012-363-T	g.chr15:89003438_89003439insTC	uc002bmj.2	-						MRPL46_uc002bmi.1_3'UTR|MRPL46_uc002bmk.2_Intron	NM_022163	NP_071446
LRRC37B	114659	broad.mit.edu	37	17	30354382	30354383	+	Intron	INS	-	TG	TG			2011-2362:2012-363-T	g.chr17:30354382_30354383insTG	uc002hgu.2	+						LRRC37B_uc010wbx.1_Intron|LRRC37B_uc010csu.2_Intron	NM_052888	NP_443120
ARHGEF1	9138	broad.mit.edu	37	19	42418877	42418877	+	Intron	DEL	T	-	-			2011-2362:2012-363-T	g.chr19:42418877delT	uc002osc.2	+								
ARHGEF1	9138	broad.mit.edu	37	19	42418882	42418882	+	Intron	DEL	T	-	-			2011-2362:2012-363-T	g.chr19:42418882delT	uc002osc.2	+								
GAD1	2571	broad.mit.edu	37	2	171684615	171684616	+	Intron	INS	-	TCCTCACCC	TCCTCACCC	rs72439441		2011-2362:2012-363-T	g.chr2:171684615_171684616insTCCTCACCC	uc002ugi.2	+						GAD1_uc002ugh.2_Intron	NM_000817	NP_000808
STAT1	6772	broad.mit.edu	37	2	191874732	191874746	+	Splice_Site	DEL	TATAGGGAAAAAGAA	-	-			2011-2362:2012-363-T	g.chr2:191874732_191874746delTATAGGGAAAAAGAA	uc002usj.2	-	3	388	c.0_splice	c.e3-1		STAT1_uc010fse.1_Splice_Site|STAT1_uc002usk.2_Splice_Site|STAT1_uc002usl.2_Splice_Site_p.W2_splice|STAT1_uc010fsf.1_Splice_Site	NM_007315	NP_009330
TNS1	7145	broad.mit.edu	37	2	218670201	218670202	+	Intron	INS	-	AG	AG			2011-2362:2012-363-T	g.chr2:218670201_218670202insAG	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
TNS1	7145	broad.mit.edu	37	2	218670204	218670205	+	Intron	INS	-	TAC	TAC			2011-2362:2012-363-T	g.chr2:218670204_218670205insTAC	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
TNS1	7145	broad.mit.edu	37	2	218670230	218670231	+	Intron	INS	-	TACG	TACG			2011-2362:2012-363-T	g.chr2:218670230_218670231insTACG	uc002vgt.2	-						TNS1_uc002vgr.2_Intron|TNS1_uc002vgs.2_Intron|TNS1_uc002vgq.2_Intron	NM_022648	NP_072174
SRC	6714	broad.mit.edu	37	20	35990266	35990273	+	Intron	DEL	GTAGAGAT	-	-	rs72271164		2011-2362:2012-363-T	g.chr20:35990266_35990273delGTAGAGAT	uc002xgx.2	+						SRC_uc002xgy.2_Intron	NM_005417	NP_005408
TERT	7015	broad.mit.edu	37	5	1273354	1273355	+	Intron	INS	-	TGTG	TGTG	rs113470372		2011-2362:2012-363-T	g.chr5:1273354_1273355insTGTG	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
TERT	7015	broad.mit.edu	37	5	1273355	1273356	+	Intron	INS	-	C	C			2011-2362:2012-363-T	g.chr5:1273355_1273356insC	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
TRAPPC9	83696	broad.mit.edu	37	8	141167143	141167143	+	Intron	DEL	T	-	-	rs67192772		2011-2362:2012-363-T	g.chr8:141167143delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
SHOX	6473	broad.mit.edu	37	X	583482	583483	+	5'Flank	DEL	AT	-	-			2011-2362:2012-363-T	g.chrX:583482_583483delAT	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SHOX	6473	broad.mit.edu	37	X	583506	583507	+	5'Flank	DEL	AG	-	-			2011-2362:2012-363-T	g.chrX:583506_583507delAG	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
USH2A	7399	broad.mit.edu	37	1	215955732	215955733	+	Intron	INS	-	AA	AA	rs138855979;rs71879852	by1000genomes	2011-2366:2012-1295-T	g.chr1:215955732_215955733insAA	uc001hku.1	-							NM_206933	NP_996816
JAKMIP3	282973	broad.mit.edu	37	10	133974000	133974000	+	Intron	DEL	G	-	-			2011-2366:2012-1295-T	g.chr10:133974000delG	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
ST8SIA1	6489	broad.mit.edu	37	12	22473968	22473968	+	Intron	DEL	G	-	-			2011-2366:2012-1295-T	g.chr12:22473968delG	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
KIF26A	26153	broad.mit.edu	37	14	104631654	104631655	+	Intron	INS	-	TG	TG			2011-2366:2012-1295-T	g.chr14:104631654_104631655insTG	uc001yos.3	+							NM_015656	NP_056471
INF2	64423	broad.mit.edu	37	14	105326518	105326519	+	Intron	DEL	CA	-	-	rs111368348;rs139268964		2011-2366:2012-1295-T	g.chr14:105326518_105326519delCA	uc010tyi.1	+							NM_022489	NP_071934
LAMA5	3911	broad.mit.edu	37	20	60889121	60889122	+	Intron	DEL	GG	-	-			2011-2366:2012-1295-T	g.chr20:60889121_60889122delGG	uc002ycq.2	-							NM_005560	NP_005551
FAM19A5	25817	broad.mit.edu	37	22	48925109	48925109	+	Intron	DEL	C	-	-	rs68070488		2011-2366:2012-1295-T	g.chr22:48925109delC	uc003bim.3	+							NM_001082967	NP_001076436
TNK2	10188	broad.mit.edu	37	3	195598855	195598855	+	Intron	DEL	T	-	-			2011-2366:2012-1295-T	g.chr3:195598855delT	uc003fvu.1	-						TNK2_uc003fvq.1_5'Flank|TNK2_uc003fvr.1_Intron|TNK2_uc003fvs.1_Intron|TNK2_uc003fvt.1_Intron|TNK2_uc010hzw.1_Intron|TNK2_uc003fvv.1_Intron	NM_005781	NP_005772
NKAP	79576	broad.mit.edu	37	X	119068419	119068419	+	Intron	DEL	G	-	-			2011-2367:2012-1296-T	g.chrX:119068419delG	uc004esh.2	-						NKAP_uc004esg.2_Intron	NM_024528	NP_078804
PHLDB1	23187	broad.mit.edu	37	11	118480022	118480023	+	Intron	INS	-	C	C			2011-2368:2012-1297-T	g.chr11:118480022_118480023insC	uc001ptr.1	+						PHLDB1_uc010ryh.1_Intron|PHLDB1_uc001pts.2_Intron|PHLDB1_uc001ptt.2_Intron|PHLDB1_uc001ptu.1_Intron	NM_015157	NP_055972
PHLDB1	23187	broad.mit.edu	37	11	118480028	118480028	+	Intron	DEL	C	-	-			2011-2368:2012-1297-T	g.chr11:118480028delC	uc001ptr.1	+						PHLDB1_uc010ryh.1_Intron|PHLDB1_uc001pts.2_Intron|PHLDB1_uc001ptt.2_Intron|PHLDB1_uc001ptu.1_Intron	NM_015157	NP_055972
DICER1	23405	broad.mit.edu	37	14	95566096	95566096	+	Intron	DEL	C	-	-			2011-2368:2012-1297-T	g.chr14:95566096delC	uc001ydw.2	-						DICER1_uc010avh.1_Intron|DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron|DICER1_uc001ydy.1_Intron	NM_030621	NP_085124
DICER1	23405	broad.mit.edu	37	14	95566098	95566108	+	Intron	DEL	CACACACACAC	-	-	rs71930859;rs71899983;rs71463970;rs58202892;rs34698774;rs66997818	by1000genomes	2011-2368:2012-1297-T	g.chr14:95566098_95566108delCACACACACAC	uc001ydw.2	-						DICER1_uc010avh.1_Intron|DICER1_uc001ydv.2_Intron|DICER1_uc001ydx.2_Intron|DICER1_uc001ydy.1_Intron	NM_030621	NP_085124
MYO9A	4649	broad.mit.edu	37	15	72395988	72395989	+	Intron	INS	-	AGA	AGA	rs147364936;rs146131392	by1000genomes	2011-2368:2012-1297-T	g.chr15:72395988_72395989insAGA	uc002atl.3	-						MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Intron	NM_006901	NP_008832
BAGE2	85319	broad.mit.edu	37	21	11099069	11099070	+	5'Flank	INS	-	CTTT	CTTT	rs147397114		2011-2368:2012-1297-T	g.chr21:11099069_11099070insCTTT	uc002yit.1	-						BAGE_uc002yix.2_5'Flank	NM_182482	NP_872288
ZNF501	115560	broad.mit.edu	37	3	44776584	44776584	+	Frame_Shift_Del	DEL	A	-	-			2011-2368:2012-1297-T	g.chr3:44776584delA	uc003cnu.1	+	3	1072	c.671delA	c.(670-672)GAAfs	p.E224fs	ZNF501_uc003cnv.1_Frame_Shift_Del_p.K168fs	NM_145044	NP_659481
HLA-G	3135	broad.mit.edu	37	6	29795082	29795082	+	Intron	DEL	A	-	-			2011-2368:2012-1297-T	g.chr6:29795082delA	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_5'Flank|HLA-G_uc010jrn.2_5'Flank|HLA-G_uc003nny.3_5'Flank|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29854982	29854983	+	Intron	DEL	AC	-	-	rs142373123;rs146815445		2011-2368:2012-1297-T	g.chr6:29854982_29854983delAC	uc011dmb.1	+						HLA-H_uc003nod.2_5'Flank|HLA-H_uc010jro.2_5'Flank	NM_002127	NP_002118
TAP1	6890	broad.mit.edu	37	6	32819684	32819685	+	Intron	INS	-	TG	TG	rs141273059	by1000genomes	2011-2368:2012-1297-T	g.chr6:32819684_32819685insTG	uc003ocg.2	-						TAP1_uc011dqi.1_Intron|PSMB9_uc011dqj.1_5'Flank|PSMB9_uc003sga.2_5'Flank	NM_000593	NP_000584
TAP1	6890	broad.mit.edu	37	6	32820695	32820696	+	Intron	INS	-	G	G	rs146655451	by1000genomes	2011-2368:2012-1297-T	g.chr6:32820695_32820696insG	uc003ocg.2	-						TAP1_uc011dqi.1_5'Flank|PSMB9_uc011dqj.1_5'Flank|PSMB9_uc003sga.2_5'Flank	NM_000593	NP_000584
SYNE1	23345	broad.mit.edu	37	6	152685873	152685873	+	Intron	DEL	A	-	-			2011-2368:2012-1297-T	g.chr6:152685873delA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
ADAM18	8749	broad.mit.edu	37	8	39463893	39463893	+	Intron	DEL	T	-	-			2011-2368:2012-1297-T	g.chr8:39463893delT	uc003xni.2	+						ADAM18_uc003xnh.2_Intron|ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Intron	NM_014237	NP_055052
SHC3	53358	broad.mit.edu	37	9	91674233	91674234	+	Intron	INS	-	G	G	rs112409651		2011-2368:2012-1297-T	g.chr9:91674233_91674234insG	uc004aqg.2	-							NM_016848	NP_058544
NACC2	138151	broad.mit.edu	37	9	138916239	138916240	+	Intron	INS	-	TT	TT			2011-2368:2012-1297-T	g.chr9:138916239_138916240insTT	uc004cgw.2	-						NACC2_uc010nbh.2_Intron	NM_144653	NP_653254
SCNN1D	6339	broad.mit.edu	37	1	1224850	1224851	+	Intron	DEL	CC	-	-			2011-2369:2012-1298-T	g.chr1:1224850_1224851delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
MYH2	4620	broad.mit.edu	37	17	10434975	10434975	+	Frame_Shift_Del	DEL	T	-	-			2011-2369:2012-1298-T	g.chr17:10434975delT	uc010coi.2	-	22	2800	c.2672delA	c.(2671-2673)AATfs	p.N891fs	uc002gml.1_Intron|MYH2_uc002gmp.3_Frame_Shift_Del_p.N891fs|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582
ZNF625	90589	broad.mit.edu	37	19	12256384	12256385	+	Frame_Shift_Ins	INS	-	T	T			2011-2369:2012-1298-T	g.chr19:12256384_12256385insT	uc002mth.2	-	4	998_999	c.648_649insA	c.(646-651)AAAGCCfs	p.K216fs	ZNF20_uc002mtg.1_Intron|ZNF625_uc010dyn.1_RNA|ZNF625_uc010dyo.1_Frame_Shift_Ins_p.K250fs	NM_145233	NP_660276
NOTCH3	4854	broad.mit.edu	37	19	15273600	15273605	+	Intron	DEL	GTGTGC	-	-	rs4019573;rs757473	by1000genomes	2011-2369:2012-1298-T	g.chr19:15273600_15273605delGTGTGC	uc002nan.2	-							NM_000435	NP_000426
CHERP	10523	broad.mit.edu	37	19	16640581	16640583	+	In_Frame_Del	DEL	TGC	-	-			2011-2369:2012-1298-T	g.chr19:16640581_16640583delTGC	uc002nei.1	-	8	1079_1081	c.1005_1007delGCA	c.(1003-1008)CAGCAA>CAA	p.335_336QQ>Q	MED26_uc002nee.2_Intron	NM_006387	NP_006378
ODZ2	57451	broad.mit.edu	37	5	166854778	166854786	+	Intron	DEL	GGGAAGGAA	-	-	rs13185808	by1000genomes	2011-2369:2012-1298-T	g.chr5:166854778_166854786delGGGAAGGAA	uc010jjd.2	+							NM_001122679	NP_001116151
ADAP1	11033	broad.mit.edu	37	7	945415	945415	+	Intron	DEL	A	-	-			2011-2369:2012-1298-T	g.chr7:945415delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
CNTNAP2	26047	broad.mit.edu	37	7	148028620	148028621	+	Intron	INS	-	A	A			2011-2369:2012-1298-T	g.chr7:148028620_148028621insA	uc003weu.1	+							NM_014141	NP_054860
TTF1	7270	broad.mit.edu	37	9	135253533	135253535	+	Intron	DEL	GTG	-	-			2011-2369:2012-1298-T	g.chr9:135253533_135253535delGTG	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
USH2A	7399	broad.mit.edu	37	1	215953166	215953166	+	Intron	DEL	T	-	-			2011-2370:2012-1299-T	g.chr1:215953166delT	uc001hku.1	-							NM_206933	NP_996816
LRRC27	80313	broad.mit.edu	37	10	134172656	134172658	+	Intron	DEL	AGC	-	-			2011-2370:2012-1299-T	g.chr10:134172656_134172658delAGC	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
SYT1	6857	broad.mit.edu	37	12	79702407	79702408	+	Intron	DEL	AG	-	-			2011-2370:2012-1299-T	g.chr12:79702407_79702408delAG	uc001sys.2	+						SYT1_uc001syt.2_Intron|SYT1_uc001syu.2_Intron|SYT1_uc001syv.2_Intron	NM_001135805	NP_001129277
RASA3	22821	broad.mit.edu	37	13	114794252	114794253	+	Intron	INS	-	G	G			2011-2370:2012-1299-T	g.chr13:114794252_114794253insG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron|RASA3_uc010aha.1_Intron	NM_007368	NP_031394
ABR	29	broad.mit.edu	37	17	1022582	1022583	+	Intron	INS	-	C	C	rs72063840		2011-2370:2012-1299-T	g.chr17:1022582_1022583insC	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
NFE2L2	4780	broad.mit.edu	37	2	178215322	178215323	+	Intron	DEL	TG	-	-			2011-2370:2012-1299-T	g.chr2:178215322_178215323delTG	uc002uli.3	-						LOC100130691_uc002ulk.1_Intron	NM_001145412	NP_001138884
SAPS2	9701	broad.mit.edu	37	22	50862951	50862951	+	Intron	DEL	T	-	-			2011-2370:2012-1299-T	g.chr22:50862951delT	uc003blb.1	+						SAPS2_uc003bky.1_Intron|SAPS2_uc003bkz.1_Intron|SAPS2_uc003blc.2_Intron|SAPS2_uc003bla.1_Intron	NM_014678	NP_055493
NSD1	64324	broad.mit.edu	37	5	176687263	176687263	+	Intron	DEL	G	-	-			2011-2370:2012-1299-T	g.chr5:176687263delG	uc003mfr.3	+						NSD1_uc003mft.3_Intron|NSD1_uc003mfs.1_Intron|NSD1_uc011dfx.1_Intron	NM_022455	NP_071900
ADAP1	11033	broad.mit.edu	37	7	945211	945211	+	Intron	DEL	A	-	-			2011-2370:2012-1299-T	g.chr7:945211delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
MLL3	58508	broad.mit.edu	37	7	151884573	151884581	+	Intron	DEL	TAAATATCT	-	-			2011-2370:2012-1299-T	g.chr7:151884573_151884581delTAAATATCT	uc003wla.2	-						MLL3_uc003wkz.2_Intron	NM_170606	NP_733751
ABCA4	24	broad.mit.edu	37	1	94487308	94487309	+	Intron	INS	-	T	T			2011-2371:2012-1300-T	g.chr1:94487308_94487309insT	uc001dqh.2	-							NM_000350	NP_000341
BIRC3	330	broad.mit.edu	37	11	102195804	102195804	+	Frame_Shift_Del	DEL	T	-	-			2011-2371:2012-1300-T	g.chr11:102195804delT	uc001pgx.2	+	3	786	c.564delT	c.(562-564)GATfs	p.D188fs		NM_182962	NP_892007
MC2R	4158	broad.mit.edu	37	18	13887386	13887387	+	Intron	DEL	AA	-	-			2011-2371:2012-1300-T	g.chr18:13887386_13887387delAA	uc002ksp.1	-							NM_000529	NP_000520
ADAMTS2	9509	broad.mit.edu	37	5	178650364	178650367	+	Intron	DEL	CACT	-	-	rs150578307;rs59376923		2011-2371:2012-1300-T	g.chr5:178650364_178650367delCACT	uc003mjw.2	-						ADAMTS2_uc011dgm.1_Intron	NM_014244	NP_055059
ROS1	6098	broad.mit.edu	37	6	117704316	117704316	+	Intron	DEL	G	-	-	rs4945582	by1000genomes	2011-2371:2012-1300-T	g.chr6:117704316delG	uc003pxp.1	-						ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935
PDE4DIP	9659	broad.mit.edu	37	1	144905993	144905993	+	Intron	DEL	A	-	-			2011-2373:2012-1301-T	g.chr1:144905993delA	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_Intron|PDE4DIP_uc001emd.1_Intron|PDE4DIP_uc001emb.1_Intron|PDE4DIP_uc001eme.1_Intron|PDE4DIP_uc001emf.1_Intron	NM_014644	NP_055459
RB1	5925	broad.mit.edu	37	13	49034062	49034063	+	Intron	INS	-	C	C			2011-2373:2012-1301-T	g.chr13:49034062_49034063insC	uc001vcb.2	+							NM_000321	NP_000312
RB1	5925	broad.mit.edu	37	13	49034074	49034075	+	Intron	INS	-	C	C			2011-2373:2012-1301-T	g.chr13:49034074_49034075insC	uc001vcb.2	+							NM_000321	NP_000312
RB1	5925	broad.mit.edu	37	13	49034078	49034079	+	Intron	INS	-	C	C	rs66565903		2011-2373:2012-1301-T	g.chr13:49034078_49034079insC	uc001vcb.2	+							NM_000321	NP_000312
RB1	5925	broad.mit.edu	37	13	49034082	49034083	+	Intron	INS	-	C	C			2011-2373:2012-1301-T	g.chr13:49034082_49034083insC	uc001vcb.2	+							NM_000321	NP_000312
LMF1	64788	broad.mit.edu	37	16	1000816	1000817	+	Intron	INS	-	AG	AG			2011-2373:2012-1301-T	g.chr16:1000816_1000817insAG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
LAMA1	284217	broad.mit.edu	37	18	7009159	7009170	+	Intron	DEL	GGAAGTGAAGTG	-	-	rs33969287		2011-2373:2012-1301-T	g.chr18:7009159_7009170delGGAAGTGAAGTG	uc002knm.2	-						LAMA1_uc010wzj.1_Intron	NM_005559	NP_005550
CACNG7	59284	broad.mit.edu	37	19	54425415	54425415	+	Intron	DEL	C	-	-			2011-2373:2012-1301-T	g.chr19:54425415delC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
CACNG7	59284	broad.mit.edu	37	19	54426756	54426757	+	Intron	INS	-	T	T	rs71189899;rs67726946		2011-2373:2012-1301-T	g.chr19:54426756_54426757insT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
BAGE2	85319	broad.mit.edu	37	21	11099069	11099070	+	5'Flank	INS	-	CTTT	CTTT	rs147397114		2011-2373:2012-1301-T	g.chr21:11099069_11099070insCTTT	uc002yit.1	-						BAGE_uc002yix.2_5'Flank	NM_182482	NP_872288
AJAP1	55966	broad.mit.edu	37	1	4762240	4762240	+	Intron	DEL	A	-	-			2011-2374:2012-1302-T	g.chr1:4762240delA	uc001alm.1	+						AJAP1_uc001aln.2_Intron	NM_001042478	NP_001035943
RB1	5925	broad.mit.edu	37	13	48954159	48954160	+	Intron	INS	-	T	T			2011-2374:2012-1302-T	g.chr13:48954159_48954160insT	uc001vcb.2	+							NM_000321	NP_000312
COL4A2	1284	broad.mit.edu	37	13	111133520	111133520	+	Intron	DEL	T	-	-			2011-2374:2012-1302-T	g.chr13:111133520delT	uc001vqx.2	+							NM_001846	NP_001837
TP53	7157	broad.mit.edu	37	17	7577579	7577579	+	Frame_Shift_Del	DEL	G	-	-			2011-2374:2012-1302-T	g.chr17:7577579delG	uc002gim.2	-	7	896	c.702delC	c.(700-702)TACfs	p.Y234fs	TP53_uc002gig.1_Frame_Shift_Del_p.Y234fs|TP53_uc002gih.2_Frame_Shift_Del_p.Y234fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.Y102fs|TP53_uc010cng.1_Frame_Shift_Del_p.Y102fs|TP53_uc002gii.1_Frame_Shift_Del_p.Y102fs|TP53_uc010cnh.1_Frame_Shift_Del_p.Y234fs|TP53_uc010cni.1_Frame_Shift_Del_p.Y234fs|TP53_uc002gij.2_Frame_Shift_Del_p.Y234fs|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Frame_Shift_Del_p.Y141fs|TP53_uc002gio.2_Frame_Shift_Del_p.Y102fs	NM_001126112	NP_001119584
BRCA1	672	broad.mit.edu	37	17	41256939	41256940	+	Frame_Shift_Ins	INS	-	A	A			2011-2374:2012-1302-T	g.chr17:41256939_41256940insA	uc002icq.2	-	5	478_479	c.246_247insT	c.(244-249)CTTGTTfs	p.L82fs	BRCA1_uc010whp.1_Frame_Shift_Ins_p.L35fs|BRCA1_uc010whl.1_Frame_Shift_Ins_p.L82fs|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Frame_Shift_Ins_p.L12fs|BRCA1_uc002icu.2_Frame_Shift_Ins_p.L82fs|BRCA1_uc010cyx.2_Frame_Shift_Ins_p.L35fs|BRCA1_uc002ict.2_Frame_Shift_Ins_p.L82fs|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_5'UTR|BRCA1_uc002idc.1_Frame_Shift_Ins_p.L82fs|BRCA1_uc010whr.1_Frame_Shift_Ins_p.L35fs|BRCA1_uc002idd.2_Frame_Shift_Ins_p.L82fs|BRCA1_uc002ide.1_5'UTR|BRCA1_uc010cyy.1_Frame_Shift_Ins_p.L82fs|BRCA1_uc010whs.1_Frame_Shift_Ins_p.L82fs|BRCA1_uc010cyz.2_Frame_Shift_Ins_p.L35fs|BRCA1_uc010cza.2_Frame_Shift_Ins_p.L56fs|BRCA1_uc010wht.1_Intron	NM_007294	NP_009225
SLC20A2	6575	broad.mit.edu	37	8	42309846	42309847	+	Intron	DEL	AG	-	-			2011-2374:2012-1302-T	g.chr8:42309846_42309847delAG	uc010lxl.2	-						SLC20A2_uc010lxm.2_Intron|SLC20A2_uc003xpe.2_Intron|SLC20A2_uc011lcu.1_Intron	NM_006749	NP_006740
MORN1	79906	broad.mit.edu	37	1	2258775	2258780	+	Intron	DEL	ACACAG	-	-			2012-1342:2012-1313-T	g.chr1:2258775_2258780delACACAG	uc001ajb.1	-							NM_024848	NP_079124
TINAGL1	64129	broad.mit.edu	37	1	32044322	32044323	+	Intron	DEL	GT	-	-	rs138914866	by1000genomes	2012-1342:2012-1313-T	g.chr1:32044322_32044323delGT	uc001bta.2	+						TINAGL1_uc001bsz.2_Intron|TINAGL1_uc010ogi.1_Intron|TINAGL1_uc010ogj.1_Intron|TINAGL1_uc010ogk.1_Intron	NM_022164	NP_071447
NINJ2	4815	broad.mit.edu	37	12	692236	692236	+	Intron	DEL	A	-	-			2012-1342:2012-1313-T	g.chr12:692236delA	uc001qil.2	-						NINJ2_uc010sdr.1_Intron|NINJ2_uc010sds.1_Intron	NM_016533	NP_057617
CMIP	80790	broad.mit.edu	37	16	81702888	81702888	+	Intron	DEL	A	-	-			2012-1342:2012-1313-T	g.chr16:81702888delA	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron|CMIP_uc002fgr.1_Intron	NM_198390	NP_938204
DPEP1	1800	broad.mit.edu	37	16	89701459	89701459	+	Intron	DEL	T	-	-	rs140405987		2012-1342:2012-1313-T	g.chr16:89701459delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
PITPNM3	83394	broad.mit.edu	37	17	6356445	6356446	+	3'UTR	DEL	CT	-	-			2012-1342:2012-1313-T	g.chr17:6356445_6356446delCT	uc002gdd.3	-	20					PITPNM3_uc010cln.2_3'UTR|PITPNM3_uc010clm.2_3'UTR|PITPNM3_uc002gdc.3_3'UTR	NM_031220	NP_112497
TYMS	7298	broad.mit.edu	37	18	667454	667456	+	Intron	DEL	TGA	-	-			2012-1342:2012-1313-T	g.chr18:667454_667456delTGA	uc010dka.1	+						TYMS_uc010dkb.1_Intron|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062
TPO	7173	broad.mit.edu	37	2	1484545	1484546	+	Intron	INS	-	CTG	CTG	rs112763492		2012-1342:2012-1313-T	g.chr2:1484545_1484546insCTG	uc002qww.2	+						TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Intron|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Intron	NM_000547	NP_000538
TSSC1	7260	broad.mit.edu	37	2	3340665	3340666	+	Intron	INS	-	AA	AA			2012-1342:2012-1313-T	g.chr2:3340665_3340666insAA	uc002qxj.2	-							NM_003310	NP_003301
DYSF	8291	broad.mit.edu	37	2	71845433	71845439	+	Intron	DEL	GTGGTGT	-	-	rs138496199		2012-1342:2012-1313-T	g.chr2:71845433_71845439delGTGGTGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
SLC4A5	57835	broad.mit.edu	37	2	74557753	74557754	+	Intron	INS	-	T	T	rs139880064		2012-1342:2012-1313-T	g.chr2:74557753_74557754insT	uc002skn.2	-						SLC4A5_uc002skl.2_Intron|SLC4A5_uc002skp.1_5'Flank|SLC4A5_uc002sks.1_Intron	NM_133478	NP_597812
CNNM4	26504	broad.mit.edu	37	2	97467394	97467395	+	Intron	DEL	CA	-	-			2012-1342:2012-1313-T	g.chr2:97467394_97467395delCA	uc002swx.2	+						CNNM4_uc010yuy.1_Intron	NM_020184	NP_064569
GPC1	2817	broad.mit.edu	37	2	241387786	241387787	+	Intron	INS	-	GT	GT			2012-1342:2012-1313-T	g.chr2:241387786_241387787insGT	uc002vyw.3	+							NM_002081	NP_002072
GPC1	2817	broad.mit.edu	37	2	241387787	241387788	+	Intron	INS	-	T	T			2012-1342:2012-1313-T	g.chr2:241387787_241387788insT	uc002vyw.3	+							NM_002081	NP_002072
SNPH	9751	broad.mit.edu	37	20	1258548	1258549	+	Intron	DEL	TG	-	-			2012-1342:2012-1313-T	g.chr20:1258548_1258549delTG	uc002wes.2	+						SNPH_uc002wet.2_Intron	NM_014723	NP_055538
DSCAM	1826	broad.mit.edu	37	21	42219379	42219379	+	5'Flank	DEL	T	-	-			2012-1342:2012-1313-T	g.chr21:42219379delT	uc002yyq.1	-						DSCAM_uc002yyr.1_5'Flank	NM_001389	NP_001380
TXNRD2	10587	broad.mit.edu	37	22	19897345	19897345	+	Intron	DEL	C	-	-			2012-1342:2012-1313-T	g.chr22:19897345delC	uc011ahc.1	-						TXNRD2_uc002zql.1_Intron|TXNRD2_uc002zqm.1_Intron|TXNRD2_uc002zqn.1_Intron|TXNRD2_uc002zqo.1_Intron|TXNRD2_uc002zqp.1_Intron|TXNRD2_uc002zqr.1_Intron|TXNRD2_uc010grv.1_Intron|TXNRD2_uc002zqj.1_Intron|TXNRD2_uc002zqs.2_Intron	NM_006440	NP_006431
TP63	8626	broad.mit.edu	37	3	189348969	189348973	+	5'Flank	DEL	CTCCA	-	-	rs76937731		2012-1342:2012-1313-T	g.chr3:189348969_189348973delCTCCA	uc003fry.2	+						TP63_uc003frx.2_5'Flank|TP63_uc003frz.2_5'Flank|TP63_uc010hzc.1_5'Flank	NM_003722	NP_003713
CYP2W1	54905	broad.mit.edu	37	7	1027580	1027581	+	Intron	INS	-	CT	CT			2012-1342:2012-1313-T	g.chr7:1027580_1027581insCT	uc003sjq.1	+						CYP2W1_uc003sjr.1_Intron	NM_017781	NP_060251
ETV1	2115	broad.mit.edu	37	7	14029340	14029344	+	5'UTR	DEL	TCCAA	-	-			2012-1342:2012-1313-T	g.chr7:14029340_14029344delTCCAA	uc011jxq.1	-	1					ETV1_uc003ssw.3_5'UTR|ETV1_uc003ssx.2_Intron|ETV1_uc011jxr.1_Intron|ETV1_uc011jxs.1_Intron	NM_004956	NP_004947
PTPRN2	5799	broad.mit.edu	37	7	157449830	157449832	+	Intron	DEL	CGC	-	-	rs142575214	by1000genomes	2012-1342:2012-1313-T	g.chr7:157449830_157449832delCGC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157449836	157449836	+	Intron	DEL	A	-	-	rs144968564	by1000genomes	2012-1342:2012-1313-T	g.chr7:157449836delA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157449854	157449855	+	Intron	INS	-	CA	CA			2012-1342:2012-1313-T	g.chr7:157449854_157449855insCA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
HEATR7A	727957	broad.mit.edu	37	8	145288431	145288432	+	Intron	INS	-	C	C	rs11435979;rs66838432		2012-1342:2012-1313-T	g.chr8:145288431_145288432insC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
SEMA4D	10507	broad.mit.edu	37	9	91987116	91987116	+	Intron	DEL	G	-	-			2012-1342:2012-1313-T	g.chr9:91987116delG	uc011ltm.1	-						SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqm.2_5'Flank	NM_001142287	NP_001135759
PDE4DIP	9659	broad.mit.edu	37	1	144995278	144995278	+	5'Flank	DEL	G	-	-	rs11305863		2012-1343:2012-1314-T	g.chr1:144995278delG	uc001elw.3	-						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_5'Flank|PDE4DIP_uc001ell.1_5'Flank|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001emc.1_5'Flank|PDE4DIP_uc001emd.1_5'Flank|PDE4DIP_uc001emg.1_5'Flank|PDE4DIP_uc001emh.2_Intron	NM_014644	NP_055459
TSPAN4	7106	broad.mit.edu	37	11	859364	859365	+	Intron	DEL	CC	-	-			2012-1343:2012-1314-T	g.chr11:859364_859365delCC	uc001lsd.1	+						TSPAN4_uc001lse.1_Intron|TSPAN4_uc001lsf.1_Intron|TSPAN4_uc001lsg.1_Intron|TSPAN4_uc001lsh.1_Intron|TSPAN4_uc001lsi.1_Intron|TSPAN4_uc001lsj.1_Intron|uc001lsk.1_5'Flank	NM_003271	NP_003262
TPCN2	219931	broad.mit.edu	37	11	68832375	68832376	+	Intron	DEL	TG	-	-			2012-1343:2012-1314-T	g.chr11:68832375_68832376delTG	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron	NM_139075	NP_620714
CALB2	794	broad.mit.edu	37	16	71418606	71418606	+	Intron	DEL	T	-	-			2012-1343:2012-1314-T	g.chr16:71418606delT	uc002faa.3	+						CALB2_uc010vme.1_Intron|CALB2_uc002fac.3_Intron	NM_001740	NP_001731
CALB2	794	broad.mit.edu	37	16	71418617	71418618	+	Intron	INS	-	T	T			2012-1343:2012-1314-T	g.chr16:71418617_71418618insT	uc002faa.3	+						CALB2_uc010vme.1_Intron|CALB2_uc002fac.3_Intron	NM_001740	NP_001731
CHMP1A	5119	broad.mit.edu	37	16	89721859	89721860	+	Intron	INS	-	C	C	rs66855803		2012-1343:2012-1314-T	g.chr16:89721859_89721860insC	uc002fnu.2	-						CHMP1A_uc002fnv.2_Intron|C16orf55_uc002fnw.1_5'Flank|C16orf55_uc002fnx.3_5'Flank|C16orf55_uc010vpk.1_5'Flank|C16orf55_uc002fny.1_5'Flank	NM_002768	NP_002759
MINK1	50488	broad.mit.edu	37	17	4756325	4756325	+	Intron	DEL	A	-	-			2012-1343:2012-1314-T	g.chr17:4756325delA	uc010vsl.1	+						MINK1_uc010vsk.1_Intron|MINK1_uc010vsm.1_Intron|MINK1_uc010vsn.1_Intron|MINK1_uc010vso.1_Intron	NM_153827	NP_722549
RAB37	326624	broad.mit.edu	37	17	72728962	72728963	+	Intron	INS	-	G	G			2012-1343:2012-1314-T	g.chr17:72728962_72728963insG	uc010dfu.2	+						RAB37_uc002jlc.2_Intron|RAB37_uc002jld.2_Intron	NM_175738	NP_783865
B3GNTL1	146712	broad.mit.edu	37	17	80916835	80916835	+	Intron	DEL	T	-	-			2012-1343:2012-1314-T	g.chr17:80916835delT	uc002kgg.1	-						B3GNTL1_uc002kgf.1_Intron|B3GNTL1_uc002kge.1_Intron	NM_001009905	NP_001009905
PXDN	7837	broad.mit.edu	37	2	1708331	1708331	+	Intron	DEL	G	-	-			2012-1343:2012-1314-T	g.chr2:1708331delG	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
MST1R	4486	broad.mit.edu	37	3	49941789	49941789	+	5'Flank	DEL	T	-	-	rs72461473		2012-1343:2012-1314-T	g.chr3:49941789delT	uc003cxy.3	-						MST1R_uc011bdd.1_5'Flank|MST1R_uc011bde.1_5'Flank|MST1R_uc011bdf.1_5'Flank|MST1R_uc011bdg.1_5'Flank	NM_002447	NP_002438
CHCHD6	84303	broad.mit.edu	37	3	126581777	126581777	+	Intron	DEL	C	-	-			2012-1343:2012-1314-T	g.chr3:126581777delC	uc003ejf.1	+						CHCHD6_uc010hsj.1_Intron	NM_032343	NP_115719
SLC12A7	10723	broad.mit.edu	37	5	1071171	1071171	+	Intron	DEL	G	-	-			2012-1343:2012-1314-T	g.chr5:1071171delG	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072370	1072370	+	Intron	DEL	G	-	-			2012-1343:2012-1314-T	g.chr5:1072370delG	uc003jbu.2	-							NM_006598	NP_006589
HLA-G	3135	broad.mit.edu	37	6	29926301	29926315	+	Intron	DEL	GGGACAGTACCCAGG	-	-	rs140695210;rs41271884		2012-1343:2012-1314-T	g.chr6:29926301_29926315delGGGACAGTACCCAGG	uc011dmb.1	+							NM_002127	NP_002118
ADAP1	11033	broad.mit.edu	37	7	945340	945340	+	Intron	DEL	A	-	-			2012-1343:2012-1314-T	g.chr7:945340delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946003	946004	+	Intron	INS	-	G	G	rs146541692		2012-1343:2012-1314-T	g.chr7:946003_946004insG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	157449703	157449713	+	Intron	DEL	CCACACACACA	-	-			2012-1343:2012-1314-T	g.chr7:157449703_157449713delCCACACACACA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
EHMT1	79813	broad.mit.edu	37	9	140615652	140615653	+	Intron	INS	-	C	C			2012-1343:2012-1314-T	g.chr9:140615652_140615653insC	uc011mfc.1	+						EHMT1_uc004coa.2_Intron|EHMT1_uc004cob.1_Intron	NM_024757	NP_079033
FMN2	56776	broad.mit.edu	37	1	240348390	240348390	+	Intron	DEL	C	-	-	rs74216355		2012-1344:2012-1315-T	g.chr1:240348390delC	uc010pyd.1	+						FMN2_uc010pye.1_Intron	NM_020066	NP_064450
NTM	50863	broad.mit.edu	37	11	131550612	131550613	+	Intron	DEL	CA	-	-			2012-1344:2012-1315-T	g.chr11:131550612_131550613delCA	uc010sci.1	+						NTM_uc001qgm.2_Intron|NTM_uc010sch.1_Intron	NM_001144058	NP_001137530
TSPAN9	10867	broad.mit.edu	37	12	3378417	3378418	+	Intron	INS	-	GC	GC			2012-1344:2012-1315-T	g.chr12:3378417_3378418insGC	uc001qlp.2	+							NM_006675	NP_006666
ST8SIA1	6489	broad.mit.edu	37	12	22473930	22473930	+	Intron	DEL	A	-	-			2012-1344:2012-1315-T	g.chr12:22473930delA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
COL4A2	1284	broad.mit.edu	37	13	111133970	111133970	+	Intron	DEL	T	-	-	rs67492412		2012-1344:2012-1315-T	g.chr13:111133970delT	uc001vqx.2	+							NM_001846	NP_001837
DPEP1	1800	broad.mit.edu	37	16	89701139	89701139	+	Intron	DEL	T	-	-			2012-1344:2012-1315-T	g.chr16:89701139delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701145	89701145	+	Intron	DEL	C	-	-			2012-1344:2012-1315-T	g.chr16:89701145delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
HDAC4	9759	broad.mit.edu	37	2	240268467	240268468	+	Intron	INS	-	ACCA	ACCA			2012-1344:2012-1315-T	g.chr2:240268467_240268468insACCA	uc002vyk.3	-						HDAC4_uc010fza.2_Intron	NM_006037	NP_006028
RAC2	5880	broad.mit.edu	37	22	37623576	37623576	+	Intron	DEL	C	-	-	rs116441193	by1000genomes	2012-1344:2012-1315-T	g.chr22:37623576delC	uc003arc.2	-							NM_002872	NP_002863
FBLN1	2192	broad.mit.edu	37	22	45964440	45964441	+	Intron	INS	-	G	G			2012-1344:2012-1315-T	g.chr22:45964440_45964441insG	uc003bgj.1	+							NM_006486	NP_006477
IGF2BP2	10644	broad.mit.edu	37	3	185383273	185383274	+	Intron	INS	-	AGA	AGA			2012-1344:2012-1315-T	g.chr3:185383273_185383274insAGA	uc003fpo.2	-						IGF2BP2_uc010hyi.2_Intron|IGF2BP2_uc010hyj.2_Intron|IGF2BP2_uc010hyk.2_Intron|IGF2BP2_uc010hyl.2_Intron|IGF2BP2_uc003fpp.2_Intron|IGF2BP2_uc003fpq.2_Intron	NM_006548	NP_006539
SLC12A7	10723	broad.mit.edu	37	5	1072818	1072818	+	Intron	DEL	C	-	-			2012-1344:2012-1315-T	g.chr5:1072818delC	uc003jbu.2	-							NM_006598	NP_006589
WDR60	55112	broad.mit.edu	37	7	158709123	158709124	+	Intron	DEL	TG	-	-			2012-1344:2012-1315-T	g.chr7:158709123_158709124delTG	uc003woe.3	+						WDR60_uc010lqv.2_Intron|WDR60_uc010lqw.2_Intron	NM_018051	NP_060521
PXDNL	137902	broad.mit.edu	37	8	52609202	52609211	+	Intron	DEL	CACATCCACA	-	-	rs111649196;rs78823323		2012-1344:2012-1315-T	g.chr8:52609202_52609211delCACATCCACA	uc003xqu.3	-							NM_144651	NP_653252
DHRSX	207063	broad.mit.edu	37	X	2300710	2300711	+	Intron	INS	-	CAC	CAC			2012-1344:2012-1315-T	g.chrX:2300710_2300711insCAC	uc004cqf.3	-							NM_145177	NP_660160
AGRN	375790	broad.mit.edu	37	1	966348	966349	+	Intron	DEL	TG	-	-			2012-1347:2012-1316-T	g.chr1:966348_966349delTG	uc001ack.1	+							NM_198576	NP_940978
LGR6	59352	broad.mit.edu	37	1	202173872	202173872	+	Intron	DEL	T	-	-			2012-1347:2012-1316-T	g.chr1:202173872delT	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174494	202174495	+	Intron	DEL	CC	-	-			2012-1347:2012-1316-T	g.chr1:202174494_202174495delCC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
FMN2	56776	broad.mit.edu	37	1	240348276	240348277	+	Intron	INS	-	C	C	rs28537912	by1000genomes	2012-1347:2012-1316-T	g.chr1:240348276_240348277insC	uc010pyd.1	+						FMN2_uc010pye.1_Intron	NM_020066	NP_064450
GPR123	84435	broad.mit.edu	37	10	134891926	134891926	+	Intron	DEL	T	-	-			2012-1347:2012-1316-T	g.chr10:134891926delT	uc001llw.2	+								
SNX32	254122	broad.mit.edu	37	11	65602306	65602309	+	Intron	DEL	TGTG	-	-	rs57841777		2012-1347:2012-1316-T	g.chr11:65602306_65602309delTGTG	uc001ofr.2	+						SNX32_uc009yqt.2_Intron|SNX32_uc010rop.1_Intron	NM_152760	NP_689973
FAM101A	144347	broad.mit.edu	37	12	124787358	124787359	+	Intron	INS	-	G	G	rs145051784	by1000genomes	2012-1347:2012-1316-T	g.chr12:124787358_124787359insG	uc001ugd.1	+						FAM101A_uc001uge.1_Intron	NM_181709	NP_859060
SLC7A1	6541	broad.mit.edu	37	13	30133609	30133609	+	Intron	DEL	G	-	-	rs71090264		2012-1347:2012-1316-T	g.chr13:30133609delG	uc001uso.2	-							NM_003045	NP_003036
FAM155A	728215	broad.mit.edu	37	13	108518659	108518661	+	In_Frame_Del	DEL	GCT	-	-			2012-1347:2012-1316-T	g.chr13:108518659_108518661delGCT	uc001vql.2	-	1	800_802	c.284_286delAGC	c.(283-288)CAGCGG>CGG	p.Q95del		NM_001080396	NP_001073865
FAM70B	348013	broad.mit.edu	37	13	114499408	114499409	+	Intron	INS	-	TACACACCA	TACACACCA			2012-1347:2012-1316-T	g.chr13:114499408_114499409insTACACACCA	uc001vuh.2	+							NM_182614	NP_872420
ANKRD11	29123	broad.mit.edu	37	16	89373133	89373136	+	Intron	DEL	CCAC	-	-	rs67883105;rs74215307		2012-1347:2012-1316-T	g.chr16:89373133_89373136delCCAC	uc002fmx.1	-						ANKRD11_uc002fmy.1_Intron|ANKRD11_uc002fnc.1_Intron|ANKRD11_uc002fnd.2_Intron|ANKRD11_uc002fne.2_Intron|ANKRD11_uc002fng.1_Intron|ANKRD11_uc002fnf.1_Intron	NM_013275	NP_037407
RPH3AL	9501	broad.mit.edu	37	17	137212	137213	+	Intron	INS	-	CT	CT			2012-1347:2012-1316-T	g.chr17:137212_137213insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
AKAP1	8165	broad.mit.edu	37	17	55183788	55183788	+	Frame_Shift_Del	DEL	G	-	-			2012-1347:2012-1316-T	g.chr17:55183788delG	uc002iux.2	+	2	1194	c.963delG	c.(961-963)GAGfs	p.E321fs	AKAP1_uc010wnl.1_Frame_Shift_Del_p.E321fs|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Frame_Shift_Del_p.E321fs	NM_003488	NP_003479
DYSF	8291	broad.mit.edu	37	2	71845220	71845221	+	Intron	INS	-	T	T	rs141055082	by1000genomes	2012-1347:2012-1316-T	g.chr2:71845220_71845221insT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
COL6A1	1291	broad.mit.edu	37	21	47400844	47400845	+	5'Flank	DEL	TC	-	-	rs142610988		2012-1347:2012-1316-T	g.chr21:47400844_47400845delTC	uc002zhu.1	+							NM_001848	NP_001839
FYCO1	79443	broad.mit.edu	37	3	46003070	46003070	+	Intron	DEL	A	-	-	rs34367507		2012-1347:2012-1316-T	g.chr3:46003070delA	uc003cpb.3	-						FYCO1_uc011bal.1_Intron	NM_024513	NP_078789
GAK	2580	broad.mit.edu	37	4	850121	850127	+	Intron	DEL	AGCTGCT	-	-			2012-1347:2012-1316-T	g.chr4:850121_850127delAGCTGCT	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
SLC12A7	10723	broad.mit.edu	37	5	1072505	1072506	+	Intron	INS	-	G	G			2012-1347:2012-1316-T	g.chr5:1072505_1072506insG	uc003jbu.2	-							NM_006598	NP_006589
CDH12	1010	broad.mit.edu	37	5	21755826	21755826	+	Frame_Shift_Del	DEL	T	-	-			2012-1347:2012-1316-T	g.chr5:21755826delT	uc010iuc.2	-	11	2217	c.1759delA	c.(1759-1761)ATTfs	p.I587fs	CDH12_uc011cno.1_Frame_Shift_Del_p.I547fs|CDH12_uc003jgk.2_Frame_Shift_Del_p.I587fs|uc003jgj.2_Intron	NM_004061	NP_004052
ADAMTS2	9509	broad.mit.edu	37	5	178690131	178690133	+	Intron	DEL	CCC	-	-	rs142717391;rs58920184;rs10562505		2012-1347:2012-1316-T	g.chr5:178690131_178690133delCCC	uc003mjw.2	-						ADAMTS2_uc011dgm.1_Intron	NM_014244	NP_055059
IQCE	23288	broad.mit.edu	37	7	2617305	2617305	+	Intron	DEL	G	-	-	rs111517389		2012-1347:2012-1316-T	g.chr7:2617305delG	uc003smo.3	+						IQCE_uc010ksm.1_Intron|IQCE_uc003sml.1_Intron|IQCE_uc011jvy.1_Intron|IQCE_uc011jvz.1_Intron|IQCE_uc003smk.3_Intron|IQCE_uc003smn.3_Intron	NM_152558	NP_689771
COL5A1	1289	broad.mit.edu	37	9	137577138	137577139	+	Intron	INS	-	T	T	rs140995492		2012-1347:2012-1316-T	g.chr9:137577138_137577139insT	uc004cfe.2	+							NM_000093	NP_000084
PIR	8544	broad.mit.edu	37	X	15452085	15452087	+	Intron	DEL	AGG	-	-			2012-1347:2012-1316-T	g.chrX:15452085_15452087delAGG	uc004cwu.2	-						PIR_uc004cwv.2_Intron	NM_003662	NP_003653
CHD5	26038	broad.mit.edu	37	1	6168679	6168680	+	Intron	DEL	AG	-	-			2012-1348:2012-1317-T	g.chr1:6168679_6168680delAG	uc001amb.1	-						CHD5_uc001alz.1_Intron|CHD5_uc001ama.1_Intron	NM_015557	NP_056372
NBPF1	55672	broad.mit.edu	37	1	16890815	16890815	+	Intron	DEL	A	-	-	rs56139324		2012-1348:2012-1317-T	g.chr1:16890815delA	uc009vos.1	-						uc001ayw.2_5'Flank	NM_017940	NP_060410
ANXA8	653145	broad.mit.edu	37	10	47058971	47058972	+	Intron	INS	-	CA	CA	rs144230274		2012-1348:2012-1317-T	g.chr10:47058971_47058972insCA	uc001jed.3	-								
PRSS23	11098	broad.mit.edu	37	11	86568871	86568873	+	Intron	DEL	GAA	-	-			2012-1348:2012-1317-T	g.chr11:86568871_86568873delGAA	uc001pcc.1	+						uc001pcd.2_Intron		
KIRREL3	84623	broad.mit.edu	37	11	126733393	126733394	+	Intron	INS	-	GTGCGT	GTGCGT	rs72371767		2012-1348:2012-1317-T	g.chr11:126733393_126733394insGTGCGT	uc001qea.2	-						KIRREL3_uc001qeb.2_Intron|KIRREL3_uc001qec.1_Intron|KIRREL3_uc001qed.3_Intron	NM_032531	NP_115920
KIRREL3	84623	broad.mit.edu	37	11	126733402	126733403	+	Intron	DEL	GC	-	-			2012-1348:2012-1317-T	g.chr11:126733402_126733403delGC	uc001qea.2	-						KIRREL3_uc001qeb.2_Intron|KIRREL3_uc001qec.1_Intron|KIRREL3_uc001qed.3_Intron	NM_032531	NP_115920
ETV6	2120	broad.mit.edu	37	12	12200900	12200903	+	Intron	DEL	TGTG	-	-			2012-1348:2012-1317-T	g.chr12:12200900_12200903delTGTG	uc001raa.1	+						uc001rab.1_5'Flank	NM_001987	NP_001978
KSR2	283455	broad.mit.edu	37	12	118232158	118232159	+	Intron	INS	-	CA	CA			2012-1348:2012-1317-T	g.chr12:118232158_118232159insCA	uc001two.2	-							NM_173598	NP_775869
GALNT9	50614	broad.mit.edu	37	12	132893724	132893725	+	Intron	INS	-	G	G			2012-1348:2012-1317-T	g.chr12:132893724_132893725insG	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
ATP10A	57194	broad.mit.edu	37	15	26003733	26003736	+	Intron	DEL	CTAA	-	-			2012-1348:2012-1317-T	g.chr15:26003733_26003736delCTAA	uc010ayu.2	-							NM_024490	NP_077816
DECR2	26063	broad.mit.edu	37	16	458213	458214	+	Intron	DEL	CT	-	-			2012-1348:2012-1317-T	g.chr16:458213_458214delCT	uc002chb.2	+						DECR2_uc002chc.2_Intron|DECR2_uc010bqv.2_Intron|DECR2_uc002chd.2_Intron|DECR2_uc002che.1_Intron	NM_020664	NP_065715
LMF1	64788	broad.mit.edu	37	16	1000737	1000738	+	Intron	DEL	AG	-	-			2012-1348:2012-1317-T	g.chr16:1000737_1000738delAG	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
IL34	146433	broad.mit.edu	37	16	70678839	70678840	+	5'Flank	INS	-	GAG	GAG	rs117213714	by1000genomes	2012-1348:2012-1317-T	g.chr16:70678839_70678840insGAG	uc002ezh.1	+						IL34_uc002ezi.1_5'Flank	NM_152456	NP_689669
RAB40B	10966	broad.mit.edu	37	17	80630093	80630093	+	Intron	DEL	T	-	-			2012-1348:2012-1317-T	g.chr17:80630093delT	uc002kft.2	-						RAB40B_uc002kfs.2_Intron	NM_006822	NP_006813
NOTCH3	4854	broad.mit.edu	37	19	15297861	15297862	+	Intron	INS	-	A	A			2012-1348:2012-1317-T	g.chr19:15297861_15297862insA	uc002nan.2	-						NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426
CACNG7	59284	broad.mit.edu	37	19	54428870	54428870	+	Intron	DEL	T	-	-			2012-1348:2012-1317-T	g.chr19:54428870delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
MLPH	79083	broad.mit.edu	37	2	238452098	238452099	+	Intron	DEL	TG	-	-			2012-1348:2012-1317-T	g.chr2:238452098_238452099delTG	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
MLPH	79083	broad.mit.edu	37	2	238453847	238453848	+	Intron	INS	-	C	C	rs112512868	by1000genomes	2012-1348:2012-1317-T	g.chr2:238453847_238453848insC	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
RAC2	5880	broad.mit.edu	37	22	37622923	37622923	+	Intron	DEL	A	-	-			2012-1348:2012-1317-T	g.chr22:37622923delA	uc003arc.2	-							NM_002872	NP_002863
TBC1D22A	25771	broad.mit.edu	37	22	47554663	47554664	+	Intron	DEL	AC	-	-			2012-1348:2012-1317-T	g.chr22:47554663_47554664delAC	uc003bib.2	+						TBC1D22A_uc010haf.2_Intron|TBC1D22A_uc003bic.2_Intron|TBC1D22A_uc003bie.2_Intron|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_Intron|TBC1D22A_uc003bif.2_Intron	NM_014346	NP_055161
EPHA3	2042	broad.mit.edu	37	3	89521832	89521836	+	Intron	DEL	GAAAG	-	-			2012-1348:2012-1317-T	g.chr3:89521832_89521836delGAAAG	uc003dqy.2	+						EPHA3_uc010hon.1_Intron	NM_005233	NP_005224
IFT122	55764	broad.mit.edu	37	3	129235569	129235570	+	Intron	DEL	AG	-	-			2012-1348:2012-1317-T	g.chr3:129235569_129235570delAG	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
EBF1	1879	broad.mit.edu	37	5	158526969	158526969	+	5'Flank	DEL	A	-	-			2012-1348:2012-1317-T	g.chr5:158526969delA	uc010jip.2	-						EBF1_uc011ddx.1_5'Flank|EBF1_uc003lxl.3_5'Flank|uc003lxm.1_5'Flank	NM_024007	NP_076870
TMEM181	57583	broad.mit.edu	37	6	158987478	158987480	+	Intron	DEL	TGA	-	-			2012-1348:2012-1317-T	g.chr6:158987478_158987480delTGA	uc003qrm.3	+						TMEM181_uc010kjr.1_Intron	NM_020823	NP_065874
TMEM181	57583	broad.mit.edu	37	6	158987493	158987494	+	Intron	INS	-	GG	GG			2012-1348:2012-1317-T	g.chr6:158987493_158987494insGG	uc003qrm.3	+						TMEM181_uc010kjr.1_Intron	NM_020823	NP_065874
TMEM181	57583	broad.mit.edu	37	6	158987496	158987497	+	Intron	INS	-	G	G			2012-1348:2012-1317-T	g.chr6:158987496_158987497insG	uc003qrm.3	+						TMEM181_uc010kjr.1_Intron	NM_020823	NP_065874
ADAP1	11033	broad.mit.edu	37	7	946003	946004	+	Intron	INS	-	G	G	rs146541692		2012-1348:2012-1317-T	g.chr7:946003_946004insG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
RELN	5649	broad.mit.edu	37	7	103202164	103202165	+	Intron	DEL	AG	-	-			2012-1348:2012-1317-T	g.chr7:103202164_103202165delAG	uc003vca.2	-						RELN_uc010liz.2_Intron	NM_005045	NP_005036
PTPRN2	5799	broad.mit.edu	37	7	158066377	158066378	+	Intron	INS	-	GG	GG			2012-1348:2012-1317-T	g.chr7:158066377_158066378insGG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158112363	158112364	+	Intron	INS	-	CACA	CACA			2012-1348:2012-1317-T	g.chr7:158112363_158112364insCACA	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
HOOK3	84376	broad.mit.edu	37	8	42761289	42761289	+	Intron	DEL	C	-	-			2012-1348:2012-1317-T	g.chr8:42761289delC	uc003xpr.2	+						HOOK3_uc010lxq.1_Intron	NM_032410	NP_115786
ARHGAP39	80728	broad.mit.edu	37	8	145913072	145913073	+	5'Flank	INS	-	C	C			2012-1348:2012-1317-T	g.chr8:145913072_145913073insC	uc011llk.1	-							NM_025251	NP_079527
SEMA4D	10507	broad.mit.edu	37	9	91986896	91986897	+	Intron	DEL	TC	-	-	rs138715648		2012-1348:2012-1317-T	g.chr9:91986896_91986897delTC	uc011ltm.1	-						SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqm.2_5'Flank	NM_001142287	NP_001135759
TTF1	7270	broad.mit.edu	37	9	135253969	135253970	+	Intron	INS	-	TG	TG			2012-1348:2012-1317-T	g.chr9:135253969_135253970insTG	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
PPP2R3B	28227	broad.mit.edu	37	X	299280	299280	+	Intron	DEL	C	-	-			2012-1348:2012-1317-T	g.chrX:299280delC	uc004cpg.2	-						PPP2R3B_uc004cpf.2_Intron	NM_013239	NP_037371
AGRN	375790	broad.mit.edu	37	1	966148	966149	+	Intron	DEL	TG	-	-			2012-1349:2012-1312-T	g.chr1:966148_966149delTG	uc001ack.1	+							NM_198576	NP_940978
PRDM16	63976	broad.mit.edu	37	1	3030730	3030731	+	Intron	DEL	CA	-	-			2012-1349:2012-1312-T	g.chr1:3030730_3030731delCA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3030740	3030743	+	Intron	DEL	CACA	-	-	rs59561226;rs143090172		2012-1349:2012-1312-T	g.chr1:3030740_3030743delCACA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3187225	3187225	+	Intron	DEL	A	-	-			2012-1349:2012-1312-T	g.chr1:3187225delA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3187228	3187228	+	Intron	DEL	A	-	-			2012-1349:2012-1312-T	g.chr1:3187228delA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
CABC1	56997	broad.mit.edu	37	1	227148111	227148113	+	Intron	DEL	GGC	-	-	rs116675293	by1000genomes	2012-1349:2012-1312-T	g.chr1:227148111_227148113delGGC	uc001hqm.1	+						CABC1_uc010pvp.1_Intron|CABC1_uc001hqn.1_Intron|CABC1_uc009xeq.1_Intron|CABC1_uc010pvq.1_Intron	NM_020247	NP_064632
DISC1	27185	broad.mit.edu	37	1	231869100	231869118	+	Intron	DEL	GAGTGGTGGTAGTGGTAGT	-	-			2012-1349:2012-1312-T	g.chr1:231869100_231869118delGAGTGGTGGTAGTGGTAGT	uc001huz.2	+						TSNAX-DISC1_uc010pwf.1_Intron|TSNAX-DISC1_uc010pwg.1_Intron|TSNAX-DISC1_uc010pwh.1_Intron|TSNAX-DISC1_uc010pwi.1_Intron|TSNAX-DISC1_uc010pwj.1_Intron|TSNAX-DISC1_uc010pwk.1_Intron|TSNAX-DISC1_uc010pwl.1_Intron|DISC1_uc010pwo.1_Intron|DISC1_uc010pwp.1_Intron|DISC1_uc010pwq.1_Intron|DISC1_uc010pwr.1_Intron|DISC1_uc010pws.1_Intron|DISC1_uc010pwt.1_Intron|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_Intron|DISC1_uc010pww.1_Intron|DISC1_uc010pwx.1_Intron|DISC1_uc010pwy.1_Intron|DISC1_uc010pwz.1_Intron|DISC1_uc010pxa.1_Intron|DISC1_uc001huy.2_Intron|DISC1_uc010pxb.1_Intron|DISC1_uc010pxc.1_Intron|DISC1_uc010pxd.1_Intron|DISC1_uc010pxe.1_Intron|DISC1_uc009xfr.2_Intron|DISC1_uc010pxf.1_Intron|DISC1_uc010pxg.1_Intron|DISC1_uc010pxh.1_Intron|DISC1_uc010pxi.1_Intron|DISC1_uc010pxj.1_Intron|DISC1_uc010pxk.1_Intron|DISC1_uc010pxl.1_Intron|DISC1_uc010pxm.1_Intron|DISC1_uc010pxn.1_Intron|DISC1_uc001hva.2_Intron	NM_018662	NP_061132
CNST	163882	broad.mit.edu	37	1	246783934	246783935	+	Intron	DEL	CT	-	-			2012-1349:2012-1312-T	g.chr1:246783934_246783935delCT	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
KCNMA1	3778	broad.mit.edu	37	10	79279783	79279797	+	Intron	DEL	TGCAGTGTGAGGGTG	-	-	rs111846649;rs113107311;rs150264492	by1000genomes;by1000genomes	2012-1349:2012-1312-T	g.chr10:79279783_79279797delTGCAGTGTGAGGGTG	uc001jxn.2	-						KCNMA1_uc001jxj.2_Intron|KCNMA1_uc001jxo.2_Intron|KCNMA1_uc001jxm.2_Intron|KCNMA1_uc001jxq.2_Intron	NM_001161352	NP_001154824
C10orf81	79949	broad.mit.edu	37	10	115540996	115540997	+	3'UTR	INS	-	CC	CC	rs11273863		2012-1349:2012-1312-T	g.chr10:115540996_115540997insCC	uc009xyc.1	+	13					C10orf81_uc001lar.1_3'UTR|C10orf81_uc001las.1_3'UTR|C10orf81_uc001lau.1_3'UTR|C10orf81_uc001lav.2_5'Flank		
FAT3	120114	broad.mit.edu	37	11	92438797	92438798	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr11:92438797_92438798insG	uc001pdj.3	+							NM_001008781	NP_001008781
FAM101A	144347	broad.mit.edu	37	12	124787332	124787332	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr12:124787332delG	uc001ugd.1	+						FAM101A_uc001uge.1_Intron	NM_181709	NP_859060
FAM101A	144347	broad.mit.edu	37	12	124787412	124787413	+	Intron	INS	-	A	A	rs71088995;rs66931564		2012-1349:2012-1312-T	g.chr12:124787412_124787413insA	uc001ugd.1	+						FAM101A_uc001uge.1_Intron	NM_181709	NP_859060
GPR133	283383	broad.mit.edu	37	12	131578501	131578502	+	Intron	INS	-	C	C			2012-1349:2012-1312-T	g.chr12:131578501_131578502insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
EP400	57634	broad.mit.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	CAG	CAG	rs28513925;rs34444665	by1000genomes	2012-1349:2012-1312-T	g.chr12:132547093_132547094insCAG	uc001ujn.2	+	46	8216_8217	c.8181_8182insCAG	c.(8179-8184)insCAG	p.2748_2749insQ	EP400_uc001ujl.2_In_Frame_Ins_p.2747_2748insQ|EP400_uc001ujm.2_In_Frame_Ins_p.2667_2668insQ|EP400_uc001ujp.2_5'UTR	NM_015409	NP_056224
C13orf35	400165	broad.mit.edu	37	13	113299776	113299784	+	5'Flank	DEL	GGCGAGGAT	-	-			2012-1349:2012-1312-T	g.chr13:113299776_113299784delGGCGAGGAT	uc001vsh.1	+							NM_207440	NP_997323
ATP11A	23250	broad.mit.edu	37	13	113433293	113433295	+	Intron	DEL	GAG	-	-			2012-1349:2012-1312-T	g.chr13:113433293_113433295delGAG	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
ATP11A	23250	broad.mit.edu	37	13	113433312	113433314	+	Intron	DEL	GAA	-	-	rs4998920		2012-1349:2012-1312-T	g.chr13:113433312_113433314delGAA	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron	NM_015205	NP_056020
CUL4A	8451	broad.mit.edu	37	13	113869506	113869525	+	Intron	DEL	TATGGAGGTCTGTGTGGGAG	-	-	rs67096412;rs72109483		2012-1349:2012-1312-T	g.chr13:113869506_113869525delTATGGAGGTCTGTGTGGGAG	uc010tjy.1	+						CUL4A_uc010tjx.1_Intron|CUL4A_uc001vth.2_Intron|CUL4A_uc001vtj.2_Intron	NM_001008895	NP_001008895
TFDP1	7027	broad.mit.edu	37	13	114280345	114280346	+	Intron	DEL	TC	-	-			2012-1349:2012-1312-T	g.chr13:114280345_114280346delTC	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
GRK1	6011	broad.mit.edu	37	13	114430987	114430989	+	Intron	DEL	GAG	-	-			2012-1349:2012-1312-T	g.chr13:114430987_114430989delGAG	uc010tkf.1	+							NM_002929	NP_002920
INF2	64423	broad.mit.edu	37	14	105186987	105186987	+	Intron	DEL	C	-	-			2012-1349:2012-1312-T	g.chr14:105186987delC	uc010tyi.1	+							NM_022489	NP_071934
MYO9A	4649	broad.mit.edu	37	15	72395654	72395655	+	Intron	DEL	GC	-	-			2012-1349:2012-1312-T	g.chr15:72395654_72395655delGC	uc002atl.3	-						MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Intron	NM_006901	NP_008832
MYO9A	4649	broad.mit.edu	37	15	72395659	72395659	+	Intron	DEL	A	-	-	rs150918805	by1000genomes	2012-1349:2012-1312-T	g.chr15:72395659delA	uc002atl.3	-						MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Intron	NM_006901	NP_008832
KIAA1199	57214	broad.mit.edu	37	15	81204234	81204235	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr15:81204234_81204235insG	uc002bfw.1	+						KIAA1199_uc010unn.1_Intron	NM_018689	NP_061159
KIAA1199	57214	broad.mit.edu	37	15	81204238	81204239	+	Intron	INS	-	A	A			2012-1349:2012-1312-T	g.chr15:81204238_81204239insA	uc002bfw.1	+						KIAA1199_uc010unn.1_Intron	NM_018689	NP_061159
ADAMTSL3	57188	broad.mit.edu	37	15	84598502	84598503	+	Intron	DEL	AG	-	-	rs1553645		2012-1349:2012-1312-T	g.chr15:84598502_84598503delAG	uc002bjz.3	+						ADAMTSL3_uc010bmt.1_Intron|ADAMTSL3_uc010bmu.1_Intron	NM_207517	NP_997400
PIGQ	9091	broad.mit.edu	37	16	621434	621435	+	Intron	INS	-	TG	TG	rs150855414;rs72224568	by1000genomes	2012-1349:2012-1312-T	g.chr16:621434_621435insTG	uc002cho.2	+						PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_Intron|PIGQ_uc002chn.2_Intron|PIGQ_uc010uui.1_5'Flank	NM_148920	NP_683721
RAB40C	57799	broad.mit.edu	37	16	664177	664177	+	Intron	DEL	C	-	-			2012-1349:2012-1312-T	g.chr16:664177delC	uc002chr.2	+						RAB40C_uc002chq.2_Intron	NM_021168	NP_066991
LMF1	64788	broad.mit.edu	37	16	907636	907637	+	Intron	INS	-	C	C	rs149757872		2012-1349:2012-1312-T	g.chr16:907636_907637insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908566	908567	+	Intron	INS	-	C	C			2012-1349:2012-1312-T	g.chr16:908566_908567insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908589	908590	+	Intron	INS	-	C	C			2012-1349:2012-1312-T	g.chr16:908589_908590insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908897	908898	+	Intron	DEL	GT	-	-			2012-1349:2012-1312-T	g.chr16:908897_908898delGT	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	909223	909223	+	Intron	DEL	C	-	-	rs66910933		2012-1349:2012-1312-T	g.chr16:909223delC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	909601	909601	+	Intron	DEL	C	-	-	rs74206771		2012-1349:2012-1312-T	g.chr16:909601delC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
TUSC5	286753	broad.mit.edu	37	17	1189854	1189854	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr17:1189854delG	uc002fsi.1	+							NM_172367	NP_758955
TUSC5	286753	broad.mit.edu	37	17	1189912	1189914	+	Intron	DEL	TGT	-	-	rs67856737		2012-1349:2012-1312-T	g.chr17:1189912_1189914delTGT	uc002fsi.1	+							NM_172367	NP_758955
TBC1D3	729873	broad.mit.edu	37	17	36348819	36348820	+	Intron	INS	-	T	T			2012-1349:2012-1312-T	g.chr17:36348819_36348820insT	uc002hpr.2	-						TBC1D3_uc010wdl.1_5'Flank|TBC1D3_uc002hox.2_5'Flank|TBC1D3_uc010wdm.1_5'Flank|TBC1D3_uc002hpq.2_5'Flank|TBC1D3_uc010cvj.1_5'Flank|TBC1D3_uc010cvk.2_Intron|TBC1D3_uc002hpp.2_5'Flank|TBC1D3_uc010wdn.1_Intron	NM_001123391	NP_001116863
RPTOR	57521	broad.mit.edu	37	17	78608663	78608673	+	Intron	DEL	TGTGTGCATAC	-	-	rs67330071		2012-1349:2012-1312-T	g.chr17:78608663_78608673delTGTGTGCATAC	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78867272	78867285	+	Intron	DEL	TGTACGCGCCAGGG	-	-	rs35094292;rs4315400;rs4555209		2012-1349:2012-1312-T	g.chr17:78867272_78867285delTGTACGCGCCAGGG	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78904232	78904237	+	Intron	DEL	CATCCC	-	-	rs62068526	by1000genomes	2012-1349:2012-1312-T	g.chr17:78904232_78904237delCATCCC	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78904248	78904248	+	Intron	DEL	T	-	-	rs66536164		2012-1349:2012-1312-T	g.chr17:78904248delT	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
TBCD	6904	broad.mit.edu	37	17	80807923	80807924	+	Intron	INS	-	CTCTT	CTCTT			2012-1349:2012-1312-T	g.chr17:80807923_80807924insCTCTT	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TBCD	6904	broad.mit.edu	37	17	80807929	80807938	+	Intron	DEL	GTTGGCTGTG	-	-			2012-1349:2012-1312-T	g.chr17:80807929_80807938delGTTGGCTGTG	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
ATP9B	374868	broad.mit.edu	37	18	77088179	77088180	+	Intron	INS	-	CC	CC	rs112208189		2012-1349:2012-1312-T	g.chr18:77088179_77088180insCC	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
KDM4B	23030	broad.mit.edu	37	19	5019306	5019317	+	Intron	DEL	GGTGTTGGTGTG	-	-			2012-1349:2012-1312-T	g.chr19:5019306_5019317delGGTGTTGGTGTG	uc002mbq.3	+						KDM4B_uc010xil.1_Intron|KDM4B_uc010xim.1_Intron	NM_015015	NP_055830
FBN3	84467	broad.mit.edu	37	19	8150905	8150905	+	Intron	DEL	A	-	-			2012-1349:2012-1312-T	g.chr19:8150905delA	uc002mjf.2	-						FBN3_uc002mje.2_Intron	NM_032447	NP_115823
NOTCH3	4854	broad.mit.edu	37	19	15285282	15285283	+	Intron	DEL	CA	-	-			2012-1349:2012-1312-T	g.chr19:15285282_15285283delCA	uc002nan.2	-							NM_000435	NP_000426
U2AF2	11338	broad.mit.edu	37	19	56181815	56181815	+	Intron	DEL	C	-	-			2012-1349:2012-1312-T	g.chr19:56181815delC	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
U2AF2	11338	broad.mit.edu	37	19	56181848	56181849	+	Intron	INS	-	C	C			2012-1349:2012-1312-T	g.chr19:56181848_56181849insC	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
U2AF2	11338	broad.mit.edu	37	19	56181864	56181865	+	Intron	INS	-	C	C			2012-1349:2012-1312-T	g.chr19:56181864_56181865insC	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
U2AF2	11338	broad.mit.edu	37	19	56181884	56181884	+	Intron	DEL	G	-	-	rs66506071		2012-1349:2012-1312-T	g.chr19:56181884delG	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
U2AF2	11338	broad.mit.edu	37	19	56181900	56181901	+	Intron	INS	-	G	G	rs143152939;rs67974985		2012-1349:2012-1312-T	g.chr19:56181900_56181901insG	uc002qlu.2	+						U2AF2_uc002qlt.2_Intron	NM_007279	NP_009210
SNTG2	54221	broad.mit.edu	37	2	1282831	1282832	+	Intron	DEL	CT	-	-			2012-1349:2012-1312-T	g.chr2:1282831_1282832delCT	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
DYSF	8291	broad.mit.edu	37	2	71845170	71845171	+	Intron	DEL	GT	-	-			2012-1349:2012-1312-T	g.chr2:71845170_71845171delGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845604	71845605	+	Intron	INS	-	GT	GT	rs146080337		2012-1349:2012-1312-T	g.chr2:71845604_71845605insGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845644	71845645	+	Intron	DEL	GT	-	-			2012-1349:2012-1312-T	g.chr2:71845644_71845645delGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
NFE2L2	4780	broad.mit.edu	37	2	178214803	178214804	+	Intron	INS	-	GT	GT			2012-1349:2012-1312-T	g.chr2:178214803_178214804insGT	uc002uli.3	-						LOC100130691_uc002ulk.1_Intron	NM_001145412	NP_001138884
HDAC4	9759	broad.mit.edu	37	2	240154325	240154325	+	Intron	DEL	C	-	-			2012-1349:2012-1312-T	g.chr2:240154325delC	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
HDAC4	9759	broad.mit.edu	37	2	240154605	240154605	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr2:240154605delG	uc002vyk.3	-						HDAC4_uc010fyz.1_Intron|HDAC4_uc010zoa.1_Intron|HDAC4_uc010fza.2_Intron|HDAC4_uc002vyl.1_Intron	NM_006037	NP_006028
KIF1A	547	broad.mit.edu	37	2	241752033	241752034	+	Intron	INS	-	G	G	rs111752451		2012-1349:2012-1312-T	g.chr2:241752033_241752034insG	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
KIF1A	547	broad.mit.edu	37	2	241752051	241752052	+	Intron	INS	-	A	A			2012-1349:2012-1312-T	g.chr2:241752051_241752052insA	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
THAP4	51078	broad.mit.edu	37	2	242559686	242559696	+	Intron	DEL	GTGAGTGAGTC	-	-	rs139685908;rs145259191	by1000genomes;by1000genomes	2012-1349:2012-1312-T	g.chr2:242559686_242559696delGTGAGTGAGTC	uc002wbt.2	-						THAP4_uc002wbs.2_5'Flank	NM_015963	NP_057047
ProSAPiP1	9762	broad.mit.edu	37	20	3148076	3148077	+	5'UTR	INS	-	GCTCAGCTCA	GCTCAGCTCA	rs142857640	by1000genomes	2012-1349:2012-1312-T	g.chr20:3148076_3148077insGCTCAGCTCA	uc002wia.1	-	1					ProSAPiP1_uc002wib.1_Intron	NM_014731	NP_055546
C20orf26	26074	broad.mit.edu	37	20	20337173	20337174	+	Intron	DEL	GT	-	-			2012-1349:2012-1312-T	g.chr20:20337173_20337174delGT	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20337659	20337660	+	Intron	DEL	TG	-	-			2012-1349:2012-1312-T	g.chr20:20337659_20337660delTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20338576	20338577	+	Intron	INS	-	TG	TG			2012-1349:2012-1312-T	g.chr20:20338576_20338577insTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
BMP7	655	broad.mit.edu	37	20	55793491	55793492	+	Intron	INS	-	TGTT	TGTT	rs149581669;rs34742226	by1000genomes	2012-1349:2012-1312-T	g.chr20:55793491_55793492insTGTT	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
CDH4	1002	broad.mit.edu	37	20	60140426	60140427	+	Intron	INS	-	A	A			2012-1349:2012-1312-T	g.chr20:60140426_60140427insA	uc002ybn.1	+							NM_001794	NP_001785
CDH4	1002	broad.mit.edu	37	20	60433233	60433234	+	Intron	INS	-	TGTC	TGTC	rs145658938	by1000genomes	2012-1349:2012-1312-T	g.chr20:60433233_60433234insTGTC	uc002ybn.1	+						CDH4_uc002ybp.1_Intron	NM_001794	NP_001785
CACNA1I	8911	broad.mit.edu	37	22	40014294	40014295	+	Intron	INS	-	TG	TG	rs116632682;rs140312275		2012-1349:2012-1312-T	g.chr22:40014294_40014295insTG	uc003ayc.2	+						CACNA1I_uc003ayd.2_Intron|CACNA1I_uc003aye.2_Intron|CACNA1I_uc003ayf.2_Intron	NM_021096	NP_066919
ADCY5	111	broad.mit.edu	37	3	123102773	123102778	+	Intron	DEL	CACACA	-	-			2012-1349:2012-1312-T	g.chr3:123102773_123102778delCACACA	uc003egh.1	-						ADCY5_uc003egg.1_Intron|ADCY5_uc003egi.1_Intron	NM_183357	NP_899200
ZIC1	7545	broad.mit.edu	37	3	147124643	147124644	+	5'Flank	DEL	TG	-	-			2012-1349:2012-1312-T	g.chr3:147124643_147124644delTG	uc003ewe.2	+						ZIC4_uc011bno.1_5'Flank|ZIC4_uc003ewd.1_5'Flank	NM_003412	NP_003403
MUC4	4585	broad.mit.edu	37	3	195539326	195539327	+	5'Flank	INS	-	TCAGTG	TCAGTG			2012-1349:2012-1312-T	g.chr3:195539326_195539327insTCAGTG	uc011bto.1	-						MUC4_uc003fvo.2_5'Flank|MUC4_uc003fvp.2_5'Flank|MUC4_uc010hzv.2_5'Flank	NM_018406	NP_060876
FGFR3	2261	broad.mit.edu	37	4	1809111	1809112	+	3'UTR	DEL	TG	-	-			2012-1349:2012-1312-T	g.chr4:1809111_1809112delTG	uc003gdr.3	+	18					FGFR3_uc003gdu.2_3'UTR|FGFR3_uc003gds.3_3'UTR|FGFR3_uc003gdq.3_3'UTR	NM_000142	NP_000133
ABLIM2	84448	broad.mit.edu	37	4	8133444	8133444	+	Intron	DEL	T	-	-			2012-1349:2012-1312-T	g.chr4:8133444delT	uc003gko.2	-						ABLIM2_uc003gkj.3_Intron|ABLIM2_uc003gkm.3_Intron|ABLIM2_uc003gkp.2_Intron|ABLIM2_uc003gkq.2_Intron|ABLIM2_uc003gkr.2_Intron|ABLIM2_uc003gks.3_Intron	NM_001130084	NP_001123556
DSPP	1834	broad.mit.edu	37	4	88536543	88536551	+	In_Frame_Del	DEL	ACAGCAGTG	-	-	rs111456637;rs145589857	by1000genomes	2012-1349:2012-1312-T	g.chr4:88536543_88536551delACAGCAGTG	uc003hqu.2	+	5	2849_2857	c.2729_2737delACAGCAGTG	c.(2728-2739)AACAGCAGTGAC>AAC	p.SSD914del		NM_014208	NP_055023
CEP72	55722	broad.mit.edu	37	5	648999	649000	+	Intron	INS	-	G	G	rs35526508		2012-1349:2012-1312-T	g.chr5:648999_649000insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649511	649512	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr5:649511_649512insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649791	649791	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr5:649791delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650107	650107	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr5:650107delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650241	650241	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr5:650241delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650295	650296	+	Intron	INS	-	TG	TG			2012-1349:2012-1312-T	g.chr5:650295_650296insTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650330	650331	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr5:650330_650331insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650385	650385	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr5:650385delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650451	650452	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr5:650451_650452insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650603	650603	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr5:650603delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650906	650907	+	Intron	DEL	TG	-	-			2012-1349:2012-1312-T	g.chr5:650906_650907delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650916	650916	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr5:650916delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650929	650930	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr5:650929_650930insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651026	651026	+	Intron	DEL	G	-	-			2012-1349:2012-1312-T	g.chr5:651026delG	uc003jbf.2	+							NM_018140	NP_060610
NKD2	85409	broad.mit.edu	37	5	1037067	1037067	+	Intron	DEL	T	-	-			2012-1349:2012-1312-T	g.chr5:1037067delT	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
PIK3R1	5295	broad.mit.edu	37	5	67584340	67584341	+	Intron	INS	-	CGAGC	CGAGC	rs138814985;rs72310992	by1000genomes	2012-1349:2012-1312-T	g.chr5:67584340_67584341insCGAGC	uc003jva.2	+						PIK3R1_uc003jvb.2_Intron|PIK3R1_uc003jvc.2_5'UTR|PIK3R1_uc003jvd.2_5'Flank|PIK3R1_uc003jve.2_5'Flank	NM_181523	NP_852664
SLCO4C1	353189	broad.mit.edu	37	5	101632502	101632503	+	5'Flank	INS	-	T	T	rs144652795;rs35220083	by1000genomes	2012-1349:2012-1312-T	g.chr5:101632502_101632503insT	uc003knm.2	-							NM_180991	NP_851322
COL23A1	91522	broad.mit.edu	37	5	178012657	178012658	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr5:178012657_178012658insG	uc003mje.2	-							NM_173465	NP_775736
SLC22A23	63027	broad.mit.edu	37	6	3310661	3310661	+	Intron	DEL	C	-	-			2012-1349:2012-1312-T	g.chr6:3310661delC	uc003mvm.3	-						SLC22A23_uc003mvn.3_Intron|SLC22A23_uc003mvo.3_Intron|SLC22A23_uc003mvp.1_Intron|SLC22A23_uc010jnn.2_Intron	NM_015482	NP_056297
HLA-G	3135	broad.mit.edu	37	6	29795082	29795082	+	Intron	DEL	A	-	-			2012-1349:2012-1312-T	g.chr6:29795082delA	uc003nnw.2	+						HLA-G_uc011dmb.1_5'Flank|HLA-G_uc003raj.3_Intron|HLA-G_uc003nnz.3_5'Flank|HLA-G_uc010jrn.2_5'Flank|HLA-G_uc003nny.3_5'Flank|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118
HLA-G	3135	broad.mit.edu	37	6	29854983	29854983	+	Intron	DEL	C	-	-	rs146815445		2012-1349:2012-1312-T	g.chr6:29854983delC	uc011dmb.1	+						HLA-H_uc003nod.2_5'Flank|HLA-H_uc010jro.2_5'Flank	NM_002127	NP_002118
MDGA1	266727	broad.mit.edu	37	6	37611883	37611884	+	Intron	INS	-	C	C			2012-1349:2012-1312-T	g.chr6:37611883_37611884insC	uc003onu.1	-						MDGA1_uc003onv.1_Intron	NM_153487	NP_705691
SYNE1	23345	broad.mit.edu	37	6	152685865	152685866	+	Intron	INS	-	AGGA	AGGA	rs6911574	by1000genomes	2012-1349:2012-1312-T	g.chr6:152685865_152685866insAGGA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152685873	152685873	+	Intron	DEL	A	-	-			2012-1349:2012-1312-T	g.chr6:152685873delA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
RPS6KA2	6196	broad.mit.edu	37	6	166829611	166829612	+	Intron	INS	-	TCTC	TCTC	rs59404666		2012-1349:2012-1312-T	g.chr6:166829611_166829612insTCTC	uc003qvb.1	-						RPS6KA2_uc011ego.1_Intron|RPS6KA2_uc010kkl.1_Intron|RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron|RPS6KA2_uc010kkk.1_Intron	NM_021135	NP_066958
HEATR2	54919	broad.mit.edu	37	7	782335	782336	+	Intron	DEL	AT	-	-	rs66764195		2012-1349:2012-1312-T	g.chr7:782335_782336delAT	uc010krz.1	+						HEATR2_uc003siz.2_Intron	NM_017802	NP_060272
C7orf50	84310	broad.mit.edu	37	7	1055860	1055860	+	Intron	DEL	C	-	-			2012-1349:2012-1312-T	g.chr7:1055860delC	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1055862	1055862	+	Intron	DEL	C	-	-			2012-1349:2012-1312-T	g.chr7:1055862delC	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1055925	1055926	+	Intron	DEL	GT	-	-	rs147242711	by1000genomes	2012-1349:2012-1312-T	g.chr7:1055925_1055926delGT	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1056616	1056625	+	Intron	DEL	CAGCGCACAG	-	-	rs113262391;rs74835286		2012-1349:2012-1312-T	g.chr7:1056616_1056625delCAGCGCACAG	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
PTPRN2	5799	broad.mit.edu	37	7	157863283	157863284	+	Intron	INS	-	CT	CT			2012-1349:2012-1312-T	g.chr7:157863283_157863284insCT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157863286	157863287	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr7:157863286_157863287insG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157864791	157864792	+	Intron	INS	-	G	G			2012-1349:2012-1312-T	g.chr7:157864791_157864792insG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158316431	158316433	+	Intron	DEL	GTC	-	-			2012-1349:2012-1312-T	g.chr7:158316431_158316433delGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158316488	158316490	+	Intron	DEL	GTC	-	-			2012-1349:2012-1312-T	g.chr7:158316488_158316490delGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	158316507	158316508	+	Intron	INS	-	GTC	GTC			2012-1349:2012-1312-T	g.chr7:158316507_158316508insGTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PEBP4	157310	broad.mit.edu	37	8	22623306	22623307	+	Intron	INS	-	A	A	rs61315444;rs35035196		2012-1349:2012-1312-T	g.chr8:22623306_22623307insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623307	22623308	+	Intron	INS	-	TC	TC	rs35035196;rs56184904		2012-1349:2012-1312-T	g.chr8:22623307_22623308insTC	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623337	22623338	+	Intron	INS	-	A	A	rs71834123		2012-1349:2012-1312-T	g.chr8:22623337_22623338insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623338	22623339	+	Intron	INS	-	TC	TC	rs71834123		2012-1349:2012-1312-T	g.chr8:22623338_22623339insTC	uc003xcn.1	-							NM_144962	NP_659399
ZNF16	7564	broad.mit.edu	37	8	146172247	146172247	+	Intron	DEL	T	-	-			2012-1349:2012-1312-T	g.chr8:146172247delT	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
ZNF16	7564	broad.mit.edu	37	8	146172777	146172778	+	Intron	INS	-	T	T			2012-1349:2012-1312-T	g.chr8:146172777_146172778insT	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
SHC3	53358	broad.mit.edu	37	9	91674237	91674249	+	Intron	DEL	GTGGAGGATGGTG	-	-	rs139799496	by1000genomes	2012-1349:2012-1312-T	g.chr9:91674237_91674249delGTGGAGGATGGTG	uc004aqg.2	-							NM_016848	NP_058544
COL5A1	1289	broad.mit.edu	37	9	137639678	137639679	+	Intron	INS	-	AT	AT	rs150926060;rs145402801	by1000genomes	2012-1349:2012-1312-T	g.chr9:137639678_137639679insAT	uc004cfe.2	+							NM_000093	NP_000084
NOTCH1	4851	broad.mit.edu	37	9	139403240	139403241	+	Intron	INS	-	G	G	rs149368682;rs68024424	by1000genomes	2012-1349:2012-1312-T	g.chr9:139403240_139403241insG	uc004chz.2	-						NOTCH1_uc004cia.1_Intron	NM_017617	NP_060087
CSF2RA	1438	broad.mit.edu	37	X	1387352	1387353	+	5'Flank	INS	-	CA	CA			2012-1349:2012-1312-T	g.chrX:1387352_1387353insCA	uc010nct.2	+						CSF2RA_uc011mhb.1_5'Flank|CSF2RA_uc004cpq.2_5'Flank|CSF2RA_uc004cpn.2_5'Flank|CSF2RA_uc004cpo.2_5'Flank|CSF2RA_uc010ncu.2_5'Flank|CSF2RA_uc011mhc.1_5'Flank|CSF2RA_uc004cpp.2_5'Flank	NM_001161529	NP_001155001
CSF2RA	1438	broad.mit.edu	37	X	1387373	1387374	+	5'Flank	DEL	TC	-	-			2012-1349:2012-1312-T	g.chrX:1387373_1387374delTC	uc010nct.2	+						CSF2RA_uc011mhb.1_5'Flank|CSF2RA_uc004cpq.2_5'Flank|CSF2RA_uc004cpn.2_5'Flank|CSF2RA_uc004cpo.2_5'Flank|CSF2RA_uc010ncu.2_5'Flank|CSF2RA_uc011mhc.1_5'Flank|CSF2RA_uc004cpp.2_5'Flank	NM_001161529	NP_001155001
FAIM3	9214	broad.mit.edu	37	1	207098072	207098073	+	5'Flank	INS	-	GT	GT	rs141007002	by1000genomes	2012-1351:2012-338-T	g.chr1:207098072_207098073insGT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
GRK5	2869	broad.mit.edu	37	10	121051466	121051467	+	Intron	INS	-	TCT	TCT			2012-1351:2012-338-T	g.chr10:121051466_121051467insTCT	uc001led.2	+						GRK5_uc009xzh.2_Intron|GRK5_uc010qta.1_Intron	NM_005308	NP_005299
SLC22A12	116085	broad.mit.edu	37	11	64363702	64363703	+	Intron	INS	-	A	A			2012-1351:2012-338-T	g.chr11:64363702_64363703insA	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
RIMBP2	23504	broad.mit.edu	37	12	131068771	131068771	+	Intron	DEL	T	-	-			2012-1351:2012-338-T	g.chr12:131068771delT	uc001uim.2	-								
COL4A2	1284	broad.mit.edu	37	13	111133880	111133880	+	Intron	DEL	T	-	-	rs74198691		2012-1351:2012-338-T	g.chr13:111133880delT	uc001vqx.2	+							NM_001846	NP_001837
GAS6	2621	broad.mit.edu	37	13	114536556	114536557	+	Intron	INS	-	GTGTGACAGGTCG	GTGTGACAGGTCG			2012-1351:2012-338-T	g.chr13:114536556_114536557insGTGTGACAGGTCG	uc001vud.2	-						GAS6_uc001vug.2_5'UTR|GAS6_uc001vuf.2_Intron	NM_000820	NP_000811
B2M	567	broad.mit.edu	37	15	45009522	45009523	+	Intron	INS	-	AA	AA	rs150593433;rs3042006	by1000genomes	2012-1351:2012-338-T	g.chr15:45009522_45009523insAA	uc001zuc.2	+							NM_004048	NP_004039
PHKG2	5261	broad.mit.edu	37	16	30760464	30760466	+	Intron	DEL	TGC	-	-	rs72143067		2012-1351:2012-338-T	g.chr16:30760464_30760466delTGC	uc002dzk.1	+						PHKG2_uc002dzi.1_Intron|PHKG2_uc002dzj.1_Intron|PHKG2_uc002dzl.1_Intron	NM_000294	NP_000285
BAHCC1	57597	broad.mit.edu	37	17	79390371	79390372	+	Intron	DEL	GT	-	-	rs79132913		2012-1351:2012-338-T	g.chr17:79390371_79390372delGT	uc002kaf.2	+							NM_001080519	NP_001073988
PTPRM	5797	broad.mit.edu	37	18	7692012	7692013	+	Intron	INS	-	G	G			2012-1351:2012-338-T	g.chr18:7692012_7692013insG	uc002knn.3	+						PTPRM_uc010dkv.2_Intron	NM_002845	NP_002836
KCNG2	26251	broad.mit.edu	37	18	77625340	77625341	+	Intron	INS	-	GA	GA	rs10695988		2012-1351:2012-338-T	g.chr18:77625340_77625341insGA	uc010xfl.1	+							NM_012283	NP_036415
HDGFRP2	84717	broad.mit.edu	37	19	4492958	4492959	+	Intron	INS	-	TATC	TATC			2012-1351:2012-338-T	g.chr19:4492958_4492959insTATC	uc002mao.2	+						HDGFRP2_uc002map.2_Intron|HDGFRP2_uc010dtz.1_Intron	NM_001001520	NP_001001520
SH3YL1	26751	broad.mit.edu	37	2	235414	235415	+	Intron	INS	-	GCA	GCA			2012-1351:2012-338-T	g.chr2:235414_235415insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
FBLN7	129804	broad.mit.edu	37	2	112918282	112918283	+	Intron	DEL	CA	-	-	rs5833435;rs3080966		2012-1351:2012-338-T	g.chr2:112918282_112918283delCA	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
CDH4	1002	broad.mit.edu	37	20	60140461	60140462	+	Intron	INS	-	GGTGCTCTT	GGTGCTCTT	rs58450232		2012-1351:2012-338-T	g.chr20:60140461_60140462insGGTGCTCTT	uc002ybn.1	+							NM_001794	NP_001785
COL18A1	80781	broad.mit.edu	37	21	46857234	46857235	+	Intron	INS	-	CA	CA			2012-1351:2012-338-T	g.chr21:46857234_46857235insCA	uc002zhg.2	+							NM_130445	NP_569712
COL18A1	80781	broad.mit.edu	37	21	46920816	46920818	+	Intron	DEL	GGG	-	-			2012-1351:2012-338-T	g.chr21:46920816_46920818delGGG	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron|SLC19A1_uc010gpy.1_Intron	NM_130444	NP_569711
MPPED1	758	broad.mit.edu	37	22	43828768	43828768	+	Intron	DEL	A	-	-			2012-1351:2012-338-T	g.chr22:43828768delA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
PHF21B	112885	broad.mit.edu	37	22	45280013	45280015	+	Intron	DEL	ATT	-	-	rs143123029;rs13055909		2012-1351:2012-338-T	g.chr22:45280013_45280015delATT	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
TTC38	55020	broad.mit.edu	37	22	46686484	46686484	+	Intron	DEL	A	-	-	rs71647525		2012-1351:2012-338-T	g.chr22:46686484delA	uc003bhi.2	+						TTC38_uc011aqx.1_Intron	NM_017931	NP_060401
TTC38	55020	broad.mit.edu	37	22	46686487	46686488	+	Intron	DEL	GT	-	-			2012-1351:2012-338-T	g.chr22:46686487_46686488delGT	uc003bhi.2	+						TTC38_uc011aqx.1_Intron	NM_017931	NP_060401
SENP5	205564	broad.mit.edu	37	3	196625647	196625648	+	Intron	DEL	TC	-	-			2012-1351:2012-338-T	g.chr3:196625647_196625648delTC	uc003fwz.3	+						SENP5_uc011bty.1_Intron	NM_152699	NP_689912
SH3BP2	6452	broad.mit.edu	37	4	2828332	2828333	+	Intron	DEL	TG	-	-			2012-1351:2012-338-T	g.chr4:2828332_2828333delTG	uc003gfi.3	+						SH3BP2_uc011bvp.1_Intron|SH3BP2_uc003gfj.3_Intron|SH3BP2_uc003gfk.3_Intron|SH3BP2_uc003gfl.3_Intron|SH3BP2_uc003gfm.3_5'UTR	NM_001122681	NP_001116153
SORCS2	57537	broad.mit.edu	37	4	7456222	7456223	+	Intron	DEL	GT	-	-			2012-1351:2012-338-T	g.chr4:7456222_7456223delGT	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
SORCS2	57537	broad.mit.edu	37	4	7726199	7726201	+	Intron	DEL	TGA	-	-			2012-1351:2012-338-T	g.chr4:7726199_7726201delTGA	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
TET2	54790	broad.mit.edu	37	4	106163096	106163096	+	Intron	DEL	T	-	-	rs11284258		2012-1351:2012-338-T	g.chr4:106163096delT	uc003hxk.2	+						TET2_uc011cez.1_Intron|TET2_uc003hxj.2_Intron|TET2_uc010ilp.1_3'UTR|TET2_uc003hxi.1_3'UTR	NM_001127208	NP_001120680
PALLD	23022	broad.mit.edu	37	4	169600708	169600709	+	Intron	DEL	GT	-	-			2012-1351:2012-338-T	g.chr4:169600708_169600709delGT	uc011cjx.1	+						PALLD_uc003iru.2_Intron|PALLD_uc003irv.2_Intron	NM_016081	NP_057165
SORBS2	8470	broad.mit.edu	37	4	186748908	186748913	+	Intron	DEL	CATCAC	-	-	rs139462423		2012-1351:2012-338-T	g.chr4:186748908_186748913delCATCAC	uc003iyl.2	-						SORBS2_uc003iym.2_Intron|SORBS2_uc011cky.1_Intron	NM_021069	NP_066547
FAT1	2195	broad.mit.edu	37	4	187647634	187647635	+	5'Flank	INS	-	GTCCCTAACC	GTCCCTAACC	rs146215336	by1000genomes	2012-1351:2012-338-T	g.chr4:187647634_187647635insGTCCCTAACC	uc003izf.2	-						FAT1_uc010iso.1_Translation_Start_Site	NM_005245	NP_005236
AHRR	57491	broad.mit.edu	37	5	345122	345124	+	Intron	DEL	TGA	-	-			2012-1351:2012-338-T	g.chr5:345122_345124delTGA	uc003jav.2	+						AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Intron	NM_020731	NP_065782
CEP72	55722	broad.mit.edu	37	5	649915	649916	+	Intron	DEL	TG	-	-			2012-1351:2012-338-T	g.chr5:649915_649916delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650815	650815	+	Intron	DEL	A	-	-			2012-1351:2012-338-T	g.chr5:650815delA	uc003jbf.2	+							NM_018140	NP_060610
SLC6A3	6531	broad.mit.edu	37	5	1423046	1423047	+	Intron	DEL	CA	-	-			2012-1351:2012-338-T	g.chr5:1423046_1423047delCA	uc003jck.2	-							NM_001044	NP_001035
ODZ2	57451	broad.mit.edu	37	5	166926947	166926948	+	Intron	DEL	GT	-	-			2012-1351:2012-338-T	g.chr5:166926947_166926948delGT	uc010jjd.2	+							NM_001122679	NP_001116151
HLA-G	3135	broad.mit.edu	37	6	29909770	29909772	+	Intron	DEL	AAC	-	-	rs67139508;rs71999680		2012-1351:2012-338-T	g.chr6:29909770_29909772delAAC	uc011dmb.1	+						HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'Flank|HLA-A_uc003nok.2_5'Flank|HLA-A_uc003nol.2_5'Flank|HLA-A_uc003non.2_5'Flank|HLA-A_uc003noo.2_5'Flank|HLA-A_uc010jrr.2_5'Flank|HLA-A_uc003nom.2_5'Flank|HLA-A_uc010klp.2_5'Flank|HLA-A_uc011dmc.1_5'Flank|HLA-A_uc011dmd.1_5'Flank	NM_002127	NP_002118
ADAP1	11033	broad.mit.edu	37	7	945347	945347	+	Intron	DEL	A	-	-			2012-1351:2012-338-T	g.chr7:945347delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	157524274	157524275	+	Intron	DEL	TT	-	-			2012-1351:2012-338-T	g.chr7:157524274_157524275delTT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157524340	157524341	+	Intron	DEL	TC	-	-			2012-1351:2012-338-T	g.chr7:157524340_157524341delTC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157863231	157863233	+	Intron	DEL	TGG	-	-			2012-1351:2012-338-T	g.chr7:157863231_157863233delTGG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157863256	157863256	+	Intron	DEL	G	-	-			2012-1351:2012-338-T	g.chr7:157863256delG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
PEBP4	157310	broad.mit.edu	37	8	22623306	22623307	+	Intron	INS	-	A	A	rs61315444;rs35035196		2012-1351:2012-338-T	g.chr8:22623306_22623307insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623307	22623308	+	Intron	INS	-	TC	TC	rs35035196;rs56184904		2012-1351:2012-338-T	g.chr8:22623307_22623308insTC	uc003xcn.1	-							NM_144962	NP_659399
UBAP2	55833	broad.mit.edu	37	9	34016275	34016275	+	Intron	DEL	A	-	-			2012-1351:2012-338-T	g.chr9:34016275delA	uc003ztq.1	-						UBAP2_uc011loc.1_Intron|UBAP2_uc011lod.1_Intron|UBAP2_uc011loe.1_Intron|UBAP2_uc011lof.1_Intron|UBAP2_uc011log.1_Intron|UBAP2_uc003ztr.2_Intron	NM_018449	NP_060919
UBAP2	55833	broad.mit.edu	37	9	34016282	34016283	+	Intron	DEL	GG	-	-			2012-1351:2012-338-T	g.chr9:34016282_34016283delGG	uc003ztq.1	-						UBAP2_uc011loc.1_Intron|UBAP2_uc011lod.1_Intron|UBAP2_uc011loe.1_Intron|UBAP2_uc011lof.1_Intron|UBAP2_uc011log.1_Intron|UBAP2_uc003ztr.2_Intron	NM_018449	NP_060919
UBAP2	55833	broad.mit.edu	37	9	34016287	34016287	+	Intron	DEL	A	-	-	rs145009226	by1000genomes	2012-1351:2012-338-T	g.chr9:34016287delA	uc003ztq.1	-						UBAP2_uc011loc.1_Intron|UBAP2_uc011lod.1_Intron|UBAP2_uc011loe.1_Intron|UBAP2_uc011lof.1_Intron|UBAP2_uc011log.1_Intron|UBAP2_uc003ztr.2_Intron	NM_018449	NP_060919
FANCC	2176	broad.mit.edu	37	9	98009495	98009496	+	Intron	DEL	GT	-	-			2012-1351:2012-338-T	g.chr9:98009495_98009496delGT	uc004avh.2	-						FANCC_uc004avi.3_Intron|FANCC_uc010mrm.1_Intron|FANCC_uc011lul.1_Intron	NM_000136	NP_000127
PRRX2	51450	broad.mit.edu	37	9	132482378	132482378	+	Intron	DEL	A	-	-	rs34734808		2012-1351:2012-338-T	g.chr9:132482378delA	uc004byh.2	+							NM_016307	NP_057391
TTF1	7270	broad.mit.edu	37	9	135252875	135252878	+	Intron	DEL	GTGT	-	-			2012-1351:2012-338-T	g.chr9:135252875_135252878delGTGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
COL5A1	1289	broad.mit.edu	37	9	137576972	137576973	+	Intron	INS	-	CATT	CATT	rs141729483		2012-1351:2012-338-T	g.chr9:137576972_137576973insCATT	uc004cfe.2	+							NM_000093	NP_000084
COL5A1	1289	broad.mit.edu	37	9	137577276	137577276	+	Intron	DEL	C	-	-			2012-1351:2012-338-T	g.chr9:137577276delC	uc004cfe.2	+							NM_000093	NP_000084
SHOX	6473	broad.mit.edu	37	X	583897	583901	+	5'Flank	DEL	CGAGA	-	-			2012-1351:2012-338-T	g.chrX:583897_583901delCGAGA	uc004cph.1	+						SHOX_uc004cpi.2_5'Flank	NM_000451	NP_000442
SHOX	6473	broad.mit.edu	37	X	603651	603652	+	Intron	INS	-	T	T			2012-1351:2012-338-T	g.chrX:603651_603652insT	uc004cph.1	+						SHOX_uc004cpi.2_Intron	NM_000451	NP_000442
AGRN	375790	broad.mit.edu	37	1	966012	966013	+	Intron	DEL	GA	-	-			2012-1356:2012-351-T	g.chr1:966012_966013delGA	uc001ack.1	+							NM_198576	NP_940978
AGRN	375790	broad.mit.edu	37	1	966148	966149	+	Intron	DEL	TG	-	-			2012-1356:2012-351-T	g.chr1:966148_966149delTG	uc001ack.1	+							NM_198576	NP_940978
SCNN1D	6339	broad.mit.edu	37	1	1224025	1224026	+	Intron	INS	-	CC	CC			2012-1356:2012-351-T	g.chr1:1224025_1224026insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1225515	1225516	+	Intron	DEL	TC	-	-			2012-1356:2012-351-T	g.chr1:1225515_1225516delTC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRKCZ	5590	broad.mit.edu	37	1	2079404	2079404	+	Intron	DEL	C	-	-			2012-1356:2012-351-T	g.chr1:2079404delC	uc001aiq.2	+						PRKCZ_uc001air.2_Intron|PRKCZ_uc010nyw.1_Intron|PRKCZ_uc001ais.2_Intron|PRKCZ_uc009vla.2_Intron|PRKCZ_uc010nyx.1_Intron|PRKCZ_uc009vlb.2_Intron	NM_002744	NP_002735
MORN1	79906	broad.mit.edu	37	1	2280297	2280298	+	Intron	DEL	GT	-	-			2012-1356:2012-351-T	g.chr1:2280297_2280298delGT	uc001ajb.1	-						MORN1_uc009vld.2_Intron	NM_024848	NP_079124
PRDM16	63976	broad.mit.edu	37	1	3187225	3187225	+	Intron	DEL	A	-	-			2012-1356:2012-351-T	g.chr1:3187225delA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3187228	3187228	+	Intron	DEL	A	-	-			2012-1356:2012-351-T	g.chr1:3187228delA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3193307	3193307	+	Intron	DEL	C	-	-	rs35451643		2012-1356:2012-351-T	g.chr1:3193307delC	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
CHD5	26038	broad.mit.edu	37	1	6220169	6220170	+	Intron	INS	-	AA	AA			2012-1356:2012-351-T	g.chr1:6220169_6220170insAA	uc001amb.1	-							NM_015557	NP_056372
HIVEP3	59269	broad.mit.edu	37	1	42011049	42011050	+	Intron	INS	-	ACC	ACC	rs142601818		2012-1356:2012-351-T	g.chr1:42011049_42011050insACC	uc001cgz.3	-						HIVEP3_uc001cha.3_Intron|HIVEP3_uc001cgy.2_Intron	NM_024503	NP_078779
CABC1	56997	broad.mit.edu	37	1	227148266	227148268	+	Intron	DEL	TGG	-	-			2012-1356:2012-351-T	g.chr1:227148266_227148268delTGG	uc001hqm.1	+						CABC1_uc010pvp.1_Intron|CABC1_uc001hqn.1_Intron|CABC1_uc009xeq.1_Intron|CABC1_uc010pvq.1_Intron	NM_020247	NP_064632
ADARB2	105	broad.mit.edu	37	10	1493847	1493866	+	Intron	DEL	AGGGGACACACCTGTATAAC	-	-	rs149920277;rs67493661;rs78896586;rs61834361		2012-1356:2012-351-T	g.chr10:1493847_1493866delAGGGGACACACCTGTATAAC	uc009xhq.2	-							NM_018702	NP_061172
CCDC6	8030	broad.mit.edu	37	10	61641962	61641963	+	Intron	INS	-	CCAGGGAGAA	CCAGGGAGAA			2012-1356:2012-351-T	g.chr10:61641962_61641963insCCAGGGAGAA	uc001jks.3	-							NM_005436	NP_005427
COL17A1	1308	broad.mit.edu	37	10	105795583	105795588	+	Intron	DEL	TGTGTA	-	-	rs116948433		2012-1356:2012-351-T	g.chr10:105795583_105795588delTGTGTA	uc001kxr.2	-							NM_000494	NP_000485
KNDC1	85442	broad.mit.edu	37	10	135003839	135003840	+	Intron	INS	-	AAAC	AAAC	rs113088617		2012-1356:2012-351-T	g.chr10:135003839_135003840insAAAC	uc001llz.1	+						KNDC1_uc001lma.1_Intron	NM_152643	NP_689856
CD5	921	broad.mit.edu	37	11	60867579	60867579	+	5'Flank	DEL	T	-	-			2012-1356:2012-351-T	g.chr11:60867579delT	uc009ynk.2	+							NM_014207	NP_055022
CD5	921	broad.mit.edu	37	11	60867596	60867597	+	5'Flank	DEL	TT	-	-			2012-1356:2012-351-T	g.chr11:60867596_60867597delTT	uc009ynk.2	+							NM_014207	NP_055022
CD5	921	broad.mit.edu	37	11	60867604	60867606	+	5'Flank	DEL	CAT	-	-			2012-1356:2012-351-T	g.chr11:60867604_60867606delCAT	uc009ynk.2	+							NM_014207	NP_055022
FAT3	120114	broad.mit.edu	37	11	92438792	92438792	+	Intron	DEL	G	-	-			2012-1356:2012-351-T	g.chr11:92438792delG	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438800	92438803	+	Intron	DEL	GTGA	-	-			2012-1356:2012-351-T	g.chr11:92438800_92438803delGTGA	uc001pdj.3	+							NM_001008781	NP_001008781
FAT3	120114	broad.mit.edu	37	11	92438807	92438810	+	Intron	DEL	TGGT	-	-	rs145584143	by1000genomes	2012-1356:2012-351-T	g.chr11:92438807_92438810delTGGT	uc001pdj.3	+							NM_001008781	NP_001008781
IGSF9B	22997	broad.mit.edu	37	11	133802697	133802698	+	Intron	DEL	AG	-	-			2012-1356:2012-351-T	g.chr11:133802697_133802698delAG	uc001qgx.3	-						IGSF9B_uc001qgy.1_Intron	NM_014987	NP_055802
KSR2	283455	broad.mit.edu	37	12	118210081	118210082	+	Intron	DEL	CA	-	-			2012-1356:2012-351-T	g.chr12:118210081_118210082delCA	uc001two.2	-							NM_173598	NP_775869
TMEM120B	144404	broad.mit.edu	37	12	122185579	122185580	+	Intron	INS	-	CA	CA			2012-1356:2012-351-T	g.chr12:122185579_122185580insCA	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
GPR133	283383	broad.mit.edu	37	12	131578501	131578502	+	Intron	INS	-	C	C			2012-1356:2012-351-T	g.chr12:131578501_131578502insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
COL4A2	1284	broad.mit.edu	37	13	111133880	111133880	+	Intron	DEL	T	-	-	rs74198691		2012-1356:2012-351-T	g.chr13:111133880delT	uc001vqx.2	+							NM_001846	NP_001837
TTC7B	145567	broad.mit.edu	37	14	91039930	91039930	+	Intron	DEL	C	-	-			2012-1356:2012-351-T	g.chr14:91039930delC	uc001xyp.2	-						TTC7B_uc001xyo.2_Intron|TTC7B_uc010ats.2_Intron	NM_001010854	NP_001010854
KIF26A	26153	broad.mit.edu	37	14	104631539	104631540	+	Intron	DEL	TC	-	-	rs139275359	by1000genomes	2012-1356:2012-351-T	g.chr14:104631539_104631540delTC	uc001yos.3	+							NM_015656	NP_056471
KIF26A	26153	broad.mit.edu	37	14	104631973	104631974	+	Intron	DEL	TG	-	-			2012-1356:2012-351-T	g.chr14:104631973_104631974delTG	uc001yos.3	+							NM_015656	NP_056471
KIF26A	26153	broad.mit.edu	37	14	104631988	104631989	+	Intron	INS	-	TG	TG	rs148671298	by1000genomes	2012-1356:2012-351-T	g.chr14:104631988_104631989insTG	uc001yos.3	+							NM_015656	NP_056471
INF2	64423	broad.mit.edu	37	14	105187397	105187404	+	Intron	DEL	CGTAGTCT	-	-	rs72130729;rs66700474		2012-1356:2012-351-T	g.chr14:105187397_105187404delCGTAGTCT	uc010tyi.1	+							NM_022489	NP_071934
ATP10A	57194	broad.mit.edu	37	15	26003761	26003764	+	Intron	DEL	CTAA	-	-			2012-1356:2012-351-T	g.chr15:26003761_26003764delCTAA	uc010ayu.2	-							NM_024490	NP_077816
PIGQ	9091	broad.mit.edu	37	16	621538	621539	+	Intron	INS	-	TG	TG	rs143811797;rs72288829	by1000genomes	2012-1356:2012-351-T	g.chr16:621538_621539insTG	uc002cho.2	+						PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_Intron|PIGQ_uc002chn.2_Intron|PIGQ_uc010uui.1_5'Flank	NM_148920	NP_683721
LMF1	64788	broad.mit.edu	37	16	907868	907869	+	Intron	INS	-	A	A			2012-1356:2012-351-T	g.chr16:907868_907869insA	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908029	908030	+	Intron	INS	-	C	C			2012-1356:2012-351-T	g.chr16:908029_908030insC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
LMF1	64788	broad.mit.edu	37	16	908309	908309	+	Intron	DEL	C	-	-			2012-1356:2012-351-T	g.chr16:908309delC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
KLHDC4	54758	broad.mit.edu	37	16	87772164	87772165	+	Intron	DEL	CA	-	-	rs144225892	by1000genomes	2012-1356:2012-351-T	g.chr16:87772164_87772165delCA	uc002fki.2	-						KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Intron|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_Intron	NM_017566	NP_060036
TIMM22	29928	broad.mit.edu	37	17	897438	897439	+	5'Flank	INS	-	C	C			2012-1356:2012-351-T	g.chr17:897438_897439insC	uc002fsc.2	+							NM_013337	NP_037469
ITGAE	3682	broad.mit.edu	37	17	3699403	3699404	+	Intron	INS	-	TGTG	TGTG	rs36045415;rs146559224		2012-1356:2012-351-T	g.chr17:3699403_3699404insTGTG	uc002fwo.3	-							NM_002208	NP_002199
ITGAE	3682	broad.mit.edu	37	17	3699443	3699444	+	Intron	DEL	GT	-	-	rs71155807		2012-1356:2012-351-T	g.chr17:3699443_3699444delGT	uc002fwo.3	-							NM_002208	NP_002199
RPTOR	57521	broad.mit.edu	37	17	78904126	78904131	+	Intron	DEL	CTCATC	-	-	rs71886122		2012-1356:2012-351-T	g.chr17:78904126_78904131delCTCATC	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
AATK	9625	broad.mit.edu	37	17	79114717	79114724	+	Intron	DEL	CCGTGGGA	-	-	rs55658169;rs57924480		2012-1356:2012-351-T	g.chr17:79114717_79114724delCCGTGGGA	uc010dia.2	-							NM_001080395	NP_001073864
CD7	924	broad.mit.edu	37	17	80276492	80276493	+	5'Flank	INS	-	AT	AT	rs139487339;rs67389574	by1000genomes	2012-1356:2012-351-T	g.chr17:80276492_80276493insAT	uc002kel.1	-						CD7_uc010din.2_5'Flank|CD7_uc002kem.2_5'Flank|CD7_uc010wvk.1_5'Flank	NM_006137	NP_006128
B3GNTL1	146712	broad.mit.edu	37	17	80942468	80942469	+	Intron	DEL	GT	-	-			2012-1356:2012-351-T	g.chr17:80942468_80942469delGT	uc002kgg.1	-						B3GNTL1_uc002kgf.1_Intron|B3GNTL1_uc002kge.1_Intron	NM_001009905	NP_001009905
GALR1	2587	broad.mit.edu	37	18	74970650	74970651	+	Intron	INS	-	G	G	rs142980223	by1000genomes	2012-1356:2012-351-T	g.chr18:74970650_74970651insG	uc002lms.3	+							NM_001480	NP_001471
GALR1	2587	broad.mit.edu	37	18	74970655	74970659	+	Intron	DEL	GTCAT	-	-	rs55869114		2012-1356:2012-351-T	g.chr18:74970655_74970659delGTCAT	uc002lms.3	+							NM_001480	NP_001471
MIER2	54531	broad.mit.edu	37	19	310545	310545	+	Intron	DEL	C	-	-			2012-1356:2012-351-T	g.chr19:310545delC	uc002lok.1	-							NM_017550	NP_060020
PALM	5064	broad.mit.edu	37	19	727232	727237	+	Intron	DEL	GACCCC	-	-	rs145921312		2012-1356:2012-351-T	g.chr19:727232_727237delGACCCC	uc002lpm.1	+						PALM_uc010xft.1_Intron|PALM_uc002lpn.1_Intron|PALM_uc010xfu.1_5'Flank	NM_002579	NP_002570
TCF3	6929	broad.mit.edu	37	19	1642192	1642197	+	Intron	DEL	CAGACG	-	-	rs11276687;rs10526220		2012-1356:2012-351-T	g.chr19:1642192_1642197delCAGACG	uc002ltr.2	-						TCF3_uc002ltt.3_Intron|TCF3_uc002ltq.2_Intron	NM_003200	NP_003191
PEPD	5184	broad.mit.edu	37	19	33949471	33949472	+	Intron	DEL	TA	-	-	rs61720709		2012-1356:2012-351-T	g.chr19:33949471_33949472delTA	uc002nur.3	-						PEPD_uc010xrr.1_Intron|PEPD_uc010xrs.1_Intron	NM_000285	NP_000276
PEPD	5184	broad.mit.edu	37	19	33949478	33949486	+	Intron	DEL	AACGAGTGT	-	-	rs116319783	by1000genomes	2012-1356:2012-351-T	g.chr19:33949478_33949486delAACGAGTGT	uc002nur.3	-						PEPD_uc010xrr.1_Intron|PEPD_uc010xrs.1_Intron	NM_000285	NP_000276
ZNF790	388536	broad.mit.edu	37	19	37329004	37329005	+	Intron	DEL	GC	-	-	rs3833258		2012-1356:2012-351-T	g.chr19:37329004_37329005delGC	uc002oew.2	-							NM_206894	NP_996777
ZNF790	388536	broad.mit.edu	37	19	37329018	37329031	+	Intron	DEL	ACACACACACACAT	-	-	rs56260506;rs72210281		2012-1356:2012-351-T	g.chr19:37329018_37329031delACACACACACACAT	uc002oew.2	-							NM_206894	NP_996777
TPRX1	284355	broad.mit.edu	37	19	48305053	48305053	+	Frame_Shift_Del	DEL	G	-	-			2012-1356:2012-351-T	g.chr19:48305053delG	uc002php.1	-	2	1286	c.1215delC	c.(1213-1215)CCCfs	p.P405fs		NM_198479	NP_940881
SNTG2	54221	broad.mit.edu	37	2	1285186	1285187	+	Intron	INS	-	G	G			2012-1356:2012-351-T	g.chr2:1285186_1285187insG	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
SNTG2	54221	broad.mit.edu	37	2	1285193	1285194	+	Intron	INS	-	TGTGTA	TGTGTA	rs62108102		2012-1356:2012-351-T	g.chr2:1285193_1285194insTGTGTA	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
GREB1	9687	broad.mit.edu	37	2	11776864	11776869	+	Intron	DEL	GGGCAT	-	-			2012-1356:2012-351-T	g.chr2:11776864_11776869delGGGCAT	uc002rbk.1	+						GREB1_uc002rbp.1_Intron	NM_014668	NP_055483
DYSF	8291	broad.mit.edu	37	2	71799357	71799362	+	Intron	DEL	GCACAT	-	-	rs145227800;rs111777594		2012-1356:2012-351-T	g.chr2:71799357_71799362delGCACAT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71845170	71845171	+	Intron	DEL	GT	-	-			2012-1356:2012-351-T	g.chr2:71845170_71845171delGT	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron|DYSF_uc010yqy.1_Intron|DYSF_uc010yqz.1_Intron	NM_003494	NP_003485
DGUOK	1716	broad.mit.edu	37	2	74180418	74180420	+	Intron	DEL	TCG	-	-	rs62151974		2012-1356:2012-351-T	g.chr2:74180418_74180420delTCG	uc002sjx.2	+						DGUOK_uc002sjy.2_Intron|DGUOK_uc002sjz.2_Intron	NM_080916	NP_550438
RMND5A	64795	broad.mit.edu	37	2	87719726	87719726	+	Intron	DEL	C	-	-			2012-1356:2012-351-T	g.chr2:87719726delC	uc002srs.3	+								
AGAP1	116987	broad.mit.edu	37	2	236711446	236711447	+	Intron	INS	-	TGA	TGA			2012-1356:2012-351-T	g.chr2:236711446_236711447insTGA	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
SNED1	25992	broad.mit.edu	37	2	241950696	241950704	+	Intron	DEL	TCCTGGGTT	-	-	rs72080281;rs112852501	by1000genomes	2012-1356:2012-351-T	g.chr2:241950696_241950704delTCCTGGGTT	uc002wah.1	+							NM_001080437	NP_001073906
THAP4	51078	broad.mit.edu	37	2	242559293	242559294	+	Intron	INS	-	AGTC	AGTC			2012-1356:2012-351-T	g.chr2:242559293_242559294insAGTC	uc002wbt.2	-						THAP4_uc002wbs.2_5'Flank	NM_015963	NP_057047
SNPH	9751	broad.mit.edu	37	20	1258563	1258564	+	Intron	INS	-	TG	TG			2012-1356:2012-351-T	g.chr20:1258563_1258564insTG	uc002wes.2	+						SNPH_uc002wet.2_Intron	NM_014723	NP_055538
BMP7	655	broad.mit.edu	37	20	55793491	55793492	+	Intron	INS	-	TGTT	TGTT	rs149581669;rs34742226	by1000genomes	2012-1356:2012-351-T	g.chr20:55793491_55793492insTGTT	uc010gip.1	-						BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Intron	NM_001719	NP_001710
CDH4	1002	broad.mit.edu	37	20	60140156	60140157	+	Intron	INS	-	CTGGTC	CTGGTC	rs76692330	by1000genomes	2012-1356:2012-351-T	g.chr20:60140156_60140157insCTGGTC	uc002ybn.1	+							NM_001794	NP_001785
CDH4	1002	broad.mit.edu	37	20	60140278	60140279	+	Intron	INS	-	GGT	GGT			2012-1356:2012-351-T	g.chr20:60140278_60140279insGGT	uc002ybn.1	+							NM_001794	NP_001785
CHRNA4	1137	broad.mit.edu	37	20	61988344	61988345	+	Intron	INS	-	GACCACATCGCCATAG	GACCACATCGCCATAG	rs144766544;rs150239223	by1000genomes	2012-1356:2012-351-T	g.chr20:61988344_61988345insGACCACATCGCCATAG	uc002yes.2	-						CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_Intron|CHRNA4_uc010gke.1_Intron|CHRNA4_uc002yev.1_Intron|CHRNA4_uc010gkf.1_Intron	NM_000744	NP_000735
ADARB1	104	broad.mit.edu	37	21	46529170	46529173	+	Intron	DEL	GTAT	-	-	rs147103418	by1000genomes	2012-1356:2012-351-T	g.chr21:46529170_46529173delGTAT	uc002zgy.2	+						ADARB1_uc002zgp.2_Intron|ADARB1_uc002zgr.2_Intron|ADARB1_uc002zgs.2_Intron|ADARB1_uc002zgw.2_Intron|ADARB1_uc002zgv.2_Intron|ADARB1_uc002zgt.2_Intron|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_Intron|ADARB1_uc002zgu.2_Intron	NM_015833	NP_056648
ADARB1	104	broad.mit.edu	37	21	46553824	46553825	+	Intron	INS	-	GC	GC			2012-1356:2012-351-T	g.chr21:46553824_46553825insGC	uc002zgy.2	+						ADARB1_uc002zgp.2_Intron|ADARB1_uc002zgr.2_Intron|ADARB1_uc002zgs.2_Intron|ADARB1_uc002zgw.2_Intron|ADARB1_uc002zgv.2_Intron|ADARB1_uc002zgt.2_Intron|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_Intron|ADARB1_uc002zgu.2_Intron	NM_015833	NP_056648
COL18A1	80781	broad.mit.edu	37	21	46904024	46904025	+	Intron	DEL	GC	-	-	rs66498765		2012-1356:2012-351-T	g.chr21:46904024_46904025delGC	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron	NM_130444	NP_569711
PHF21B	112885	broad.mit.edu	37	22	45280000	45280008	+	Intron	DEL	CATCATGAT	-	-	rs13055901;rs60606161		2012-1356:2012-351-T	g.chr22:45280000_45280008delCATCATGAT	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
PHF21B	112885	broad.mit.edu	37	22	45280013	45280015	+	Intron	DEL	ATT	-	-	rs143123029;rs13055909		2012-1356:2012-351-T	g.chr22:45280013_45280015delATT	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
TTLL8	164714	broad.mit.edu	37	22	50467490	50467491	+	Intron	INS	-	C	C	rs35139272		2012-1356:2012-351-T	g.chr22:50467490_50467491insC	uc011ark.1	-							NM_001080447	NP_001073916
MUC4	4585	broad.mit.edu	37	3	195539308	195539309	+	5'Flank	INS	-	TCAGTG	TCAGTG			2012-1356:2012-351-T	g.chr3:195539308_195539309insTCAGTG	uc011bto.1	-						MUC4_uc003fvo.2_5'Flank|MUC4_uc003fvp.2_5'Flank|MUC4_uc010hzv.2_5'Flank	NM_018406	NP_060876
GAK	2580	broad.mit.edu	37	4	850214	850215	+	Intron	INS	-	C	C	rs33969402		2012-1356:2012-351-T	g.chr4:850214_850215insC	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	850217	850218	+	Intron	INS	-	AG	AG	rs33927232		2012-1356:2012-351-T	g.chr4:850217_850218insAG	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
SH3BP2	6452	broad.mit.edu	37	4	2828024	2828025	+	Intron	INS	-	TG	TG	rs72349001		2012-1356:2012-351-T	g.chr4:2828024_2828025insTG	uc003gfi.3	+						SH3BP2_uc011bvp.1_Intron|SH3BP2_uc003gfj.3_Intron|SH3BP2_uc003gfk.3_Intron|SH3BP2_uc003gfl.3_Intron|SH3BP2_uc003gfm.3_5'Flank	NM_001122681	NP_001116153
SORCS2	57537	broad.mit.edu	37	4	7479087	7479096	+	Intron	DEL	GGCTGACCGT	-	-	rs62277642;rs78756513;rs79892419		2012-1356:2012-351-T	g.chr4:7479087_7479096delGGCTGACCGT	uc003gkb.3	+						SORCS2_uc011bwi.1_Intron	NM_020777	NP_065828
FSTL5	56884	broad.mit.edu	37	4	163085748	163085749	+	5'Flank	INS	-	A	A	rs111750358;rs71858319		2012-1356:2012-351-T	g.chr4:163085748_163085749insA	uc003iqh.2	-						FSTL5_uc003iqi.2_5'Flank|FSTL5_uc010iqv.2_5'Flank	NM_020116	NP_064501
MTNR1A	4543	broad.mit.edu	37	4	187462007	187462008	+	Intron	INS	-	GAAG	GAAG	rs5864998;rs34271589		2012-1356:2012-351-T	g.chr4:187462007_187462008insGAAG	uc003izd.1	-							NM_005958	NP_005949
SLC9A3	6550	broad.mit.edu	37	5	487080	487084	+	Intron	DEL	GTGAT	-	-			2012-1356:2012-351-T	g.chr5:487080_487084delGTGAT	uc003jbe.2	-						SLC9A3_uc011clx.1_Intron	NM_004174	NP_004165
CEP72	55722	broad.mit.edu	37	5	648879	648879	+	Intron	DEL	T	-	-			2012-1356:2012-351-T	g.chr5:648879delT	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	648897	648898	+	Intron	DEL	TG	-	-			2012-1356:2012-351-T	g.chr5:648897_648898delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	648960	648960	+	Intron	DEL	G	-	-			2012-1356:2012-351-T	g.chr5:648960delG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649025	649037	+	Intron	DEL	GTGACTGTGAGGT	-	-	rs144439479	by1000genomes	2012-1356:2012-351-T	g.chr5:649025_649037delGTGACTGTGAGGT	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650138	650139	+	Intron	DEL	TG	-	-			2012-1356:2012-351-T	g.chr5:650138_650139delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650330	650331	+	Intron	INS	-	G	G			2012-1356:2012-351-T	g.chr5:650330_650331insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650402	650403	+	Intron	DEL	TG	-	-			2012-1356:2012-351-T	g.chr5:650402_650403delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650580	650581	+	Intron	DEL	TG	-	-			2012-1356:2012-351-T	g.chr5:650580_650581delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651387	651387	+	Intron	DEL	G	-	-			2012-1356:2012-351-T	g.chr5:651387delG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1072464	1072464	+	Intron	DEL	T	-	-	rs66769696		2012-1356:2012-351-T	g.chr5:1072464delT	uc003jbu.2	-							NM_006598	NP_006589
PDZD2	23037	broad.mit.edu	37	5	32002764	32002765	+	Intron	DEL	AC	-	-	rs71959773		2012-1356:2012-351-T	g.chr5:32002764_32002765delAC	uc003jhl.2	+						PDZD2_uc003jhm.2_Intron|PDZD2_uc011cnx.1_Intron	NM_178140	NP_835260
SYNE1	23345	broad.mit.edu	37	6	152688715	152688715	+	Intron	DEL	A	-	-			2012-1356:2012-351-T	g.chr6:152688715delA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_5'UTR|SYNE1_uc003qov.2_Intron	NM_182961	NP_892006
RPS6KA2	6196	broad.mit.edu	37	6	166863352	166863352	+	Intron	DEL	A	-	-	rs67121736		2012-1356:2012-351-T	g.chr6:166863352delA	uc003qvb.1	-						RPS6KA2_uc011ego.1_Intron|RPS6KA2_uc010kkl.1_Intron|RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
KIF25	3834	broad.mit.edu	37	6	168444820	168444820	+	Intron	DEL	G	-	-	rs66490155		2012-1356:2012-351-T	g.chr6:168444820delG	uc003qwk.1	+						KIF25_uc003qwl.1_Intron	NM_030615	NP_085118
THBS2	7058	broad.mit.edu	37	6	169643057	169643058	+	Intron	INS	-	C	C			2012-1356:2012-351-T	g.chr6:169643057_169643058insC	uc003qwt.2	-							NM_003247	NP_003238
THBS2	7058	broad.mit.edu	37	6	169643060	169643061	+	Intron	DEL	GC	-	-			2012-1356:2012-351-T	g.chr6:169643060_169643061delGC	uc003qwt.2	-							NM_003247	NP_003238
ICA1	3382	broad.mit.edu	37	7	8192427	8192429	+	Intron	DEL	CCA	-	-			2012-1356:2012-351-T	g.chr7:8192427_8192429delCCA	uc003srm.2	-						ICA1_uc010ktr.2_Intron|ICA1_uc003srl.2_Intron|ICA1_uc003srn.3_Intron|ICA1_uc003srp.3_Intron|ICA1_uc010kts.2_Intron|ICA1_uc003srq.2_Intron|ICA1_uc003srr.2_Intron|ICA1_uc003sro.3_Intron	NM_022307	NP_071682
PTPRN2	5799	broad.mit.edu	37	7	157664694	157664697	+	Intron	DEL	ACAT	-	-	rs67241590		2012-1356:2012-351-T	g.chr7:157664694_157664697delACAT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PEBP4	157310	broad.mit.edu	37	8	22623306	22623307	+	Intron	INS	-	A	A	rs61315444;rs35035196		2012-1356:2012-351-T	g.chr8:22623306_22623307insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623307	22623308	+	Intron	INS	-	TC	TC	rs35035196;rs56184904		2012-1356:2012-351-T	g.chr8:22623307_22623308insTC	uc003xcn.1	-							NM_144962	NP_659399
MMP16	4325	broad.mit.edu	37	8	89339977	89339982	+	5'Flank	DEL	GCGCGC	-	-			2012-1356:2012-351-T	g.chr8:89339977_89339982delGCGCGC	uc003yeb.3	-						MMP16_uc003yec.2_5'Flank	NM_005941	NP_005932
RIMS2	9699	broad.mit.edu	37	8	104831719	104831719	+	5'UTR	DEL	A	-	-			2012-1356:2012-351-T	g.chr8:104831719delA	uc003ylw.2	+	1					RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylq.2_5'UTR|RIMS2_uc003ylr.2_5'UTR	NM_014677	NP_055492
TOP1MT	116447	broad.mit.edu	37	8	144404366	144404367	+	Intron	DEL	CA	-	-			2012-1356:2012-351-T	g.chr8:144404366_144404367delCA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144404673	144404673	+	Intron	DEL	C	-	-			2012-1356:2012-351-T	g.chr8:144404673delC	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144404687	144404689	+	Intron	DEL	ACA	-	-	rs145270080	by1000genomes	2012-1356:2012-351-T	g.chr8:144404687_144404689delACA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144405455	144405456	+	Intron	DEL	CA	-	-			2012-1356:2012-351-T	g.chr8:144405455_144405456delCA	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
PARP10	84875	broad.mit.edu	37	8	145055515	145055517	+	Intron	DEL	TGA	-	-	rs113774113		2012-1356:2012-351-T	g.chr8:145055515_145055517delTGA	uc003zal.3	-						PARP10_uc003zak.3_Intron|PARP10_uc011lku.1_Intron|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Intron	NM_032789	NP_116178
ZNF16	7564	broad.mit.edu	37	8	146172393	146172394	+	Intron	INS	-	G	G			2012-1356:2012-351-T	g.chr8:146172393_146172394insG	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
FAM125B	89853	broad.mit.edu	37	9	129246803	129246805	+	Intron	DEL	CTT	-	-	rs35528692;rs35371157		2012-1356:2012-351-T	g.chr9:129246803_129246805delCTT	uc004bqh.1	+						FAM125B_uc011lzy.1_Intron|FAM125B_uc010mxd.2_Intron	NM_033446	NP_258257
POMT1	10585	broad.mit.edu	37	9	134391543	134391544	+	Intron	INS	-	CTTC	CTTC	rs146610882	by1000genomes	2012-1356:2012-351-T	g.chr9:134391543_134391544insCTTC	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
TTF1	7270	broad.mit.edu	37	9	135253040	135253041	+	Intron	DEL	GT	-	-	rs148102891	by1000genomes	2012-1356:2012-351-T	g.chr9:135253040_135253041delGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTF1	7270	broad.mit.edu	37	9	135253457	135253459	+	Intron	DEL	GTG	-	-			2012-1356:2012-351-T	g.chr9:135253457_135253459delGTG	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
NACC2	138151	broad.mit.edu	37	9	138916002	138916007	+	Intron	DEL	GTGTGT	-	-	rs71507095		2012-1356:2012-351-T	g.chr9:138916002_138916007delGTGTGT	uc004cgw.2	-						NACC2_uc010nbh.2_Intron	NM_144653	NP_653254
NOTCH1	4851	broad.mit.edu	37	9	139408959	139408960	+	Splice_Site	INS	-	A	A			2012-1356:2012-351-T	g.chr9:139408959_139408960insA	uc004chz.2	-	13	2207	c.2207_splice	c.e13+1	p.G736_splice	NOTCH1_uc004cia.1_5'Flank	NM_017617	NP_060087
EXD3	54932	broad.mit.edu	37	9	140223586	140223586	+	Intron	DEL	A	-	-			2012-1356:2012-351-T	g.chr9:140223586delA	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
OPHN1	4983	broad.mit.edu	37	X	67459062	67459062	+	Intron	DEL	G	-	-	rs67901004		2012-1356:2012-351-T	g.chrX:67459062delG	uc004dww.3	-						OPHN1_uc011mpg.1_Intron|OPHN1_uc004dwx.2_Intron	NM_002547	NP_002538
CNST	163882	broad.mit.edu	37	1	246783720	246783721	+	Intron	DEL	CT	-	-			2012-693:2012-1306-T	g.chr1:246783720_246783721delCT	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
SLC22A12	116085	broad.mit.edu	37	11	64363561	64363562	+	Intron	INS	-	ATGG	ATGG	rs146602952		2012-693:2012-1306-T	g.chr11:64363561_64363562insATGG	uc001oam.1	+						SLC22A12_uc009ypr.1_Intron|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Intron	NM_144585	NP_653186
GPR133	283383	broad.mit.edu	37	12	131578501	131578502	+	Intron	INS	-	C	C			2012-693:2012-1306-T	g.chr12:131578501_131578502insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
COL4A2	1284	broad.mit.edu	37	13	111133880	111133880	+	Intron	DEL	T	-	-	rs74198691		2012-693:2012-1306-T	g.chr13:111133880delT	uc001vqx.2	+							NM_001846	NP_001837
ATP11A	23250	broad.mit.edu	37	13	113469555	113469555	+	Intron	DEL	A	-	-			2012-693:2012-1306-T	g.chr13:113469555delA	uc001vsi.3	+						ATP11A_uc001vsj.3_Intron|ATP11A_uc001vsm.1_Intron	NM_015205	NP_056020
RIN3	79890	broad.mit.edu	37	14	93106707	93106710	+	Intron	DEL	CTGA	-	-			2012-693:2012-1306-T	g.chr14:93106707_93106710delCTGA	uc001yap.2	+						RIN3_uc010auk.2_Intron|RIN3_uc001yaq.2_Intron	NM_024832	NP_079108
NTRK3	4916	broad.mit.edu	37	15	88476459	88476459	+	Intron	DEL	G	-	-			2012-693:2012-1306-T	g.chr15:88476459delG	uc002bme.1	-						NTRK3_uc002bmh.2_Intron|NTRK3_uc002bmf.1_Intron|NTRK3_uc010upl.1_Intron|NTRK3_uc010bnh.1_Intron	NM_001012338	NP_001012338
LMF1	64788	broad.mit.edu	37	16	964649	964650	+	Intron	INS	-	TCC	TCC	rs71992005		2012-693:2012-1306-T	g.chr16:964649_964650insTCC	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
DPEP1	1800	broad.mit.edu	37	16	89701411	89701411	+	Intron	DEL	T	-	-			2012-693:2012-1306-T	g.chr16:89701411delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
TBC1D16	125058	broad.mit.edu	37	17	77998154	77998155	+	Intron	INS	-	CAC	CAC	rs144518941		2012-693:2012-1306-T	g.chr17:77998154_77998155insCAC	uc002jxj.2	-							NM_019020	NP_061893
SNTG2	54221	broad.mit.edu	37	2	1112724	1112739	+	Intron	DEL	CTGGTGTGTGGGTGCT	-	-	rs76867340;rs73154609		2012-693:2012-1306-T	g.chr2:1112724_1112739delCTGGTGTGTGGGTGCT	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
PCBP3	54039	broad.mit.edu	37	21	47234941	47234942	+	Intron	INS	-	AGT	AGT			2012-693:2012-1306-T	g.chr21:47234941_47234942insAGT	uc010gqb.2	+							NM_020528	NP_065389
DSPP	1834	broad.mit.edu	37	4	88536546	88536551	+	In_Frame_Del	DEL	GCAGTG	-	-	rs145589857	by1000genomes	2012-693:2012-1306-T	g.chr4:88536546_88536551delGCAGTG	uc003hqu.2	+	5	2852_2857	c.2732_2737delGCAGTG	c.(2731-2739)AGCAGTGAC>AAC	p.911_913SSD>N		NM_014208	NP_055023
NKD2	85409	broad.mit.edu	37	5	1026188	1026189	+	Intron	INS	-	A	A	rs67590304		2012-693:2012-1306-T	g.chr5:1026188_1026189insA	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
MDGA1	266727	broad.mit.edu	37	6	37611902	37611902	+	Intron	DEL	A	-	-	rs146272501	by1000genomes	2012-693:2012-1306-T	g.chr6:37611902delA	uc003onu.1	-						MDGA1_uc003onv.1_Intron	NM_153487	NP_705691
RPS6KA2	6196	broad.mit.edu	37	6	166995598	166995598	+	Intron	DEL	G	-	-			2012-693:2012-1306-T	g.chr6:166995598delG	uc003qvb.1	-						RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
ADAP1	11033	broad.mit.edu	37	7	945661	945661	+	Intron	DEL	A	-	-	rs147688496	by1000genomes	2012-693:2012-1306-T	g.chr7:945661delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	945697	945697	+	Intron	DEL	A	-	-			2012-693:2012-1306-T	g.chr7:945697delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	157568938	157568939	+	Intron	INS	-	C	C	rs149422515	by1000genomes	2012-693:2012-1306-T	g.chr7:157568938_157568939insC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
TRAPPC9	83696	broad.mit.edu	37	8	141167372	141167372	+	Intron	DEL	T	-	-			2012-693:2012-1306-T	g.chr8:141167372delT	uc003yvj.2	-						TRAPPC9_uc003yvh.2_Intron|TRAPPC9_uc010mel.1_Intron|TRAPPC9_uc003yvi.1_Intron	NM_001160372	NP_001153844
AGRN	375790	broad.mit.edu	37	1	965052	965057	+	Intron	DEL	TGTGTG	-	-	rs36212580;rs140315748;rs138003074		2012-695:2012-1303-T	g.chr1:965052_965057delTGTGTG	uc001ack.1	+							NM_198576	NP_940978
AGRN	375790	broad.mit.edu	37	1	965757	965758	+	Intron	DEL	AT	-	-	rs149475096		2012-695:2012-1303-T	g.chr1:965757_965758delAT	uc001ack.1	+							NM_198576	NP_940978
PRDM16	63976	broad.mit.edu	37	1	3187225	3187225	+	Intron	DEL	A	-	-			2012-695:2012-1303-T	g.chr1:3187225delA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3187228	3187228	+	Intron	DEL	A	-	-			2012-695:2012-1303-T	g.chr1:3187228delA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
MTOR	2475	broad.mit.edu	37	1	11300490	11300490	+	Frame_Shift_Del	DEL	A	-	-			2012-695:2012-1303-T	g.chr1:11300490delA	uc001asd.2	-	11	1777	c.1656delT	c.(1654-1656)CTTfs	p.L552fs		NM_004958	NP_004949
PTCHD2	57540	broad.mit.edu	37	1	11582594	11582595	+	Intron	INS	-	A	A			2012-695:2012-1303-T	g.chr1:11582594_11582595insA	uc001ash.3	+						PTCHD2_uc001asi.1_Intron	NM_020780	NP_065831
PTCHD2	57540	broad.mit.edu	37	1	11582598	11582598	+	Intron	DEL	G	-	-			2012-695:2012-1303-T	g.chr1:11582598delG	uc001ash.3	+						PTCHD2_uc001asi.1_Intron	NM_020780	NP_065831
NBPF1	55672	broad.mit.edu	37	1	16892272	16892273	+	Frame_Shift_Ins	INS	-	T	T			2012-695:2012-1303-T	g.chr1:16892272_16892273insT	uc009vos.1	-	28	4032_4033	c.3144_3145insA	c.(3142-3147)GTAGAGfs	p.V1048fs	uc001ayw.2_5'Flank	NM_017940	NP_060410
NBPF1	55672	broad.mit.edu	37	1	16892277	16892277	+	Frame_Shift_Del	DEL	G	-	-			2012-695:2012-1303-T	g.chr1:16892277delG	uc009vos.1	-	28	4028	c.3140delC	c.(3139-3141)GCAfs	p.A1047fs	uc001ayw.2_5'Flank	NM_017940	NP_060410
ASH1L	55870	broad.mit.edu	37	1	155314069	155314069	+	Intron	DEL	T	-	-			2012-695:2012-1303-T	g.chr1:155314069delT	uc009wqq.2	-						RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Intron	NM_018489	NP_060959
FAIM3	9214	broad.mit.edu	37	1	207097953	207097954	+	5'Flank	INS	-	CTCT	CTCT			2012-695:2012-1303-T	g.chr1:207097953_207097954insCTCT	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
CABC1	56997	broad.mit.edu	37	1	227143266	227143267	+	Intron	INS	-	CT	CT			2012-695:2012-1303-T	g.chr1:227143266_227143267insCT	uc001hqm.1	+						CABC1_uc010pvp.1_Intron|CABC1_uc001hqn.1_Intron|CABC1_uc009xeq.1_Intron|CABC1_uc010pvq.1_Intron	NM_020247	NP_064632
MGMT	4255	broad.mit.edu	37	10	131326609	131326610	+	Intron	INS	-	GT	GT	rs150159700;rs144907665	by1000genomes	2012-695:2012-1303-T	g.chr10:131326609_131326610insGT	uc001lkh.2	+							NM_002412	NP_002403
JAKMIP3	282973	broad.mit.edu	37	10	133972724	133972725	+	Intron	DEL	AT	-	-	rs66512429		2012-695:2012-1303-T	g.chr10:133972724_133972725delAT	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
LRRC27	80313	broad.mit.edu	37	10	134172152	134172154	+	Intron	DEL	AGT	-	-	rs71982207		2012-695:2012-1303-T	g.chr10:134172152_134172154delAGT	uc010quw.1	+						LRRC27_uc001llg.2_Intron|LRRC27_uc001lli.2_Intron|LRRC27_uc001llj.2_Intron|LRRC27_uc001llk.3_Intron	NM_030626	NP_085129
ODF3	113746	broad.mit.edu	37	11	196532	196532	+	5'Flank	DEL	A	-	-	rs111465659	by1000genomes	2012-695:2012-1303-T	g.chr11:196532delA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
CTSD	1509	broad.mit.edu	37	11	1775771	1775772	+	Intron	INS	-	G	G			2012-695:2012-1303-T	g.chr11:1775771_1775772insG	uc001luc.1	-						CTSD_uc009yda.1_Intron	NM_001909	NP_001900
KIRREL3	84623	broad.mit.edu	37	11	126733396	126733403	+	Intron	DEL	GTGAGTGC	-	-			2012-695:2012-1303-T	g.chr11:126733396_126733403delGTGAGTGC	uc001qea.2	-						KIRREL3_uc001qeb.2_Intron|KIRREL3_uc001qec.1_Intron|KIRREL3_uc001qed.3_Intron	NM_032531	NP_115920
TSPAN9	10867	broad.mit.edu	37	12	3307313	3307313	+	Intron	DEL	C	-	-			2012-695:2012-1303-T	g.chr12:3307313delC	uc001qlp.2	+							NM_006675	NP_006666
GPR133	283383	broad.mit.edu	37	12	131578555	131578556	+	Intron	INS	-	C	C			2012-695:2012-1303-T	g.chr12:131578555_131578556insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
GRTP1	79774	broad.mit.edu	37	13	113986709	113986710	+	Intron	DEL	CA	-	-			2012-695:2012-1303-T	g.chr13:113986709_113986710delCA	uc001vtn.2	-						GRTP1_uc010tkb.1_Intron|GRTP1_uc010tkc.1_Intron	NM_024719	NP_078995
TFDP1	7027	broad.mit.edu	37	13	114279707	114279708	+	Intron	INS	-	TC	TC			2012-695:2012-1303-T	g.chr13:114279707_114279708insTC	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
TTC7B	145567	broad.mit.edu	37	14	91039947	91039948	+	Intron	INS	-	C	C			2012-695:2012-1303-T	g.chr14:91039947_91039948insC	uc001xyp.2	-						TTC7B_uc001xyo.2_Intron|TTC7B_uc010ats.2_Intron	NM_001010854	NP_001010854
GPR56	9289	broad.mit.edu	37	16	57678819	57678820	+	Intron	INS	-	CT	CT	rs145649635	by1000genomes	2012-695:2012-1303-T	g.chr16:57678819_57678820insCT	uc002emb.2	+						GPR56_uc002elz.1_Intron|GPR56_uc002ema.1_Intron|GPR56_uc002emc.2_Intron|GPR56_uc002emf.2_Intron|GPR56_uc010vhs.1_Intron|GPR56_uc002emd.2_Intron|GPR56_uc002eme.2_Intron|GPR56_uc010vht.1_Intron|GPR56_uc002emg.3_Intron|GPR56_uc010vhu.1_Intron	NM_005682	NP_005673
BANP	54971	broad.mit.edu	37	16	88086937	88086939	+	Intron	DEL	CAT	-	-			2012-695:2012-1303-T	g.chr16:88086937_88086939delCAT	uc002fkr.2	+						BANP_uc002fkp.2_Intron|BANP_uc002fkq.2_Intron|BANP_uc010vow.1_Intron|BANP_uc002fks.3_Intron	NM_079837	NP_524576
CPNE7	27132	broad.mit.edu	37	16	89654562	89654563	+	Intron	INS	-	C	C			2012-695:2012-1303-T	g.chr16:89654562_89654563insC	uc002fnp.2	+						CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242
DPEP1	1800	broad.mit.edu	37	16	89701139	89701139	+	Intron	DEL	T	-	-			2012-695:2012-1303-T	g.chr16:89701139delT	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
DPEP1	1800	broad.mit.edu	37	16	89701145	89701145	+	Intron	DEL	C	-	-			2012-695:2012-1303-T	g.chr16:89701145delC	uc010cin.2	+						DPEP1_uc002fnr.3_Intron|DPEP1_uc002fns.3_Intron	NM_001128141	NP_001121613
TIMM22	29928	broad.mit.edu	37	17	897545	897546	+	5'Flank	INS	-	C	C	rs147504264;rs71933939		2012-695:2012-1303-T	g.chr17:897545_897546insC	uc002fsc.2	+							NM_013337	NP_037469
ITGAE	3682	broad.mit.edu	37	17	3699403	3699404	+	Intron	INS	-	TGTG	TGTG	rs36045415;rs146559224		2012-695:2012-1303-T	g.chr17:3699403_3699404insTGTG	uc002fwo.3	-							NM_002208	NP_002199
9-Sep	10801	broad.mit.edu	37	17	75480344	75480345	+	Intron	INS	-	GG	GG			2012-695:2012-1303-T	g.chr17:75480344_75480345insGG	uc002jts.3	+						SEPT9_uc010wtk.1_Intron|SEPT9_uc002jtt.3_Intron|SEPT9_uc002jtu.3_Intron|SEPT9_uc002jtv.2_Intron|SEPT9_uc002jtw.2_Intron|SEPT9_uc010wtl.1_Intron|SEPT9_uc002jty.3_Intron|SEPT9_uc010wtm.1_Intron|SEPT9_uc010wtn.1_Intron|SEPT9_uc010dhd.2_Intron	NM_001113491	NP_001106963
RPTOR	57521	broad.mit.edu	37	17	78608400	78608410	+	Intron	DEL	GTACTGTGTGT	-	-	rs72304965		2012-695:2012-1303-T	g.chr17:78608400_78608410delGTACTGTGTGT	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
SLC38A10	124565	broad.mit.edu	37	17	79223326	79223326	+	Intron	DEL	G	-	-			2012-695:2012-1303-T	g.chr17:79223326delG	uc002jzz.1	-						SLC38A10_uc002jzy.1_Intron	NM_001037984	NP_001033073
TBCD	6904	broad.mit.edu	37	17	80807802	80807803	+	Intron	INS	-	GCTC	GCTC			2012-695:2012-1303-T	g.chr17:80807802_80807803insGCTC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TBCD	6904	broad.mit.edu	37	17	80807804	80807805	+	Intron	INS	-	C	C			2012-695:2012-1303-T	g.chr17:80807804_80807805insC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
PQLC1	80148	broad.mit.edu	37	18	77680275	77680275	+	Intron	DEL	A	-	-			2012-695:2012-1303-T	g.chr18:77680275delA	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
PALM	5064	broad.mit.edu	37	19	727262	727266	+	Intron	DEL	AACCT	-	-	rs117394995		2012-695:2012-1303-T	g.chr19:727262_727266delAACCT	uc002lpm.1	+						PALM_uc010xft.1_Intron|PALM_uc002lpn.1_Intron|PALM_uc010xfu.1_5'Flank	NM_002579	NP_002570
SNTG2	54221	broad.mit.edu	37	2	1285013	1285014	+	Intron	INS	-	TGTA	TGTA			2012-695:2012-1303-T	g.chr2:1285013_1285014insTGTA	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
PXDN	7837	broad.mit.edu	37	2	1723908	1723911	+	Intron	DEL	AAGA	-	-	rs140892741;rs150275355	by1000genomes;by1000genomes	2012-695:2012-1303-T	g.chr2:1723908_1723911delAAGA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
RMND5A	64795	broad.mit.edu	37	2	87651220	87651221	+	Intron	INS	-	A	A			2012-695:2012-1303-T	g.chr2:87651220_87651221insA	uc002srs.3	+								
SNPH	9751	broad.mit.edu	37	20	1258392	1258393	+	Intron	DEL	TG	-	-			2012-695:2012-1303-T	g.chr20:1258392_1258393delTG	uc002wes.2	+						SNPH_uc002wet.2_Intron	NM_014723	NP_055538
C20orf26	26074	broad.mit.edu	37	20	20338676	20338677	+	Intron	INS	-	GT	GT	rs113150957	by1000genomes	2012-695:2012-1303-T	g.chr20:20338676_20338677insGT	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
TTLL8	164714	broad.mit.edu	37	22	50467490	50467491	+	Intron	INS	-	C	C	rs35139272		2012-695:2012-1303-T	g.chr22:50467490_50467491insC	uc011ark.1	-							NM_001080447	NP_001073916
GAK	2580	broad.mit.edu	37	4	850185	850185	+	Intron	DEL	A	-	-			2012-695:2012-1303-T	g.chr4:850185delA	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	850340	850342	+	Intron	DEL	CAC	-	-			2012-695:2012-1303-T	g.chr4:850340_850342delCAC	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	850369	850371	+	Intron	DEL	CAC	-	-	rs33966084		2012-695:2012-1303-T	g.chr4:850369_850371delCAC	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
ABLIM2	84448	broad.mit.edu	37	4	8133465	8133466	+	Intron	INS	-	T	T	rs34029673		2012-695:2012-1303-T	g.chr4:8133465_8133466insT	uc003gko.2	-						ABLIM2_uc003gkj.3_Intron|ABLIM2_uc003gkm.3_Intron|ABLIM2_uc003gkp.2_Intron|ABLIM2_uc003gkq.2_Intron|ABLIM2_uc003gkr.2_Intron|ABLIM2_uc003gks.3_Intron	NM_001130084	NP_001123556
MAML3	55534	broad.mit.edu	37	4	140811084	140811084	+	Frame_Shift_Del	DEL	C	-	-	rs12506879	by1000genomes	2012-695:2012-1303-T	g.chr4:140811084delC	uc003ihz.1	-	2	2258	c.1506delG	c.(1504-1506)CAGfs	p.Q502fs	MAML3_uc011chd.1_Intron	NM_018717	NP_061187
MAML3	55534	broad.mit.edu	37	4	140811086	140811096	+	Frame_Shift_Del	DEL	GCTGCTGCTGC	-	-	rs67877726;rs72161425;rs79090010	by1000genomes	2012-695:2012-1303-T	g.chr4:140811086_140811096delGCTGCTGCTGC	uc003ihz.1	-	2	2246_2256	c.1494_1504delGCAGCAGCAGC	c.(1492-1506)CAGCAGCAGCAGCAGfs	p.Q498fs	MAML3_uc011chd.1_Intron	NM_018717	NP_061187
PDCD6	10016	broad.mit.edu	37	5	298754	298755	+	Intron	INS	-	C	C			2012-695:2012-1303-T	g.chr5:298754_298755insC	uc003jat.1	+						PDCD6_uc003jau.1_Intron	NM_013232	NP_037364
CEP72	55722	broad.mit.edu	37	5	648709	648710	+	Intron	DEL	TG	-	-			2012-695:2012-1303-T	g.chr5:648709_648710delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	648816	648817	+	Intron	DEL	AT	-	-	rs148682618	by1000genomes	2012-695:2012-1303-T	g.chr5:648816_648817delAT	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649167	649168	+	Intron	INS	-	G	G			2012-695:2012-1303-T	g.chr5:649167_649168insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649234	649235	+	Intron	INS	-	G	G	rs77571790		2012-695:2012-1303-T	g.chr5:649234_649235insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649701	649710	+	Intron	DEL	ACTGAGGCGT	-	-			2012-695:2012-1303-T	g.chr5:649701_649710delACTGAGGCGT	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650629	650629	+	Intron	DEL	T	-	-			2012-695:2012-1303-T	g.chr5:650629delT	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1070663	1070664	+	Intron	INS	-	G	G	rs11428911		2012-695:2012-1303-T	g.chr5:1070663_1070664insG	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1071333	1071334	+	Intron	INS	-	G	G			2012-695:2012-1303-T	g.chr5:1071333_1071334insG	uc003jbu.2	-							NM_006598	NP_006589
TERT	7015	broad.mit.edu	37	5	1272986	1272987	+	Intron	INS	-	GGACCA	GGACCA	rs4484476		2012-695:2012-1303-T	g.chr5:1272986_1272987insGGACCA	uc003jcb.1	-						TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Intron|TERT_uc003jcc.1_Intron|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983
CDHR2	54825	broad.mit.edu	37	5	176019100	176019101	+	Intron	INS	-	TGA	TGA			2012-695:2012-1303-T	g.chr5:176019100_176019101insTGA	uc003mem.1	+						CDHR2_uc003men.1_Intron	NM_017675	NP_060145
DEK	7913	broad.mit.edu	37	6	18264841	18264841	+	5'Flank	DEL	G	-	-			2012-695:2012-1303-T	g.chr6:18264841delG	uc003ncr.1	-						DEK_uc011djf.1_5'Flank|DEK_uc011djg.1_5'Flank	NM_003472	NP_003463
PBX2	5089	broad.mit.edu	37	6	32156537	32156538	+	Frame_Shift_Ins	INS	-	G	G			2012-695:2012-1303-T	g.chr6:32156537_32156538insG	uc003oav.1	-	2	528_529	c.257_258insC	c.(256-258)GCTfs	p.A86fs	PBX2_uc003oaw.2_Frame_Shift_Ins_p.A86fs	NM_002586	NP_002577
SYTL3	94120	broad.mit.edu	37	6	159122182	159122183	+	Intron	INS	-	T	T	rs73797085	by1000genomes	2012-695:2012-1303-T	g.chr6:159122182_159122183insT	uc003qrp.2	+						SYTL3_uc011efp.1_Intron|SYTL3_uc003qro.2_Intron|SYTL3_uc003qrq.2_Intron|SYTL3_uc003qrr.2_Intron|SYTL3_uc003qrs.2_Intron|SYTL3_uc011efq.1_Intron	NM_001009991	NP_001009991
SYTL3	94120	broad.mit.edu	37	6	159122207	159122208	+	Intron	INS	-	T	T			2012-695:2012-1303-T	g.chr6:159122207_159122208insT	uc003qrp.2	+						SYTL3_uc011efp.1_Intron|SYTL3_uc003qro.2_Intron|SYTL3_uc003qrq.2_Intron|SYTL3_uc003qrr.2_Intron|SYTL3_uc003qrs.2_Intron|SYTL3_uc011efq.1_Intron	NM_001009991	NP_001009991
PSMB1	5689	broad.mit.edu	37	6	170783995	170783995	+	Intron	DEL	C	-	-			2012-695:2012-1303-T	g.chr6:170783995delC	uc003qxq.2	-							NM_002793	
HEATR2	54919	broad.mit.edu	37	7	782240	782241	+	Intron	INS	-	AT	AT			2012-695:2012-1303-T	g.chr7:782240_782241insAT	uc010krz.1	+						HEATR2_uc003siz.2_Intron	NM_017802	NP_060272
HEATR2	54919	broad.mit.edu	37	7	782508	782509	+	Intron	INS	-	AT	AT	rs66519480		2012-695:2012-1303-T	g.chr7:782508_782509insAT	uc010krz.1	+						HEATR2_uc003siz.2_Intron	NM_017802	NP_060272
MAD1L1	8379	broad.mit.edu	37	7	2141829	2141831	+	Intron	DEL	CAC	-	-	rs72154011		2012-695:2012-1303-T	g.chr7:2141829_2141831delCAC	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
PTPRN2	5799	broad.mit.edu	37	7	158224158	158224158	+	Intron	DEL	G	-	-			2012-695:2012-1303-T	g.chr7:158224158delG	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ARHGEF10	9639	broad.mit.edu	37	8	1780747	1780752	+	Intron	DEL	CAGAGA	-	-			2012-695:2012-1303-T	g.chr8:1780747_1780752delCAGAGA	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
TOP1MT	116447	broad.mit.edu	37	8	144404673	144404673	+	Intron	DEL	C	-	-			2012-695:2012-1303-T	g.chr8:144404673delC	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
POMT1	10585	broad.mit.edu	37	9	134391317	134391317	+	Intron	DEL	G	-	-	rs75256542		2012-695:2012-1303-T	g.chr9:134391317delG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391321	134391321	+	Intron	DEL	G	-	-			2012-695:2012-1303-T	g.chr9:134391321delG	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
COL5A1	1289	broad.mit.edu	37	9	137577447	137577447	+	Intron	DEL	A	-	-			2012-695:2012-1303-T	g.chr9:137577447delA	uc004cfe.2	+							NM_000093	NP_000084
SCNN1D	6339	broad.mit.edu	37	1	1224869	1224870	+	Intron	INS	-	CC	CC			2012-696:2012-1305-T	g.chr1:1224869_1224870insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
MORN1	79906	broad.mit.edu	37	1	2277483	2277484	+	Intron	INS	-	G	G			2012-696:2012-1305-T	g.chr1:2277483_2277484insG	uc001ajb.1	-						MORN1_uc009vld.2_Intron	NM_024848	NP_079124
SLC5A9	200010	broad.mit.edu	37	1	48692868	48692869	+	Intron	INS	-	TG	TG	rs145159392;rs142832035	by1000genomes	2012-696:2012-1305-T	g.chr1:48692868_48692869insTG	uc001cro.2	+						SLC5A9_uc010oms.1_Intron|SLC5A9_uc001crn.2_Intron|SLC5A9_uc010omt.1_Intron|SLC5A9_uc001crp.2_Intron|SLC5A9_uc010omu.1_Intron	NM_001011547	NP_001011547
CUBN	8029	broad.mit.edu	37	10	16911924	16911924	+	Intron	DEL	A	-	-	rs80179000		2012-696:2012-1305-T	g.chr10:16911924delA	uc001ioo.2	-						CUBN_uc009xjq.1_Intron|CUBN_uc009xjr.1_Intron	NM_001081	NP_001072
MGMT	4255	broad.mit.edu	37	10	131348713	131348713	+	Intron	DEL	T	-	-	rs58863411		2012-696:2012-1305-T	g.chr10:131348713delT	uc001lkh.2	+							NM_002412	NP_002403
GPR123	84435	broad.mit.edu	37	10	134891628	134891629	+	Intron	INS	-	AT	AT			2012-696:2012-1305-T	g.chr10:134891628_134891629insAT	uc001llw.2	+								
MACROD1	28992	broad.mit.edu	37	11	63777763	63777764	+	Intron	INS	-	GG	GG			2012-696:2012-1305-T	g.chr11:63777763_63777764insGG	uc001nyh.2	-							NM_014067	NP_054786
TPCN2	219931	broad.mit.edu	37	11	68838579	68838580	+	Intron	INS	-	TG	TG	rs66520477		2012-696:2012-1305-T	g.chr11:68838579_68838580insTG	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_5'Flank	NM_139075	NP_620714
TPCN2	219931	broad.mit.edu	37	11	68838582	68838582	+	Intron	DEL	A	-	-			2012-696:2012-1305-T	g.chr11:68838582delA	uc001oos.2	+						TPCN2_uc009ysk.1_Intron|TPCN2_uc001oor.2_Intron|TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_5'Flank	NM_139075	NP_620714
PTPRR	5801	broad.mit.edu	37	12	71124812	71124813	+	Intron	INS	-	GA	GA			2012-696:2012-1305-T	g.chr12:71124812_71124813insGA	uc001swi.1	-						PTPRR_uc001swh.1_Intron|PTPRR_uc009zrs.2_Intron|PTPRR_uc010stq.1_Intron|PTPRR_uc010str.1_Intron	NM_002849	NP_002840
ZDHHC20	253832	broad.mit.edu	37	13	21951790	21951791	+	Intron	DEL	CT	-	-			2012-696:2012-1305-T	g.chr13:21951790_21951791delCT	uc001uob.2	-						ZDHHC20_uc001uod.2_Intron|ZDHHC20_uc001uoc.2_Intron|ZDHHC20_uc001uoe.2_Intron|ZDHHC20_uc010tcs.1_Intron	NM_153251	NP_694983
COL4A2	1284	broad.mit.edu	37	13	111133730	111133730	+	Intron	DEL	T	-	-			2012-696:2012-1305-T	g.chr13:111133730delT	uc001vqx.2	+							NM_001846	NP_001837
GRK1	6011	broad.mit.edu	37	13	114431029	114431031	+	Intron	DEL	AGT	-	-			2012-696:2012-1305-T	g.chr13:114431029_114431031delAGT	uc010tkf.1	+							NM_002929	NP_002920
INF2	64423	broad.mit.edu	37	14	105186987	105186987	+	Intron	DEL	C	-	-			2012-696:2012-1305-T	g.chr14:105186987delC	uc010tyi.1	+							NM_022489	NP_071934
LRRK1	79705	broad.mit.edu	37	15	101481506	101481507	+	Intron	DEL	TA	-	-	rs146711140		2012-696:2012-1305-T	g.chr15:101481506_101481507delTA	uc002bwr.2	+						LRRK1_uc010usb.1_Intron|LRRK1_uc010usc.1_Intron|LRRK1_uc002bwq.1_Intron	NM_024652	NP_078928
DECR2	26063	broad.mit.edu	37	16	458213	458214	+	Intron	DEL	CT	-	-			2012-696:2012-1305-T	g.chr16:458213_458214delCT	uc002chb.2	+						DECR2_uc002chc.2_Intron|DECR2_uc010bqv.2_Intron|DECR2_uc002chd.2_Intron|DECR2_uc002che.1_Intron	NM_020664	NP_065715
JPH3	57338	broad.mit.edu	37	16	87637893	87637894	+	Intron	INS	-	CTGCTG	CTGCTG			2012-696:2012-1305-T	g.chr16:87637893_87637894insCTGCTG	uc002fkd.2	+						JPH3_uc010vou.1_Intron	NM_020655	NP_065706
MYH3	4621	broad.mit.edu	37	17	10538885	10538897	+	Intron	DEL	AGAAGTTAAAAAG	-	-			2012-696:2012-1305-T	g.chr17:10538885_10538897delAGAAGTTAAAAAG	uc002gmq.1	-							NM_002470	NP_002461
RAB37	326624	broad.mit.edu	37	17	72729650	72729650	+	Intron	DEL	G	-	-			2012-696:2012-1305-T	g.chr17:72729650delG	uc010dfu.2	+						RAB37_uc002jlc.2_Intron|RAB37_uc002jld.2_Intron	NM_175738	NP_783865
RPTOR	57521	broad.mit.edu	37	17	78608400	78608410	+	Intron	DEL	GTACTGTGTGT	-	-	rs72304965		2012-696:2012-1305-T	g.chr17:78608400_78608410delGTACTGTGTGT	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
FOXK2	3607	broad.mit.edu	37	17	80533962	80533963	+	Intron	DEL	GT	-	-	rs72045210		2012-696:2012-1305-T	g.chr17:80533962_80533963delGT	uc002kfn.2	+						FOXK2_uc002kfm.1_Intron|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505
TBCD	6904	broad.mit.edu	37	17	80807777	80807778	+	Intron	INS	-	GCTGC	GCTGC	rs146657952	by1000genomes	2012-696:2012-1305-T	g.chr17:80807777_80807778insGCTGC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
DSC1	1823	broad.mit.edu	37	18	28730230	28730231	+	Intron	INS	-	CAC	CAC			2012-696:2012-1305-T	g.chr18:28730230_28730231insCAC	uc002kwn.2	-						DSC1_uc002kwm.2_Intron	NM_024421	NP_077739
GALR1	2587	broad.mit.edu	37	18	74971013	74971021	+	Intron	DEL	ATGGTGGTC	-	-			2012-696:2012-1305-T	g.chr18:74971013_74971021delATGGTGGTC	uc002lms.3	+							NM_001480	NP_001471
PQLC1	80148	broad.mit.edu	37	18	77679665	77679665	+	Intron	DEL	A	-	-			2012-696:2012-1305-T	g.chr18:77679665delA	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
PQLC1	80148	broad.mit.edu	37	18	77680200	77680200	+	Intron	DEL	A	-	-	rs10711980		2012-696:2012-1305-T	g.chr18:77680200delA	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
TSSC1	7260	broad.mit.edu	37	2	3244712	3244713	+	Intron	INS	-	AAAG	AAAG	rs111859534;rs34051567		2012-696:2012-1305-T	g.chr2:3244712_3244713insAAAG	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
SPAG16	79582	broad.mit.edu	37	2	214272553	214272554	+	Intron	DEL	AG	-	-			2012-696:2012-1305-T	g.chr2:214272553_214272554delAG	uc002veq.2	+						SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Intron|SPAG16_uc010zjk.1_Intron	NM_024532	NP_078808
C20orf26	26074	broad.mit.edu	37	20	20337368	20337369	+	Intron	DEL	TG	-	-			2012-696:2012-1305-T	g.chr20:20337368_20337369delTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
OSBPL2	9885	broad.mit.edu	37	20	60845756	60845764	+	Intron	DEL	CCTCTCTGG	-	-			2012-696:2012-1305-T	g.chr20:60845756_60845764delCCTCTCTGG	uc002yck.1	+						OSBPL2_uc002ycl.1_Intron|OSBPL2_uc011aah.1_Intron	NM_144498	NP_653081
PHF21B	112885	broad.mit.edu	37	22	45280643	45280645	+	Intron	DEL	ACC	-	-	rs111426216		2012-696:2012-1305-T	g.chr22:45280643_45280645delACC	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
TUBGCP6	85378	broad.mit.edu	37	22	50673779	50673781	+	Intron	DEL	CAA	-	-			2012-696:2012-1305-T	g.chr22:50673779_50673781delCAA	uc003bkb.1	-						TUBGCP6_uc010har.1_Intron|TUBGCP6_uc010has.1_Intron	NM_020461	NP_065194
GAK	2580	broad.mit.edu	37	4	850185	850185	+	Intron	DEL	A	-	-			2012-696:2012-1305-T	g.chr4:850185delA	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
ABLIM2	84448	broad.mit.edu	37	4	8133487	8133487	+	Intron	DEL	T	-	-			2012-696:2012-1305-T	g.chr4:8133487delT	uc003gko.2	-						ABLIM2_uc003gkj.3_Intron|ABLIM2_uc003gkm.3_Intron|ABLIM2_uc003gkp.2_Intron|ABLIM2_uc003gkq.2_Intron|ABLIM2_uc003gkr.2_Intron|ABLIM2_uc003gks.3_Intron	NM_001130084	NP_001123556
DSPP	1834	broad.mit.edu	37	4	88537073	88537081	+	In_Frame_Del	DEL	AGCAGTGAC	-	-			2012-696:2012-1305-T	g.chr4:88537073_88537081delAGCAGTGAC	uc003hqu.2	+	5	3379_3387	c.3259_3267delAGCAGTGAC	c.(3259-3267)AGCAGTGACdel	p.SSD1087del		NM_014208	NP_055023
DSPP	1834	broad.mit.edu	37	4	88537105	88537107	+	In_Frame_Del	DEL	CGA	-	-	rs146069704	by1000genomes	2012-696:2012-1305-T	g.chr4:88537105_88537107delCGA	uc003hqu.2	+	5	3411_3413	c.3291_3293delCGA	c.(3289-3294)AGCGAT>AGT	p.D1098del		NM_014208	NP_055023
DSPP	1834	broad.mit.edu	37	4	88537109	88537114	+	In_Frame_Del	DEL	AGCAGC	-	-			2012-696:2012-1305-T	g.chr4:88537109_88537114delAGCAGC	uc003hqu.2	+	5	3415_3420	c.3295_3300delAGCAGC	c.(3295-3300)AGCAGCdel	p.SS1099del		NM_014208	NP_055023
SLC6A3	6531	broad.mit.edu	37	5	1422600	1422601	+	Intron	DEL	CA	-	-			2012-696:2012-1305-T	g.chr5:1422600_1422601delCA	uc003jck.2	-							NM_001044	NP_001035
TMEM181	57583	broad.mit.edu	37	6	159047965	159047968	+	Intron	DEL	TTCT	-	-	rs71030182;rs140164490;rs67090557	by1000genomes	2012-696:2012-1305-T	g.chr6:159047965_159047968delTTCT	uc003qrm.3	+						TMEM181_uc010kjr.1_Intron	NM_020823	NP_065874
COL1A2	1278	broad.mit.edu	37	7	94047887	94047888	+	Intron	INS	-	T	T			2012-696:2012-1305-T	g.chr7:94047887_94047888insT	uc003ung.1	+						COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080
TBXAS1	6916	broad.mit.edu	37	7	139565372	139565373	+	Intron	INS	-	GA	GA			2012-696:2012-1305-T	g.chr7:139565372_139565373insGA	uc011kqv.1	+						TBXAS1_uc003vvh.2_Intron|TBXAS1_uc010lne.2_Intron|TBXAS1_uc011kqu.1_Intron|TBXAS1_uc003vvi.2_Intron|TBXAS1_uc003vvj.2_Intron|TBXAS1_uc011kqw.1_Intron|TBXAS1_uc011kqx.1_Intron	NM_001130966	NP_001124438
ARHGEF10	9639	broad.mit.edu	37	8	1781261	1781262	+	Intron	INS	-	AG	AG	rs150664566		2012-696:2012-1305-T	g.chr8:1781261_1781262insAG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron	NM_014629	NP_055444
ARHGEF10	9639	broad.mit.edu	37	8	1868267	1868267	+	Intron	DEL	G	-	-			2012-696:2012-1305-T	g.chr8:1868267delG	uc003wpr.2	+						ARHGEF10_uc003wpq.1_Intron|ARHGEF10_uc003wps.2_Intron|ARHGEF10_uc003wpv.2_Intron|ARHGEF10_uc010lre.2_Intron	NM_014629	NP_055444
PEBP4	157310	broad.mit.edu	37	8	22623306	22623307	+	Intron	INS	-	A	A	rs61315444;rs35035196		2012-696:2012-1305-T	g.chr8:22623306_22623307insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623307	22623308	+	Intron	INS	-	TC	TC	rs35035196;rs56184904		2012-696:2012-1305-T	g.chr8:22623307_22623308insTC	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623337	22623338	+	Intron	INS	-	A	A	rs71834123		2012-696:2012-1305-T	g.chr8:22623337_22623338insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623338	22623339	+	Intron	INS	-	TC	TC	rs71834123		2012-696:2012-1305-T	g.chr8:22623338_22623339insTC	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623368	22623369	+	Intron	INS	-	A	A	rs75456674;rs66898805		2012-696:2012-1305-T	g.chr8:22623368_22623369insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623369	22623370	+	Intron	INS	-	TC	TC	rs66898805;rs62494989		2012-696:2012-1305-T	g.chr8:22623369_22623370insTC	uc003xcn.1	-							NM_144962	NP_659399
POMT1	10585	broad.mit.edu	37	9	134391546	134391546	+	Intron	DEL	C	-	-	rs68077018		2012-696:2012-1305-T	g.chr9:134391546delC	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
POMT1	10585	broad.mit.edu	37	9	134391549	134391551	+	Intron	DEL	ACA	-	-			2012-696:2012-1305-T	g.chr9:134391549_134391551delACA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
SCNN1D	6339	broad.mit.edu	37	1	1223891	1223892	+	Intron	INS	-	CC	CC			2012-699:2012-1304-T	g.chr1:1223891_1223892insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1224014	1224015	+	Intron	DEL	TC	-	-			2012-699:2012-1304-T	g.chr1:1224014_1224015delTC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PTCHD2	57540	broad.mit.edu	37	1	11582621	11582631	+	Intron	DEL	CCCAGCCAGGA	-	-			2012-699:2012-1304-T	g.chr1:11582621_11582631delCCCAGCCAGGA	uc001ash.3	+						PTCHD2_uc001asi.1_Intron	NM_020780	NP_065831
ADARB2	105	broad.mit.edu	37	10	1493847	1493866	+	Intron	DEL	AGGGGACACACCTGTATAAC	-	-	rs149920277;rs67493661;rs78896586;rs61834361		2012-699:2012-1304-T	g.chr10:1493847_1493866delAGGGGACACACCTGTATAAC	uc009xhq.2	-							NM_018702	NP_061172
DOCK1	1793	broad.mit.edu	37	10	129059573	129059576	+	Intron	DEL	GTGC	-	-	rs149303350;rs145924103		2012-699:2012-1304-T	g.chr10:129059573_129059576delGTGC	uc001ljt.2	+						DOCK1_uc010qun.1_Intron	NM_001380	NP_001371
GPR123	84435	broad.mit.edu	37	10	134893024	134893025	+	Intron	INS	-	GTGT	GTGT	rs72450046		2012-699:2012-1304-T	g.chr10:134893024_134893025insGTGT	uc001llw.2	+								
BRSK2	9024	broad.mit.edu	37	11	1430007	1430007	+	Intron	DEL	G	-	-	rs59441591		2012-699:2012-1304-T	g.chr11:1430007delG	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron|BRSK2_uc001ltm.2_5'Flank	NM_003957	NP_003948
BRSK2	9024	broad.mit.edu	37	11	1430009	1430013	+	Intron	DEL	TTGGC	-	-	rs149317444;rs112616926;rs56958929;rs144527251	by1000genomes	2012-699:2012-1304-T	g.chr11:1430009_1430013delTTGGC	uc001lti.2	+						BRSK2_uc009ycv.1_Intron|BRSK2_uc001lth.1_Intron|BRSK2_uc001ltj.2_Intron|BRSK2_uc001ltk.2_Intron|BRSK2_uc001ltl.2_Intron|BRSK2_uc001ltm.2_5'Flank	NM_003957	NP_003948
MYO7A	4647	broad.mit.edu	37	11	76904116	76904116	+	Intron	DEL	T	-	-			2012-699:2012-1304-T	g.chr11:76904116delT	uc001oyb.2	+						MYO7A_uc010rsm.1_Intron|MYO7A_uc001oyc.2_Intron|MYO7A_uc009yus.1_Intron|MYO7A_uc009yut.1_Intron	NM_000260	NP_000251
PHLDB1	23187	broad.mit.edu	37	11	118480206	118480223	+	Intron	DEL	GCAGCCCAGCTCACACAT	-	-	rs67307131	by1000genomes	2012-699:2012-1304-T	g.chr11:118480206_118480223delGCAGCCCAGCTCACACAT	uc001ptr.1	+						PHLDB1_uc010ryh.1_Intron|PHLDB1_uc001pts.2_Intron|PHLDB1_uc001ptt.2_Intron|PHLDB1_uc001ptu.1_Intron	NM_015157	NP_055972
CACNA2D4	93589	broad.mit.edu	37	12	2016938	2016950	+	Intron	DEL	AGCCTGGTGAGTA	-	-	rs143826904;rs113797488;rs56987319;rs61907991	by1000genomes	2012-699:2012-1304-T	g.chr12:2016938_2016950delAGCCTGGTGAGTA	uc001qjp.2	-						CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952
TSPAN9	10867	broad.mit.edu	37	12	3307265	3307265	+	Intron	DEL	C	-	-			2012-699:2012-1304-T	g.chr12:3307265delC	uc001qlp.2	+							NM_006675	NP_006666
KSR2	283455	broad.mit.edu	37	12	118232178	118232187	+	Intron	DEL	ACTCACACCA	-	-	rs139794875;rs145084103;rs141668118	by1000genomes	2012-699:2012-1304-T	g.chr12:118232178_118232187delACTCACACCA	uc001two.2	-							NM_173598	NP_775869
KSR2	283455	broad.mit.edu	37	12	118232192	118232199	+	Intron	DEL	GCACACTC	-	-	rs138374624;rs147430890	by1000genomes	2012-699:2012-1304-T	g.chr12:118232192_118232199delGCACACTC	uc001two.2	-							NM_173598	NP_775869
GPR133	283383	broad.mit.edu	37	12	131530780	131530780	+	Intron	DEL	C	-	-	rs72149353		2012-699:2012-1304-T	g.chr12:131530780delC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
GPR133	283383	broad.mit.edu	37	12	131578555	131578556	+	Intron	INS	-	C	C			2012-699:2012-1304-T	g.chr12:131578555_131578556insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
COL4A2	1284	broad.mit.edu	37	13	111133970	111133970	+	Intron	DEL	T	-	-	rs67492412		2012-699:2012-1304-T	g.chr13:111133970delT	uc001vqx.2	+							NM_001846	NP_001837
F7	2155	broad.mit.edu	37	13	113766045	113766046	+	Intron	INS	-	CACT	CACT	rs10662508;rs72088242		2012-699:2012-1304-T	g.chr13:113766045_113766046insCACT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
TFDP1	7027	broad.mit.edu	37	13	114279379	114279380	+	Intron	DEL	TC	-	-			2012-699:2012-1304-T	g.chr13:114279379_114279380delTC	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
TFDP1	7027	broad.mit.edu	37	13	114279421	114279422	+	Intron	DEL	TC	-	-			2012-699:2012-1304-T	g.chr13:114279421_114279422delTC	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
RASA3	22821	broad.mit.edu	37	13	114873756	114873756	+	Intron	DEL	T	-	-			2012-699:2012-1304-T	g.chr13:114873756delT	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
RASA3	22821	broad.mit.edu	37	13	114873759	114873760	+	Intron	INS	-	TG	TG			2012-699:2012-1304-T	g.chr13:114873759_114873760insTG	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
LMF1	64788	broad.mit.edu	37	16	909167	909169	+	Intron	DEL	GAC	-	-			2012-699:2012-1304-T	g.chr16:909167_909169delGAC	uc002ckj.2	-						LMF1_uc010brg.2_Intron|LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron	NM_022773	NP_073610
BAIAP3	8938	broad.mit.edu	37	16	1390190	1390191	+	Intron	DEL	AC	-	-			2012-699:2012-1304-T	g.chr16:1390190_1390191delAC	uc002clk.1	+						BAIAP3_uc002clj.2_Intron|BAIAP3_uc010uuz.1_Intron|BAIAP3_uc010uva.1_Intron|BAIAP3_uc010uvb.1_Intron|BAIAP3_uc010uvc.1_Intron	NM_003933	NP_003924
BANP	54971	broad.mit.edu	37	16	88048693	88048695	+	Intron	DEL	TGT	-	-	rs116374721;rs150743238	by1000genomes	2012-699:2012-1304-T	g.chr16:88048693_88048695delTGT	uc002fkr.2	+						BANP_uc002fkp.2_Intron|BANP_uc002fkq.2_Intron|BANP_uc010vow.1_Intron|BANP_uc002fks.3_Intron|BANP_uc002fko.1_Intron|BANP_uc010vov.1_Intron	NM_079837	NP_524576
LRRC37B	114659	broad.mit.edu	37	17	30377000	30377001	+	Intron	INS	-	T	T			2012-699:2012-1304-T	g.chr17:30377000_30377001insT	uc002hgu.2	+						LRRC37B_uc010wbx.1_Intron|LRRC37B_uc010csu.2_Intron	NM_052888	NP_443120
SLC39A11	201266	broad.mit.edu	37	17	70779264	70779266	+	Intron	DEL	GAT	-	-	rs36103922		2012-699:2012-1304-T	g.chr17:70779264_70779266delGAT	uc002jjb.2	-						SLC39A11_uc002jja.2_Intron	NM_001159770	NP_001153242
RPTOR	57521	broad.mit.edu	37	17	78814415	78814417	+	Intron	DEL	ACA	-	-			2012-699:2012-1304-T	g.chr17:78814415_78814417delACA	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
AATK	9625	broad.mit.edu	37	17	79114712	79114735	+	Intron	DEL	TGGGGCCGTGGGACCGTGGGACCA	-	-	rs72181181;rs55778539;rs55658169;rs57924480;rs56345139;rs55655742	by1000genomes	2012-699:2012-1304-T	g.chr17:79114712_79114735delTGGGGCCGTGGGACCGTGGGACCA	uc010dia.2	-							NM_001080395	NP_001073864
KCNG2	26251	broad.mit.edu	37	18	77626809	77626815	+	Intron	DEL	TGTCTGT	-	-			2012-699:2012-1304-T	g.chr18:77626809_77626815delTGTCTGT	uc010xfl.1	+							NM_012283	NP_036415
PQLC1	80148	broad.mit.edu	37	18	77680381	77680381	+	Intron	DEL	A	-	-			2012-699:2012-1304-T	g.chr18:77680381delA	uc002lnl.2	-						PQLC1_uc010dre.2_Intron|PQLC1_uc002lnk.2_Intron|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354
INSR	3643	broad.mit.edu	37	19	7153217	7153217	+	Intron	DEL	C	-	-			2012-699:2012-1304-T	g.chr19:7153217delC	uc002mgd.1	-						INSR_uc002mge.1_Intron|INSR_uc002mgf.2_Intron	NM_000208	NP_000199
NOTCH3	4854	broad.mit.edu	37	19	15273600	15273605	+	Intron	DEL	GTGTGC	-	-	rs4019573;rs757473	by1000genomes	2012-699:2012-1304-T	g.chr19:15273600_15273605delGTGTGC	uc002nan.2	-							NM_000435	NP_000426
ZNF547	284306	broad.mit.edu	37	19	58010850	58010851	+	Intron	INS	-	CAT	CAT			2012-699:2012-1304-T	g.chr19:58010850_58010851insCAT	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
TSSC1	7260	broad.mit.edu	37	2	3244722	3244722	+	Intron	DEL	C	-	-	rs66631606		2012-699:2012-1304-T	g.chr2:3244722delC	uc002qxj.2	-						TSSC1_uc002qxi.2_Intron	NM_003310	NP_003301
DYSF	8291	broad.mit.edu	37	2	71798588	71798589	+	Intron	DEL	AG	-	-			2012-699:2012-1304-T	g.chr2:71798588_71798589delAG	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron	NM_003494	NP_003485
DYSF	8291	broad.mit.edu	37	2	71799364	71799385	+	Intron	DEL	CACAGATCACACCTAGCACACC	-	-	rs70959302;rs72078337;rs112184497;rs116794045;rs145802178		2012-699:2012-1304-T	g.chr2:71799364_71799385delCACAGATCACACCTAGCACACC	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron	NM_003494	NP_003485
FBLN7	129804	broad.mit.edu	37	2	112918350	112918353	+	Intron	DEL	GACG	-	-	rs3080948		2012-699:2012-1304-T	g.chr2:112918350_112918353delGACG	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
MAP2	4133	broad.mit.edu	37	2	210444005	210444006	+	5'Flank	DEL	GC	-	-	rs139952237	by1000genomes	2012-699:2012-1304-T	g.chr2:210444005_210444006delGC	uc002vde.1	+						MAP2_uc002vdc.1_Intron|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_5'Flank|MAP2_uc002vdg.1_5'Flank	NM_002374	NP_002365
KIF1A	547	broad.mit.edu	37	2	241752051	241752052	+	Intron	INS	-	A	A			2012-699:2012-1304-T	g.chr2:241752051_241752052insA	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
C20orf26	26074	broad.mit.edu	37	20	20336089	20336090	+	Intron	DEL	TG	-	-			2012-699:2012-1304-T	g.chr20:20336089_20336090delTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20337176	20337194	+	Intron	DEL	TGAGGGGAGGTGGTCACAC	-	-	rs74196032		2012-699:2012-1304-T	g.chr20:20337176_20337194delTGAGGGGAGGTGGTCACAC	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
CDH4	1002	broad.mit.edu	37	20	60330425	60330430	+	Intron	DEL	CACACA	-	-	rs112783033		2012-699:2012-1304-T	g.chr20:60330425_60330430delCACACA	uc002ybn.1	+						CDH4_uc002ybp.1_Intron	NM_001794	NP_001785
COL6A1	1291	broad.mit.edu	37	21	47400786	47400789	+	5'Flank	DEL	TCTG	-	-	rs149845859	by1000genomes	2012-699:2012-1304-T	g.chr21:47400786_47400789delTCTG	uc002zhu.1	+							NM_001848	NP_001839
CACNG2	10369	broad.mit.edu	37	22	37005429	37005429	+	Intron	DEL	C	-	-	rs67954210		2012-699:2012-1304-T	g.chr22:37005429delC	uc003aps.1	-							NM_006078	NP_006069
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45196770	45196770	+	Intron	DEL	C	-	-			2012-699:2012-1304-T	g.chr22:45196770delC	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45197118	45197119	+	Intron	INS	-	A	A			2012-699:2012-1304-T	g.chr22:45197118_45197119insA	uc003bfd.2	+						PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|ARHGAP8_uc003bfi.2_Intron|ARHGAP8_uc010gzv.2_Intron|ARHGAP8_uc003bfj.2_Intron|ARHGAP8_uc003bfk.2_Intron|ARHGAP8_uc003bfl.2_Intron|PRR5-ARHGAP8_uc003bfg.1_Intron	NM_181335	NP_851852
MUC4	4585	broad.mit.edu	37	3	195539326	195539327	+	5'Flank	INS	-	TCAGTG	TCAGTG			2012-699:2012-1304-T	g.chr3:195539326_195539327insTCAGTG	uc011bto.1	-						MUC4_uc003fvo.2_5'Flank|MUC4_uc003fvp.2_5'Flank|MUC4_uc010hzv.2_5'Flank	NM_018406	NP_060876
CRIPAK	285464	broad.mit.edu	37	4	1388613	1388613	+	Frame_Shift_Del	DEL	C	-	-			2012-699:2012-1304-T	g.chr4:1388613delC	uc003gdf.2	+	1	3274	c.314delC	c.(313-315)GCCfs	p.A105fs		NM_175918	NP_787114
ZFYVE28	57732	broad.mit.edu	37	4	2400759	2400760	+	Intron	INS	-	A	A	rs58662992		2012-699:2012-1304-T	g.chr4:2400759_2400760insA	uc003gex.1	-						ZFYVE28_uc011bvl.1_Intron|ZFYVE28_uc003gez.2_Intron	NM_020972	NP_066023
DOK7	285489	broad.mit.edu	37	4	3480254	3480257	+	Intron	DEL	AACC	-	-	rs2699430	by1000genomes	2012-699:2012-1304-T	g.chr4:3480254_3480257delAACC	uc003ghd.2	+						DOK7_uc003ghe.2_Intron	NM_173660	NP_775931
MAML3	55534	broad.mit.edu	37	4	140811084	140811084	+	Frame_Shift_Del	DEL	C	-	-	rs12506879	by1000genomes	2012-699:2012-1304-T	g.chr4:140811084delC	uc003ihz.1	-	2	2258	c.1506delG	c.(1504-1506)CAGfs	p.Q502fs	MAML3_uc011chd.1_Intron	NM_018717	NP_061187
MAML3	55534	broad.mit.edu	37	4	140811086	140811096	+	Frame_Shift_Del	DEL	GCTGCTGCTGC	-	-	rs67877726;rs72161425;rs79090010	by1000genomes	2012-699:2012-1304-T	g.chr4:140811086_140811096delGCTGCTGCTGC	uc003ihz.1	-	2	2246_2256	c.1494_1504delGCAGCAGCAGC	c.(1492-1506)CAGCAGCAGCAGCAGfs	p.Q498fs	MAML3_uc011chd.1_Intron	NM_018717	NP_061187
MTNR1A	4543	broad.mit.edu	37	4	187461984	187461985	+	Intron	INS	-	GAAG	GAAG			2012-699:2012-1304-T	g.chr4:187461984_187461985insGAAG	uc003izd.1	-							NM_005958	NP_005949
CEP72	55722	broad.mit.edu	37	5	649198	649199	+	Intron	DEL	TG	-	-			2012-699:2012-1304-T	g.chr5:649198_649199delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650424	650425	+	Intron	INS	-	G	G			2012-699:2012-1304-T	g.chr5:650424_650425insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650616	650617	+	Intron	INS	-	G	G	rs147165357		2012-699:2012-1304-T	g.chr5:650616_650617insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650825	650826	+	Intron	DEL	TG	-	-			2012-699:2012-1304-T	g.chr5:650825_650826delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651179	651180	+	Intron	DEL	TG	-	-			2012-699:2012-1304-T	g.chr5:651179_651180delTG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1070724	1070724	+	Intron	DEL	C	-	-			2012-699:2012-1304-T	g.chr5:1070724delC	uc003jbu.2	-							NM_006598	NP_006589
SLC12A7	10723	broad.mit.edu	37	5	1072566	1072566	+	Intron	DEL	C	-	-			2012-699:2012-1304-T	g.chr5:1072566delC	uc003jbu.2	-							NM_006598	NP_006589
RIOK2	55781	broad.mit.edu	37	5	96514393	96514393	+	Intron	DEL	T	-	-			2012-699:2012-1304-T	g.chr5:96514393delT	uc003kmz.2	-						RIOK2_uc003kna.3_Intron	NM_018343	NP_060813
UNC5A	90249	broad.mit.edu	37	5	176299182	176299183	+	Intron	INS	-	A	A			2012-699:2012-1304-T	g.chr5:176299182_176299183insA	uc003mey.2	+						UNC5A_uc010jkg.1_Intron	NM_133369	NP_588610
ADAMTS2	9509	broad.mit.edu	37	5	178650364	178650367	+	Intron	DEL	CACT	-	-	rs150578307;rs59376923		2012-699:2012-1304-T	g.chr5:178650364_178650367delCACT	uc003mjw.2	-						ADAMTS2_uc011dgm.1_Intron	NM_014244	NP_055059
RNF130	55819	broad.mit.edu	37	5	179442619	179442619	+	Intron	DEL	G	-	-	rs66616765		2012-699:2012-1304-T	g.chr5:179442619delG	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
TCP10	6953	broad.mit.edu	37	6	167800835	167800836	+	5'Flank	INS	-	GC	GC			2012-699:2012-1304-T	g.chr6:167800835_167800836insGC	uc003qvv.1	-						TCP10_uc003qvu.2_5'Flank|TCP10_uc003qvw.2_5'Flank	NM_004610	NP_004601
SMOC2	64094	broad.mit.edu	37	6	169014649	169014650	+	Intron	DEL	GG	-	-			2012-699:2012-1304-T	g.chr6:169014649_169014650delGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
ADAP1	11033	broad.mit.edu	37	7	946140	946140	+	Intron	DEL	G	-	-			2012-699:2012-1304-T	g.chr7:946140delG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf50	84310	broad.mit.edu	37	7	1055827	1055828	+	Intron	INS	-	G	G			2012-699:2012-1304-T	g.chr7:1055827_1055828insG	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1055986	1055988	+	Intron	DEL	CGC	-	-			2012-699:2012-1304-T	g.chr7:1055986_1055988delCGC	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1056049	1056058	+	Intron	DEL	CAGCGCACGC	-	-	rs144970899	by1000genomes	2012-699:2012-1304-T	g.chr7:1056049_1056058delCAGCGCACGC	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1056501	1056510	+	Intron	DEL	CACAGCAGCG	-	-	rs72187772;rs149080984	by1000genomes	2012-699:2012-1304-T	g.chr7:1056501_1056510delCACAGCAGCG	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
PLXNA4	91584	broad.mit.edu	37	7	132248742	132248744	+	Intron	DEL	CTC	-	-			2012-699:2012-1304-T	g.chr7:132248742_132248744delCTC	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
PLXNA4	91584	broad.mit.edu	37	7	132248793	132248795	+	Intron	DEL	CTC	-	-			2012-699:2012-1304-T	g.chr7:132248793_132248795delCTC	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
PTPRN2	5799	broad.mit.edu	37	7	158112372	158112379	+	Intron	DEL	CAGCCTCT	-	-	rs58024490		2012-699:2012-1304-T	g.chr7:158112372_158112379delCAGCCTCT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
ERICH1	157697	broad.mit.edu	37	8	625238	625238	+	Intron	DEL	G	-	-	rs72315442		2012-699:2012-1304-T	g.chr8:625238delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
CSMD1	64478	broad.mit.edu	37	8	3509655	3509657	+	Intron	DEL	ACC	-	-			2012-699:2012-1304-T	g.chr8:3509655_3509657delACC	uc011kwk.1	-							NM_033225	NP_150094
MSRA	4482	broad.mit.edu	37	8	10263265	10263282	+	Intron	DEL	ATGTGCTCACACACACCT	-	-	rs113053260;rs116950162;rs61516507;rs73197281		2012-699:2012-1304-T	g.chr8:10263265_10263282delATGTGCTCACACACACCT	uc003wsx.2	+						MSRA_uc011kwx.1_Intron|MSRA_uc003wsz.2_Intron|MSRA_uc003wsy.2_Intron	NM_012331	NP_036463
PEBP4	157310	broad.mit.edu	37	8	22623337	22623338	+	Intron	INS	-	A	A	rs71834123		2012-699:2012-1304-T	g.chr8:22623337_22623338insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623338	22623339	+	Intron	INS	-	TC	TC	rs71834123		2012-699:2012-1304-T	g.chr8:22623338_22623339insTC	uc003xcn.1	-							NM_144962	NP_659399
TOP1MT	116447	broad.mit.edu	37	8	144404648	144404649	+	Intron	DEL	AG	-	-			2012-699:2012-1304-T	g.chr8:144404648_144404649delAG	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144404649	144404655	+	Intron	DEL	GGCACGC	-	-			2012-699:2012-1304-T	g.chr8:144404649_144404655delGGCACGC	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144404729	144404730	+	Intron	INS	-	CC	CC			2012-699:2012-1304-T	g.chr8:144404729_144404730insCC	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
HEATR7A	727957	broad.mit.edu	37	8	145288431	145288432	+	Intron	INS	-	C	C	rs11435979;rs66838432		2012-699:2012-1304-T	g.chr8:145288431_145288432insC	uc003zbk.3	+						HEATR7A_uc011lla.1_Intron|HEATR7A_uc010mft.2_Intron	NM_032450	NP_115826
POMT1	10585	broad.mit.edu	37	9	134391451	134391451	+	Intron	DEL	A	-	-			2012-699:2012-1304-T	g.chr9:134391451delA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
COL5A1	1289	broad.mit.edu	37	9	137577276	137577276	+	Intron	DEL	C	-	-			2012-699:2012-1304-T	g.chr9:137577276delC	uc004cfe.2	+							NM_000093	NP_000084
OLFM1	10439	broad.mit.edu	37	9	137983509	137983510	+	Intron	INS	-	GT	GT	rs139462521;rs72348057		2012-699:2012-1304-T	g.chr9:137983509_137983510insGT	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
OLFM1	10439	broad.mit.edu	37	9	137983512	137983513	+	Intron	DEL	GT	-	-	rs114526529		2012-699:2012-1304-T	g.chr9:137983512_137983513delGT	uc010nar.2	+						OLFM1_uc004cfl.3_Intron|OLFM1_uc004cfk.3_Intron|OLFM1_uc004cfm.3_Intron	NM_014279	NP_055094
NOTCH1	4851	broad.mit.edu	37	9	139399181	139399181	+	Frame_Shift_Del	DEL	A	-	-			2012-699:2012-1304-T	g.chr9:139399181delA	uc004chz.2	-	26	4962	c.4962delT	c.(4960-4962)CCTfs	p.P1654fs	NOTCH1_uc004cia.1_Frame_Shift_Del_p.P884fs	NM_017617	NP_060087
ZMYND19	116225	broad.mit.edu	37	9	140480805	140480808	+	Intron	DEL	GAAG	-	-			2012-699:2012-1304-T	g.chr9:140480805_140480808delGAAG	uc004cno.1	-							NM_138462	NP_612471
AGRN	375790	broad.mit.edu	37	1	965010	965015	+	Intron	DEL	TGTGTG	-	-	rs35510832		2012-701:2012-1307-T	g.chr1:965010_965015delTGTGTG	uc001ack.1	+							NM_198576	NP_940978
SCNN1D	6339	broad.mit.edu	37	1	1223680	1223681	+	Intron	INS	-	CC	CC			2012-701:2012-1307-T	g.chr1:1223680_1223681insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRDM16	63976	broad.mit.edu	37	1	3097497	3097498	+	Intron	INS	-	TT	TT	rs76684232;rs77036820		2012-701:2012-1307-T	g.chr1:3097497_3097498insTT	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
EPHA8	2046	broad.mit.edu	37	1	22904391	22904392	+	Intron	DEL	TG	-	-			2012-701:2012-1307-T	g.chr1:22904391_22904392delTG	uc001bfx.1	+						EPHA8_uc001bfw.2_Intron	NM_020526	NP_065387
CUBN	8029	broad.mit.edu	37	10	16911556	16911557	+	Intron	INS	-	C	C			2012-701:2012-1307-T	g.chr10:16911556_16911557insC	uc001ioo.2	-						CUBN_uc009xjq.1_Intron	NM_001081	NP_001072
ADAM12	8038	broad.mit.edu	37	10	127789606	127789606	+	Intron	DEL	T	-	-	rs79010435		2012-701:2012-1307-T	g.chr10:127789606delT	uc001ljk.2	-						ADAM12_uc010qul.1_Intron|ADAM12_uc001ljm.2_Intron|ADAM12_uc001ljn.2_Intron|ADAM12_uc001ljl.3_Intron	NM_003474	NP_003465
GPR123	84435	broad.mit.edu	37	10	134892492	134892494	+	Intron	DEL	TTG	-	-			2012-701:2012-1307-T	g.chr10:134892492_134892494delTTG	uc001llw.2	+								
GPR123	84435	broad.mit.edu	37	10	134892523	134892526	+	Intron	DEL	GTGT	-	-			2012-701:2012-1307-T	g.chr10:134892523_134892526delGTGT	uc001llw.2	+								
WT1	7490	broad.mit.edu	37	11	32452809	32452809	+	Intron	DEL	C	-	-			2012-701:2012-1307-T	g.chr11:32452809delC	uc001mtn.1	-						WT1_uc001mtl.1_5'Flank|WT1_uc001mtm.1_5'Flank|WT1_uc001mto.1_Intron|WT1_uc001mtp.1_Intron|WT1_uc001mtq.1_Intron|WT1_uc009yjs.1_Intron	NM_024426	NP_077744
SPI1	6688	broad.mit.edu	37	11	47380277	47380278	+	Intron	DEL	CA	-	-	rs72160162		2012-701:2012-1307-T	g.chr11:47380277_47380278delCA	uc001nfc.1	-						SPI1_uc001nfb.1_Intron|SLC39A13_uc001nfd.2_Intron|SPI1_uc009ylp.1_Frame_Shift_Del_p.C198fs	NM_003120	NP_003111
B4GALNT3	283358	broad.mit.edu	37	12	620677	620679	+	Intron	DEL	CTT	-	-			2012-701:2012-1307-T	g.chr12:620677_620679delCTT	uc001qii.1	+							NM_173593	NP_775864
MLL2	8085	broad.mit.edu	37	12	49444809	49444809	+	Frame_Shift_Del	DEL	G	-	-			2012-701:2012-1307-T	g.chr12:49444809delG	uc001rta.3	-	10	2657	c.2657delC	c.(2656-2658)CCTfs	p.P886fs		NM_003482	NP_003473
GALNT9	50614	broad.mit.edu	37	12	132868127	132868127	+	Intron	DEL	C	-	-	rs146222139	by1000genomes	2012-701:2012-1307-T	g.chr12:132868127delC	uc001ukc.3	-						GALNT9_uc009zys.2_Intron	NM_001122636	NP_001116108
FARP1	10160	broad.mit.edu	37	13	99003377	99003377	+	Intron	DEL	T	-	-			2012-701:2012-1307-T	g.chr13:99003377delT	uc001vnj.2	+						FARP1_uc001vnh.2_Intron	NM_005766	NP_005757
FARP1	10160	broad.mit.edu	37	13	99003381	99003382	+	Intron	INS	-	CC	CC			2012-701:2012-1307-T	g.chr13:99003381_99003382insCC	uc001vnj.2	+						FARP1_uc001vnh.2_Intron	NM_005766	NP_005757
ACTN1	87	broad.mit.edu	37	14	69366094	69366095	+	Intron	INS	-	CC	CC	rs147758633		2012-701:2012-1307-T	g.chr14:69366094_69366095insCC	uc001xkl.2	-						ACTN1_uc010ttb.1_Intron|ACTN1_uc001xkm.2_Intron|ACTN1_uc001xkn.2_Intron|ACTN1_uc001xko.1_Intron|ACTN1_uc010ttd.1_Intron	NM_001102	NP_001093
PSEN1	5663	broad.mit.edu	37	14	73685388	73685388	+	Intron	DEL	T	-	-			2012-701:2012-1307-T	g.chr14:73685388delT	uc001xnr.2	+						PSEN1_uc001xnv.2_Intron|PSEN1_uc010ark.2_Intron|PSEN1_uc001xnu.2_Intron	NM_000021	NP_000012
INF2	64423	broad.mit.edu	37	14	105326173	105326173	+	Intron	DEL	C	-	-			2012-701:2012-1307-T	g.chr14:105326173delC	uc010tyi.1	+							NM_022489	NP_071934
MYO9A	4649	broad.mit.edu	37	15	72395696	72395698	+	Intron	DEL	AGA	-	-			2012-701:2012-1307-T	g.chr15:72395696_72395698delAGA	uc002atl.3	-						MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Intron	NM_006901	NP_008832
MC1R	4157	broad.mit.edu	37	16	89981345	89981346	+	5'Flank	INS	-	TG	TG	rs145110534	by1000genomes	2012-701:2012-1307-T	g.chr16:89981345_89981346insTG	uc002fpe.3	+						uc010ciy.1_RNA	NM_002386	NP_002377
RPH3AL	9501	broad.mit.edu	37	17	165135	165136	+	Intron	DEL	CT	-	-	rs72486900		2012-701:2012-1307-T	g.chr17:165135_165136delCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
VPS53	55275	broad.mit.edu	37	17	424097	424098	+	Intron	INS	-	G	G	rs34035787		2012-701:2012-1307-T	g.chr17:424097_424098insG	uc010cjo.1	-						VPS53_uc002frk.2_Intron	NM_001128159	NP_001121631
TP53	7157	broad.mit.edu	37	17	7576896	7576897	+	Frame_Shift_Ins	INS	-	G	G			2012-701:2012-1307-T	g.chr17:7576896_7576897insG	uc002gim.2	-	9	1143_1144	c.949_950insC	c.(949-951)CAGfs	p.Q317fs	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Frame_Shift_Ins_p.Q317fs|TP53_uc010cne.1_RNA|TP53_uc010cnf.1_Frame_Shift_Ins_p.Q185fs|TP53_uc010cng.1_Frame_Shift_Ins_p.Q185fs|TP53_uc002gii.1_Frame_Shift_Ins_p.Q185fs|TP53_uc010cnh.1_Frame_Shift_Ins_p.Q317fs|TP53_uc010cni.1_Frame_Shift_Ins_p.Q317fs|TP53_uc002gij.2_Frame_Shift_Ins_p.Q317fs	NM_001126112	NP_001119584
TP53	7157	broad.mit.edu	37	17	7579311	7579311	+	Splice_Site	DEL	C	-	-			2012-701:2012-1307-T	g.chr17:7579311delC	uc002gim.2	-	4	569	c.375_splice	c.e4+1	p.T125_splice	TP53_uc002gig.1_Splice_Site_p.T125_splice|TP53_uc002gih.2_Splice_Site_p.T125_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Splice_Site_p.T125_splice|TP53_uc010cni.1_Splice_Site_p.T125_splice|TP53_uc002gij.2_Splice_Site_p.T125_splice|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Splice_Site_p.T86_splice	NM_001126112	NP_001119584
MC2R	4158	broad.mit.edu	37	18	13887386	13887387	+	Intron	DEL	AA	-	-			2012-701:2012-1307-T	g.chr18:13887386_13887387delAA	uc002ksp.1	-							NM_000529	NP_000520
C18orf45	85019	broad.mit.edu	37	18	20855557	20855558	+	Intron	INS	-	GTGCT	GTGCT	rs149794049		2012-701:2012-1307-T	g.chr18:20855557_20855558insGTGCT	uc010xaq.1	-								
ZNF407	55628	broad.mit.edu	37	18	72384382	72384383	+	Intron	INS	-	TGTT	TGTT	rs71767044		2012-701:2012-1307-T	g.chr18:72384382_72384383insTGTT	uc002llw.2	+						ZNF407_uc010xfc.1_Intron|ZNF407_uc010dqu.1_Intron	NM_017757	NP_060227
C3	718	broad.mit.edu	37	19	6717583	6717591	+	Intron	DEL	TTGTGTGTG	-	-	rs72223178		2012-701:2012-1307-T	g.chr19:6717583_6717591delTTGTGTGTG	uc002mfm.2	-							NM_000064	NP_000055
LYPD5	284348	broad.mit.edu	37	19	44302254	44302254	+	Intron	DEL	C	-	-	rs112453679		2012-701:2012-1307-T	g.chr19:44302254delC	uc002oxm.3	-						LYPD5_uc002oxn.3_Intron	NM_001031749	NP_001026919
CACNG7	59284	broad.mit.edu	37	19	54425592	54425592	+	Intron	DEL	C	-	-			2012-701:2012-1307-T	g.chr19:54425592delC	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
SH3YL1	26751	broad.mit.edu	37	2	236029	236030	+	Intron	INS	-	GCA	GCA			2012-701:2012-1307-T	g.chr2:236029_236030insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
SH3YL1	26751	broad.mit.edu	37	2	236074	236089	+	Intron	DEL	GCATGGGCCAGGGGAG	-	-	rs111712181;rs68110616		2012-701:2012-1307-T	g.chr2:236074_236089delGCATGGGCCAGGGGAG	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
SH3YL1	26751	broad.mit.edu	37	2	236259	236260	+	Intron	INS	-	GCA	GCA			2012-701:2012-1307-T	g.chr2:236259_236260insGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
PXDN	7837	broad.mit.edu	37	2	1707383	1707383	+	Intron	DEL	A	-	-	rs78526478		2012-701:2012-1307-T	g.chr2:1707383delA	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
AGXT	189	broad.mit.edu	37	2	241811900	241811902	+	Intron	DEL	GGC	-	-			2012-701:2012-1307-T	g.chr2:241811900_241811902delGGC	uc002waa.3	+						AGXT_uc010zoi.1_Intron	NM_000030	NP_000021
TRPM2	7226	broad.mit.edu	37	21	45848265	45848266	+	Intron	INS	-	C	C			2012-701:2012-1307-T	g.chr21:45848265_45848266insC	uc002zet.1	+						TRPM2_uc002zeu.1_Intron|TRPM2_uc002zew.1_Intron|TRPM2_uc010gpt.1_Intron|TRPM2_uc002zex.1_Intron|TRPM2_uc002zey.1_Intron|uc011afe.1_5'Flank|TRPM2_uc011aff.1_Intron	NM_003307	NP_003298
PHF21B	112885	broad.mit.edu	37	22	45280449	45280450	+	Intron	INS	-	CAC	CAC	rs139139250;rs147289174	by1000genomes	2012-701:2012-1307-T	g.chr22:45280449_45280450insCAC	uc003bfn.2	-						PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron	NM_138415	NP_612424
IFT122	55764	broad.mit.edu	37	3	129235833	129235834	+	Intron	DEL	CA	-	-			2012-701:2012-1307-T	g.chr3:129235833_129235834delCA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
GAK	2580	broad.mit.edu	37	4	850214	850215	+	Intron	INS	-	C	C	rs33969402		2012-701:2012-1307-T	g.chr4:850214_850215insC	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
RGS12	6002	broad.mit.edu	37	4	3364580	3364583	+	Intron	DEL	GTGT	-	-	rs77054072	by1000genomes	2012-701:2012-1307-T	g.chr4:3364580_3364583delGTGT	uc003ggw.2	+						RGS12_uc003ggu.2_Intron|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_Intron|RGS12_uc003ggv.2_Intron|RGS12_uc003ggy.1_Intron	NM_198229	NP_937872
SLC12A7	10723	broad.mit.edu	37	5	1072242	1072242	+	Intron	DEL	C	-	-			2012-701:2012-1307-T	g.chr5:1072242delC	uc003jbu.2	-							NM_006598	NP_006589
FAT2	2196	broad.mit.edu	37	5	150945935	150945935	+	Frame_Shift_Del	DEL	C	-	-			2012-701:2012-1307-T	g.chr5:150945935delC	uc003lue.3	-	1	2571	c.2558delG	c.(2557-2559)GGCfs	p.G853fs	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Frame_Shift_Del_p.G853fs	NM_001447	NP_001438
NSD1	64324	broad.mit.edu	37	5	176671252	176671252	+	Frame_Shift_Del	DEL	T	-	-			2012-701:2012-1307-T	g.chr5:176671252delT	uc003mfr.3	+	9	4497	c.4359delT	c.(4357-4359)TATfs	p.Y1453fs	NSD1_uc003mft.3_Frame_Shift_Del_p.Y1184fs|NSD1_uc003mfs.1_Frame_Shift_Del_p.Y1350fs|NSD1_uc011dfx.1_Frame_Shift_Del_p.Y1101fs	NM_022455	NP_071900
EXOC2	55770	broad.mit.edu	37	6	519816	519816	+	Intron	DEL	G	-	-			2012-701:2012-1307-T	g.chr6:519816delG	uc003mtd.2	-						EXOC2_uc003mte.2_Intron|EXOC2_uc011dho.1_Intron	NM_018303	NP_060773
TMEM181	57583	broad.mit.edu	37	6	159047961	159047966	+	Intron	DEL	CTCATT	-	-	rs71030182;rs140164490	by1000genomes	2012-701:2012-1307-T	g.chr6:159047961_159047966delCTCATT	uc003qrm.3	+						TMEM181_uc010kjr.1_Intron	NM_020823	NP_065874
SUN1	23353	broad.mit.edu	37	7	873703	873703	+	Intron	DEL	G	-	-	rs66513784		2012-701:2012-1307-T	g.chr7:873703delG	uc011jvp.1	+						SUN1_uc010ksa.1_Intron|SUN1_uc003sje.1_Intron|SUN1_uc003sjf.2_Intron|SUN1_uc011jvq.1_Intron	NM_001130965	NP_001124437
SUN1	23353	broad.mit.edu	37	7	873707	873707	+	Intron	DEL	T	-	-	rs58126002		2012-701:2012-1307-T	g.chr7:873707delT	uc011jvp.1	+						SUN1_uc010ksa.1_Intron|SUN1_uc003sje.1_Intron|SUN1_uc003sjf.2_Intron|SUN1_uc011jvq.1_Intron	NM_001130965	NP_001124437
ADAP1	11033	broad.mit.edu	37	7	946163	946164	+	Intron	INS	-	A	A	rs61000036		2012-701:2012-1307-T	g.chr7:946163_946164insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946233	946234	+	Intron	INS	-	A	A			2012-701:2012-1307-T	g.chr7:946233_946234insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
ADAP1	11033	broad.mit.edu	37	7	946244	946244	+	Intron	DEL	G	-	-			2012-701:2012-1307-T	g.chr7:946244delG	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
RAC1	5879	broad.mit.edu	37	7	6415789	6415790	+	Intron	INS	-	T	T	rs146855056;rs34420518	by1000genomes	2012-701:2012-1307-T	g.chr7:6415789_6415790insT	uc003spx.2	+						RAC1_uc003spw.2_Intron	NM_006908	NP_008839
AUTS2	26053	broad.mit.edu	37	7	69961766	69961769	+	Intron	DEL	CAGA	-	-			2012-701:2012-1307-T	g.chr7:69961766_69961769delCAGA	uc003tvw.3	+						AUTS2_uc003tvx.3_Intron	NM_015570	NP_056385
PTPRN2	5799	broad.mit.edu	37	7	157568938	157568939	+	Intron	INS	-	C	C	rs149422515	by1000genomes	2012-701:2012-1307-T	g.chr7:157568938_157568939insC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PTPRN2	5799	broad.mit.edu	37	7	157917927	157917927	+	Intron	DEL	T	-	-	rs76194301		2012-701:2012-1307-T	g.chr7:157917927delT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
MMP16	4325	broad.mit.edu	37	8	89086984	89086985	+	Intron	INS	-	A	A			2012-701:2012-1307-T	g.chr8:89086984_89086985insA	uc003yeb.3	-						MMP16_uc003yec.2_Intron	NM_005941	NP_005932
SCNN1D	6339	broad.mit.edu	37	1	1224604	1224605	+	Intron	DEL	CC	-	-			2012-702:2012-1308-T	g.chr1:1224604_1224605delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRDM16	63976	broad.mit.edu	37	1	3030870	3030871	+	Intron	DEL	CA	-	-			2012-702:2012-1308-T	g.chr1:3030870_3030871delCA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
PRDM16	63976	broad.mit.edu	37	1	3097510	3097511	+	Intron	DEL	TT	-	-	rs75792514		2012-702:2012-1308-T	g.chr1:3097510_3097511delTT	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
CHD5	26038	broad.mit.edu	37	1	6220295	6220296	+	Intron	INS	-	AA	AA			2012-702:2012-1308-T	g.chr1:6220295_6220296insAA	uc001amb.1	-							NM_015557	NP_056372
CHD5	26038	broad.mit.edu	37	1	6220296	6220297	+	Intron	INS	-	A	A			2012-702:2012-1308-T	g.chr1:6220296_6220297insA	uc001amb.1	-							NM_015557	NP_056372
CHD5	26038	broad.mit.edu	37	1	6220398	6220399	+	Intron	INS	-	A	A			2012-702:2012-1308-T	g.chr1:6220398_6220399insA	uc001amb.1	-							NM_015557	NP_056372
CHD5	26038	broad.mit.edu	37	1	6220399	6220400	+	Intron	INS	-	AA	AA			2012-702:2012-1308-T	g.chr1:6220399_6220400insAA	uc001amb.1	-							NM_015557	NP_056372
NBPF1	55672	broad.mit.edu	37	1	16892272	16892273	+	Frame_Shift_Ins	INS	-	T	T			2012-702:2012-1308-T	g.chr1:16892272_16892273insT	uc009vos.1	-	28	4032_4033	c.3144_3145insA	c.(3142-3147)GTAGAGfs	p.V1048fs	uc001ayw.2_5'Flank	NM_017940	NP_060410
NBPF1	55672	broad.mit.edu	37	1	16892277	16892277	+	Frame_Shift_Del	DEL	G	-	-			2012-702:2012-1308-T	g.chr1:16892277delG	uc009vos.1	-	28	4028	c.3140delC	c.(3139-3141)GCAfs	p.A1047fs	uc001ayw.2_5'Flank	NM_017940	NP_060410
CD247	919	broad.mit.edu	37	1	167404322	167404333	+	Intron	DEL	CCTCCAGCCCTA	-	-	rs111245491		2012-702:2012-1308-T	g.chr1:167404322_167404333delCCTCCAGCCCTA	uc001gei.3	-						CD247_uc001gej.3_Intron|CD247_uc001gek.2_In_Frame_Del_p.213_217GRAGG>G	NM_198053	NP_932170
FMN2	56776	broad.mit.edu	37	1	240348248	240348249	+	Intron	INS	-	C	C	rs150876511	by1000genomes	2012-702:2012-1308-T	g.chr1:240348248_240348249insC	uc010pyd.1	+						FMN2_uc010pye.1_Intron	NM_020066	NP_064450
WDR37	22884	broad.mit.edu	37	10	1174744	1174757	+	Intron	DEL	TGCTCGGCGGTCCA	-	-			2012-702:2012-1308-T	g.chr10:1174744_1174757delTGCTCGGCGGTCCA	uc001igf.1	+						WDR37_uc009xhm.1_Intron|WDR37_uc009xhn.1_Intron|WDR37_uc001igg.1_Intron	NM_014023	NP_054742
CCDC6	8030	broad.mit.edu	37	10	61642217	61642221	+	Intron	DEL	AAGGA	-	-			2012-702:2012-1308-T	g.chr10:61642217_61642221delAAGGA	uc001jks.3	-							NM_005436	NP_005427
ANK3	288	broad.mit.edu	37	10	62408622	62408627	+	Intron	DEL	CTGCTC	-	-	rs113110006;rs76463677		2012-702:2012-1308-T	g.chr10:62408622_62408627delCTGCTC	uc001jkz.3	-							NM_001149	NP_001140
MUC5B	727897	broad.mit.edu	37	11	1160137	1160137	+	Intron	DEL	T	-	-			2012-702:2012-1308-T	g.chr11:1160137delT	uc009ycr.1	+							NM_017511	NP_059981
CTSD	1509	broad.mit.edu	37	11	1775771	1775772	+	Intron	INS	-	G	G			2012-702:2012-1308-T	g.chr11:1775771_1775772insG	uc001luc.1	-						CTSD_uc009yda.1_Intron	NM_001909	NP_001900
MACROD1	28992	broad.mit.edu	37	11	63777763	63777764	+	Intron	INS	-	GG	GG			2012-702:2012-1308-T	g.chr11:63777763_63777764insGG	uc001nyh.2	-							NM_014067	NP_054786
ST8SIA1	6489	broad.mit.edu	37	12	22473890	22473891	+	Intron	DEL	AG	-	-	rs67961020;rs112501570		2012-702:2012-1308-T	g.chr12:22473890_22473891delAG	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
GPR133	283383	broad.mit.edu	37	12	131578489	131578491	+	Intron	DEL	CAG	-	-	rs72163366		2012-702:2012-1308-T	g.chr12:131578489_131578491delCAG	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
F7	2155	broad.mit.edu	37	13	113766045	113766046	+	Intron	INS	-	CACT	CACT	rs10662508;rs72088242		2012-702:2012-1308-T	g.chr13:113766045_113766046insCACT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
TFDP1	7027	broad.mit.edu	37	13	114279684	114279685	+	Intron	DEL	GC	-	-			2012-702:2012-1308-T	g.chr13:114279684_114279685delGC	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
GAS6	2621	broad.mit.edu	37	13	114544717	114544718	+	Intron	INS	-	C	C			2012-702:2012-1308-T	g.chr13:114544717_114544718insC	uc001vud.2	-						uc010tki.1_5'Flank	NM_000820	NP_000811
RASA3	22821	broad.mit.edu	37	13	114794977	114794977	+	Intron	DEL	G	-	-			2012-702:2012-1308-T	g.chr13:114794977delG	uc001vui.2	-						RASA3_uc010tkk.1_Intron|RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron|RASA3_uc010aha.1_Intron	NM_007368	NP_031394
RASA3	22821	broad.mit.edu	37	13	114873759	114873760	+	Intron	INS	-	TG	TG			2012-702:2012-1308-T	g.chr13:114873759_114873760insTG	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
RASA3	22821	broad.mit.edu	37	13	114876584	114876585	+	Intron	INS	-	C	C			2012-702:2012-1308-T	g.chr13:114876584_114876585insC	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
DECR2	26063	broad.mit.edu	37	16	458213	458214	+	Intron	DEL	CT	-	-			2012-702:2012-1308-T	g.chr16:458213_458214delCT	uc002chb.2	+						DECR2_uc002chc.2_Intron|DECR2_uc010bqv.2_Intron|DECR2_uc002chd.2_Intron|DECR2_uc002che.1_Intron	NM_020664	NP_065715
LMF1	64788	broad.mit.edu	37	16	1001116	1001118	+	Intron	DEL	AAT	-	-	rs144218528	by1000genomes	2012-702:2012-1308-T	g.chr16:1001116_1001118delAAT	uc002ckj.2	-						LMF1_uc010brh.2_Intron|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_Intron|LMF1_uc010uuu.1_Intron|LMF1_uc010uuv.1_Intron	NM_022773	NP_073610
MAPK8IP3	23162	broad.mit.edu	37	16	1790072	1790073	+	Intron	INS	-	GT	GT	rs147521986		2012-702:2012-1308-T	g.chr16:1790072_1790073insGT	uc002cmk.2	+						MAPK8IP3_uc002cmi.1_Intron|MAPK8IP3_uc002cmj.1_Intron|MAPK8IP3_uc002cml.2_Intron|MAPK8IP3_uc010uvl.1_Intron	NM_015133	NP_055948
SCNN1B	6338	broad.mit.edu	37	16	23327343	23327344	+	Intron	DEL	AT	-	-			2012-702:2012-1308-T	g.chr16:23327343_23327344delAT	uc002dln.2	+							NM_000336	NP_000327
CMIP	80790	broad.mit.edu	37	16	81660797	81660798	+	Intron	DEL	GT	-	-	rs150599312	by1000genomes	2012-702:2012-1308-T	g.chr16:81660797_81660798delGT	uc002fgp.2	+						CMIP_uc002fgq.1_Intron|CMIP_uc010vnq.1_Intron	NM_198390	NP_938204
JPH3	57338	broad.mit.edu	37	16	87637893	87637894	+	Intron	INS	-	CTGCTG	CTGCTG			2012-702:2012-1308-T	g.chr16:87637893_87637894insCTGCTG	uc002fkd.2	+						JPH3_uc010vou.1_Intron	NM_020655	NP_065706
RPH3AL	9501	broad.mit.edu	37	17	138602	138603	+	Intron	INS	-	CT	CT			2012-702:2012-1308-T	g.chr17:138602_138603insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
ABR	29	broad.mit.edu	37	17	1049922	1049922	+	Intron	DEL	C	-	-			2012-702:2012-1308-T	g.chr17:1049922delC	uc002fsd.2	-						ABR_uc002fse.2_Intron	NM_021962	NP_068781
RPTOR	57521	broad.mit.edu	37	17	78814411	78814413	+	Intron	DEL	CAC	-	-	rs35184984		2012-702:2012-1308-T	g.chr17:78814411_78814413delCAC	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78904126	78904131	+	Intron	DEL	CTCATC	-	-	rs71886122		2012-702:2012-1308-T	g.chr17:78904126_78904131delCTCATC	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
FSCN2	25794	broad.mit.edu	37	17	79502869	79502874	+	Intron	DEL	CCATCT	-	-	rs150877731	by1000genomes	2012-702:2012-1308-T	g.chr17:79502869_79502874delCCATCT	uc010wup.1	+						FSCN2_uc010wuo.1_Intron	NM_012418	NP_036550
TBCD	6904	broad.mit.edu	37	17	80807914	80807923	+	Intron	DEL	GTTGGCTGTG	-	-			2012-702:2012-1308-T	g.chr17:80807914_80807923delGTTGGCTGTG	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TBCD	6904	broad.mit.edu	37	17	80807929	80807938	+	Intron	DEL	GTTGGCTGTG	-	-			2012-702:2012-1308-T	g.chr17:80807929_80807938delGTTGGCTGTG	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TCF3	6929	broad.mit.edu	37	19	1642192	1642197	+	Intron	DEL	CAGACG	-	-	rs11276687;rs10526220		2012-702:2012-1308-T	g.chr19:1642192_1642197delCAGACG	uc002ltr.2	-						TCF3_uc002ltt.3_Intron|TCF3_uc002ltq.2_Intron	NM_003200	NP_003191
TJP3	27134	broad.mit.edu	37	19	3738078	3738079	+	Intron	INS	-	TGGCTGTGTCCAT	TGGCTGTGTCCAT	rs142823722;rs147618620	by1000genomes	2012-702:2012-1308-T	g.chr19:3738078_3738079insTGGCTGTGTCCAT	uc010xhv.1	+						TJP3_uc010xhs.1_Intron|TJP3_uc010xht.1_Intron|TJP3_uc010xhu.1_Intron|TJP3_uc010xhw.1_Intron	NM_014428	NP_055243
NOTCH3	4854	broad.mit.edu	37	19	15273598	15273605	+	Intron	DEL	GTGTGTGC	-	-	rs4019573;rs757473	by1000genomes	2012-702:2012-1308-T	g.chr19:15273598_15273605delGTGTGTGC	uc002nan.2	-							NM_000435	NP_000426
DMKN	93099	broad.mit.edu	37	19	36002368	36002370	+	In_Frame_Del	DEL	CCA	-	-	rs142091185	byFrequency	2012-702:2012-1308-T	g.chr19:36002368_36002370delCCA	uc002nzm.3	-	5	1044_1046	c.861_863delTGG	c.(859-864)GGTGGC>GGC	p.287_288GG>G	DMKN_uc002nzj.2_5'Flank|DMKN_uc002nzk.3_5'Flank|DMKN_uc002nzl.3_5'Flank|DMKN_uc002nzo.3_Intron|DMKN_uc002nzn.3_Intron|DMKN_uc002nzw.2_5'Flank|DMKN_uc002nzr.2_5'Flank|DMKN_uc002nzp.2_5'Flank|DMKN_uc002nzq.2_5'Flank|DMKN_uc002nzt.2_5'Flank|DMKN_uc002nzs.2_5'Flank|DMKN_uc002nzu.2_5'Flank|DMKN_uc002nzv.2_5'Flank|DMKN_uc010xsv.1_5'Flank|DMKN_uc010xsw.1_5'Flank|DMKN_uc002nzx.3_5'Flank|DMKN_uc002nzy.3_5'Flank|DMKN_uc002nzz.2_RNA|DMKN_uc002oac.3_In_Frame_Del_p.287_288GG>G|DMKN_uc010eeb.2_In_Frame_Del_p.287_288GG>G|DMKN_uc002oaa.3_In_Frame_Del_p.287_288GG>G|DMKN_uc002oab.3_In_Frame_Del_p.287_288GG>G	NM_033317	NP_201574
CACNG7	59284	broad.mit.edu	37	19	54428870	54428870	+	Intron	DEL	T	-	-			2012-702:2012-1308-T	g.chr19:54428870delT	uc002qcr.1	+						CACNG7_uc010era.1_Intron	NM_031896	NP_114102
ZNF547	284306	broad.mit.edu	37	19	58010926	58010928	+	Intron	DEL	CAT	-	-			2012-702:2012-1308-T	g.chr19:58010926_58010928delCAT	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
DYSF	8291	broad.mit.edu	37	2	71799364	71799385	+	Intron	DEL	CACAGATCACACCTAGCACACC	-	-	rs70959302;rs72078337;rs112184497;rs116794045;rs145802178		2012-702:2012-1308-T	g.chr2:71799364_71799385delCACAGATCACACCTAGCACACC	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron	NM_003494	NP_003485
RMND5A	64795	broad.mit.edu	37	2	87625439	87625439	+	Intron	DEL	G	-	-	rs143783582	by1000genomes	2012-702:2012-1308-T	g.chr2:87625439delG	uc002srs.3	+								
FBLN7	129804	broad.mit.edu	37	2	112918282	112918283	+	Intron	DEL	CA	-	-	rs5833435;rs3080966		2012-702:2012-1308-T	g.chr2:112918282_112918283delCA	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
FBLN7	129804	broad.mit.edu	37	2	112918316	112918317	+	Intron	DEL	CA	-	-	rs5833436;rs3080965		2012-702:2012-1308-T	g.chr2:112918316_112918317delCA	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
FBLN7	129804	broad.mit.edu	37	2	112918328	112918329	+	Intron	DEL	CG	-	-	rs5833437;rs28373572	by1000genomes	2012-702:2012-1308-T	g.chr2:112918328_112918329delCG	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
AGAP1	116987	broad.mit.edu	37	2	236672730	236672731	+	Intron	DEL	AT	-	-	rs139452833;rs2696409	byFrequency	2012-702:2012-1308-T	g.chr2:236672730_236672731delAT	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
KIF1A	547	broad.mit.edu	37	2	241752051	241752052	+	Intron	INS	-	A	A			2012-702:2012-1308-T	g.chr2:241752051_241752052insA	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
C20orf26	26074	broad.mit.edu	37	20	20338576	20338577	+	Intron	INS	-	TG	TG			2012-702:2012-1308-T	g.chr20:20338576_20338577insTG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
CDH4	1002	broad.mit.edu	37	20	59858167	59858188	+	Intron	DEL	ACGTGCGTTTGCACGCGCGTGC	-	-	rs146204447	by1000genomes	2012-702:2012-1308-T	g.chr20:59858167_59858188delACGTGCGTTTGCACGCGCGTGC	uc002ybn.1	+							NM_001794	NP_001785
ZBTB46	140685	broad.mit.edu	37	20	62447481	62447495	+	Intron	DEL	GCAGGTGCAGTGGGT	-	-	rs5842433;rs4997553	by1000genomes	2012-702:2012-1308-T	g.chr20:62447481_62447495delGCAGGTGCAGTGGGT	uc002ygu.2	-						uc002ygw.2_Intron	NM_025224	
UCKL1	54963	broad.mit.edu	37	20	62579932	62579932	+	Intron	DEL	A	-	-	rs60744241	by1000genomes	2012-702:2012-1308-T	g.chr20:62579932delA	uc010gkn.2	-						UCKL1_uc011abm.1_Intron|UCKL1_uc011abn.1_Intron|UCKL1_uc011abo.1_Intron	NM_017859	NP_060329
MYT1	4661	broad.mit.edu	37	20	62833352	62833353	+	Intron	INS	-	T	T	rs147803193	by1000genomes	2012-702:2012-1308-T	g.chr20:62833352_62833353insT	uc002yii.2	+						MYT1_uc002yih.2_Intron	NM_004535	NP_004526
MYT1	4661	broad.mit.edu	37	20	62833371	62833371	+	Intron	DEL	C	-	-			2012-702:2012-1308-T	g.chr20:62833371delC	uc002yii.2	+						MYT1_uc002yih.2_Intron	NM_004535	NP_004526
TRAPPC10	7109	broad.mit.edu	37	21	45508674	45508675	+	Intron	INS	-	C	C	rs141699369;rs35761683	by1000genomes	2012-702:2012-1308-T	g.chr21:45508674_45508675insC	uc002zea.2	+						TRAPPC10_uc010gpo.2_Intron|TRAPPC10_uc011afa.1_Intron|TRAPPC10_uc011afb.1_5'Flank	NM_003274	NP_003265
ADARB1	104	broad.mit.edu	37	21	46554035	46554036	+	Intron	DEL	GC	-	-			2012-702:2012-1308-T	g.chr21:46554035_46554036delGC	uc002zgy.2	+						ADARB1_uc002zgp.2_Intron|ADARB1_uc002zgr.2_Intron|ADARB1_uc002zgs.2_Intron|ADARB1_uc002zgw.2_Intron|ADARB1_uc002zgv.2_Intron|ADARB1_uc002zgt.2_Intron|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_Intron|ADARB1_uc002zgu.2_Intron	NM_015833	NP_056648
COL18A1	80781	broad.mit.edu	37	21	46904054	46904055	+	Intron	INS	-	AC	AC	rs144630058;rs67624658	by1000genomes	2012-702:2012-1308-T	g.chr21:46904054_46904055insAC	uc011afs.1	+						COL18A1_uc002zhg.2_Intron|COL18A1_uc002zhi.2_Intron	NM_130444	NP_569711
SLC19A1	6573	broad.mit.edu	37	21	46947500	46947500	+	Intron	DEL	A	-	-	rs4818788		2012-702:2012-1308-T	g.chr21:46947500delA	uc002zhl.1	-						SLC19A1_uc010gpy.1_Intron|SLC19A1_uc011aft.1_Intron|SLC19A1_uc002zhm.1_Intron|SLC19A1_uc010gpz.1_Intron	NM_194255	NP_919231
PCBP3	54039	broad.mit.edu	37	21	47235728	47235734	+	Intron	DEL	GTGAGTG	-	-			2012-702:2012-1308-T	g.chr21:47235728_47235734delGTGAGTG	uc010gqb.2	+							NM_020528	NP_065389
MPPED1	758	broad.mit.edu	37	22	43887611	43887612	+	Intron	INS	-	GGTGGTGGTGATGGA	GGTGGTGGTGATGGA			2012-702:2012-1308-T	g.chr22:43887611_43887612insGGTGGTGGTGATGGA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
KIAA1644	85352	broad.mit.edu	37	22	44665409	44665410	+	Intron	DEL	AC	-	-	rs142804654		2012-702:2012-1308-T	g.chr22:44665409_44665410delAC	uc003bet.2	-							NM_001099294	NP_001092764
TTLL8	164714	broad.mit.edu	37	22	50495574	50495575	+	5'Flank	INS	-	G	G			2012-702:2012-1308-T	g.chr22:50495574_50495575insG	uc011ark.1	-							NM_001080447	NP_001073916
TTLL8	164714	broad.mit.edu	37	22	50495582	50495583	+	5'Flank	INS	-	A	A	rs144819376	by1000genomes	2012-702:2012-1308-T	g.chr22:50495582_50495583insA	uc011ark.1	-							NM_001080447	NP_001073916
ADCY5	111	broad.mit.edu	37	3	123102773	123102778	+	Intron	DEL	CACACA	-	-			2012-702:2012-1308-T	g.chr3:123102773_123102778delCACACA	uc003egh.1	-						ADCY5_uc003egg.1_Intron|ADCY5_uc003egi.1_Intron	NM_183357	NP_899200
ABLIM2	84448	broad.mit.edu	37	4	8133592	8133592	+	Intron	DEL	C	-	-			2012-702:2012-1308-T	g.chr4:8133592delC	uc003gko.2	-						ABLIM2_uc003gkj.3_Intron|ABLIM2_uc003gkm.3_Intron|ABLIM2_uc003gkp.2_Intron|ABLIM2_uc003gkq.2_Intron|ABLIM2_uc003gkr.2_Intron|ABLIM2_uc003gks.3_Intron	NM_001130084	NP_001123556
ABLIM2	84448	broad.mit.edu	37	4	8133596	8133597	+	Intron	INS	-	GA	GA			2012-702:2012-1308-T	g.chr4:8133596_8133597insGA	uc003gko.2	-						ABLIM2_uc003gkj.3_Intron|ABLIM2_uc003gkm.3_Intron|ABLIM2_uc003gkp.2_Intron|ABLIM2_uc003gkq.2_Intron|ABLIM2_uc003gkr.2_Intron|ABLIM2_uc003gks.3_Intron	NM_001130084	NP_001123556
MAML3	55534	broad.mit.edu	37	4	140811084	140811084	+	Frame_Shift_Del	DEL	C	-	-	rs12506879	by1000genomes	2012-702:2012-1308-T	g.chr4:140811084delC	uc003ihz.1	-	2	2258	c.1506delG	c.(1504-1506)CAGfs	p.Q502fs	MAML3_uc011chd.1_Intron	NM_018717	NP_061187
MAML3	55534	broad.mit.edu	37	4	140811086	140811096	+	Frame_Shift_Del	DEL	GCTGCTGCTGC	-	-	rs67877726;rs72161425;rs79090010	by1000genomes	2012-702:2012-1308-T	g.chr4:140811086_140811096delGCTGCTGCTGC	uc003ihz.1	-	2	2246_2256	c.1494_1504delGCAGCAGCAGC	c.(1492-1506)CAGCAGCAGCAGCAGfs	p.Q498fs	MAML3_uc011chd.1_Intron	NM_018717	NP_061187
INPP4B	8821	broad.mit.edu	37	4	143768570	143768571	+	5'Flank	INS	-	C	C			2012-702:2012-1308-T	g.chr4:143768570_143768571insC	uc003iix.3	-						INPP4B_uc003iiw.3_5'Flank	NM_003866	NP_003857
CEP72	55722	broad.mit.edu	37	5	611386	611397	+	5'Flank	DEL	CCCCTACACACT	-	-			2012-702:2012-1308-T	g.chr5:611386_611397delCCCCTACACACT	uc003jbf.2	+						CEP72_uc011clz.1_5'Flank	NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	648791	648792	+	Intron	DEL	TG	-	-			2012-702:2012-1308-T	g.chr5:648791_648792delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649751	649752	+	Intron	INS	-	G	G			2012-702:2012-1308-T	g.chr5:649751_649752insG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650946	650947	+	Intron	DEL	TG	-	-			2012-702:2012-1308-T	g.chr5:650946_650947delTG	uc003jbf.2	+							NM_018140	NP_060610
SLC12A7	10723	broad.mit.edu	37	5	1072147	1072147	+	Intron	DEL	C	-	-			2012-702:2012-1308-T	g.chr5:1072147delC	uc003jbu.2	-							NM_006598	NP_006589
SLIT3	6586	broad.mit.edu	37	5	168717321	168717322	+	Intron	INS	-	G	G	rs144194903	by1000genomes	2012-702:2012-1308-T	g.chr5:168717321_168717322insG	uc003mab.2	-						SLIT3_uc010jjg.2_Intron|SLIT3_uc010jji.2_Intron	NM_003062	NP_003053
RNF130	55819	broad.mit.edu	37	5	179442548	179442548	+	Intron	DEL	G	-	-			2012-702:2012-1308-T	g.chr5:179442548delG	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
SYNE1	23345	broad.mit.edu	37	6	152685873	152685873	+	Intron	DEL	A	-	-			2012-702:2012-1308-T	g.chr6:152685873delA	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
SYNE1	23345	broad.mit.edu	37	6	152685880	152685881	+	Intron	DEL	AG	-	-			2012-702:2012-1308-T	g.chr6:152685880_152685881delAG	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kja.1_Intron	NM_182961	NP_892006
SMOC2	64094	broad.mit.edu	37	6	169014649	169014650	+	Intron	DEL	GG	-	-			2012-702:2012-1308-T	g.chr6:169014649_169014650delGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
SMOC2	64094	broad.mit.edu	37	6	169025511	169025512	+	Intron	DEL	AC	-	-			2012-702:2012-1308-T	g.chr6:169025511_169025512delAC	uc003qws.1	+						SMOC2_uc003qwr.1_Intron|SMOC2_uc011egu.1_Intron	NM_022138	NP_071421
PSMB1	5689	broad.mit.edu	37	6	170783956	170783956	+	Intron	DEL	C	-	-	rs112303146		2012-702:2012-1308-T	g.chr6:170783956delC	uc003qxq.2	-							NM_002793	
ADAP1	11033	broad.mit.edu	37	7	946218	946218	+	Intron	DEL	A	-	-			2012-702:2012-1308-T	g.chr7:946218delA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
C7orf50	84310	broad.mit.edu	37	7	1055883	1055892	+	Intron	DEL	CAGCGCACGC	-	-	rs74188090;rs140195333;rs74207440	by1000genomes	2012-702:2012-1308-T	g.chr7:1055883_1055892delCAGCGCACGC	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1056049	1056058	+	Intron	DEL	CAGCGCACGC	-	-	rs144970899	by1000genomes	2012-702:2012-1308-T	g.chr7:1056049_1056058delCAGCGCACGC	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
C7orf50	84310	broad.mit.edu	37	7	1056479	1056495	+	Intron	DEL	CAGCACACAGCAGCACA	-	-	rs145295012;rs117938345;rs115962408;rs145134688;rs117736329;rs11268207	by1000genomes;by1000genomes;by1000genomes;by1000genomes;by1000genomes	2012-702:2012-1308-T	g.chr7:1056479_1056495delCAGCACACAGCAGCACA	uc003sju.2	-						C7orf50_uc003sjs.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron	NM_032350	NP_115726
MAD1L1	8379	broad.mit.edu	37	7	2116710	2116714	+	Intron	DEL	CAGAG	-	-	rs58483040;rs61000728		2012-702:2012-1308-T	g.chr7:2116710_2116714delCAGAG	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
MAD1L1	8379	broad.mit.edu	37	7	2116716	2116737	+	Intron	DEL	TACGACTTGGTGAGCCCGCGGC	-	-	rs61537406;rs72033589;rs73672088;rs149755464;rs115909172;rs3778942	by1000genomes;by1000genomes;by1000genomes	2012-702:2012-1308-T	g.chr7:2116716_2116737delTACGACTTGGTGAGCCCGCGGC	uc003slh.1	-						MAD1L1_uc003sle.1_Intron|MAD1L1_uc003slf.1_Intron|MAD1L1_uc003slg.1_Intron|MAD1L1_uc010ksh.1_Intron|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Intron|MAD1L1_uc010ksj.2_Intron	NM_001013836	NP_001013858
EGFR	1956	broad.mit.edu	37	7	55235106	55235106	+	Intron	DEL	A	-	-	rs13228158		2012-702:2012-1308-T	g.chr7:55235106delA	uc003tqk.2	+						EGFR_uc003tqi.2_Intron|EGFR_uc003tqj.2_Intron|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Intron|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
EGFR	1956	broad.mit.edu	37	7	55235108	55235115	+	Intron	DEL	GAGGGTGG	-	-	rs13240461		2012-702:2012-1308-T	g.chr7:55235108_55235115delGAGGGTGG	uc003tqk.2	+						EGFR_uc003tqi.2_Intron|EGFR_uc003tqj.2_Intron|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Intron|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron	NM_005228	NP_005219
C7orf23	79161	broad.mit.edu	37	7	86838928	86838929	+	Intron	INS	-	AG	AG			2012-702:2012-1308-T	g.chr7:86838928_86838929insAG	uc003uio.2	-							NM_024315	NP_077291
PLXNA4	91584	broad.mit.edu	37	7	132247127	132247129	+	Intron	DEL	CCT	-	-			2012-702:2012-1308-T	g.chr7:132247127_132247129delCCT	uc003vra.3	-						PLXNA4_uc003vrc.2_Intron|PLXNA4_uc003vrb.2_Intron	NM_020911	NP_065962
PTPRN2	5799	broad.mit.edu	37	7	157941323	157941324	+	Intron	INS	-	C	C			2012-702:2012-1308-T	g.chr7:157941323_157941324insC	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
PEBP4	157310	broad.mit.edu	37	8	22623306	22623307	+	Intron	INS	-	A	A	rs61315444;rs35035196		2012-702:2012-1308-T	g.chr8:22623306_22623307insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623307	22623308	+	Intron	INS	-	TC	TC	rs35035196;rs56184904		2012-702:2012-1308-T	g.chr8:22623307_22623308insTC	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623369	22623370	+	Intron	INS	-	TC	TC	rs66898805;rs62494989		2012-702:2012-1308-T	g.chr8:22623369_22623370insTC	uc003xcn.1	-							NM_144962	NP_659399
KIAA0146	23514	broad.mit.edu	37	8	48676524	48676525	+	Intron	DEL	AT	-	-			2012-702:2012-1308-T	g.chr8:48676524_48676525delAT	uc003xqg.1	+								
COL22A1	169044	broad.mit.edu	37	8	139817262	139817273	+	Intron	DEL	GTGTGTGTGATA	-	-	rs13256015		2012-702:2012-1308-T	g.chr8:139817262_139817273delGTGTGTGTGATA	uc003yvd.2	-							NM_152888	NP_690848
POMT1	10585	broad.mit.edu	37	9	134391543	134391544	+	Intron	INS	-	CTTC	CTTC	rs146610882	by1000genomes	2012-702:2012-1308-T	g.chr9:134391543_134391544insCTTC	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
TTF1	7270	broad.mit.edu	37	9	135253040	135253041	+	Intron	DEL	GT	-	-	rs148102891	by1000genomes	2012-702:2012-1308-T	g.chr9:135253040_135253041delGT	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
TTF1	7270	broad.mit.edu	37	9	135253638	135253640	+	Intron	DEL	GTG	-	-			2012-702:2012-1308-T	g.chr9:135253638_135253640delGTG	uc004cbl.2	-						TTF1_uc011mcp.1_Intron|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370
COL5A1	1289	broad.mit.edu	37	9	137602468	137602468	+	Intron	DEL	A	-	-	rs72508227		2012-702:2012-1308-T	g.chr9:137602468delA	uc004cfe.2	+							NM_000093	NP_000084
TRAF2	7186	broad.mit.edu	37	9	139792180	139792180	+	Intron	DEL	C	-	-			2012-702:2012-1308-T	g.chr9:139792180delC	uc010nbu.2	+						TRAF2_uc010nbv.1_Intron|TRAF2_uc004cjv.2_Intron|TRAF2_uc011mek.1_Intron|TRAF2_uc010nbw.2_Intron	NM_021138	NP_066961
EXD3	54932	broad.mit.edu	37	9	140250173	140250174	+	Intron	INS	-	G	G			2012-702:2012-1308-T	g.chr9:140250173_140250174insG	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Intron	NM_017820	NP_060290
AGRN	375790	broad.mit.edu	37	1	965743	965744	+	Intron	DEL	TG	-	-			2012-703:2012-1309-T	g.chr1:965743_965744delTG	uc001ack.1	+							NM_198576	NP_940978
AGRN	375790	broad.mit.edu	37	1	965799	965800	+	Intron	DEL	GT	-	-			2012-703:2012-1309-T	g.chr1:965799_965800delGT	uc001ack.1	+							NM_198576	NP_940978
AGRN	375790	broad.mit.edu	37	1	965825	965826	+	Intron	DEL	TG	-	-			2012-703:2012-1309-T	g.chr1:965825_965826delTG	uc001ack.1	+							NM_198576	NP_940978
SCNN1D	6339	broad.mit.edu	37	1	1224006	1224007	+	Intron	DEL	CC	-	-			2012-703:2012-1309-T	g.chr1:1224006_1224007delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1225288	1225289	+	Intron	INS	-	CC	CC			2012-703:2012-1309-T	g.chr1:1225288_1225289insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
TAS1R3	83756	broad.mit.edu	37	1	1265354	1265366	+	5'Flank	DEL	CGTGTGCCATGCA	-	-	rs150905345;rs77579059		2012-703:2012-1309-T	g.chr1:1265354_1265366delCGTGTGCCATGCA	uc010nyk.1	+							NM_152228	NP_689414
MORN1	79906	broad.mit.edu	37	1	2280152	2280159	+	Intron	DEL	CTGCGCGG	-	-			2012-703:2012-1309-T	g.chr1:2280152_2280159delCTGCGCGG	uc001ajb.1	-						MORN1_uc009vld.2_Intron	NM_024848	NP_079124
MORN1	79906	broad.mit.edu	37	1	2280297	2280298	+	Intron	DEL	GT	-	-			2012-703:2012-1309-T	g.chr1:2280297_2280298delGT	uc001ajb.1	-						MORN1_uc009vld.2_Intron	NM_024848	NP_079124
PRDM16	63976	broad.mit.edu	37	1	3187225	3187225	+	Intron	DEL	A	-	-			2012-703:2012-1309-T	g.chr1:3187225delA	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
MEGF6	1953	broad.mit.edu	37	1	3418648	3418648	+	Intron	DEL	C	-	-			2012-703:2012-1309-T	g.chr1:3418648delC	uc001akl.2	-						MEGF6_uc001akk.2_Intron	NM_001409	NP_001400
MEGF6	1953	broad.mit.edu	37	1	3418658	3418660	+	Intron	DEL	CCT	-	-			2012-703:2012-1309-T	g.chr1:3418658_3418660delCCT	uc001akl.2	-						MEGF6_uc001akk.2_Intron	NM_001409	NP_001400
GUCA2A	2980	broad.mit.edu	37	1	42633114	42633115	+	5'Flank	INS	-	TGAGG	TGAGG	rs150434346;rs138148984	by1000genomes	2012-703:2012-1309-T	g.chr1:42633114_42633115insTGAGG	uc001chd.1	-							NM_033553	NP_291031
FAIM3	9214	broad.mit.edu	37	1	207097751	207097756	+	5'Flank	DEL	TGTGTG	-	-			2012-703:2012-1309-T	g.chr1:207097751_207097756delTGTGTG	uc001hey.2	-						FAIM3_uc010prz.1_5'Flank|FAIM3_uc010psa.1_5'Flank|FAIM3_uc010psb.1_5'Flank	NM_005449	NP_005440
CNST	163882	broad.mit.edu	37	1	246783793	246783794	+	Intron	INS	-	G	G			2012-703:2012-1309-T	g.chr1:246783793_246783794insG	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
CNST	163882	broad.mit.edu	37	1	246783930	246783931	+	Intron	DEL	AA	-	-	rs113517024		2012-703:2012-1309-T	g.chr1:246783930_246783931delAA	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
ADARB2	105	broad.mit.edu	37	10	1613987	1613998	+	Intron	DEL	GGTGAGTGGACA	-	-	rs113971428		2012-703:2012-1309-T	g.chr10:1613987_1613998delGGTGAGTGGACA	uc009xhq.2	-							NM_018702	NP_061172
ANXA8	653145	broad.mit.edu	37	10	47058971	47058972	+	Intron	INS	-	CA	CA	rs144230274		2012-703:2012-1309-T	g.chr10:47058971_47058972insCA	uc001jed.3	-								
CCDC6	8030	broad.mit.edu	37	10	61642116	61642117	+	Intron	DEL	CG	-	-			2012-703:2012-1309-T	g.chr10:61642116_61642117delCG	uc001jks.3	-							NM_005436	NP_005427
HPSE2	60495	broad.mit.edu	37	10	100963623	100963624	+	Intron	INS	-	CCCGCTCCGCC	CCCGCTCCGCC	rs78743483;rs4919283	by1000genomes	2012-703:2012-1309-T	g.chr10:100963623_100963624insCCCGCTCCGCC	uc001kpn.1	-						HPSE2_uc009xwc.1_Intron|HPSE2_uc001kpo.1_Intron|HPSE2_uc009xwd.1_Intron	NM_021828	NP_068600
HPSE2	60495	broad.mit.edu	37	10	100963624	100963625	+	Intron	INS	-	GGC	GGC	rs4919283	by1000genomes	2012-703:2012-1309-T	g.chr10:100963624_100963625insGGC	uc001kpn.1	-						HPSE2_uc009xwc.1_Intron|HPSE2_uc001kpo.1_Intron|HPSE2_uc009xwd.1_Intron	NM_021828	NP_068600
GPR123	84435	broad.mit.edu	37	10	134893077	134893080	+	Intron	DEL	GAGA	-	-			2012-703:2012-1309-T	g.chr10:134893077_134893080delGAGA	uc001llw.2	+								
MAML2	84441	broad.mit.edu	37	11	95735853	95735855	+	Intron	DEL	GGG	-	-	rs71460637	by1000genomes	2012-703:2012-1309-T	g.chr11:95735853_95735855delGGG	uc001pfw.1	-							NM_032427	NP_115803
KIRREL3	84623	broad.mit.edu	37	11	126733358	126733359	+	Intron	DEL	GT	-	-	rs72096305		2012-703:2012-1309-T	g.chr11:126733358_126733359delGT	uc001qea.2	-						KIRREL3_uc001qeb.2_Intron|KIRREL3_uc001qec.1_Intron|KIRREL3_uc001qed.3_Intron	NM_032531	NP_115920
KIRREL3	84623	broad.mit.edu	37	11	126733390	126733393	+	Intron	DEL	GTGA	-	-	rs72371767		2012-703:2012-1309-T	g.chr11:126733390_126733393delGTGA	uc001qea.2	-						KIRREL3_uc001qeb.2_Intron|KIRREL3_uc001qec.1_Intron|KIRREL3_uc001qed.3_Intron	NM_032531	NP_115920
TSPAN9	10867	broad.mit.edu	37	12	3378085	3378086	+	Intron	INS	-	CC	CC			2012-703:2012-1309-T	g.chr12:3378085_3378086insCC	uc001qlp.2	+							NM_006675	NP_006666
TSPAN9	10867	broad.mit.edu	37	12	3378088	3378089	+	Intron	INS	-	CA	CA			2012-703:2012-1309-T	g.chr12:3378088_3378089insCA	uc001qlp.2	+							NM_006675	NP_006666
NCOR2	9612	broad.mit.edu	37	12	124952583	124952584	+	Intron	INS	-	TCC	TCC	rs147189850	by1000genomes	2012-703:2012-1309-T	g.chr12:124952583_124952584insTCC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
GPR133	283383	broad.mit.edu	37	12	131530780	131530780	+	Intron	DEL	C	-	-	rs72149353		2012-703:2012-1309-T	g.chr12:131530780delC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
GPR133	283383	broad.mit.edu	37	12	131578501	131578502	+	Intron	INS	-	C	C			2012-703:2012-1309-T	g.chr12:131578501_131578502insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
GPR133	283383	broad.mit.edu	37	12	131578555	131578556	+	Intron	INS	-	C	C			2012-703:2012-1309-T	g.chr12:131578555_131578556insC	uc001uit.3	+						GPR133_uc010tbm.1_Intron|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Intron	NM_198827	NP_942122
CHFR	55743	broad.mit.edu	37	12	133443164	133443181	+	Intron	DEL	GTTACAACACACCAGAAA	-	-	rs73157075	by1000genomes	2012-703:2012-1309-T	g.chr12:133443164_133443181delGTTACAACACACCAGAAA	uc001ulf.2	-						CHFR_uc001ulc.1_Intron|CHFR_uc001ule.2_Intron|CHFR_uc010tbs.1_Intron|CHFR_uc001uld.2_Intron|CHFR_uc010tbt.1_Intron	NM_001161344	NP_001154816
ZDHHC20	253832	broad.mit.edu	37	13	21951498	21951499	+	Intron	DEL	CT	-	-			2012-703:2012-1309-T	g.chr13:21951498_21951499delCT	uc001uob.2	-						ZDHHC20_uc001uod.2_Intron|ZDHHC20_uc001uoc.2_Intron|ZDHHC20_uc001uoe.2_Intron|ZDHHC20_uc010tcs.1_Intron|uc001uoa.1_5'Flank	NM_153251	NP_694983
ZDHHC20	253832	broad.mit.edu	37	13	21951540	21951541	+	Intron	DEL	CT	-	-	rs5802108		2012-703:2012-1309-T	g.chr13:21951540_21951541delCT	uc001uob.2	-						ZDHHC20_uc001uod.2_Intron|ZDHHC20_uc001uoc.2_Intron|ZDHHC20_uc001uoe.2_Intron|ZDHHC20_uc010tcs.1_Intron|uc001uoa.1_5'Flank	NM_153251	NP_694983
COL4A2	1284	broad.mit.edu	37	13	111008187	111008187	+	Intron	DEL	T	-	-	rs77173843		2012-703:2012-1309-T	g.chr13:111008187delT	uc001vqx.2	+							NM_001846	NP_001837
COL4A2	1284	broad.mit.edu	37	13	111133550	111133550	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr13:111133550delT	uc001vqx.2	+							NM_001846	NP_001837
COL4A2	1284	broad.mit.edu	37	13	111133700	111133700	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr13:111133700delT	uc001vqx.2	+							NM_001846	NP_001837
MCF2L	23263	broad.mit.edu	37	13	113713273	113713283	+	Intron	DEL	TGTTTCAGCGC	-	-	rs111740656;rs143729355;rs28410959;rs28490502;rs141372551	by1000genomes	2012-703:2012-1309-T	g.chr13:113713273_113713283delTGTTTCAGCGC	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron|MCF2L_uc001vst.1_Intron	NM_001112732	NP_001106203
F7	2155	broad.mit.edu	37	13	113762882	113762883	+	Intron	INS	-	T	T	rs76788797		2012-703:2012-1309-T	g.chr13:113762882_113762883insT	uc001vsv.2	+						F7_uc010agp.1_Intron|F7_uc001vsw.2_Intron|F7_uc010tjt.1_Intron	NM_000131	NP_000122
GRTP1	79774	broad.mit.edu	37	13	113986628	113986629	+	Intron	DEL	CA	-	-			2012-703:2012-1309-T	g.chr13:113986628_113986629delCA	uc001vtn.2	-						GRTP1_uc010tkb.1_Intron|GRTP1_uc010tkc.1_Intron	NM_024719	NP_078995
TFDP1	7027	broad.mit.edu	37	13	114279379	114279380	+	Intron	DEL	TC	-	-			2012-703:2012-1309-T	g.chr13:114279379_114279380delTC	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
TFDP1	7027	broad.mit.edu	37	13	114279400	114279401	+	Intron	DEL	TC	-	-			2012-703:2012-1309-T	g.chr13:114279400_114279401delTC	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
TFDP1	7027	broad.mit.edu	37	13	114279887	114279888	+	Intron	INS	-	T	T			2012-703:2012-1309-T	g.chr13:114279887_114279888insT	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
TFDP1	7027	broad.mit.edu	37	13	114279896	114279896	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr13:114279896delT	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
TFDP1	7027	broad.mit.edu	37	13	114279899	114279899	+	Intron	DEL	C	-	-			2012-703:2012-1309-T	g.chr13:114279899delC	uc001vtw.2	+						TFDP1_uc010tkd.1_Intron|TFDP1_uc010tke.1_Intron|TFDP1_uc001vty.3_Intron|TFDP1_uc010agx.2_Intron	NM_007111	NP_009042
GRK1	6011	broad.mit.edu	37	13	114431029	114431031	+	Intron	DEL	AGT	-	-			2012-703:2012-1309-T	g.chr13:114431029_114431031delAGT	uc010tkf.1	+							NM_002929	NP_002920
TRAF3	7187	broad.mit.edu	37	14	103296825	103296826	+	Intron	INS	-	TTG	TTG	rs146102070;rs149232185	by1000genomes	2012-703:2012-1309-T	g.chr14:103296825_103296826insTTG	uc001ymc.1	+						TRAF3_uc001yme.1_Intron|TRAF3_uc001ymd.1_Intron|TRAF3_uc010txy.1_Intron	NM_145725	NP_663777
KIF26A	26153	broad.mit.edu	37	14	104631874	104631875	+	Intron	INS	-	TC	TC	rs141671546	by1000genomes	2012-703:2012-1309-T	g.chr14:104631874_104631875insTC	uc001yos.3	+							NM_015656	NP_056471
INF2	64423	broad.mit.edu	37	14	105187397	105187404	+	Intron	DEL	CGTAGTCT	-	-	rs72130729;rs66700474		2012-703:2012-1309-T	g.chr14:105187397_105187404delCGTAGTCT	uc010tyi.1	+							NM_022489	NP_071934
FRMD5	84978	broad.mit.edu	37	15	44282197	44282197	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr15:44282197delT	uc001ztl.2	-						FRMD5_uc001ztk.1_Intron|FRMD5_uc001ztm.2_Intron|FRMD5_uc001ztn.2_Intron	NM_032892	NP_116281
ETFA	2108	broad.mit.edu	37	15	76552276	76552276	+	Intron	DEL	A	-	-			2012-703:2012-1309-T	g.chr15:76552276delA	uc002bbt.2	-						ETFA_uc010bkq.1_Intron|ETFA_uc002bbu.1_Intron	NM_000126	NP_000117
ETFA	2108	broad.mit.edu	37	15	76552278	76552284	+	Intron	DEL	AGGCTCA	-	-	rs150112182	by1000genomes	2012-703:2012-1309-T	g.chr15:76552278_76552284delAGGCTCA	uc002bbt.2	-						ETFA_uc010bkq.1_Intron|ETFA_uc002bbu.1_Intron	NM_000126	NP_000117
BAIAP3	8938	broad.mit.edu	37	16	1389902	1389903	+	Intron	INS	-	GG	GG			2012-703:2012-1309-T	g.chr16:1389902_1389903insGG	uc002clk.1	+						BAIAP3_uc002clj.2_Intron|BAIAP3_uc010uuz.1_Intron|BAIAP3_uc010uva.1_Intron|BAIAP3_uc010uvb.1_Intron|BAIAP3_uc010uvc.1_Intron	NM_003933	NP_003924
CDH15	1013	broad.mit.edu	37	16	89255670	89255671	+	Intron	INS	-	AG	AG			2012-703:2012-1309-T	g.chr16:89255670_89255671insAG	uc002fmt.2	+							NM_004933	NP_004924
ABR	29	broad.mit.edu	37	17	1021795	1021795	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr17:1021795delT	uc002fsd.2	-						ABR_uc002fse.2_Intron|ABR_uc010cjq.1_Intron	NM_021962	NP_068781
TUSC5	286753	broad.mit.edu	37	17	1189854	1189854	+	Intron	DEL	G	-	-			2012-703:2012-1309-T	g.chr17:1189854delG	uc002fsi.1	+							NM_172367	NP_758955
ITGAE	3682	broad.mit.edu	37	17	3699403	3699404	+	Intron	INS	-	TGTG	TGTG	rs36045415;rs146559224		2012-703:2012-1309-T	g.chr17:3699403_3699404insTGTG	uc002fwo.3	-							NM_002208	NP_002199
ITGAE	3682	broad.mit.edu	37	17	3699414	3699415	+	Intron	INS	-	GT	GT	rs80153256		2012-703:2012-1309-T	g.chr17:3699414_3699415insGT	uc002fwo.3	-							NM_002208	NP_002199
KAT2A	2648	broad.mit.edu	37	17	40267460	40267461	+	Intron	INS	-	C	C			2012-703:2012-1309-T	g.chr17:40267460_40267461insC	uc002hyx.2	-						DHX58_uc002hyw.3_5'Flank|DHX58_uc010wgf.1_5'Flank	NM_021078	NP_066564
RPTOR	57521	broad.mit.edu	37	17	78608513	78608514	+	Intron	INS	-	GC	GC			2012-703:2012-1309-T	g.chr17:78608513_78608514insGC	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78814415	78814417	+	Intron	DEL	ACA	-	-			2012-703:2012-1309-T	g.chr17:78814415_78814417delACA	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78815477	78815480	+	Intron	DEL	CACT	-	-	rs67971586;rs74211476		2012-703:2012-1309-T	g.chr17:78815477_78815480delCACT	uc002jyt.1	+						RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
RPTOR	57521	broad.mit.edu	37	17	78867272	78867285	+	Intron	DEL	TGTACGCGCCAGGG	-	-	rs35094292;rs4315400;rs4555209		2012-703:2012-1309-T	g.chr17:78867272_78867285delTGTACGCGCCAGGG	uc002jyt.1	+						RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
TBCD	6904	broad.mit.edu	37	17	80807802	80807803	+	Intron	INS	-	GCTC	GCTC			2012-703:2012-1309-T	g.chr17:80807802_80807803insGCTC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TBCD	6904	broad.mit.edu	37	17	80807804	80807805	+	Intron	INS	-	C	C			2012-703:2012-1309-T	g.chr17:80807804_80807805insC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TBCD	6904	broad.mit.edu	37	17	80807833	80807834	+	Intron	INS	-	CTCTT	CTCTT			2012-703:2012-1309-T	g.chr17:80807833_80807834insCTCTT	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
GALR1	2587	broad.mit.edu	37	18	74970969	74970974	+	Intron	DEL	TGGTGT	-	-			2012-703:2012-1309-T	g.chr18:74970969_74970974delTGGTGT	uc002lms.3	+							NM_001480	NP_001471
ZNF554	115196	broad.mit.edu	37	19	2818004	2818005	+	5'Flank	INS	-	C	C			2012-703:2012-1309-T	g.chr19:2818004_2818005insC	uc002lwm.2	+						ZNF554_uc002lwl.2_5'Flank	NM_001102651	NP_001096121
KDM4B	23030	broad.mit.edu	37	19	5019306	5019317	+	Intron	DEL	GGTGTTGGTGTG	-	-			2012-703:2012-1309-T	g.chr19:5019306_5019317delGGTGTTGGTGTG	uc002mbq.3	+						KDM4B_uc010xil.1_Intron|KDM4B_uc010xim.1_Intron	NM_015015	NP_055830
NOTCH3	4854	broad.mit.edu	37	19	15273583	15273584	+	Intron	DEL	TT	-	-	rs5827278;rs57540484		2012-703:2012-1309-T	g.chr19:15273583_15273584delTT	uc002nan.2	-							NM_000435	NP_000426
NOTCH3	4854	broad.mit.edu	37	19	15273600	15273605	+	Intron	DEL	GTGTGC	-	-	rs4019573;rs757473	by1000genomes	2012-703:2012-1309-T	g.chr19:15273600_15273605delGTGTGC	uc002nan.2	-							NM_000435	NP_000426
ZNF790	388536	broad.mit.edu	37	19	37329018	37329031	+	Intron	DEL	ACACACACACACAT	-	-	rs56260506;rs72210281		2012-703:2012-1309-T	g.chr19:37329018_37329031delACACACACACACAT	uc002oew.2	-							NM_206894	NP_996777
ZNF547	284306	broad.mit.edu	37	19	58010850	58010851	+	Intron	INS	-	CAT	CAT			2012-703:2012-1309-T	g.chr19:58010850_58010851insCAT	uc002qpm.3	+						ZNF773_uc002qox.2_5'Flank|ZNF773_uc002qoy.2_5'Flank|ZNF773_uc002qoz.2_5'Flank		
SH3YL1	26751	broad.mit.edu	37	2	236216	236218	+	Intron	DEL	GCA	-	-			2012-703:2012-1309-T	g.chr2:236216_236218delGCA	uc002qvx.2	-						SH3YL1_uc002qvy.2_Intron|SH3YL1_uc002qvz.2_Intron|SH3YL1_uc002qwa.2_Intron|SH3YL1_uc010ewe.2_Intron|SH3YL1_uc002qvu.2_Intron|SH3YL1_uc002qvv.2_Intron|SH3YL1_uc002qvw.2_Intron	NM_015677	NP_056492
SNTG2	54221	broad.mit.edu	37	2	1112724	1112739	+	Intron	DEL	CTGGTGTGTGGGTGCT	-	-	rs76867340;rs73154609		2012-703:2012-1309-T	g.chr2:1112724_1112739delCTGGTGTGTGGGTGCT	uc002qwq.2	+						SNTG2_uc002qwp.2_Intron|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
SNTG2	54221	broad.mit.edu	37	2	1282741	1282741	+	Intron	DEL	A	-	-			2012-703:2012-1309-T	g.chr2:1282741delA	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
SNTG2	54221	broad.mit.edu	37	2	1282854	1282855	+	Intron	DEL	CT	-	-	rs71902048		2012-703:2012-1309-T	g.chr2:1282854_1282855delCT	uc002qwq.2	+						SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841
PXDN	7837	broad.mit.edu	37	2	1715212	1715213	+	Intron	INS	-	CT	CT			2012-703:2012-1309-T	g.chr2:1715212_1715213insCT	uc002qxa.2	-						PXDN_uc002qxb.1_Intron|PXDN_uc002qxc.1_Intron	NM_012293	NP_036425
DYSF	8291	broad.mit.edu	37	2	71799364	71799385	+	Intron	DEL	CACAGATCACACCTAGCACACC	-	-	rs70959302;rs72078337;rs112184497;rs116794045;rs145802178		2012-703:2012-1309-T	g.chr2:71799364_71799385delCACAGATCACACCTAGCACACC	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron	NM_003494	NP_003485
FBLN7	129804	broad.mit.edu	37	2	112918282	112918283	+	Intron	DEL	CA	-	-	rs5833435;rs3080966		2012-703:2012-1309-T	g.chr2:112918282_112918283delCA	uc002tho.1	+						FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Intron|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946
GAD1	2571	broad.mit.edu	37	2	171685163	171685163	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr2:171685163delT	uc002ugi.2	+						GAD1_uc002ugh.2_Intron	NM_000817	NP_000808
AGAP1	116987	broad.mit.edu	37	2	236711446	236711447	+	Intron	INS	-	TGA	TGA			2012-703:2012-1309-T	g.chr2:236711446_236711447insTGA	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
AGAP1	116987	broad.mit.edu	37	2	236711459	236711460	+	Intron	INS	-	GGA	GGA	rs146464470;rs77575751		2012-703:2012-1309-T	g.chr2:236711459_236711460insGGA	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
KIF1A	547	broad.mit.edu	37	2	241752051	241752052	+	Intron	INS	-	A	A			2012-703:2012-1309-T	g.chr2:241752051_241752052insA	uc002vzy.2	-						KIF1A_uc010fzk.2_Intron|KIF1A_uc002vzz.1_Intron	NM_004321	NP_004312
C20orf26	26074	broad.mit.edu	37	20	20335590	20335591	+	Intron	INS	-	AG	AG	rs66801568		2012-703:2012-1309-T	g.chr20:20335590_20335591insAG	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20335596	20335597	+	Intron	INS	-	TC	TC	rs72227181		2012-703:2012-1309-T	g.chr20:20335596_20335597insTC	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20337251	20337251	+	Intron	DEL	C	-	-			2012-703:2012-1309-T	g.chr20:20337251delC	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
C20orf26	26074	broad.mit.edu	37	20	20337351	20337352	+	Intron	INS	-	GA	GA	rs68079262		2012-703:2012-1309-T	g.chr20:20337351_20337352insGA	uc002wru.2	+						C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400
GNAS	2778	broad.mit.edu	37	20	57474789	57474790	+	Intron	DEL	CA	-	-			2012-703:2012-1309-T	g.chr20:57474789_57474790delCA	uc002xzw.2	+						GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_Intron|GNAS_uc002xzx.2_Intron|GNAS_uc010gjr.2_Intron|GNAS_uc002xzy.2_Intron|GNAS_uc002yaa.2_Intron|GNAS_uc010zzt.1_Intron|GNAS_uc002yab.2_Intron|GNAS_uc002yad.2_Intron	NM_080425	NP_536350
ZBTB46	140685	broad.mit.edu	37	20	62447425	62447434	+	Intron	DEL	GTGGGCACAG	-	-			2012-703:2012-1309-T	g.chr20:62447425_62447434delGTGGGCACAG	uc002ygu.2	-						uc002ygw.2_Intron	NM_025224	
C21orf56	84221	broad.mit.edu	37	21	47590789	47590789	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr21:47590789delT	uc011afu.1	-						C21orf56_uc002zii.2_Intron	NM_001142854	NP_001136326
MPPED1	758	broad.mit.edu	37	22	43828603	43828604	+	Intron	DEL	GA	-	-			2012-703:2012-1309-T	g.chr22:43828603_43828604delGA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
IFT122	55764	broad.mit.edu	37	3	129235130	129235131	+	Intron	DEL	CA	-	-			2012-703:2012-1309-T	g.chr3:129235130_129235131delCA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
GAK	2580	broad.mit.edu	37	4	850187	850199	+	Intron	DEL	CACCACAGCTGCT	-	-	rs6148269		2012-703:2012-1309-T	g.chr4:850187_850199delCACCACAGCTGCT	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	850340	850342	+	Intron	DEL	CAC	-	-			2012-703:2012-1309-T	g.chr4:850340_850342delCAC	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
RNF212	285498	broad.mit.edu	37	4	1072788	1072798	+	Intron	DEL	AGGACCAACAC	-	-	rs34558698;rs79620907		2012-703:2012-1309-T	g.chr4:1072788_1072798delAGGACCAACAC	uc003gcj.2	-						RNF212_uc003gch.2_Intron|RNF212_uc003gci.2_Intron|RNF212_uc010ibp.2_Intron|RNF212_uc010ibq.2_Intron	NM_001131034	NP_001124506
HTT	3064	broad.mit.edu	37	4	3181332	3181333	+	Intron	DEL	GT	-	-			2012-703:2012-1309-T	g.chr4:3181332_3181333delGT	uc011bvq.1	+							NM_002111	NP_002102
CRMP1	1400	broad.mit.edu	37	4	5858673	5858675	+	Intron	DEL	CAT	-	-			2012-703:2012-1309-T	g.chr4:5858673_5858675delCAT	uc003gip.2	-						CRMP1_uc003gin.1_Intron|CRMP1_uc003giq.2_Intron|CRMP1_uc003gir.2_Intron|CRMP1_uc003gis.2_Intron	NM_001313	NP_001304
DSPP	1834	broad.mit.edu	37	4	88537073	88537081	+	In_Frame_Del	DEL	AGCAGTGAC	-	-			2012-703:2012-1309-T	g.chr4:88537073_88537081delAGCAGTGAC	uc003hqu.2	+	5	3379_3387	c.3259_3267delAGCAGTGAC	c.(3259-3267)AGCAGTGACdel	p.SSD1087del		NM_014208	NP_055023
DSPP	1834	broad.mit.edu	37	4	88537298	88537306	+	In_Frame_Del	DEL	AGCAGCGAT	-	-	rs150385148;rs71902617;rs138015586	by1000genomes;by1000genomes	2012-703:2012-1309-T	g.chr4:88537298_88537306delAGCAGCGAT	uc003hqu.2	+	5	3604_3612	c.3484_3492delAGCAGCGAT	c.(3484-3492)AGCAGCGATdel	p.SSD1174del		NM_014208	NP_055023
DSPP	1834	broad.mit.edu	37	4	88537448	88537456	+	In_Frame_Del	DEL	GACAGCAGC	-	-	rs142440372;rs111240022	by1000genomes;by1000genomes	2012-703:2012-1309-T	g.chr4:88537448_88537456delGACAGCAGC	uc003hqu.2	+	5	3754_3762	c.3634_3642delGACAGCAGC	c.(3634-3642)GACAGCAGCdel	p.DSS1227del		NM_014208	NP_055023
MTNR1A	4543	broad.mit.edu	37	4	187462024	187462025	+	Intron	INS	-	CTGA	CTGA			2012-703:2012-1309-T	g.chr4:187462024_187462025insCTGA	uc003izd.1	-							NM_005958	NP_005949
CEP72	55722	broad.mit.edu	37	5	648999	648999	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr5:648999delT	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649570	649571	+	Intron	DEL	TG	-	-			2012-703:2012-1309-T	g.chr5:649570_649571delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	649583	649584	+	Intron	DEL	TG	-	-			2012-703:2012-1309-T	g.chr5:649583_649584delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650815	650815	+	Intron	DEL	A	-	-			2012-703:2012-1309-T	g.chr5:650815delA	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650839	650840	+	Intron	DEL	TG	-	-			2012-703:2012-1309-T	g.chr5:650839_650840delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650933	650934	+	Intron	DEL	TG	-	-			2012-703:2012-1309-T	g.chr5:650933_650934delTG	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	650950	650950	+	Intron	DEL	A	-	-			2012-703:2012-1309-T	g.chr5:650950delA	uc003jbf.2	+							NM_018140	NP_060610
CEP72	55722	broad.mit.edu	37	5	651025	651025	+	Intron	DEL	T	-	-			2012-703:2012-1309-T	g.chr5:651025delT	uc003jbf.2	+							NM_018140	NP_060610
NKD2	85409	broad.mit.edu	37	5	1026064	1026065	+	Intron	INS	-	A	A			2012-703:2012-1309-T	g.chr5:1026064_1026065insA	uc003jbt.1	+						NKD2_uc010itf.1_Intron	NM_033120	NP_149111
SLC12A7	10723	broad.mit.edu	37	5	1071333	1071334	+	Intron	INS	-	G	G			2012-703:2012-1309-T	g.chr5:1071333_1071334insG	uc003jbu.2	-							NM_006598	NP_006589
RASGRF2	5924	broad.mit.edu	37	5	80465727	80465735	+	Intron	DEL	CACCTGCGT	-	-	rs141478204;rs62364962	by1000genomes	2012-703:2012-1309-T	g.chr5:80465727_80465735delCACCTGCGT	uc003kha.1	+						RASGRF2_uc011ctn.1_Intron	NM_006909	NP_008840
FAT2	2196	broad.mit.edu	37	5	150923746	150923747	+	Frame_Shift_Ins	INS	-	T	T			2012-703:2012-1309-T	g.chr5:150923746_150923747insT	uc003lue.3	-	9	6954_6955	c.6941_6942insA	c.(6940-6942)GATfs	p.D2314fs	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438
SYTL3	94120	broad.mit.edu	37	6	159122182	159122183	+	Intron	INS	-	T	T	rs73797085	by1000genomes	2012-703:2012-1309-T	g.chr6:159122182_159122183insT	uc003qrp.2	+						SYTL3_uc011efp.1_Intron|SYTL3_uc003qro.2_Intron|SYTL3_uc003qrq.2_Intron|SYTL3_uc003qrr.2_Intron|SYTL3_uc003qrs.2_Intron|SYTL3_uc011efq.1_Intron	NM_001009991	NP_001009991
PARK2	5071	broad.mit.edu	37	6	162364900	162364906	+	Intron	DEL	GAGGAAG	-	-			2012-703:2012-1309-T	g.chr6:162364900_162364906delGAGGAAG	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron	NM_004562	NP_004553
PARK2	5071	broad.mit.edu	37	6	162364908	162364913	+	Intron	DEL	AGCCTG	-	-	rs115263960	by1000genomes	2012-703:2012-1309-T	g.chr6:162364908_162364913delAGCCTG	uc003qtx.3	-						PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Intron	NM_004562	NP_004553
RPS6KA2	6196	broad.mit.edu	37	6	166863889	166863900	+	Intron	DEL	CACCACAGGGAC	-	-	rs62438443		2012-703:2012-1309-T	g.chr6:166863889_166863900delCACCACAGGGAC	uc003qvb.1	-						RPS6KA2_uc011ego.1_Intron|RPS6KA2_uc010kkl.1_Intron|RPS6KA2_uc003qvc.1_Intron|RPS6KA2_uc003qvd.1_Intron	NM_021135	NP_066958
SMOC2	64094	broad.mit.edu	37	6	169014649	169014650	+	Intron	DEL	GG	-	-			2012-703:2012-1309-T	g.chr6:169014649_169014650delGG	uc003qws.1	+						SMOC2_uc003qwr.1_Intron	NM_022138	NP_071421
TBP	6908	broad.mit.edu	37	6	170871047	170871055	+	In_Frame_Del	DEL	CAGCAGCAG	-	-	rs56241301;rs112083427;rs71554912		2012-703:2012-1309-T	g.chr6:170871047_170871055delCAGCAGCAG	uc003qxt.2	+	3	455_463	c.223_231delCAGCAGCAG	c.(223-231)CAGCAGCAGdel	p.QQQ93del	TBP_uc003qxu.2_In_Frame_Del_p.QQQ93del|TBP_uc011ehf.1_In_Frame_Del_p.QQQ73del|TBP_uc011ehg.1_In_Frame_Del_p.QQQ93del	NM_003194	NP_003185
GET4	51608	broad.mit.edu	37	7	933008	933009	+	Intron	INS	-	GCG	GCG	rs59856326		2012-703:2012-1309-T	g.chr7:933008_933009insGCG	uc003sjl.1	+						GET4_uc003sjj.1_Intron	NM_015949	NP_057033
ADAP1	11033	broad.mit.edu	37	7	945654	945655	+	Intron	INS	-	A	A			2012-703:2012-1309-T	g.chr7:945654_945655insA	uc003sjo.3	-						ADAP1_uc003sjm.3_5'Flank|ADAP1_uc011jvs.1_Intron|ADAP1_uc003sjn.3_Intron|ADAP1_uc010ksc.2_Intron	NM_006869	NP_006860
PTPRN2	5799	broad.mit.edu	37	7	158316662	158316663	+	Intron	INS	-	TCT	TCT			2012-703:2012-1309-T	g.chr7:158316662_158316663insTCT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron	NM_002847	NP_002838
NCAPG2	54892	broad.mit.edu	37	7	158460763	158460764	+	Intron	INS	-	C	C			2012-703:2012-1309-T	g.chr7:158460763_158460764insC	uc003wnv.1	-						NCAPG2_uc010lqu.1_Intron|NCAPG2_uc003wnw.1_Intron|NCAPG2_uc003wnx.1_Intron|NCAPG2_uc011kwe.1_Intron|NCAPG2_uc011kwc.1_5'Flank	NM_017760	NP_060230
PEBP4	157310	broad.mit.edu	37	8	22623337	22623338	+	Intron	INS	-	A	A	rs71834123		2012-703:2012-1309-T	g.chr8:22623337_22623338insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623338	22623339	+	Intron	INS	-	TC	TC	rs71834123		2012-703:2012-1309-T	g.chr8:22623338_22623339insTC	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623369	22623370	+	Intron	INS	-	TC	TC	rs66898805;rs62494989		2012-703:2012-1309-T	g.chr8:22623369_22623370insTC	uc003xcn.1	-							NM_144962	NP_659399
TOP1MT	116447	broad.mit.edu	37	8	144404080	144404081	+	Intron	DEL	AG	-	-			2012-703:2012-1309-T	g.chr8:144404080_144404081delAG	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
TOP1MT	116447	broad.mit.edu	37	8	144404095	144404096	+	Intron	DEL	AT	-	-			2012-703:2012-1309-T	g.chr8:144404095_144404096delAT	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
ZNF16	7564	broad.mit.edu	37	8	146172207	146172208	+	Intron	DEL	CT	-	-			2012-703:2012-1309-T	g.chr8:146172207_146172208delCT	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
ZNF16	7564	broad.mit.edu	37	8	146172598	146172598	+	Intron	DEL	T	-	-	rs72325964		2012-703:2012-1309-T	g.chr8:146172598delT	uc003zet.2	-						ZNF16_uc003zeu.2_Intron	NM_001029976	NP_001025147
POMT1	10585	broad.mit.edu	37	9	134391445	134391446	+	Intron	DEL	TA	-	-			2012-703:2012-1309-T	g.chr9:134391445_134391446delTA	uc004cav.2	+						POMT1_uc004cax.2_Intron|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Intron|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Intron|POMT1_uc011mcn.1_Intron	NM_007171	NP_009102
EXD3	54932	broad.mit.edu	37	9	140223916	140223916	+	Intron	DEL	A	-	-			2012-703:2012-1309-T	g.chr9:140223916delA	uc004cmp.2	-						C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Intron	NM_017820	NP_060290
TCEA3	6920	broad.mit.edu	37	1	23719103	23719104	+	Intron	DEL	AC	-	-			2012-705:2012-1310-T	g.chr1:23719103_23719104delAC	uc001bgx.1	-						TCEA3_uc009vqm.1_Intron	NM_003196	NP_003187
TCEA3	6920	broad.mit.edu	37	1	23719158	23719159	+	Intron	DEL	CC	-	-			2012-705:2012-1310-T	g.chr1:23719158_23719159delCC	uc001bgx.1	-						TCEA3_uc009vqm.1_Intron	NM_003196	NP_003187
PTPRF	5792	broad.mit.edu	37	1	44025845	44025846	+	Intron	INS	-	TG	TG	rs142071261;rs72300383	by1000genomes	2012-705:2012-1310-T	g.chr1:44025845_44025846insTG	uc001cjr.2	+						PTPRF_uc001cjq.3_Intron|PTPRF_uc001cjs.2_Intron|PTPRF_uc001cjt.3_Intron	NM_002840	NP_002831
CD247	919	broad.mit.edu	37	1	167404233	167404233	+	Intron	DEL	T	-	-			2012-705:2012-1310-T	g.chr1:167404233delT	uc001gei.3	-						CD247_uc001gej.3_Intron	NM_198053	NP_932170
LGR6	59352	broad.mit.edu	37	1	202174496	202174497	+	Intron	DEL	AA	-	-	rs141417100	by1000genomes	2012-705:2012-1310-T	g.chr1:202174496_202174497delAA	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
LGR6	59352	broad.mit.edu	37	1	202174523	202174538	+	Intron	DEL	CAAACACACACACCTC	-	-	rs150413294;rs138325910	by1000genomes;by1000genomes	2012-705:2012-1310-T	g.chr1:202174523_202174538delCAAACACACACACCTC	uc001gxu.2	+						LGR6_uc001gxv.2_Intron|LGR6_uc009xab.2_Intron	NM_001017403	NP_001017403
RNH1	6050	broad.mit.edu	37	11	497211	497212	+	Intron	INS	-	CACA	CACA	rs146656956	by1000genomes	2012-705:2012-1310-T	g.chr11:497211_497212insCACA	uc001lpk.1	-						RNH1_uc001lpl.1_Intron|RNH1_uc001lpm.1_Intron|RNH1_uc001lpn.1_Intron|RNH1_uc001lpo.1_Intron|RNH1_uc009ybw.1_Intron|RNH1_uc001lpp.1_Intron|RNH1_uc001lpt.1_Intron|RNH1_uc001lpq.1_Intron|RNH1_uc001lpr.1_Intron|RNH1_uc001lps.1_Intron	NM_203389	NP_976323
TP53I11	9537	broad.mit.edu	37	11	44963981	44963984	+	Intron	DEL	ACAC	-	-	rs111417341		2012-705:2012-1310-T	g.chr11:44963981_44963984delACAC	uc001myi.2	-						TP53I11_uc001myf.1_Intron|TP53I11_uc001myj.2_Intron|TP53I11_uc001myk.2_Intron|TP53I11_uc001myl.2_Intron|TP53I11_uc001mym.2_Intron	NM_006034	NP_006025
MACROD1	28992	broad.mit.edu	37	11	63777763	63777764	+	Intron	INS	-	GG	GG			2012-705:2012-1310-T	g.chr11:63777763_63777764insGG	uc001nyh.2	-							NM_014067	NP_054786
ETV6	2120	broad.mit.edu	37	12	12201010	12201013	+	Intron	DEL	TGTG	-	-			2012-705:2012-1310-T	g.chr12:12201010_12201013delTGTG	uc001raa.1	+						uc001rab.1_5'Flank	NM_001987	NP_001978
ST8SIA1	6489	broad.mit.edu	37	12	22473880	22473881	+	Intron	DEL	AA	-	-	rs72131462;rs55671980		2012-705:2012-1310-T	g.chr12:22473880_22473881delAA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
ST8SIA1	6489	broad.mit.edu	37	12	22473949	22473950	+	Intron	DEL	AA	-	-			2012-705:2012-1310-T	g.chr12:22473949_22473950delAA	uc001rfo.3	-						ST8SIA1_uc009zix.2_Intron	NM_003034	NP_003025
TMEM120B	144404	broad.mit.edu	37	12	122185990	122185991	+	Intron	DEL	CA	-	-	rs72024648;rs67603870		2012-705:2012-1310-T	g.chr12:122185990_122185991delCA	uc001ubc.3	+						TMEM120B_uc009zxh.2_Intron	NM_001080825	NP_001074294
NCOR2	9612	broad.mit.edu	37	12	124953534	124953534	+	Intron	DEL	C	-	-			2012-705:2012-1310-T	g.chr12:124953534delC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
RIMBP2	23504	broad.mit.edu	37	12	131068901	131068906	+	Intron	DEL	CACCAT	-	-			2012-705:2012-1310-T	g.chr12:131068901_131068906delCACCAT	uc001uim.2	-								
GPR133	283383	broad.mit.edu	37	12	131530780	131530780	+	Intron	DEL	C	-	-	rs72149353		2012-705:2012-1310-T	g.chr12:131530780delC	uc001uit.3	+						GPR133_uc010tbm.1_Intron	NM_198827	NP_942122
MCF2L	23263	broad.mit.edu	37	13	113713273	113713283	+	Intron	DEL	TGTTTCAGCGC	-	-	rs111740656;rs143729355;rs28410959;rs28490502;rs141372551	by1000genomes	2012-705:2012-1310-T	g.chr13:113713273_113713283delTGTTTCAGCGC	uc001vsu.2	+						MCF2L_uc001vsq.2_Intron|MCF2L_uc010tjr.1_Intron|MCF2L_uc001vsr.2_Intron|MCF2L_uc001vss.3_Intron|MCF2L_uc010tjs.1_Intron|MCF2L_uc001vst.1_Intron	NM_001112732	NP_001106203
GRK1	6011	broad.mit.edu	37	13	114430987	114430989	+	Intron	DEL	GAG	-	-			2012-705:2012-1310-T	g.chr13:114430987_114430989delGAG	uc010tkf.1	+							NM_002929	NP_002920
GRK1	6011	broad.mit.edu	37	13	114431267	114431269	+	Intron	DEL	AGT	-	-			2012-705:2012-1310-T	g.chr13:114431267_114431269delAGT	uc010tkf.1	+							NM_002929	NP_002920
RASA3	22821	broad.mit.edu	37	13	114883255	114883257	+	Intron	DEL	GAG	-	-			2012-705:2012-1310-T	g.chr13:114883255_114883257delGAG	uc001vui.2	-						RASA3_uc001vuj.2_Intron|RASA3_uc010tkl.1_Intron	NM_007368	NP_031394
BOLA2	552900	broad.mit.edu	37	16	30056826	30056827	+	Intron	DEL	GT	-	-			2012-705:2012-1310-T	g.chr16:30056826_30056827delGT	uc010bzb.1	-						uc002dtf.2_Intron		
GPT2	84706	broad.mit.edu	37	16	46949293	46949295	+	Intron	DEL	CAC	-	-			2012-705:2012-1310-T	g.chr16:46949293_46949295delCAC	uc002eel.2	+						GPT2_uc002eem.2_Intron	NM_133443	NP_597700
NUP93	9688	broad.mit.edu	37	16	56849811	56849812	+	Intron	INS	-	TGC	TGC	rs146899862;rs142265580	by1000genomes	2012-705:2012-1310-T	g.chr16:56849811_56849812insTGC	uc002eka.2	+						NUP93_uc002ekb.2_Intron|NUP93_uc010vhi.1_Intron	NM_014669	NP_055484
RPH3AL	9501	broad.mit.edu	37	17	137982	137983	+	Intron	INS	-	CT	CT			2012-705:2012-1310-T	g.chr17:137982_137983insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
RPH3AL	9501	broad.mit.edu	37	17	138602	138603	+	Intron	INS	-	CT	CT			2012-705:2012-1310-T	g.chr17:138602_138603insCT	uc002frd.1	-						RPH3AL_uc010vpy.1_Intron|RPH3AL_uc002fre.1_Intron|RPH3AL_uc002frf.1_Intron|RPH3AL_uc010cjl.1_Intron	NM_006987	NP_008918
CACNG4	27092	broad.mit.edu	37	17	65022236	65022239	+	Intron	DEL	TGTA	-	-			2012-705:2012-1310-T	g.chr17:65022236_65022239delTGTA	uc002jft.1	+							NM_014405	NP_055220
RPTOR	57521	broad.mit.edu	37	17	78608663	78608673	+	Intron	DEL	TGTGTGCATAC	-	-	rs67330071		2012-705:2012-1310-T	g.chr17:78608663_78608673delTGTGTGCATAC	uc002jyt.1	+						RPTOR_uc002jys.2_Intron|RPTOR_uc010wuf.1_Intron|RPTOR_uc010wug.1_Intron	NM_020761	NP_065812
TBCD	6904	broad.mit.edu	37	17	80807802	80807803	+	Intron	INS	-	GCTC	GCTC			2012-705:2012-1310-T	g.chr17:80807802_80807803insGCTC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
TBCD	6904	broad.mit.edu	37	17	80807804	80807805	+	Intron	INS	-	C	C			2012-705:2012-1310-T	g.chr17:80807804_80807805insC	uc002kfz.2	+						TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron	NM_005993	NP_005984
ZNF236	7776	broad.mit.edu	37	18	74679398	74679399	+	Intron	INS	-	GGT	GGT	rs145977669		2012-705:2012-1310-T	g.chr18:74679398_74679399insGGT	uc002lmi.2	+						ZNF236_uc002lmj.2_Intron	NM_007345	NP_031371
SBNO2	22904	broad.mit.edu	37	19	1166218	1166223	+	Intron	DEL	CCGAGA	-	-	rs72977536	byFrequency;by1000genomes	2012-705:2012-1310-T	g.chr19:1166218_1166223delCCGAGA	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
SBNO2	22904	broad.mit.edu	37	19	1166226	1166226	+	Intron	DEL	C	-	-	rs114932434		2012-705:2012-1310-T	g.chr19:1166226delC	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
SBNO2	22904	broad.mit.edu	37	19	1166230	1166231	+	Intron	INS	-	T	T	rs150401110;rs66492416		2012-705:2012-1310-T	g.chr19:1166230_1166231insT	uc002lrk.3	-						SBNO2_uc010dse.2_Intron	NM_014963	NP_055778
FBN3	84467	broad.mit.edu	37	19	8150969	8150969	+	Intron	DEL	A	-	-			2012-705:2012-1310-T	g.chr19:8150969delA	uc002mjf.2	-						FBN3_uc002mje.2_Intron	NM_032447	NP_115823
NOTCH3	4854	broad.mit.edu	37	19	15273583	15273584	+	Intron	DEL	TT	-	-	rs5827278;rs57540484		2012-705:2012-1310-T	g.chr19:15273583_15273584delTT	uc002nan.2	-							NM_000435	NP_000426
DYSF	8291	broad.mit.edu	37	2	71799364	71799385	+	Intron	DEL	CACAGATCACACCTAGCACACC	-	-	rs70959302;rs72078337;rs112184497;rs116794045;rs145802178		2012-705:2012-1310-T	g.chr2:71799364_71799385delCACAGATCACACCTAGCACACC	uc002sie.2	+						DYSF_uc010feg.2_Intron|DYSF_uc010feh.2_Intron|DYSF_uc002sig.3_Intron|DYSF_uc010yqx.1_Intron|DYSF_uc010fee.2_Intron|DYSF_uc010fef.2_Intron|DYSF_uc010fei.2_Intron|DYSF_uc010fek.2_Intron|DYSF_uc010fej.2_Intron|DYSF_uc010fel.2_Intron|DYSF_uc010feo.2_Intron|DYSF_uc010fem.2_Intron|DYSF_uc010fen.2_Intron|DYSF_uc002sif.2_Intron	NM_003494	NP_003485
RMND5A	64795	broad.mit.edu	37	2	87656069	87656069	+	Intron	DEL	A	-	-			2012-705:2012-1310-T	g.chr2:87656069delA	uc002srs.3	+								
AGAP1	116987	broad.mit.edu	37	2	236434039	236434040	+	Intron	DEL	AC	-	-	rs144248860		2012-705:2012-1310-T	g.chr2:236434039_236434040delAC	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
AGAP1	116987	broad.mit.edu	37	2	236711663	236711664	+	Intron	INS	-	TGA	TGA	rs147629941	by1000genomes	2012-705:2012-1310-T	g.chr2:236711663_236711664insTGA	uc002vvs.2	+						AGAP1_uc002vvt.2_Intron	NM_001037131	NP_001032208
MLPH	79083	broad.mit.edu	37	2	238453843	238453844	+	Intron	INS	-	GG	GG			2012-705:2012-1310-T	g.chr2:238453843_238453844insGG	uc002vwt.2	+						MLPH_uc002vws.2_Intron|MLPH_uc010fyt.1_Intron|MLPH_uc002vwu.2_Intron|MLPH_uc002vwv.2_Intron|MLPH_uc002vww.2_Intron|MLPH_uc002vwx.2_Intron|MLPH_uc010fyu.2_Intron	NM_024101	NP_077006
CDH4	1002	broad.mit.edu	37	20	59858492	59858498	+	Intron	DEL	TGTGGTG	-	-	rs13041045		2012-705:2012-1310-T	g.chr20:59858492_59858498delTGTGGTG	uc002ybn.1	+							NM_001794	NP_001785
CDH4	1002	broad.mit.edu	37	20	60433354	60433355	+	Intron	DEL	TC	-	-			2012-705:2012-1310-T	g.chr20:60433354_60433355delTC	uc002ybn.1	+						CDH4_uc002ybp.1_Intron	NM_001794	NP_001785
ABCG1	9619	broad.mit.edu	37	21	43713189	43713192	+	Intron	DEL	CACA	-	-			2012-705:2012-1310-T	g.chr21:43713189_43713192delCACA	uc002zaq.2	+						ABCG1_uc002zan.2_Intron|ABCG1_uc002zam.2_Intron|ABCG1_uc002zao.2_Intron|ABCG1_uc002zap.2_Intron|ABCG1_uc002zar.2_Intron|ABCG1_uc011aev.1_Intron|ABCG1_uc010gpb.1_Intron	NM_004915	NP_004906
WDR4	10785	broad.mit.edu	37	21	44268686	44268687	+	Intron	INS	-	CTCA	CTCA			2012-705:2012-1310-T	g.chr21:44268686_44268687insCTCA	uc002zci.2	-						uc002zcj.1_5'Flank	NM_033661	NP_387510
WDR4	10785	broad.mit.edu	37	21	44269241	44269242	+	Intron	INS	-	CTCA	CTCA	rs137882434;rs35460606	by1000genomes	2012-705:2012-1310-T	g.chr21:44269241_44269242insCTCA	uc002zci.2	-							NM_033661	NP_387510
KREMEN1	83999	broad.mit.edu	37	22	29516097	29516098	+	Intron	INS	-	AC	AC	rs56775329		2012-705:2012-1310-T	g.chr22:29516097_29516098insAC	uc011akm.1	+						KREMEN1_uc003ael.2_Intron|KREMEN1_uc011akn.1_Intron	NM_032045	NP_114434
MPPED1	758	broad.mit.edu	37	22	43828733	43828734	+	Intron	DEL	GA	-	-			2012-705:2012-1310-T	g.chr22:43828733_43828734delGA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
MPPED1	758	broad.mit.edu	37	22	43887611	43887612	+	Intron	INS	-	GGTGGTGGTGATGGA	GGTGGTGGTGATGGA			2012-705:2012-1310-T	g.chr22:43887611_43887612insGGTGGTGGTGATGGA	uc011apv.1	+						MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Intron|MPPED1_uc011apz.1_Intron	NM_001044370	NP_001037835
IFT122	55764	broad.mit.edu	37	3	129235882	129235883	+	Intron	INS	-	CA	CA			2012-705:2012-1310-T	g.chr3:129235882_129235883insCA	uc003emm.2	+						IFT122_uc003eml.2_Intron|IFT122_uc003emn.2_Intron|IFT122_uc003emo.2_Intron|IFT122_uc003emp.2_Intron|IFT122_uc010htc.2_Intron|IFT122_uc011bky.1_Intron|IFT122_uc003emq.2_Intron|IFT122_uc003emr.2_Intron|IFT122_uc011bla.1_Intron|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Intron	NM_052989	NP_443715
PDE6B	5158	broad.mit.edu	37	4	616560	616566	+	5'Flank	DEL	CATCTCA	-	-			2012-705:2012-1310-T	g.chr4:616560_616566delCATCTCA	uc003gap.2	+						PDE6B_uc003gao.3_5'Flank	NM_000283	NP_000274
PDE6B	5158	broad.mit.edu	37	4	616569	616572	+	5'Flank	DEL	TGTT	-	-			2012-705:2012-1310-T	g.chr4:616569_616572delTGTT	uc003gap.2	+						PDE6B_uc003gao.3_5'Flank	NM_000283	NP_000274
GAK	2580	broad.mit.edu	37	4	849992	849993	+	Intron	INS	-	T	T			2012-705:2012-1310-T	g.chr4:849992_849993insT	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	849994	849995	+	Intron	INS	-	AG	AG			2012-705:2012-1310-T	g.chr4:849994_849995insAG	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
GAK	2580	broad.mit.edu	37	4	850438	850447	+	Intron	DEL	GCTCACCATA	-	-			2012-705:2012-1310-T	g.chr4:850438_850447delGCTCACCATA	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
ZFYVE28	57732	broad.mit.edu	37	4	2338540	2338540	+	Intron	DEL	G	-	-			2012-705:2012-1310-T	g.chr4:2338540delG	uc003gex.1	-						ZFYVE28_uc011bvk.1_Intron|ZFYVE28_uc011bvl.1_Intron|ZFYVE28_uc003gey.3_Intron|ZFYVE28_uc003gez.2_Intron|ZFYVE28_uc003gew.1_Intron	NM_020972	NP_066023
HTT	3064	broad.mit.edu	37	4	3231354	3231355	+	Intron	DEL	CA	-	-			2012-705:2012-1310-T	g.chr4:3231354_3231355delCA	uc011bvq.1	+							NM_002111	NP_002102
MAML3	55534	broad.mit.edu	37	4	140811084	140811084	+	Frame_Shift_Del	DEL	C	-	-	rs12506879	by1000genomes	2012-705:2012-1310-T	g.chr4:140811084delC	uc003ihz.1	-	2	2258	c.1506delG	c.(1504-1506)CAGfs	p.Q502fs	MAML3_uc011chd.1_Intron	NM_018717	NP_061187
MAML3	55534	broad.mit.edu	37	4	140811086	140811096	+	Frame_Shift_Del	DEL	GCTGCTGCTGC	-	-	rs67877726;rs72161425;rs79090010	by1000genomes	2012-705:2012-1310-T	g.chr4:140811086_140811096delGCTGCTGCTGC	uc003ihz.1	-	2	2246_2256	c.1494_1504delGCAGCAGCAGC	c.(1492-1506)CAGCAGCAGCAGCAGfs	p.Q498fs	MAML3_uc011chd.1_Intron	NM_018717	NP_061187
MTNR1A	4543	broad.mit.edu	37	4	187461984	187461985	+	Intron	INS	-	GAAG	GAAG			2012-705:2012-1310-T	g.chr4:187461984_187461985insGAAG	uc003izd.1	-							NM_005958	NP_005949
MTNR1A	4543	broad.mit.edu	37	4	187468273	187468274	+	Intron	INS	-	TCC	TCC			2012-705:2012-1310-T	g.chr4:187468273_187468274insTCC	uc003izd.1	-							NM_005958	NP_005949
SLC12A7	10723	broad.mit.edu	37	5	1072388	1072389	+	Intron	INS	-	C	C			2012-705:2012-1310-T	g.chr5:1072388_1072389insC	uc003jbu.2	-							NM_006598	NP_006589
RNF130	55819	broad.mit.edu	37	5	179442607	179442607	+	Intron	DEL	G	-	-			2012-705:2012-1310-T	g.chr5:179442607delG	uc003mll.1	-						RNF130_uc003mlm.1_Intron|MIR340_hsa-mir-340|MI0000802_5'Flank|uc003mln.2_5'Flank	NM_018434	NP_060904
SLC22A23	63027	broad.mit.edu	37	6	3310661	3310661	+	Intron	DEL	C	-	-			2012-705:2012-1310-T	g.chr6:3310661delC	uc003mvm.3	-						SLC22A23_uc003mvn.3_Intron|SLC22A23_uc003mvo.3_Intron|SLC22A23_uc003mvp.1_Intron|SLC22A23_uc010jnn.2_Intron	NM_015482	NP_056297
HLA-G	3135	broad.mit.edu	37	6	29926301	29926315	+	Intron	DEL	GGGACAGTACCCAGG	-	-	rs140695210;rs41271884		2012-705:2012-1310-T	g.chr6:29926301_29926315delGGGACAGTACCCAGG	uc011dmb.1	+							NM_002127	NP_002118
SYNE1	23345	broad.mit.edu	37	6	152786901	152786902	+	Intron	INS	-	AC	AC	rs10549697		2012-705:2012-1310-T	g.chr6:152786901_152786902insAC	uc010kiw.2	-						SYNE1_uc003qot.3_Intron|SYNE1_uc003qou.3_Intron|SYNE1_uc010kjb.1_Intron|SYNE1_uc003qpa.1_Intron|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Intron|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Intron	NM_182961	NP_892006
CUX1	1523	broad.mit.edu	37	7	101860166	101860167	+	Intron	DEL	CA	-	-	rs148256350		2012-705:2012-1310-T	g.chr7:101860166_101860167delCA	uc003uyx.3	+						CUX1_uc003uys.3_Intron|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530
PRKAG2	51422	broad.mit.edu	37	7	151539720	151539721	+	Intron	INS	-	GGTA	GGTA	rs146532523;rs72407966	by1000genomes	2012-705:2012-1310-T	g.chr7:151539720_151539721insGGTA	uc003wkk.2	-						PRKAG2_uc010lqe.1_Intron|PRKAG2_uc003wkm.1_Intron	NM_016203	NP_057287
PTPRN2	5799	broad.mit.edu	37	7	157864134	157864148	+	Intron	DEL	GAGGTGCTCGTGGTT	-	-	rs144315471;rs117111043	by1000genomes;by1000genomes	2012-705:2012-1310-T	g.chr7:157864134_157864148delGAGGTGCTCGTGGTT	uc003wno.2	-						PTPRN2_uc003wnp.2_Intron|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Intron|uc003wnt.1_5'Flank	NM_002847	NP_002838
ERICH1	157697	broad.mit.edu	37	8	626336	626336	+	Intron	DEL	G	-	-			2012-705:2012-1310-T	g.chr8:626336delG	uc003wph.2	-						ERICH1_uc011kwh.1_Intron|ERICH1_uc003wpe.1_Intron|ERICH1_uc003wpi.2_5'Flank	NM_207332	NP_997215
PEBP4	157310	broad.mit.edu	37	8	22623306	22623307	+	Intron	INS	-	A	A	rs61315444;rs35035196		2012-705:2012-1310-T	g.chr8:22623306_22623307insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623307	22623308	+	Intron	INS	-	TC	TC	rs35035196;rs56184904		2012-705:2012-1310-T	g.chr8:22623307_22623308insTC	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623337	22623338	+	Intron	INS	-	A	A	rs71834123		2012-705:2012-1310-T	g.chr8:22623337_22623338insA	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623338	22623339	+	Intron	INS	-	TC	TC	rs71834123		2012-705:2012-1310-T	g.chr8:22623338_22623339insTC	uc003xcn.1	-							NM_144962	NP_659399
PEBP4	157310	broad.mit.edu	37	8	22623369	22623370	+	Intron	INS	-	TC	TC	rs66898805;rs62494989		2012-705:2012-1310-T	g.chr8:22623369_22623370insTC	uc003xcn.1	-							NM_144962	NP_659399
TOP1MT	116447	broad.mit.edu	37	8	144404149	144404163	+	Intron	DEL	GCACGCCACACACAT	-	-	rs138235081	by1000genomes	2012-705:2012-1310-T	g.chr8:144404149_144404163delGCACGCCACACACAT	uc003yxz.2	-						TOP1MT_uc011lkd.1_Intron|TOP1MT_uc011lke.1_Intron|TOP1MT_uc010mfb.2_Intron|TOP1MT_uc011lkf.1_Intron|TOP1MT_uc010mfd.1_Intron	NM_052963	NP_443195
COL5A1	1289	broad.mit.edu	37	9	137577220	137577221	+	Intron	INS	-	CCAT	CCAT	rs138665013		2012-705:2012-1310-T	g.chr9:137577220_137577221insCCAT	uc004cfe.2	+							NM_000093	NP_000084
SCNN1D	6339	broad.mit.edu	37	1	1223836	1223837	+	Intron	DEL	CC	-	-			2012-706:2012-1311-T	g.chr1:1223836_1223837delCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
SCNN1D	6339	broad.mit.edu	37	1	1224265	1224266	+	Intron	INS	-	CC	CC			2012-706:2012-1311-T	g.chr1:1224265_1224266insCC	uc001adu.1	+						SCNN1D_uc001adt.1_Intron|SCNN1D_uc001adw.2_Intron|SCNN1D_uc001adx.2_Intron|SCNN1D_uc001adv.2_Intron	NM_002978	NP_002969
PRDM16	63976	broad.mit.edu	37	1	3030991	3030992	+	Intron	INS	-	G	G	rs142220406;rs150992402	by1000genomes	2012-706:2012-1311-T	g.chr1:3030991_3030992insG	uc001akf.2	+						PRDM16_uc001akc.2_Intron|PRDM16_uc001akd.2_Intron|PRDM16_uc001ake.2_Intron|PRDM16_uc009vlh.2_Intron	NM_022114	NP_071397
MEGF6	1953	broad.mit.edu	37	1	3427171	3427173	+	Intron	DEL	CCA	-	-			2012-706:2012-1311-T	g.chr1:3427171_3427173delCCA	uc001akl.2	-						MEGF6_uc001akk.2_Intron	NM_001409	NP_001400
C1orf173	127254	broad.mit.edu	37	1	75102138	75102138	+	Intron	DEL	A	-	-			2012-706:2012-1311-T	g.chr1:75102138delA	uc001dgg.2	-						C1orf173_uc001dgi.3_5'Flank	NM_001002912	NP_001002912
KIF21B	23046	broad.mit.edu	37	1	200976484	200976485	+	Intron	DEL	AC	-	-			2012-706:2012-1311-T	g.chr1:200976484_200976485delAC	uc001gvs.1	-						KIF21B_uc001gvr.1_Intron|KIF21B_uc009wzl.1_Intron|KIF21B_uc010ppn.1_Intron|KIF21B_uc001gvt.1_5'Flank	NM_017596	NP_060066
CNST	163882	broad.mit.edu	37	1	246783848	246783849	+	Intron	DEL	TC	-	-	rs72056399;rs71638362		2012-706:2012-1311-T	g.chr1:246783848_246783849delTC	uc001ibp.2	+						CNST_uc001ibo.3_Intron	NM_152609	NP_689822
PCDH15	65217	broad.mit.edu	37	10	57298680	57298681	+	Intron	DEL	TT	-	-			2012-706:2012-1311-T	g.chr10:57298680_57298681delTT	uc001jjv.1	-							NM_001142770	NP_001136242
PCDH15	65217	broad.mit.edu	37	10	57298683	57298684	+	Intron	DEL	CT	-	-			2012-706:2012-1311-T	g.chr10:57298683_57298684delCT	uc001jjv.1	-							NM_001142770	NP_001136242
JAKMIP3	282973	broad.mit.edu	37	10	133974604	133974605	+	Intron	INS	-	G	G			2012-706:2012-1311-T	g.chr10:133974604_133974605insG	uc001lkx.3	+						JAKMIP3_uc009yba.1_Intron	NM_001105521	NP_001098991
ODF3	113746	broad.mit.edu	37	11	196148	196149	+	5'Flank	DEL	GA	-	-			2012-706:2012-1311-T	g.chr11:196148_196149delGA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
ODF3	113746	broad.mit.edu	37	11	196254	196263	+	5'Flank	DEL	CATGAGGGGG	-	-			2012-706:2012-1311-T	g.chr11:196254_196263delCATGAGGGGG	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
ODF3	113746	broad.mit.edu	37	11	196267	196267	+	5'Flank	DEL	T	-	-			2012-706:2012-1311-T	g.chr11:196267delT	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510
TP53I11	9537	broad.mit.edu	37	11	44963887	44963888	+	Intron	DEL	CA	-	-			2012-706:2012-1311-T	g.chr11:44963887_44963888delCA	uc001myi.2	-						TP53I11_uc001myf.1_Intron|TP53I11_uc001myj.2_Intron|TP53I11_uc001myk.2_Intron|TP53I11_uc001myl.2_Intron|TP53I11_uc001mym.2_Intron	NM_006034	NP_006025
PTPRR	5801	broad.mit.edu	37	12	71124902	71124903	+	Intron	DEL	GA	-	-			2012-706:2012-1311-T	g.chr12:71124902_71124903delGA	uc001swi.1	-						PTPRR_uc001swh.1_Intron|PTPRR_uc009zrs.2_Intron|PTPRR_uc010stq.1_Intron|PTPRR_uc010str.1_Intron	NM_002849	NP_002840
NCOR2	9612	broad.mit.edu	37	12	124964000	124964001	+	Intron	INS	-	ACAC	ACAC	rs144568176	by1000genomes	2012-706:2012-1311-T	g.chr12:124964000_124964001insACAC	uc010tba.1	-						NCOR2_uc010tay.1_Intron|NCOR2_uc010taz.1_Intron|NCOR2_uc010tbb.1_Intron|NCOR2_uc010tbc.1_Intron|NCOR2_uc001ugj.1_Intron|NCOR2_uc001ugk.1_Intron	NM_001077261	NP_001070729
TMEM132D	121256	broad.mit.edu	37	12	129988526	129988528	+	Intron	DEL	TCA	-	-	rs34304420		2012-706:2012-1311-T	g.chr12:129988526_129988528delTCA	uc009zyl.1	-							NM_133448	NP_597705
TMEM132D	121256	broad.mit.edu	37	12	129988574	129988576	+	Intron	DEL	TCA	-	-			2012-706:2012-1311-T	g.chr12:129988574_129988576delTCA	uc009zyl.1	-							NM_133448	NP_597705
PXMP2	5827	broad.mit.edu	37	12	133270136	133270136	+	Intron	DEL	A	-	-	rs66560973		2012-706:2012-1311-T	g.chr12:133270136delA	uc001ukt.2	+						PGAM5_uc010tbr.1_Intron	NM_018663	NP_061133
COL4A1	1282	broad.mit.edu	37	13	110908133	110908133	+	Intron	DEL	A	-	-			2012-706:2012-1311-T	g.chr13:110908133delA	uc001vqw.3	-						COL4A1_uc010agl.2_Intron	NM_001845	NP_001836
COL4A2	1284	broad.mit.edu	37	13	111134150	111134150	+	Intron	DEL	T	-	-	rs67395931		2012-706:2012-1311-T	g.chr13:111134150delT	uc001vqx.2	+							NM_001846	NP_001837
CHRFAM7A	89832	broad.mit.edu	37	15	30668185	30668186	+	Intron	INS	-	AT	AT	rs146286293;rs117449055	by1000genomes	2012-706:2012-1311-T	g.chr15:30668185_30668186insAT	uc001zdt.1	-						CHRFAM7A_uc001zdu.1_Intron|CHRFAM7A_uc010azn.2_Intron|CHRFAM7A_uc001zdv.2_5'Flank	NM_139320	NP_647536
RAB11FIP3	9727	broad.mit.edu	37	16	554202	554202	+	Intron	DEL	C	-	-			2012-706:2012-1311-T	g.chr16:554202delC	uc002chf.2	+						RAB11FIP3_uc010uuf.1_Intron|RAB11FIP3_uc010uug.1_Intron	NM_014700	NP_055515
TIMM22	29928	broad.mit.edu	37	17	897483	897483	+	5'Flank	DEL	C	-	-	rs111389070		2012-706:2012-1311-T	g.chr17:897483delC	uc002fsc.2	+							NM_013337	NP_037469
KCNJ12	3768	broad.mit.edu	37	17	21313596	21313597	+	Intron	INS	-	ACT	ACT	rs138484086;rs142874237		2012-706:2012-1311-T	g.chr17:21313596_21313597insACT	uc002gyv.1	+							NM_021012	NP_066292
ATP9B	374868	broad.mit.edu	37	18	77006266	77006267	+	Intron	INS	-	GC	GC			2012-706:2012-1311-T	g.chr18:77006266_77006267insGC	uc002lmx.2	+						ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Intron|ATP9B_uc002lmy.1_Intron|ATP9B_uc002lmz.1_Intron	NM_198531	NP_940933
KCNG2	26251	broad.mit.edu	37	18	77625296	77625297	+	Intron	INS	-	GA	GA			2012-706:2012-1311-T	g.chr18:77625296_77625297insGA	uc010xfl.1	+							NM_012283	NP_036415
ZBTB46	140685	broad.mit.edu	37	20	62439418	62439419	+	5'Flank	DEL	GG	-	-	rs10577517		2012-706:2012-1311-T	g.chr20:62439418_62439419delGG	uc002ygv.1	-						ZBTB46_uc002ygu.2_Intron|uc002ygw.2_5'Flank	NM_025224	NP_079500
GAK	2580	broad.mit.edu	37	4	850356	850358	+	Intron	DEL	CAC	-	-	rs33935481		2012-706:2012-1311-T	g.chr4:850356_850358delCAC	uc003gbm.3	-						GAK_uc003gbn.3_Intron|GAK_uc010ibi.2_Intron|GAK_uc010ibj.2_Intron|GAK_uc003gbl.3_Intron	NM_005255	NP_005246
UNC5A	90249	broad.mit.edu	37	5	176299482	176299482	+	Intron	DEL	G	-	-			2012-706:2012-1311-T	g.chr5:176299482delG	uc003mey.2	+						UNC5A_uc010jkg.1_Intron	NM_133369	NP_588610
NCAPG2	54892	broad.mit.edu	37	7	158460591	158460591	+	Intron	DEL	C	-	-			2012-706:2012-1311-T	g.chr7:158460591delC	uc003wnv.1	-						NCAPG2_uc010lqu.1_Intron|NCAPG2_uc003wnw.1_Intron|NCAPG2_uc003wnx.1_Intron|NCAPG2_uc011kwe.1_Intron|NCAPG2_uc011kwc.1_5'Flank	NM_017760	NP_060230
CDKN2A	1029	broad.mit.edu	37	9	21971124	21971125	+	Frame_Shift_Del	DEL	GA	-	-			2012-706:2012-1311-T	g.chr9:21971124_21971125delGA	uc003zpk.2	-	2	445_446	c.233_234delTC	c.(232-234)CTCfs	p.L78fs	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Frame_Shift_Del_p.S133fs	NM_000077	NP_000068
TRPM3	80036	broad.mit.edu	37	9	74035904	74035905	+	Intron	DEL	AG	-	-	rs11142819		2012-706:2012-1311-T	g.chr9:74035904_74035905delAG	uc004aii.2	-							NM_206948	NP_996831
COL5A1	1289	broad.mit.edu	37	9	137577431	137577432	+	Intron	INS	-	A	A	rs139419653		2012-706:2012-1311-T	g.chr9:137577431_137577432insA	uc004cfe.2	+							NM_000093	NP_000084